Multiple sequence alignment - TraesCS6A01G312400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G312400 chr6A 100.000 4953 0 0 1 4953 549046631 549041679 0.000000e+00 9147.0
1 TraesCS6A01G312400 chr6A 89.017 346 36 2 1117 1461 94226999 94227343 1.270000e-115 427.0
2 TraesCS6A01G312400 chr6A 88.208 212 22 2 1990 2198 94227468 94227679 2.960000e-62 250.0
3 TraesCS6A01G312400 chr6A 91.228 57 4 1 4529 4584 158049171 158049115 5.320000e-10 76.8
4 TraesCS6A01G312400 chr6A 97.368 38 1 0 4529 4566 529600509 529600546 1.150000e-06 65.8
5 TraesCS6A01G312400 chr6B 88.289 2741 139 72 1520 4183 603147313 603144678 0.000000e+00 3116.0
6 TraesCS6A01G312400 chr6B 86.567 1340 94 45 251 1523 603148776 603147456 0.000000e+00 1399.0
7 TraesCS6A01G312400 chr6B 94.879 371 18 1 4583 4953 603144206 603143837 3.320000e-161 579.0
8 TraesCS6A01G312400 chr6B 87.017 362 43 3 1101 1461 151372525 151372883 5.970000e-109 405.0
9 TraesCS6A01G312400 chr6B 95.055 182 8 1 1 182 603149283 603149103 8.110000e-73 285.0
10 TraesCS6A01G312400 chr6B 88.208 212 22 2 1990 2198 151373017 151373228 2.960000e-62 250.0
11 TraesCS6A01G312400 chr6B 96.491 57 1 1 4529 4584 217157792 217157848 5.280000e-15 93.5
12 TraesCS6A01G312400 chr6D 92.188 1869 82 28 2350 4182 402352000 402350160 0.000000e+00 2584.0
13 TraesCS6A01G312400 chr6D 86.978 1797 82 68 197 1873 402354255 402352491 0.000000e+00 1882.0
14 TraesCS6A01G312400 chr6D 92.727 495 16 12 1886 2363 402352505 402352014 0.000000e+00 697.0
15 TraesCS6A01G312400 chr6D 96.226 371 13 1 4583 4953 402349683 402349314 1.520000e-169 606.0
16 TraesCS6A01G312400 chr6D 87.017 362 43 3 1101 1461 78752726 78753084 5.970000e-109 405.0
17 TraesCS6A01G312400 chr6D 95.098 204 6 3 1 201 402354518 402354316 8.000000e-83 318.0
18 TraesCS6A01G312400 chr7D 84.330 619 76 13 3287 3893 159738423 159739032 1.990000e-163 586.0
19 TraesCS6A01G312400 chr7D 85.131 343 45 6 1122 1461 93033803 93033464 3.670000e-91 346.0
20 TraesCS6A01G312400 chr7D 89.020 255 28 0 2909 3163 159738124 159738378 2.880000e-82 316.0
21 TraesCS6A01G312400 chr7D 92.718 206 15 0 1991 2196 159737274 159737479 1.040000e-76 298.0
22 TraesCS6A01G312400 chr7D 74.843 636 125 30 3241 3865 93032732 93032121 6.360000e-64 255.0
23 TraesCS6A01G312400 chr7A 83.283 658 83 17 3248 3890 158396998 158397643 9.240000e-162 580.0
24 TraesCS6A01G312400 chr7A 88.031 259 30 1 2905 3163 158396735 158396992 6.230000e-79 305.0
25 TraesCS6A01G312400 chr7A 92.718 206 15 0 1991 2196 158395916 158396121 1.040000e-76 298.0
26 TraesCS6A01G312400 chr7A 75.748 635 121 28 3241 3865 96050703 96050092 6.270000e-74 289.0
27 TraesCS6A01G312400 chr7B 83.855 607 80 12 3287 3884 120588781 120589378 3.350000e-156 562.0
28 TraesCS6A01G312400 chr7B 89.804 255 26 0 2909 3163 120588482 120588736 1.330000e-85 327.0
29 TraesCS6A01G312400 chr7B 91.748 206 17 0 1991 2196 120587634 120587839 2.260000e-73 287.0
30 TraesCS6A01G312400 chr7B 84.586 266 39 2 2911 3175 45641346 45641082 3.800000e-66 263.0
31 TraesCS6A01G312400 chr7B 84.825 257 39 0 2911 3167 45848789 45849045 4.920000e-65 259.0
32 TraesCS6A01G312400 chr7B 74.843 636 125 30 3241 3865 45640908 45640297 6.360000e-64 255.0
33 TraesCS6A01G312400 chr7B 74.840 624 122 30 3241 3853 45849227 45849826 2.960000e-62 250.0
34 TraesCS6A01G312400 chr7B 90.566 53 4 1 4516 4567 743926903 743926955 8.900000e-08 69.4
35 TraesCS6A01G312400 chr7B 100.000 36 0 0 4529 4564 641326258 641326223 3.200000e-07 67.6
36 TraesCS6A01G312400 chr5A 87.606 355 37 7 1122 1473 410203609 410203259 5.970000e-109 405.0
37 TraesCS6A01G312400 chr5A 87.072 263 34 0 2905 3167 410202817 410202555 1.040000e-76 298.0
38 TraesCS6A01G312400 chr5A 94.340 53 2 1 4533 4585 27932970 27932919 4.110000e-11 80.5
39 TraesCS6A01G312400 chr5D 86.782 348 42 4 1122 1467 315485497 315485152 7.780000e-103 385.0
40 TraesCS6A01G312400 chr5D 86.312 263 36 0 2905 3167 315484703 315484441 2.260000e-73 287.0
41 TraesCS6A01G312400 chr5D 87.019 208 27 0 1991 2198 315484973 315484766 8.290000e-58 235.0
42 TraesCS6A01G312400 chr5B 86.667 345 39 7 1126 1467 363669765 363669425 4.680000e-100 375.0
43 TraesCS6A01G312400 chr5B 87.019 208 27 0 1991 2198 363669246 363669039 8.290000e-58 235.0
44 TraesCS6A01G312400 chr5B 91.489 47 3 1 4519 4564 251577462 251577508 4.140000e-06 63.9
45 TraesCS6A01G312400 chr4B 95.455 44 1 1 4529 4572 98474893 98474851 8.900000e-08 69.4
46 TraesCS6A01G312400 chr1D 89.583 48 4 1 4521 4567 476767529 476767482 5.350000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G312400 chr6A 549041679 549046631 4952 True 9147.000000 9147 100.000000 1 4953 1 chr6A.!!$R2 4952
1 TraesCS6A01G312400 chr6A 94226999 94227679 680 False 338.500000 427 88.612500 1117 2198 2 chr6A.!!$F2 1081
2 TraesCS6A01G312400 chr6B 603143837 603149283 5446 True 1344.750000 3116 91.197500 1 4953 4 chr6B.!!$R1 4952
3 TraesCS6A01G312400 chr6B 151372525 151373228 703 False 327.500000 405 87.612500 1101 2198 2 chr6B.!!$F2 1097
4 TraesCS6A01G312400 chr6D 402349314 402354518 5204 True 1217.400000 2584 92.643400 1 4953 5 chr6D.!!$R1 4952
5 TraesCS6A01G312400 chr7D 159737274 159739032 1758 False 400.000000 586 88.689333 1991 3893 3 chr7D.!!$F1 1902
6 TraesCS6A01G312400 chr7D 93032121 93033803 1682 True 300.500000 346 79.987000 1122 3865 2 chr7D.!!$R1 2743
7 TraesCS6A01G312400 chr7A 158395916 158397643 1727 False 394.333333 580 88.010667 1991 3890 3 chr7A.!!$F1 1899
8 TraesCS6A01G312400 chr7A 96050092 96050703 611 True 289.000000 289 75.748000 3241 3865 1 chr7A.!!$R1 624
9 TraesCS6A01G312400 chr7B 120587634 120589378 1744 False 392.000000 562 88.469000 1991 3884 3 chr7B.!!$F3 1893
