Multiple sequence alignment - TraesCS6A01G312200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G312200 chr6A 100.000 2782 0 0 1 2782 548421875 548419094 0.000000e+00 5138.0
1 TraesCS6A01G312200 chr6A 100.000 210 0 0 3094 3303 548418782 548418573 4.000000e-104 388.0
2 TraesCS6A01G312200 chr6D 91.795 1231 65 22 1504 2727 402136010 402134809 0.000000e+00 1681.0
3 TraesCS6A01G312200 chr6D 91.570 1210 60 17 1 1196 402137437 402136256 0.000000e+00 1631.0
4 TraesCS6A01G312200 chr6B 94.866 935 35 9 1613 2543 602961864 602960939 0.000000e+00 1448.0
5 TraesCS6A01G312200 chr6B 91.516 554 36 7 647 1196 602962716 602962170 0.000000e+00 752.0
6 TraesCS6A01G312200 chr6B 89.631 569 49 7 1 564 602963427 602962864 0.000000e+00 715.0
7 TraesCS6A01G312200 chr6B 90.426 188 11 5 2548 2730 602960897 602960712 1.180000e-59 241.0
8 TraesCS6A01G312200 chr6B 87.379 206 22 4 1088 1293 502997653 502997452 1.980000e-57 233.0
9 TraesCS6A01G312200 chr6B 92.793 111 8 0 548 658 602962848 602962738 9.490000e-36 161.0
10 TraesCS6A01G312200 chrUn 81.250 96 13 5 2405 2498 89793432 89793340 4.570000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G312200 chr6A 548418573 548421875 3302 True 2763.0 5138 100.0000 1 3303 2 chr6A.!!$R1 3302
1 TraesCS6A01G312200 chr6D 402134809 402137437 2628 True 1656.0 1681 91.6825 1 2727 2 chr6D.!!$R1 2726
2 TraesCS6A01G312200 chr6B 602960712 602963427 2715 True 663.4 1448 91.8464 1 2730 5 chr6B.!!$R2 2729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 757 0.388649 GGCTGTACACTGAGGACACG 60.389 60.0 0.0 0.0 0.00 4.49 F
1366 1456 0.188342 ATGTGGGCTGGTCCTTTGTT 59.812 50.0 0.0 0.0 34.39 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 1602 0.104304 CGACCATAGCTTTACCGGCT 59.896 55.0 0.00 0.0 43.02 5.52 R
3142 3299 0.033894 GGGGAAGGGCCATACGAAAA 60.034 55.0 6.18 0.0 38.95 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.637977 TGCCCAAACAACTTTTTCAAATCC 59.362 37.500 0.00 0.00 0.00 3.01
123 124 9.396022 GGAAATGGATATTGTTCAACTAAGAGA 57.604 33.333 0.00 0.00 0.00 3.10
125 126 8.425577 AATGGATATTGTTCAACTAAGAGACG 57.574 34.615 0.00 0.00 0.00 4.18
126 127 5.810587 TGGATATTGTTCAACTAAGAGACGC 59.189 40.000 0.00 0.00 0.00 5.19
172 173 7.581213 TTCTATTGACAGGTTTGTGAACATT 57.419 32.000 0.00 0.00 37.76 2.71
173 174 7.202016 TCTATTGACAGGTTTGTGAACATTC 57.798 36.000 0.00 0.00 37.76 2.67
262 263 5.737184 GTGCGACCCACTAACAAGCATTG 62.737 52.174 0.00 0.00 46.04 2.82
358 359 6.506500 AAAAATGACCATGTGTTGCAAAAA 57.493 29.167 0.00 0.00 0.00 1.94
638 684 0.538584 TGCACTCCTCGAATGCAGAT 59.461 50.000 8.71 0.00 44.17 2.90
668 747 4.131596 CTCTCTACTAGAGGGCTGTACAC 58.868 52.174 12.37 0.00 46.98 2.90
678 757 0.388649 GGCTGTACACTGAGGACACG 60.389 60.000 0.00 0.00 0.00 4.49
695 774 4.184629 GACACGGCTGACTAATGAGAATT 58.815 43.478 0.00 0.00 0.00 2.17
772 851 6.709397 CACTCCTAGTACATACGAATAGGACA 59.291 42.308 0.00 0.00 37.65 4.02