10 TraesCS6A01G312400 chr7B 45640297 45641346 1049 True 259.000000 263 79.714500 2911 3865 2 chr7B.!!$R2 954
11 TraesCS6A01G312400 chr7B 45848789 45849826 1037 False 254.500000 259 79.832500 2911 3853 2 chr7B.!!$F2 942
12 TraesCS6A01G312400 chr5A 410202555 410203609 1054 True 351.500000 405 87.339000 1122 3167 2 chr5A.!!$R2 2045
13 TraesCS6A01G312400 chr5D 315484441 315485497 1056 True 302.333333 385 86.704333 1122 3167 3 chr5D.!!$R1 2045
14 TraesCS6A01G312400 chr5B 363669039 363669765 726 True 305.000000 375 86.843000 1126 2198 2 chr5B.!!$R1 1072

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 1052 0.108585 TCGTTTCTTTCCTGCCTGCT 59.891 50.0 0.00 0.00 0.0 4.24 F
2243 2959 0.039256 GTTGACGTGGTGCATGCAAT 60.039 50.0 24.58 5.62 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2444 3217 1.073216 CTCATCGCGTCGAGCTGTTT 61.073 55.0 5.77 0.0 45.59 2.83 R
4223 5330 0.034896 TCTCCTTTCGTGGCCAACTC 59.965 55.0 7.24 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 0.179134 GACCAACCGATCGTGGAGAG 60.179 60.000 26.37 8.32 0.00 3.20
56 57 0.596083 CGATCGTGGAGAGACATGCC 60.596 60.000 7.03 0.00 0.00 4.40
115 116 2.550978 CGGAACAATAATCTCACGGCT 58.449 47.619 0.00 0.00 0.00 5.52
191 192 0.167908 CTACCGCGTAACGTGTACCA 59.832 55.000 4.92 0.00 41.42 3.25
192 193 0.808125 TACCGCGTAACGTGTACCAT 59.192 50.000 4.92 0.00 41.42 3.55
195 196 2.046313 CCGCGTAACGTGTACCATATC 58.954 52.381 4.92 0.00 41.42 1.63
197 198 2.465109 CGCGTAACGTGTACCATATCAC 59.535 50.000 0.00 0.00 36.87 3.06
198 199 3.699067 GCGTAACGTGTACCATATCACT 58.301 45.455 0.00 0.00 33.07 3.41
200 201 5.273170 GCGTAACGTGTACCATATCACTAA 58.727 41.667 0.00 0.00 33.07 2.24
201 202 5.172053 GCGTAACGTGTACCATATCACTAAC 59.828 44.000 0.00 0.00 33.07 2.34
297 645 5.066593 GGATACCTTCCCTGCTAAGATTTG 58.933 45.833 0.00 0.00 38.75 2.32
300 648 3.330701 ACCTTCCCTGCTAAGATTTGACA 59.669 43.478 0.00 0.00 0.00 3.58
312 660 8.412456 TGCTAAGATTTGACAGTGAAATGAAAA 58.588 29.630 2.31 0.00 0.00 2.29
321 669 6.144078 ACAGTGAAATGAAAACCTGTTACC 57.856 37.500 0.00 0.00 0.00 2.85
329 677 1.997256 AAACCTGTTACCGGCCACCA 61.997 55.000 0.00 0.00 0.00 4.17
496 869 2.401766 AAAATCTGCTCCGCTGCCG 61.402 57.895 0.00 0.00 0.00 5.69
551 933 3.053693 CCCAACCCAACCATCTCAATCTA 60.054 47.826 0.00 0.00 0.00 1.98
552 934 4.386761 CCCAACCCAACCATCTCAATCTAT 60.387 45.833 0.00 0.00 0.00 1.98
554 936 5.398353 CCAACCCAACCATCTCAATCTATCT 60.398 44.000 0.00 0.00 0.00 1.98
555 937 5.559148 ACCCAACCATCTCAATCTATCTC 57.441 43.478 0.00 0.00 0.00 2.75
556 938 4.349342 ACCCAACCATCTCAATCTATCTCC 59.651 45.833 0.00 0.00 0.00 3.71
559 941 4.219392 ACCATCTCAATCTATCTCCCCA 57.781 45.455 0.00 0.00 0.00 4.96
560 942 4.166539 ACCATCTCAATCTATCTCCCCAG 58.833 47.826 0.00 0.00 0.00 4.45
571 953 2.656947 TCTCCCCAGACCAAACAAAG 57.343 50.000 0.00 0.00 0.00 2.77
600 1008 2.202096 CAAACGCAGCTTCGCTCG 60.202 61.111 5.45 0.00 36.40 5.03
617 1025 3.316278 GCTCGCTCGCTCGCTTAC 61.316 66.667 0.00 0.00 0.00 2.34
644 1052 0.108585 TCGTTTCTTTCCTGCCTGCT 59.891 50.000 0.00 0.00 0.00 4.24
645 1053 0.519077 CGTTTCTTTCCTGCCTGCTC 59.481 55.000 0.00 0.00 0.00 4.26
646 1054 0.884514 GTTTCTTTCCTGCCTGCTCC 59.115 55.000 0.00 0.00 0.00 4.70
647 1055 0.773644 TTTCTTTCCTGCCTGCTCCT 59.226 50.000 0.00 0.00 0.00 3.69
649 1057 1.077858 CTTTCCTGCCTGCTCCTCC 60.078 63.158 0.00 0.00 0.00 4.30
650 1058 1.539869 TTTCCTGCCTGCTCCTCCT 60.540 57.895 0.00 0.00 0.00 3.69
656 1071 2.588989 CCTGCTCCTCCTCTTGCC 59.411 66.667 0.00 0.00 0.00 4.52
692 1107 6.379579 TCTCTAGAGTTTTATATTCCCCCGT 58.620 40.000 19.21 0.00 0.00 5.28
846 1261 4.250431 AGCACGCAACGCACAACC 62.250 61.111 0.00 0.00 0.00 3.77
870 1285 2.353208 GGGAGAGAGATCACACACACAC 60.353 54.545 0.00 0.00 0.00 3.82
871 1286 2.353208 GGAGAGAGATCACACACACACC 60.353 54.545 0.00 0.00 0.00 4.16
989 1417 0.673985 CCAACGATCCGAGGAGCATA 59.326 55.000 8.19 0.00 0.00 3.14
1015 1443 0.179065 CGCAATGAGATCAGGGAGCA 60.179 55.000 0.00 0.00 0.00 4.26
1052 1498 3.507009 GCTGCTGCTAGTGCTGGC 61.507 66.667 8.53 0.39 40.48 4.85
1054 1500 4.765449 TGCTGCTAGTGCTGGCGG 62.765 66.667 11.34 11.34 44.95 6.13
1059 1505 2.816958 CTAGTGCTGGCGGTGCTG 60.817 66.667 0.00 0.00 0.00 4.41
1467 1919 2.048603 GTGGGCCGAGGTACGTACT 61.049 63.158 24.07 11.06 40.78 2.73
1469 1921 2.484928 GGGCCGAGGTACGTACTCC 61.485 68.421 24.07 16.15 40.78 3.85
1470 1922 1.750399 GGCCGAGGTACGTACTCCA 60.750 63.158 24.07 0.00 40.78 3.86
1471 1923 1.431036 GCCGAGGTACGTACTCCAC 59.569 63.158 24.07 8.50 40.78 4.02
1618 2258 3.186409 CAGCGATCGTTCCAAGAAAGAAA 59.814 43.478 17.81 0.00 0.00 2.52
1619 2259 3.433615 AGCGATCGTTCCAAGAAAGAAAG 59.566 43.478 17.81 0.00 0.00 2.62
1620 2260 3.432252 GCGATCGTTCCAAGAAAGAAAGA 59.568 43.478 17.81 0.00 36.42 2.52
1621 2261 4.666908 GCGATCGTTCCAAGAAAGAAAGAC 60.667 45.833 17.81 0.00 35.14 3.01
1641 2281 5.976458 AGACAGAGAGAGACCAATTCAATC 58.024 41.667 0.00 0.00 0.00 2.67
1660 2305 1.757118 TCATGCACACCTAGCTACCTC 59.243 52.381 0.00 0.00 0.00 3.85
1662 2307 1.227002 GCACACCTAGCTACCTCGC 60.227 63.158 0.00 0.00 0.00 5.03
1780 2425 7.502895 GGTTAGGAGAGAAAAGAAAAAGGTTCT 59.497 37.037 0.00 0.00 33.07 3.01
1781 2426 8.904834 GTTAGGAGAGAAAAGAAAAAGGTTCTT 58.095 33.333 0.00 0.00 40.20 2.52
1859 2505 3.781162 GTACCAACGAACGGCGGC 61.781 66.667 13.24 0.00 46.49 6.53
1860 2506 4.296593 TACCAACGAACGGCGGCA 62.297 61.111 13.24 0.00 46.49 5.69
1863 2509 2.735478 CAACGAACGGCGGCACTA 60.735 61.111 13.24 0.00 46.49 2.74
1864 2510 2.029369 AACGAACGGCGGCACTAA 59.971 55.556 13.24 0.00 46.49 2.24
1865 2511 1.594836 AACGAACGGCGGCACTAAA 60.595 52.632 13.24 0.00 46.49 1.85
1866 2512 1.834458 AACGAACGGCGGCACTAAAC 61.834 55.000 13.24 0.00 46.49 2.01
1867 2513 2.025418 CGAACGGCGGCACTAAACT 61.025 57.895 13.24 0.00 36.03 2.66
1868 2514 0.733566 CGAACGGCGGCACTAAACTA 60.734 55.000 13.24 0.00 36.03 2.24
1869 2515 1.648504 GAACGGCGGCACTAAACTAT 58.351 50.000 13.24 0.00 0.00 2.12
1870 2516 2.004733 GAACGGCGGCACTAAACTATT 58.995 47.619 13.24 0.00 0.00 1.73
1871 2517 2.103537 ACGGCGGCACTAAACTATTT 57.896 45.000 13.24 0.00 0.00 1.40
1872 2518 2.429478 ACGGCGGCACTAAACTATTTT 58.571 42.857 13.24 0.00 0.00 1.82
1873 2519 2.815503 ACGGCGGCACTAAACTATTTTT 59.184 40.909 13.24 0.00 0.00 1.94
1945 2600 2.804090 GCTTCGTCGGTCGTCCAC 60.804 66.667 0.00 0.00 40.80 4.02
1972 2627 2.810486 CGAGCCGTCGGATTAATCC 58.190 57.895 22.63 22.63 42.87 3.01
2204 2862 1.296715 CCCAGCAGGTACACACTCC 59.703 63.158 0.00 0.00 0.00 3.85
2232 2936 3.414384 ACACATCGTGTACGTTGACGTG 61.414 50.000 18.48 14.93 45.56 4.49
2241 2957 2.891221 CGTTGACGTGGTGCATGCA 61.891 57.895 18.46 18.46 34.11 3.96
2243 2959 0.039256 GTTGACGTGGTGCATGCAAT 60.039 50.000 24.58 5.62 0.00 3.56
2283 2999 7.220875 GTGGAAAAATGAGAGAAAAATATCGGC 59.779 37.037 0.00 0.00 0.00 5.54
2391 3154 2.885113 GCCGGTCTTTTCATGGGC 59.115 61.111 1.90 0.00 0.00 5.36
2392 3155 1.976474 GCCGGTCTTTTCATGGGCA 60.976 57.895 1.90 0.00 40.24 5.36
2394 3157 2.021723 GCCGGTCTTTTCATGGGCATA 61.022 52.381 1.90 0.00 40.24 3.14
2395 3158 2.586425 CCGGTCTTTTCATGGGCATAT 58.414 47.619 0.00 0.00 0.00 1.78
2396 3159 2.294233 CCGGTCTTTTCATGGGCATATG 59.706 50.000 0.00 0.00 0.00 1.78
2398 3161 3.251729 CGGTCTTTTCATGGGCATATGAG 59.748 47.826 6.97 0.00 38.25 2.90
2399 3162 3.571401 GGTCTTTTCATGGGCATATGAGG 59.429 47.826 6.97 0.00 38.25 3.86
2400 3163 4.210331 GTCTTTTCATGGGCATATGAGGT 58.790 43.478 6.97 0.00 38.25 3.85
2441 3214 3.364441 TGCCGCACATGCCAAGTC 61.364 61.111 0.00 0.00 37.91 3.01
2444 3217 3.725459 CGCACATGCCAAGTCGCA 61.725 61.111 0.00 0.00 44.35 5.10
2461 3234 1.057822 CAAACAGCTCGACGCGATG 59.942 57.895 15.93 4.17 45.59 3.84
2464 3237 1.923227 AACAGCTCGACGCGATGAGA 61.923 55.000 27.70 14.44 45.59 3.27
2612 3421 3.010027 TGATTAGGTGGCCAGTTCAATCA 59.990 43.478 20.17 20.17 0.00 2.57
2617 3426 0.889994 TGGCCAGTTCAATCACATGC 59.110 50.000 0.00 0.00 0.00 4.06
2621 3430 2.159421 GCCAGTTCAATCACATGCTGAG 60.159 50.000 0.00 0.00 30.20 3.35
2664 3477 2.807631 TTAGGAAGCGGTCGTCGTGC 62.808 60.000 0.00 0.00 41.72 5.34
2685 3498 3.491447 GCCATCATGTGCTAATTGAACCC 60.491 47.826 0.00 0.00 0.00 4.11
2694 3507 2.798847 GCTAATTGAACCCGTCCGTATC 59.201 50.000 0.00 0.00 0.00 2.24
2793 3607 9.258826 GAATGATAGATACATATGCAGCCTTAG 57.741 37.037 1.58 0.00 0.00 2.18
2794 3608 7.724490 TGATAGATACATATGCAGCCTTAGT 57.276 36.000 1.58 0.00 0.00 2.24
2795 3609 8.138928 TGATAGATACATATGCAGCCTTAGTT 57.861 34.615 1.58 0.00 0.00 2.24
2849 3663 6.769608 TTTAAGCTGATGATAGTGTATGCG 57.230 37.500 0.00 0.00 0.00 4.73
2892 3710 0.385974 GTGCACGTTGGCTGATGTTC 60.386 55.000 0.00 0.00 34.04 3.18
2946 3910 3.324108 GACGGGTACAGGGGCCAA 61.324 66.667 4.39 0.00 0.00 4.52
3178 4142 2.982130 CCGCCAGAGTAAGCCACT 59.018 61.111 0.00 0.00 41.47 4.00
3181 4145 2.103042 GCCAGAGTAAGCCACTGCG 61.103 63.158 0.00 0.00 44.33 5.18
3186 4150 0.951040 GAGTAAGCCACTGCGCACTT 60.951 55.000 5.66 11.41 44.33 3.16
3190 4154 1.789078 AAGCCACTGCGCACTTTGAG 61.789 55.000 5.66 0.00 44.33 3.02
3191 4155 2.253452 CCACTGCGCACTTTGAGC 59.747 61.111 5.66 0.00 43.64 4.26
3192 4156 2.256591 CCACTGCGCACTTTGAGCT 61.257 57.895 5.66 0.00 43.72 4.09
3232 4302 3.371063 GGCCGGTCACTGACGAGA 61.371 66.667 0.00 0.00 32.65 4.04
3233 4303 2.126424 GCCGGTCACTGACGAGAC 60.126 66.667 1.90 0.00 32.65 3.36
3234 4304 2.176055 CCGGTCACTGACGAGACG 59.824 66.667 3.04 1.42 35.63 4.18
3236 4306 1.572941 CGGTCACTGACGAGACGAA 59.427 57.895 3.04 0.00 35.63 3.85
3239 4309 1.986378 GGTCACTGACGAGACGAAATG 59.014 52.381 3.04 0.00 35.63 2.32
3899 4996 2.197324 CGAGGGAGGAGAGGGAGG 59.803 72.222 0.00 0.00 0.00 4.30
3900 4997 2.387772 CGAGGGAGGAGAGGGAGGA 61.388 68.421 0.00 0.00 0.00 3.71
3901 4998 1.541672 GAGGGAGGAGAGGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
3902 4999 0.996762 GAGGGAGGAGAGGGAGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
3903 5000 0.998945 AGGGAGGAGAGGGAGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
3904 5001 1.541672 GGAGGAGAGGGAGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
3905 5002 1.541672 GAGGAGAGGGAGGAGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
3906 5003 0.996762 GAGGAGAGGGAGGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
3907 5004 0.998945 AGGAGAGGGAGGAGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
3957 5054 1.817941 CGGCCGAGGTGTAAATGGG 60.818 63.158 24.07 0.00 0.00 4.00
3976 5074 7.477945 AATGGGTTAGATAGGTTATAGGTCG 57.522 40.000 0.00 0.00 0.00 4.79
3977 5075 6.204852 TGGGTTAGATAGGTTATAGGTCGA 57.795 41.667 0.00 0.00 0.00 4.20
4047 5149 5.560722 TTGGAGGTTTCTTGATACACAGA 57.439 39.130 0.00 0.00 0.00 3.41
4103 5205 1.792757 AAGGGCTGGAGGCATTGACA 61.793 55.000 0.00 0.00 42.91 3.58
4133 5235 5.364778 TGTAAATTCGCTGCCTGTACATAT 58.635 37.500 0.00 0.00 0.00 1.78
4184 5291 6.476243 TCGGTGATTCTAGTTTGTTTAAGC 57.524 37.500 0.00 0.00 0.00 3.09
4185 5292 6.228258 TCGGTGATTCTAGTTTGTTTAAGCT 58.772 36.000 0.00 0.00 0.00 3.74
4187 5294 6.797033 CGGTGATTCTAGTTTGTTTAAGCTTG 59.203 38.462 9.86 0.00 0.00 4.01
4188 5295 6.582672 GGTGATTCTAGTTTGTTTAAGCTTGC 59.417 38.462 9.86 0.00 0.00 4.01
4190 5297 7.647715 GTGATTCTAGTTTGTTTAAGCTTGCAA 59.352 33.333 9.86 8.87 0.00 4.08
4192 5299 6.935741 TCTAGTTTGTTTAAGCTTGCAAGA 57.064 33.333 30.39 6.42 0.00 3.02
4193 5300 6.959361 TCTAGTTTGTTTAAGCTTGCAAGAG 58.041 36.000 30.39 12.94 0.00 2.85
4194 5301 5.835113 AGTTTGTTTAAGCTTGCAAGAGA 57.165 34.783 30.39 10.81 0.00 3.10
4198 5305 4.067896 TGTTTAAGCTTGCAAGAGAGGAG 58.932 43.478 30.39 2.33 0.00 3.69