781 860 7.553881 ACATACGAATAGGACAATTTTCAGG 57.446 36.000 0.00 0.00 0.00 3.86
877 958 2.552591 GCAAGGATGAGGCTATGAGCAT 60.553 50.000 0.21 0.00 44.75 3.79
902 983 5.191323 CCATCAGCCATAGAAATCCTATCCT 59.809 44.000 0.00 0.00 35.96 3.24
903 984 5.752036 TCAGCCATAGAAATCCTATCCTG 57.248 43.478 0.00 0.00 35.96 3.86
904 985 4.019860 TCAGCCATAGAAATCCTATCCTGC 60.020 45.833 0.00 0.00 35.96 4.85
906 987 3.265479 GCCATAGAAATCCTATCCTGCCT 59.735 47.826 0.00 0.00 35.96 4.75
920 1002 3.046374 TCCTGCCTACCCCTCTTATTTC 58.954 50.000 0.00 0.00 0.00 2.17
921 1003 2.106684 CCTGCCTACCCCTCTTATTTCC 59.893 54.545 0.00 0.00 0.00 3.13
922 1004 3.049344 CTGCCTACCCCTCTTATTTCCT 58.951 50.000 0.00 0.00 0.00 3.36
1181 1264 4.141287 CGATCTCCAGATACTTCTCCACT 58.859 47.826 0.00 0.00 34.37 4.00
1203 1286 5.309323 TGGTACAGTTTTGCTATTCATGC 57.691 39.130 0.00 0.00 0.00 4.06
1204 1287 5.009631 TGGTACAGTTTTGCTATTCATGCT 58.990 37.500 0.00 0.00 0.00 3.79
1205 1288 6.176896 TGGTACAGTTTTGCTATTCATGCTA 58.823 36.000 0.00 0.00 0.00 3.49
1206 1289 6.657117 TGGTACAGTTTTGCTATTCATGCTAA 59.343 34.615 0.00 0.00 0.00 3.09
1207 1290 6.967199 GGTACAGTTTTGCTATTCATGCTAAC 59.033 38.462 0.00 0.00 0.00 2.34
1208 1291 6.824305 ACAGTTTTGCTATTCATGCTAACT 57.176 33.333 0.00 0.00 36.89 2.24
1209 1292 6.615088 ACAGTTTTGCTATTCATGCTAACTG 58.385 36.000 20.78 20.78 46.32 3.16
1210 1293 6.430925 ACAGTTTTGCTATTCATGCTAACTGA 59.569 34.615 25.08 0.00 45.28 3.41
1211 1294 7.040478 ACAGTTTTGCTATTCATGCTAACTGAA 60.040 33.333 25.08 0.00 45.28 3.02
1212 1295 7.484007 CAGTTTTGCTATTCATGCTAACTGAAG 59.516 37.037 19.21 3.84 45.28 3.02
1213 1296 7.175641 AGTTTTGCTATTCATGCTAACTGAAGT 59.824 33.333 0.00 0.00 36.16 3.01
1214 1297 7.452880 TTTGCTATTCATGCTAACTGAAGTT 57.547 32.000 0.71 0.71 41.73 2.66
1215 1298 6.426980 TGCTATTCATGCTAACTGAAGTTG 57.573 37.500 5.95 0.00 38.90 3.16
1216 1299 5.939883 TGCTATTCATGCTAACTGAAGTTGT 59.060 36.000 5.95 0.00 38.90 3.32
1217 1300 6.092670 TGCTATTCATGCTAACTGAAGTTGTC 59.907 38.462 5.95 0.00 38.90 3.18
1218 1301 6.314896 GCTATTCATGCTAACTGAAGTTGTCT 59.685 38.462 5.95 0.00 38.90 3.41
1219 1302 6.734104 ATTCATGCTAACTGAAGTTGTCTC 57.266 37.500 5.95 0.00 38.90 3.36
1220 1303 5.213891 TCATGCTAACTGAAGTTGTCTCA 57.786 39.130 5.95 0.00 38.90 3.27
1221 1304 5.610398 TCATGCTAACTGAAGTTGTCTCAA 58.390 37.500 5.95 0.00 38.90 3.02
1222 1305 5.698089 TCATGCTAACTGAAGTTGTCTCAAG 59.302 40.000 5.95 0.00 38.90 3.02
1223 1306 5.023533 TGCTAACTGAAGTTGTCTCAAGT 57.976 39.130 5.95 0.00 38.90 3.16
1224 1307 6.156748 TGCTAACTGAAGTTGTCTCAAGTA 57.843 37.500 5.95 0.00 38.90 2.24
1225 1308 6.216569 TGCTAACTGAAGTTGTCTCAAGTAG 58.783 40.000 5.95 0.00 38.90 2.57
1226 1309 5.635700 GCTAACTGAAGTTGTCTCAAGTAGG 59.364 44.000 5.95 0.00 38.90 3.18
1227 1310 5.871396 AACTGAAGTTGTCTCAAGTAGGA 57.129 39.130 0.00 0.00 36.80 2.94