4199 5306 4.068599 GTTTAAGCTTGCAAGAGAGGAGT 58.931 43.478 30.39 8.17 0.00 3.85
4200 5307 2.470983 AAGCTTGCAAGAGAGGAGTC 57.529 50.000 30.39 9.39 0.00 3.36
4202 5309 2.813907 AGCTTGCAAGAGAGGAGTCTA 58.186 47.619 30.39 0.00 30.97 2.59
4203 5310 3.373830 AGCTTGCAAGAGAGGAGTCTAT 58.626 45.455 30.39 0.00 30.97 1.98
4204 5311 3.774216 AGCTTGCAAGAGAGGAGTCTATT 59.226 43.478 30.39 0.00 34.43 1.73
4210 5317 5.667539 CAAGAGAGGAGTCTATTGTCCAA 57.332 43.478 2.31 0.00 43.98 3.53
4212 5319 3.704061 AGAGAGGAGTCTATTGTCCAAGC 59.296 47.826 0.00 0.00 35.02 4.01
4213 5320 3.704061 GAGAGGAGTCTATTGTCCAAGCT 59.296 47.826 0.00 0.00 35.02 3.74
4214 5321 4.100373 AGAGGAGTCTATTGTCCAAGCTT 58.900 43.478 0.00 0.00 35.02 3.74
4215 5322 4.081198 AGAGGAGTCTATTGTCCAAGCTTG 60.081 45.833 19.93 19.93 35.02 4.01
4216 5323 3.840666 AGGAGTCTATTGTCCAAGCTTGA 59.159 43.478 28.05 11.04 35.02 3.02
4219 5326 5.473504 GGAGTCTATTGTCCAAGCTTGAAAA 59.526 40.000 28.05 17.56 32.55 2.29
4222 5329 6.716628 AGTCTATTGTCCAAGCTTGAAAATGA 59.283 34.615 28.05 12.86 0.00 2.57
4223 5330 7.025963 GTCTATTGTCCAAGCTTGAAAATGAG 58.974 38.462 28.05 16.37 0.00 2.90
4224 5331 6.942005 TCTATTGTCCAAGCTTGAAAATGAGA 59.058 34.615 28.05 18.20 0.00 3.27
4226 5333 4.464008 TGTCCAAGCTTGAAAATGAGAGT 58.536 39.130 28.05 0.00 0.00 3.24
4227 5334 4.889409 TGTCCAAGCTTGAAAATGAGAGTT 59.111 37.500 28.05 0.00 0.00 3.01
4228 5335 5.218139 GTCCAAGCTTGAAAATGAGAGTTG 58.782 41.667 28.05 6.11 0.00 3.16
4229 5336 4.279169 TCCAAGCTTGAAAATGAGAGTTGG 59.721 41.667 28.05 6.49 34.46 3.77
4230 5337 3.930634 AGCTTGAAAATGAGAGTTGGC 57.069 42.857 0.00 0.00 0.00 4.52
4231 5338 2.560105 AGCTTGAAAATGAGAGTTGGCC 59.440 45.455 0.00 0.00 0.00 5.36
4232 5339 2.297033 GCTTGAAAATGAGAGTTGGCCA 59.703 45.455 0.00 0.00 0.00 5.36
4234 5341 1.879380 TGAAAATGAGAGTTGGCCACG 59.121 47.619 3.88 0.00 0.00 4.94
4236 5343 2.270352 AAATGAGAGTTGGCCACGAA 57.730 45.000 3.88 0.00 0.00 3.85
4237 5344 2.270352 AATGAGAGTTGGCCACGAAA 57.730 45.000 3.88 0.00 0.00 3.46
4239 5346 0.250295 TGAGAGTTGGCCACGAAAGG 60.250 55.000 3.88 0.00 0.00 3.11
4241 5348 0.035458 AGAGTTGGCCACGAAAGGAG 59.965 55.000 3.88 0.00 0.00 3.69
4243 5350 0.250338 AGTTGGCCACGAAAGGAGAC 60.250 55.000 3.88 0.00 0.00 3.36
4245 5352 3.119096 GGCCACGAAAGGAGACGC 61.119 66.667 0.00 0.00 0.00 5.19
4246 5353 3.479269 GCCACGAAAGGAGACGCG 61.479 66.667 3.53 3.53 0.00 6.01
4248 5355 2.087009 CCACGAAAGGAGACGCGAC 61.087 63.158 15.93 6.86 0.00 5.19
4251 5358 1.371267 CGAAAGGAGACGCGACACA 60.371 57.895 15.93 0.00 0.00 3.72
4252 5359 0.937699 CGAAAGGAGACGCGACACAA 60.938 55.000 15.93 0.00 0.00 3.33
4253 5360 0.507358 GAAAGGAGACGCGACACAAC 59.493 55.000 15.93 0.00 0.00 3.32
4254 5361 0.179094 AAAGGAGACGCGACACAACA 60.179 50.000 15.93 0.00 0.00 3.33
4255 5362 0.179094 AAGGAGACGCGACACAACAA 60.179 50.000 15.93 0.00 0.00 2.83
4257 5364 0.042448 GGAGACGCGACACAACAAAC 60.042 55.000 15.93 0.00 0.00 2.93
4258 5365 0.381428 GAGACGCGACACAACAAACG 60.381 55.000 15.93 0.00 0.00 3.60
4259 5366 1.996713 GACGCGACACAACAAACGC 60.997 57.895 15.93 0.00 46.08 4.84
4265 5372 2.445316 CGACACAACAAACGCATTCAA 58.555 42.857 0.00 0.00 0.00 2.69
4266 5373 2.848887 CGACACAACAAACGCATTCAAA 59.151 40.909 0.00 0.00 0.00 2.69
4267 5374 3.485378 CGACACAACAAACGCATTCAAAT 59.515 39.130 0.00 0.00 0.00 2.32
4268 5375 4.672862 CGACACAACAAACGCATTCAAATA 59.327 37.500 0.00 0.00 0.00 1.40
4270 5377 4.981674 ACACAACAAACGCATTCAAATAGG 59.018 37.500 0.00 0.00 0.00 2.57
4272 5379 5.343058 CACAACAAACGCATTCAAATAGGAG 59.657 40.000 0.00 0.00 0.00 3.69
4275 5382 4.156008 ACAAACGCATTCAAATAGGAGGAC 59.844 41.667 0.00 0.00 0.00 3.85
4276 5383 3.627395 ACGCATTCAAATAGGAGGACA 57.373 42.857 0.00 0.00 0.00 4.02
4277 5384 3.950397 ACGCATTCAAATAGGAGGACAA 58.050 40.909 0.00 0.00 0.00 3.18
4278 5385 4.526970 ACGCATTCAAATAGGAGGACAAT 58.473 39.130 0.00 0.00 0.00 2.71
4279 5386 5.680619 ACGCATTCAAATAGGAGGACAATA 58.319 37.500 0.00 0.00 0.00 1.90
4280 5387 6.299141 ACGCATTCAAATAGGAGGACAATAT 58.701 36.000 0.00 0.00 0.00 1.28
4281 5388 6.205464 ACGCATTCAAATAGGAGGACAATATG 59.795 38.462 0.00 0.00 0.00 1.78
4282 5389 6.427853 CGCATTCAAATAGGAGGACAATATGA 59.572 38.462 0.00 0.00 0.00 2.15
4283 5390 7.360691 CGCATTCAAATAGGAGGACAATATGAG 60.361 40.741 0.00 0.00 0.00 2.90
4285 5392 6.439636 TCAAATAGGAGGACAATATGAGGG 57.560 41.667 0.00 0.00 0.00 4.30
4286 5393 4.917906 AATAGGAGGACAATATGAGGGC 57.082 45.455 0.00 0.00 0.00 5.19
4288 5395 0.035458 GGAGGACAATATGAGGGCCG 59.965 60.000 0.00 0.00 0.00 6.13
4324 5559 8.641499 AAAATGAAAATGAAACTAGCAACGAA 57.359 26.923 0.00 0.00 0.00 3.85
4327 5562 5.974751 TGAAAATGAAACTAGCAACGAAACC 59.025 36.000 0.00 0.00 0.00 3.27
4329 5564 5.767816 AATGAAACTAGCAACGAAACCTT 57.232 34.783 0.00 0.00 0.00 3.50
4331 5566 4.193090 TGAAACTAGCAACGAAACCTTCA 58.807 39.130 0.00 0.00 0.00 3.02
4337 5572 3.214328 AGCAACGAAACCTTCACTTCAT 58.786 40.909 0.00 0.00 0.00 2.57
4338 5573 3.251004 AGCAACGAAACCTTCACTTCATC 59.749 43.478 0.00 0.00 0.00 2.92
4343 5578 5.607477 ACGAAACCTTCACTTCATCAAGTA 58.393 37.500 0.00 0.00 41.24 2.24
4349 5584 4.154918 CCTTCACTTCATCAAGTAACCAGC 59.845 45.833 0.00 0.00 41.24 4.85
4354 5589 6.995686 TCACTTCATCAAGTAACCAGCTTTTA 59.004 34.615 0.00 0.00 41.24 1.52
4355 5590 7.041372 TCACTTCATCAAGTAACCAGCTTTTAC 60.041 37.037 6.83 6.83 41.24 2.01
4356 5591 6.770785 ACTTCATCAAGTAACCAGCTTTTACA 59.229 34.615 14.62 0.00 41.39 2.41
4357 5592 7.448469 ACTTCATCAAGTAACCAGCTTTTACAT 59.552 33.333 14.62 3.23 41.39 2.29
4358 5593 7.144722 TCATCAAGTAACCAGCTTTTACATG 57.855 36.000 14.62 13.01 32.70 3.21
4359 5594 5.957842 TCAAGTAACCAGCTTTTACATGG 57.042 39.130 15.32 3.11 40.10 3.66
4362 5597 4.079253 AGTAACCAGCTTTTACATGGGTG 58.921 43.478 14.62 0.00 38.48 4.61
4367 5602 0.532115 GCTTTTACATGGGTGCCCTG 59.468 55.000 8.91 6.94 36.94 4.45
4380 5615 2.356135 GTGCCCTGTACAATCATTCGT 58.644 47.619 0.00 0.00 0.00 3.85
4385 5620 4.814234 GCCCTGTACAATCATTCGTGATTA 59.186 41.667 0.00 0.00 36.82 1.75
4388 5623 7.172532 GCCCTGTACAATCATTCGTGATTATAA 59.827 37.037 0.00 0.00 36.82 0.98
4403 5638 8.812972 TCGTGATTATAATTAGGGTCTGCTATT 58.187 33.333 9.30 0.00 0.00 1.73
4412 5649 4.301072 AGGGTCTGCTATTTTAACAGCA 57.699 40.909 0.00 0.00 45.23 4.41
4416 5653 6.211384 AGGGTCTGCTATTTTAACAGCAAAAT 59.789 34.615 0.00 0.00 46.55 1.82
4429 5666 8.592105 TTAACAGCAAAATTTTGAATCAGAGG 57.408 30.769 30.40 13.48 40.55 3.69
4435 5672 6.479660 GCAAAATTTTGAATCAGAGGACACAA 59.520 34.615 30.40 0.00 40.55 3.33
4436 5673 7.306983 GCAAAATTTTGAATCAGAGGACACAAG 60.307 37.037 30.40 2.04 40.55 3.16
4437 5674 6.966534 AATTTTGAATCAGAGGACACAAGT 57.033 33.333 0.00 0.00 0.00 3.16
4439 5676 7.678947 ATTTTGAATCAGAGGACACAAGTAG 57.321 36.000 0.00 0.00 0.00 2.57
4440 5677 4.193826 TGAATCAGAGGACACAAGTAGC 57.806 45.455 0.00 0.00 0.00 3.58
4448 5685 1.078426 ACACAAGTAGCGATGCCCC 60.078 57.895 0.00 0.00 0.00 5.80
4449 5686 2.173669 CACAAGTAGCGATGCCCCG 61.174 63.158 0.00 0.00 0.00 5.73
4450 5687 2.186903 CAAGTAGCGATGCCCCGT 59.813 61.111 0.00 0.00 0.00 5.28
4464 5714 4.840716 TGCCCCGTAAAACTAGGAAATA 57.159 40.909 0.00 0.00 0.00 1.40
4466 5716 5.187687 TGCCCCGTAAAACTAGGAAATAAG 58.812 41.667 0.00 0.00 0.00 1.73
4484 5734 5.998454 ATAAGAATCCAACGATGAAGCAG 57.002 39.130 0.00 0.00 0.00 4.24
4485 5735 2.636830 AGAATCCAACGATGAAGCAGG 58.363 47.619 0.00 0.00 0.00 4.85
4486 5736 2.237143 AGAATCCAACGATGAAGCAGGA 59.763 45.455 0.00 0.00 0.00 3.86
4487 5737 2.787473 ATCCAACGATGAAGCAGGAA 57.213 45.000 0.00 0.00 0.00 3.36
4488 5738 2.099141 TCCAACGATGAAGCAGGAAG 57.901 50.000 0.00 0.00 0.00 3.46
4501 5751 4.699925 AGCAGGAAGTTACACAAAGGTA 57.300 40.909 0.00 0.00 0.00 3.08
4503 5753 4.347000 AGCAGGAAGTTACACAAAGGTAGA 59.653 41.667 0.00 0.00 0.00 2.59
4504 5754 5.013183 AGCAGGAAGTTACACAAAGGTAGAT 59.987 40.000 0.00 0.00 0.00 1.98
4505 5755 5.122396 GCAGGAAGTTACACAAAGGTAGATG 59.878 44.000 0.00 0.00 0.00 2.90
4516 5766 5.707298 CACAAAGGTAGATGGAAGAACACAT 59.293 40.000 0.00 0.00 0.00 3.21
4518 5768 7.390440 CACAAAGGTAGATGGAAGAACACATAA 59.610 37.037 0.00 0.00 0.00 1.90
4519 5769 7.942341 ACAAAGGTAGATGGAAGAACACATAAA 59.058 33.333 0.00 0.00 0.00 1.40
4520 5770 8.960591 CAAAGGTAGATGGAAGAACACATAAAT 58.039 33.333 0.00 0.00 0.00 1.40
4580 5830 8.826765 AGATCACTAAATTTCTTTACAGAGGGA 58.173 33.333 0.00 0.00 0.00 4.20
4581 5831 9.103861 GATCACTAAATTTCTTTACAGAGGGAG 57.896 37.037 0.00 0.00 0.00 4.30
4593 5843 6.531503 TTACAGAGGGAGTATCAACAAGAG 57.468 41.667 0.00 0.00 36.25 2.85
4598 5848 3.584848 AGGGAGTATCAACAAGAGTGCTT 59.415 43.478 0.00 0.00 36.25 3.91
4600 5850 5.426833 AGGGAGTATCAACAAGAGTGCTTAT 59.573 40.000 0.00 0.00 36.25 1.73
4626 5876 5.801350 TTCTCGTGGCTAATCAAAGAATG 57.199 39.130 0.00 0.00 0.00 2.67
4669 5919 3.244875 ACAACACCAAGCATATCACCTCA 60.245 43.478 0.00 0.00 0.00 3.86
4680 5930 8.586273 CAAGCATATCACCTCAAAATAAAAACG 58.414 33.333 0.00 0.00 0.00 3.60
4710 5960 4.884744 TCGTGAGGTCAAAAAGAATGGAAA 59.115 37.500 0.00 0.00 0.00 3.13
4852 6102 2.349722 CGAGAGAGCATCAGACTGATCG 60.350 54.545 15.24 10.98 34.28 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.067142 TGGTCAATCGTGTAGTCAGCC 60.067 52.381 0.00 0.00 0.00 4.85
56 57 4.939368 TGTGTTTGTCGGGGGCGG 62.939 66.667 0.00 0.00 0.00 6.13
115 116 6.588719 AGGCAAATTATAAGCTTTGTGTGA 57.411 33.333 3.20 0.00 35.33 3.58
191 192 6.094881 CCCGTGGAAAAACATGTTAGTGATAT 59.905 38.462 12.39 0.00 0.00 1.63
192 193 5.413213 CCCGTGGAAAAACATGTTAGTGATA 59.587 40.000 12.39 0.00 0.00 2.15
195 196 3.566322 TCCCGTGGAAAAACATGTTAGTG 59.434 43.478 12.39 0.00 0.00 2.74
197 198 3.190535 CCTCCCGTGGAAAAACATGTTAG 59.809 47.826 12.39 1.10 0.00 2.34
198 199 3.150767 CCTCCCGTGGAAAAACATGTTA 58.849 45.455 12.39 0.00 0.00 2.41
200 201 1.133606 ACCTCCCGTGGAAAAACATGT 60.134 47.619 0.00 0.00 0.00 3.21
201 202 1.616159 ACCTCCCGTGGAAAAACATG 58.384 50.000 0.00 0.00 0.00 3.21
279 627 3.944015 CTGTCAAATCTTAGCAGGGAAGG 59.056 47.826 0.00 0.00 0.00 3.46
283 631 3.942829 TCACTGTCAAATCTTAGCAGGG 58.057 45.455 0.00 0.00 32.33 4.45
297 645 6.206498 GGTAACAGGTTTTCATTTCACTGTC 58.794 40.000 0.00 0.00 38.13 3.51
300 648 4.277423 CCGGTAACAGGTTTTCATTTCACT 59.723 41.667 0.00 0.00 0.00 3.41
312 660 2.850130 TGGTGGCCGGTAACAGGT 60.850 61.111 1.90 0.00 33.54 4.00
355 703 0.458025 GCGTAGTTCCTTCGGGACAG 60.458 60.000 0.00 0.00 44.98 3.51
358 706 2.703798 CGGCGTAGTTCCTTCGGGA 61.704 63.158 0.00 0.00 43.37 5.14
551 933 2.225117 CCTTTGTTTGGTCTGGGGAGAT 60.225 50.000 0.00 0.00 0.00 2.75
552 934 1.144913 CCTTTGTTTGGTCTGGGGAGA 59.855 52.381 0.00 0.00 0.00 3.71
554 936 1.227249 TCCTTTGTTTGGTCTGGGGA 58.773 50.000 0.00 0.00 0.00 4.81
555 937 2.309136 ATCCTTTGTTTGGTCTGGGG 57.691 50.000 0.00 0.00 0.00 4.96
556 938 3.761897 TGTATCCTTTGTTTGGTCTGGG 58.238 45.455 0.00 0.00 0.00 4.45
559 941 5.069914 GGGTTTTGTATCCTTTGTTTGGTCT 59.930 40.000 0.00 0.00 0.00 3.85
560 942 5.163395 TGGGTTTTGTATCCTTTGTTTGGTC 60.163 40.000 0.00 0.00 0.00 4.02
571 953 2.924880 GCTGCGTTTGGGTTTTGTATCC 60.925 50.000 0.00 0.00 0.00 2.59
600 1008 3.316278 GTAAGCGAGCGAGCGAGC 61.316 66.667 9.12 9.12 43.00 5.03
615 1023 5.698832 CAGGAAAGAAACGATGCAAATGTA 58.301 37.500 0.00 0.00 0.00 2.29
617 1025 3.365820 GCAGGAAAGAAACGATGCAAATG 59.634 43.478 0.00 0.00 33.92 2.32
644 1052 2.856760 AGTAGATGGCAAGAGGAGGA 57.143 50.000 0.00 0.00 0.00 3.71
645 1053 3.571590 AGTAGTAGATGGCAAGAGGAGG 58.428 50.000 0.00 0.00 0.00 4.30
646 1054 6.245408 AGATAGTAGTAGATGGCAAGAGGAG 58.755 44.000 0.00 0.00 0.00 3.69
647 1055 6.044989 AGAGATAGTAGTAGATGGCAAGAGGA 59.955 42.308 0.00 0.00 0.00 3.71
649 1057 8.318412 TCTAGAGATAGTAGTAGATGGCAAGAG 58.682 40.741 0.00 0.00 0.00 2.85
650 1058 8.208575 TCTAGAGATAGTAGTAGATGGCAAGA 57.791 38.462 0.00 0.00 0.00 3.02
846 1261 1.064946 GTGTGATCTCTCTCCCGCG 59.935 63.158 0.00 0.00 0.00 6.46
870 1285 3.989698 CTGTGTGCGAGCGTAGGGG 62.990 68.421 0.00 0.00 0.00 4.79
871 1286 2.507102 CTGTGTGCGAGCGTAGGG 60.507 66.667 0.00 0.00 0.00 3.53
969 1395 2.586357 GCTCCTCGGATCGTTGGC 60.586 66.667 0.00 0.00 0.00 4.52
975 1403 2.999355 GCAAGAATATGCTCCTCGGATC 59.001 50.000 0.00 0.00 43.06 3.36
989 1417 2.617308 CCTGATCTCATTGCGCAAGAAT 59.383 45.455 28.62 17.39 43.02 2.40
1035 1463 3.507009 GCCAGCACTAGCAGCAGC 61.507 66.667 10.05 8.35 45.49 5.25
1036 1464 3.193614 CGCCAGCACTAGCAGCAG 61.194 66.667 10.05 2.38 45.49 4.24
1039 1467 2.816958 CACCGCCAGCACTAGCAG 60.817 66.667 0.00 0.00 45.49 4.24
1041 1469 4.767255 AGCACCGCCAGCACTAGC 62.767 66.667 0.00 0.00 42.56 3.42
1493 1960 4.152248 CAGGGGATGGAGGTGACA 57.848 61.111 0.00 0.00 0.00 3.58
1523 2156 5.582689 TGTCATGATCGTATCTGAACACT 57.417 39.130 0.00 0.00 0.00 3.55
1618 2258 5.483231 TGATTGAATTGGTCTCTCTCTGTCT 59.517 40.000 0.00 0.00 0.00 3.41
1619 2259 5.728471 TGATTGAATTGGTCTCTCTCTGTC 58.272 41.667 0.00 0.00 0.00 3.51
1620 2260 5.752036 TGATTGAATTGGTCTCTCTCTGT 57.248 39.130 0.00 0.00 0.00 3.41
1621 2261 5.007823 GCATGATTGAATTGGTCTCTCTCTG 59.992 44.000 0.00 0.00 0.00 3.35
1641 2281 1.536922 CGAGGTAGCTAGGTGTGCATG 60.537 57.143 4.27 0.00 0.00 4.06
1660 2305 4.604843 TCTAATTGATCAAAGTGCAGCG 57.395 40.909 13.09 0.00 0.00 5.18
1662 2307 8.456471 TGAAGAATCTAATTGATCAAAGTGCAG 58.544 33.333 13.09 5.64 33.57 4.41
1780 2425 5.746245 CGCTTGTTGTTATTCACCAGAAAAA 59.254 36.000 0.00 0.00 37.29 1.94
1781 2426 5.163602 ACGCTTGTTGTTATTCACCAGAAAA 60.164 36.000 0.00 0.00 37.29 2.29
1872 2518 2.924290 GTTTAGTGCAACCACGCAAAAA 59.076 40.909 0.00 0.00 45.14 1.94
1873 2519 2.164624 AGTTTAGTGCAACCACGCAAAA 59.835 40.909 0.00 0.00 45.14 2.44
1874 2520 1.746220 AGTTTAGTGCAACCACGCAAA 59.254 42.857 0.00 0.00 45.14 3.68
1875 2521 1.384525 AGTTTAGTGCAACCACGCAA 58.615 45.000 0.00 0.00 45.14 4.85
1876 2522 2.242047 TAGTTTAGTGCAACCACGCA 57.758 45.000 0.00 0.00 46.62 5.24
1877 2523 3.824414 AATAGTTTAGTGCAACCACGC 57.176 42.857 0.00 0.00 46.62 5.34
1878 2524 5.997385 AGAAAATAGTTTAGTGCAACCACG 58.003 37.500 0.00 0.00 46.62 4.94
1879 2525 6.379386 GGAGAAAATAGTTTAGTGCAACCAC 58.621 40.000 0.00 0.00 42.39 4.16
1880 2526 5.475564 GGGAGAAAATAGTTTAGTGCAACCA 59.524 40.000 0.00 0.00 37.80 3.67
1881 2527 5.475564 TGGGAGAAAATAGTTTAGTGCAACC 59.524 40.000 0.00 0.00 37.80 3.77
1882 2528 6.016610 TGTGGGAGAAAATAGTTTAGTGCAAC 60.017 38.462 0.00 0.00 0.00 4.17
1883 2529 6.065374 TGTGGGAGAAAATAGTTTAGTGCAA 58.935 36.000 0.00 0.00 0.00 4.08
1884 2530 5.626142 TGTGGGAGAAAATAGTTTAGTGCA 58.374 37.500 0.00 0.00 0.00 4.57
1954 2609 2.810486 GGATTAATCCGACGGCTCG 58.190 57.895 18.61 0.00 37.19 5.03
1972 2627 4.022849 CACCTGTTCAAGAAAAAGCTAGGG 60.023 45.833 0.00 0.00 0.00 3.53
2241 2957 2.571212 TCCACACGAGACTTTGCAATT 58.429 42.857 0.00 0.00 0.00 2.32
2243 2959 2.031258 TTCCACACGAGACTTTGCAA 57.969 45.000 0.00 0.00 0.00 4.08
2297 3013 2.434336 AGACAGACTGGTGCTACACAAA 59.566 45.455 7.51 0.00 35.86 2.83
2391 3154 6.808008 AGAAAAGAACACACACCTCATATG 57.192 37.500 0.00 0.00 0.00 1.78
2392 3155 6.772716 ACAAGAAAAGAACACACACCTCATAT 59.227 34.615 0.00 0.00 0.00 1.78
2394 3157 4.949856 ACAAGAAAAGAACACACACCTCAT 59.050 37.500 0.00 0.00 0.00 2.90
2395 3158 4.155826 CACAAGAAAAGAACACACACCTCA 59.844 41.667 0.00 0.00 0.00 3.86
2396 3159 4.662145 CACAAGAAAAGAACACACACCTC 58.338 43.478 0.00 0.00 0.00 3.85
2398 3161 3.179048 GCACAAGAAAAGAACACACACC 58.821 45.455 0.00 0.00 0.00 4.16
2399 3162 3.179048 GGCACAAGAAAAGAACACACAC 58.821 45.455 0.00 0.00 0.00 3.82
2400 3163 2.165437 GGGCACAAGAAAAGAACACACA 59.835 45.455 0.00 0.00 0.00 3.72
2444 3217 1.073216 CTCATCGCGTCGAGCTGTTT 61.073 55.000 5.77 0.00 45.59 2.83
2461 3234 2.767415 GATCGATCGACGCCGGTCTC 62.767 65.000 22.06 7.68 43.41 3.36
2664 3477 3.243168 CGGGTTCAATTAGCACATGATGG 60.243 47.826 0.00 0.00 0.00 3.51
2685 3498 1.153706 GTGGGTGTGGATACGGACG 60.154 63.158 0.00 0.00 42.51 4.79
2694 3507 4.666253 CCAGGCCAGTGGGTGTGG 62.666 72.222 12.15 0.00 38.21 4.17
2787 3601 8.693120 AAAGCCCTAAGAATAATAACTAAGGC 57.307 34.615 0.00 0.00 35.74 4.35
2831 3645 4.742417 AGATCGCATACACTATCATCAGC 58.258 43.478 0.00 0.00 0.00 4.26
2849 3663 7.220300 CACGTACATCCAACAACTAGTAAGATC 59.780 40.741 0.00 0.00 0.00 2.75
2946 3910 1.946156 CGCGATGCTGCTGTCGTAT 60.946 57.895 22.02 0.00 39.87 3.06
3178 4142 1.362768 CTGATAGCTCAAAGTGCGCA 58.637 50.000 5.66 5.66 35.28 6.09
3181 4145 2.977914 TCACCTGATAGCTCAAAGTGC 58.022 47.619 0.00 0.00 36.42 4.40
3186 4150 3.519107 TGATGGTTCACCTGATAGCTCAA 59.481 43.478 0.00 0.00 36.82 3.02
3215 4285 3.371063 TCTCGTCAGTGACCGGCC 61.371 66.667 17.57 0.00 0.00 6.13
3216 4286 2.126424 GTCTCGTCAGTGACCGGC 60.126 66.667 17.57 6.86 35.49 6.13
3217 4287 1.848932 TTCGTCTCGTCAGTGACCGG 61.849 60.000 17.57 0.00 37.53 5.28
3218 4288 0.040692 TTTCGTCTCGTCAGTGACCG 60.041 55.000 17.57 14.41 37.53 4.79
3219 4289 1.986378 CATTTCGTCTCGTCAGTGACC 59.014 52.381 17.57 2.54 37.53 4.02
3223 4293 4.988540 TGAAAATCATTTCGTCTCGTCAGT 59.011 37.500 0.00 0.00 46.47 3.41
3226 4296 4.092091 AGCTGAAAATCATTTCGTCTCGTC 59.908 41.667 0.00 0.00 46.47 4.20
3227 4297 3.997021 AGCTGAAAATCATTTCGTCTCGT 59.003 39.130 0.00 0.00 46.47 4.18
3229 4299 4.094212 GCAGCTGAAAATCATTTCGTCTC 58.906 43.478 20.43 0.00 46.47 3.36
3230 4300 3.755378 AGCAGCTGAAAATCATTTCGTCT 59.245 39.130 20.43 0.00 46.47 4.18
3232 4302 3.829948 CAGCAGCTGAAAATCATTTCGT 58.170 40.909 20.43 0.00 46.47 3.85
3233 4303 2.597305 GCAGCAGCTGAAAATCATTTCG 59.403 45.455 27.39 0.00 46.47 3.46
3957 5054 5.651576 CCCCTCGACCTATAACCTATCTAAC 59.348 48.000 0.00 0.00 0.00 2.34
3976 5074 2.100197 GGGAAAATTGTACAGCCCCTC 58.900 52.381 0.00 0.00 0.00 4.30
3977 5075 2.231716 GGGAAAATTGTACAGCCCCT 57.768 50.000 0.00 0.00 0.00 4.79
4047 5149 3.464828 ACTACACCCATCTCCATCCTTT 58.535 45.455 0.00 0.00 0.00 3.11
4178 5285 4.040952 AGACTCCTCTCTTGCAAGCTTAAA 59.959 41.667 21.99 2.95 0.00 1.52
4183 5290 3.817709 ATAGACTCCTCTCTTGCAAGC 57.182 47.619 21.99 4.98 0.00 4.01
4184 5291 5.083533 ACAATAGACTCCTCTCTTGCAAG 57.916 43.478 20.81 20.81 35.12 4.01
4185 5292 4.081420 GGACAATAGACTCCTCTCTTGCAA 60.081 45.833 0.00 0.00 35.12 4.08
4187 5294 3.449018 TGGACAATAGACTCCTCTCTTGC 59.551 47.826 0.00 0.00 35.12 4.01
4188 5295 5.659463 CTTGGACAATAGACTCCTCTCTTG 58.341 45.833 0.00 0.00 36.90 3.02
4190 5297 3.704061 GCTTGGACAATAGACTCCTCTCT 59.296 47.826 0.00 0.00 0.00 3.10
4192 5299 3.718723 AGCTTGGACAATAGACTCCTCT 58.281 45.455 0.00 0.00 0.00 3.69
4193 5300 4.081420 TCAAGCTTGGACAATAGACTCCTC 60.081 45.833 25.73 0.00 0.00 3.71
4194 5301 3.840666 TCAAGCTTGGACAATAGACTCCT 59.159 43.478 25.73 0.00 0.00 3.69
4198 5305 6.913170 TCATTTTCAAGCTTGGACAATAGAC 58.087 36.000 25.73 0.00 0.00 2.59
4199 5306 6.942005 TCTCATTTTCAAGCTTGGACAATAGA 59.058 34.615 25.73 17.83 0.00 1.98
4200 5307 7.094463 ACTCTCATTTTCAAGCTTGGACAATAG 60.094 37.037 25.73 16.06 0.00 1.73
4202 5309 5.537674 ACTCTCATTTTCAAGCTTGGACAAT 59.462 36.000 25.73 17.16 0.00 2.71
4203 5310 4.889409 ACTCTCATTTTCAAGCTTGGACAA 59.111 37.500 25.73 15.77 0.00 3.18
4204 5311 4.464008 ACTCTCATTTTCAAGCTTGGACA 58.536 39.130 25.73 11.65 0.00 4.02
4205 5312 5.218139 CAACTCTCATTTTCAAGCTTGGAC 58.782 41.667 25.73 0.00 0.00 4.02
4206 5313 4.279169 CCAACTCTCATTTTCAAGCTTGGA 59.721 41.667 25.73 15.86 0.00 3.53
4207 5314 4.553323 CCAACTCTCATTTTCAAGCTTGG 58.447 43.478 25.73 9.81 0.00 3.61
4209 5316 3.006217 GGCCAACTCTCATTTTCAAGCTT 59.994 43.478 0.00 0.00 0.00 3.74
4210 5317 2.560105 GGCCAACTCTCATTTTCAAGCT 59.440 45.455 0.00 0.00 0.00 3.74
4212 5319 3.610114 CGTGGCCAACTCTCATTTTCAAG 60.610 47.826 7.24 0.00 0.00 3.02
4213 5320 2.293122 CGTGGCCAACTCTCATTTTCAA 59.707 45.455 7.24 0.00 0.00 2.69
4214 5321 1.879380 CGTGGCCAACTCTCATTTTCA 59.121 47.619 7.24 0.00 0.00 2.69
4215 5322 2.151202 TCGTGGCCAACTCTCATTTTC 58.849 47.619 7.24 0.00 0.00 2.29
4216 5323 2.270352 TCGTGGCCAACTCTCATTTT 57.730 45.000 7.24 0.00 0.00 1.82
4219 5326 1.611673 CCTTTCGTGGCCAACTCTCAT 60.612 52.381 7.24 0.00 0.00 2.90
4222 5329 0.035458 CTCCTTTCGTGGCCAACTCT 59.965 55.000 7.24 0.00 0.00 3.24
4223 5330 0.034896 TCTCCTTTCGTGGCCAACTC 59.965 55.000 7.24 0.00 0.00 3.01
4224 5331 0.250338 GTCTCCTTTCGTGGCCAACT 60.250 55.000 7.24 0.00 0.00 3.16
4226 5333 1.301401 CGTCTCCTTTCGTGGCCAA 60.301 57.895 7.24 0.00 0.00 4.52
4227 5334 2.342279 CGTCTCCTTTCGTGGCCA 59.658 61.111 0.00 0.00 0.00 5.36
4228 5335 3.119096 GCGTCTCCTTTCGTGGCC 61.119 66.667 0.00 0.00 0.00 5.36
4229 5336 3.479269 CGCGTCTCCTTTCGTGGC 61.479 66.667 0.00 0.00 34.57 5.01
4230 5337 2.087009 GTCGCGTCTCCTTTCGTGG 61.087 63.158 5.77 0.00 37.99 4.94
4231 5338 1.371267 TGTCGCGTCTCCTTTCGTG 60.371 57.895 5.77 0.00 38.63 4.35
4232 5339 1.371389 GTGTCGCGTCTCCTTTCGT 60.371 57.895 5.77 0.00 0.00 3.85
4234 5341 0.507358 GTTGTGTCGCGTCTCCTTTC 59.493 55.000 5.77 0.00 0.00 2.62
4236 5343 0.179094 TTGTTGTGTCGCGTCTCCTT 60.179 50.000 5.77 0.00 0.00 3.36
4237 5344 0.179094 TTTGTTGTGTCGCGTCTCCT 60.179 50.000 5.77 0.00 0.00 3.69
4239 5346 0.381428 CGTTTGTTGTGTCGCGTCTC 60.381 55.000 5.77 1.52 0.00 3.36
4241 5348 1.996713 GCGTTTGTTGTGTCGCGTC 60.997 57.895 5.77 0.00 39.35 5.19
4245 5352 2.098215 TGAATGCGTTTGTTGTGTCG 57.902 45.000 0.00 0.00 0.00 4.35
4246 5353 5.116983 CCTATTTGAATGCGTTTGTTGTGTC 59.883 40.000 0.00 0.00 0.00 3.67
4248 5355 5.218885 TCCTATTTGAATGCGTTTGTTGTG 58.781 37.500 0.00 0.00 0.00 3.33
4251 5358 4.764823 TCCTCCTATTTGAATGCGTTTGTT 59.235 37.500 0.00 0.00 0.00 2.83
4252 5359 4.156008 GTCCTCCTATTTGAATGCGTTTGT 59.844 41.667 0.00 0.00 0.00 2.83
4253 5360 4.155826 TGTCCTCCTATTTGAATGCGTTTG 59.844 41.667 0.00 0.00 0.00 2.93
4254 5361 4.331968 TGTCCTCCTATTTGAATGCGTTT 58.668 39.130 0.00 0.00 0.00 3.60
4255 5362 3.950397 TGTCCTCCTATTTGAATGCGTT 58.050 40.909 0.00 0.00 0.00 4.84
4257 5364 6.427853 TCATATTGTCCTCCTATTTGAATGCG 59.572 38.462 0.00 0.00 0.00 4.73
4258 5365 7.094463 CCTCATATTGTCCTCCTATTTGAATGC 60.094 40.741 0.00 0.00 0.00 3.56
4259 5366 7.392673 CCCTCATATTGTCCTCCTATTTGAATG 59.607 40.741 0.00 0.00 0.00 2.67
4260 5367 7.465116 CCCTCATATTGTCCTCCTATTTGAAT 58.535 38.462 0.00 0.00 0.00 2.57
4261 5368 6.691491 GCCCTCATATTGTCCTCCTATTTGAA 60.691 42.308 0.00 0.00 0.00 2.69
4262 5369 5.221925 GCCCTCATATTGTCCTCCTATTTGA 60.222 44.000 0.00 0.00 0.00 2.69
4263 5370 5.006386 GCCCTCATATTGTCCTCCTATTTG 58.994 45.833 0.00 0.00 0.00 2.32
4265 5372 3.589288 GGCCCTCATATTGTCCTCCTATT 59.411 47.826 0.00 0.00 0.00 1.73
4266 5373 3.185455 GGCCCTCATATTGTCCTCCTAT 58.815 50.000 0.00 0.00 0.00 2.57
4267 5374 2.621070 GGCCCTCATATTGTCCTCCTA 58.379 52.381 0.00 0.00 0.00 2.94
4268 5375 1.439543 GGCCCTCATATTGTCCTCCT 58.560 55.000 0.00 0.00 0.00 3.69
4270 5377 0.759346 ACGGCCCTCATATTGTCCTC 59.241 55.000 0.00 0.00 0.00 3.71
4272 5379 2.052782 AAACGGCCCTCATATTGTCC 57.947 50.000 0.00 0.00 0.00 4.02
4296 5420 8.702438 CGTTGCTAGTTTCATTTTCATTTTCAT 58.298 29.630 0.00 0.00 0.00 2.57
4304 5428 6.206498 AGGTTTCGTTGCTAGTTTCATTTTC 58.794 36.000 0.00 0.00 0.00 2.29
4305 5429 6.144078 AGGTTTCGTTGCTAGTTTCATTTT 57.856 33.333 0.00 0.00 0.00 1.82
4307 5431 5.298276 TGAAGGTTTCGTTGCTAGTTTCATT 59.702 36.000 0.00 0.00 0.00 2.57
4311 5435 4.196971 AGTGAAGGTTTCGTTGCTAGTTT 58.803 39.130 0.00 0.00 0.00 2.66
4313 5437 3.470645 AGTGAAGGTTTCGTTGCTAGT 57.529 42.857 0.00 0.00 0.00 2.57
4314 5438 3.807622 TGAAGTGAAGGTTTCGTTGCTAG 59.192 43.478 0.00 0.00 0.00 3.42
4324 5559 5.690865 TGGTTACTTGATGAAGTGAAGGTT 58.309 37.500 7.92 0.00 42.66 3.50
4327 5562 4.999950 AGCTGGTTACTTGATGAAGTGAAG 59.000 41.667 7.92 1.53 42.66 3.02
4329 5564 4.623932 AGCTGGTTACTTGATGAAGTGA 57.376 40.909 7.92 0.00 42.66 3.41
4331 5566 6.770785 TGTAAAAGCTGGTTACTTGATGAAGT 59.229 34.615 17.13 2.35 44.90 3.01
4337 5572 4.764823 CCCATGTAAAAGCTGGTTACTTGA 59.235 41.667 24.07 8.68 38.17 3.02
4338 5573 4.522789 ACCCATGTAAAAGCTGGTTACTTG 59.477 41.667 19.56 19.56 36.82 3.16
4343 5578 1.618343 GCACCCATGTAAAAGCTGGTT 59.382 47.619 0.00 0.00 0.00 3.67
4362 5597 2.627945 TCACGAATGATTGTACAGGGC 58.372 47.619 0.00 0.00 0.00 5.19
4385 5620 9.067986 GCTGTTAAAATAGCAGACCCTAATTAT 57.932 33.333 6.58 0.00 42.02 1.28
4388 5623 6.423182 TGCTGTTAAAATAGCAGACCCTAAT 58.577 36.000 9.73 0.00 46.18 1.73
4390 5625 5.429681 TGCTGTTAAAATAGCAGACCCTA 57.570 39.130 9.73 0.00 46.18 3.53
4403 5638 9.044150 CCTCTGATTCAAAATTTTGCTGTTAAA 57.956 29.630 23.36 13.04 38.05 1.52
4406 5641 6.703165 GTCCTCTGATTCAAAATTTTGCTGTT 59.297 34.615 23.36 9.55 38.05 3.16
4407 5642 6.183360 TGTCCTCTGATTCAAAATTTTGCTGT 60.183 34.615 23.36 12.69 38.05 4.40
4408 5643 6.145048 GTGTCCTCTGATTCAAAATTTTGCTG 59.855 38.462 23.36 14.27 38.05 4.41
4410 5645 5.984926 TGTGTCCTCTGATTCAAAATTTTGC 59.015 36.000 23.36 11.95 38.05 3.68
4412 5649 7.785033 ACTTGTGTCCTCTGATTCAAAATTTT 58.215 30.769 0.00 0.00 0.00 1.82
4416 5653 5.470098 GCTACTTGTGTCCTCTGATTCAAAA 59.530 40.000 0.00 0.00 0.00 2.44
4427 5664 0.108138 GGCATCGCTACTTGTGTCCT 60.108 55.000 0.00 0.00 0.00 3.85
4429 5666 1.090052 GGGGCATCGCTACTTGTGTC 61.090 60.000 0.00 0.00 0.00 3.67
4435 5672 0.538118 TTTTACGGGGCATCGCTACT 59.462 50.000 0.00 0.00 0.00 2.57
4436 5673 0.654160 GTTTTACGGGGCATCGCTAC 59.346 55.000 0.00 0.00 0.00 3.58
4437 5674 0.538118 AGTTTTACGGGGCATCGCTA 59.462 50.000 0.00 0.00 0.00 4.26
4439 5676 0.935196 CTAGTTTTACGGGGCATCGC 59.065 55.000 0.00 0.00 0.00 4.58
4440 5677 1.137479 TCCTAGTTTTACGGGGCATCG 59.863 52.381 0.00 0.00 0.00 3.84
4448 5685 9.983804 GTTGGATTCTTATTTCCTAGTTTTACG 57.016 33.333 0.00 0.00 32.95 3.18
4449 5686 9.983804 CGTTGGATTCTTATTTCCTAGTTTTAC 57.016 33.333 0.00 0.00 32.95 2.01
4450 5687 9.947433 TCGTTGGATTCTTATTTCCTAGTTTTA 57.053 29.630 0.00 0.00 32.95 1.52
4464 5714 3.012518 CCTGCTTCATCGTTGGATTCTT 58.987 45.455 0.00 0.00 0.00 2.52
4466 5716 2.632377 TCCTGCTTCATCGTTGGATTC 58.368 47.619 0.00 0.00 0.00 2.52
4484 5734 5.801380 TCCATCTACCTTTGTGTAACTTCC 58.199 41.667 0.00 0.00 38.04 3.46
4485 5735 7.159372 TCTTCCATCTACCTTTGTGTAACTTC 58.841 38.462 0.00 0.00 38.04 3.01
4486 5736 7.074653 TCTTCCATCTACCTTTGTGTAACTT 57.925 36.000 0.00 0.00 38.04 2.66
4487 5737 6.681729 TCTTCCATCTACCTTTGTGTAACT 57.318 37.500 0.00 0.00 38.04 2.24
4488 5738 6.708949 TGTTCTTCCATCTACCTTTGTGTAAC 59.291 38.462 0.00 0.00 37.35 2.50
4554 5804 8.826765 TCCCTCTGTAAAGAAATTTAGTGATCT 58.173 33.333 0.00 0.00 0.00 2.75
4555 5805 9.103861 CTCCCTCTGTAAAGAAATTTAGTGATC 57.896 37.037 0.00 0.00 0.00 2.92
4556 5806 8.606830 ACTCCCTCTGTAAAGAAATTTAGTGAT 58.393 33.333 0.00 0.00 0.00 3.06
4557 5807 7.974504 ACTCCCTCTGTAAAGAAATTTAGTGA 58.025 34.615 0.00 0.00 0.00 3.41
4558 5808 9.892130 ATACTCCCTCTGTAAAGAAATTTAGTG 57.108 33.333 0.00 0.00 0.00 2.74
4562 5812 9.232473 GTTGATACTCCCTCTGTAAAGAAATTT 57.768 33.333 0.00 0.00 0.00 1.82
4563 5813 8.383175 TGTTGATACTCCCTCTGTAAAGAAATT 58.617 33.333 0.00 0.00 0.00 1.82
4564 5814 7.918076 TGTTGATACTCCCTCTGTAAAGAAAT 58.082 34.615 0.00 0.00 0.00 2.17
4565 5815 7.311092 TGTTGATACTCCCTCTGTAAAGAAA 57.689 36.000 0.00 0.00 0.00 2.52
4566 5816 6.928348 TGTTGATACTCCCTCTGTAAAGAA 57.072 37.500 0.00 0.00 0.00 2.52
4567 5817 6.724441 TCTTGTTGATACTCCCTCTGTAAAGA 59.276 38.462 0.00 0.00 0.00 2.52
4568 5818 6.936279 TCTTGTTGATACTCCCTCTGTAAAG 58.064 40.000 0.00 0.00 0.00 1.85
4569 5819 6.497259 ACTCTTGTTGATACTCCCTCTGTAAA 59.503 38.462 0.00 0.00 0.00 2.01
4570 5820 6.017192 ACTCTTGTTGATACTCCCTCTGTAA 58.983 40.000 0.00 0.00 0.00 2.41
4571 5821 5.419155 CACTCTTGTTGATACTCCCTCTGTA 59.581 44.000 0.00 0.00 0.00 2.74
4572 5822 4.221703 CACTCTTGTTGATACTCCCTCTGT 59.778 45.833 0.00 0.00 0.00 3.41
4573 5823 4.753233 CACTCTTGTTGATACTCCCTCTG 58.247 47.826 0.00 0.00 0.00 3.35
4574 5824 3.196685 GCACTCTTGTTGATACTCCCTCT 59.803 47.826 0.00 0.00 0.00 3.69
4575 5825 3.196685 AGCACTCTTGTTGATACTCCCTC 59.803 47.826 0.00 0.00 0.00 4.30
4576 5826 3.177228 AGCACTCTTGTTGATACTCCCT 58.823 45.455 0.00 0.00 0.00 4.20
4577 5827 3.618690 AGCACTCTTGTTGATACTCCC 57.381 47.619 0.00 0.00 0.00 4.30
4578 5828 6.341316 TCATAAGCACTCTTGTTGATACTCC 58.659 40.000 0.00 0.00 33.85 3.85
4579 5829 8.430801 AATCATAAGCACTCTTGTTGATACTC 57.569 34.615 0.00 0.00 36.41 2.59
4580 5830 8.798859 AAATCATAAGCACTCTTGTTGATACT 57.201 30.769 0.00 0.00 36.41 2.12
4581 5831 8.887717 AGAAATCATAAGCACTCTTGTTGATAC 58.112 33.333 0.00 0.00 36.41 2.24
4585 5835 6.128445 ACGAGAAATCATAAGCACTCTTGTTG 60.128 38.462 0.00 0.00 33.85 3.33
4593 5843 2.939103 AGCCACGAGAAATCATAAGCAC 59.061 45.455 0.00 0.00 0.00 4.40
4598 5848 7.272244 TCTTTGATTAGCCACGAGAAATCATA 58.728 34.615 0.00 0.00 37.96 2.15
4600 5850 5.487433 TCTTTGATTAGCCACGAGAAATCA 58.513 37.500 0.00 0.00 36.75 2.57
4626 5876 0.465705 TGCAAGGGATCTGGATCGTC 59.534 55.000 4.75 0.88 38.69 4.20
4669 5919 6.292703 CCTCACGAGACTCACGTTTTTATTTT 60.293 38.462 2.82 0.00 42.07 1.82
4680 5930 2.795175 TTTGACCTCACGAGACTCAC 57.205 50.000 2.82 0.00 0.00 3.51
4852 6102 6.362686 TGTTTCGCGATCATTTTGCTATATC 58.637 36.000 10.88 0.00 31.94 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.