1231 1314 5.470368 TGAAGTTGTCTCAAGTAGGATTCG 58.530 41.667 0.00 0.00 0.00 3.34
1236 1319 3.190874 GTCTCAAGTAGGATTCGGCAAG 58.809 50.000 0.00 0.00 0.00 4.01
1247 1330 2.859165 TTCGGCAAGATGTTTCTCCT 57.141 45.000 0.00 0.00 0.00 3.69
1286 1370 4.557296 GCATGTAGTGTGCAATGTTCTTGT 60.557 41.667 0.00 0.00 42.08 3.16
1287 1371 4.550577 TGTAGTGTGCAATGTTCTTGTG 57.449 40.909 0.00 0.00 0.00 3.33
1288 1372 2.497107 AGTGTGCAATGTTCTTGTGC 57.503 45.000 0.00 0.00 38.78 4.57
1289 1373 1.750206 AGTGTGCAATGTTCTTGTGCA 59.250 42.857 0.00 0.00 45.62 4.57
1294 1378 4.325028 TGCAATGTTCTTGTGCATTCTT 57.675 36.364 0.00 0.00 43.09 2.52
1319 1403 1.269257 GGCCAACTCTTTGCACTCAAC 60.269 52.381 0.00 0.00 30.75 3.18
1330 1414 2.098614 TGCACTCAACACATTGTGGTT 58.901 42.857 20.33 9.65 37.94 3.67
1331 1415 2.495270 TGCACTCAACACATTGTGGTTT 59.505 40.909 20.33 4.43 37.94 3.27
1363 1453 1.992557 TCTTATGTGGGCTGGTCCTTT 59.007 47.619 0.00 0.00 34.39 3.11
1364 1454 2.094675 CTTATGTGGGCTGGTCCTTTG 58.905 52.381 0.00 0.00 34.39 2.77
1366 1456 0.188342 ATGTGGGCTGGTCCTTTGTT 59.812 50.000 0.00 0.00 34.39 2.83
1367 1457 0.754957 TGTGGGCTGGTCCTTTGTTG 60.755 55.000 0.00 0.00 34.39 3.33
1371 1476 2.158385 TGGGCTGGTCCTTTGTTGTTAT 60.158 45.455 0.00 0.00 34.39 1.89
1374 1479 2.161609 GCTGGTCCTTTGTTGTTATCCG 59.838 50.000 0.00 0.00 0.00 4.18
1387 1492 5.595133 TGTTGTTATCCGAAAAAGGAAAGGT 59.405 36.000 0.00 0.00 44.50 3.50
1389 1494 4.521256 TGTTATCCGAAAAAGGAAAGGTGG 59.479 41.667 0.00 0.00 44.50 4.61
1421 1528 7.380423 TCTTCAATTAGAATAGAAGGAGGGG 57.620 40.000 0.00 0.00 38.35 4.79
1426 1533 7.849904 TCAATTAGAATAGAAGGAGGGGTACTT 59.150 37.037 0.00 0.00 0.00 2.24
1427 1534 7.859026 ATTAGAATAGAAGGAGGGGTACTTC 57.141 40.000 0.00 0.00 0.00 3.01
1435 1542 4.529716 AGGAGGGGTACTTCTTCTAGAG 57.470 50.000 0.00 0.00 27.05 2.43
1449 1556 7.621683 ACTTCTTCTAGAGATGGGAATAGTTGT 59.378 37.037 0.00 0.00 34.66 3.32
1455 1562 4.225942 AGAGATGGGAATAGTTGTTCTGCA 59.774 41.667 0.00 0.00 0.00 4.41
1456 1563 4.922206 AGATGGGAATAGTTGTTCTGCAA 58.078 39.130 0.00 0.00 34.16 4.08
1457 1564 4.946157 AGATGGGAATAGTTGTTCTGCAAG 59.054 41.667 0.00 0.00 37.83 4.01
1458 1565 2.819608 TGGGAATAGTTGTTCTGCAAGC 59.180 45.455 0.00 0.00 37.83 4.01
1459 1566 2.819608 GGGAATAGTTGTTCTGCAAGCA 59.180 45.455 0.00 0.00 37.83 3.91
1460 1567 3.255642 GGGAATAGTTGTTCTGCAAGCAA 59.744 43.478 0.00 0.00 37.83 3.91
1461 1568 4.261994 GGGAATAGTTGTTCTGCAAGCAAA 60.262 41.667 0.00 0.00 37.83 3.68
1462 1569 5.288804 GGAATAGTTGTTCTGCAAGCAAAA 58.711 37.500 0.00 0.00 37.83 2.44
1463 1570 5.928264 GGAATAGTTGTTCTGCAAGCAAAAT 59.072 36.000 0.00 0.00 37.83 1.82
1464 1571 7.090173 GGAATAGTTGTTCTGCAAGCAAAATA 58.910 34.615 0.00 0.00 37.83 1.40
1465 1572 7.274250 GGAATAGTTGTTCTGCAAGCAAAATAG 59.726 37.037 0.00 0.00 37.83 1.73
1466 1573 5.520376 AGTTGTTCTGCAAGCAAAATAGT 57.480 34.783 0.00 0.00 37.83 2.12
1467 1574 5.906073 AGTTGTTCTGCAAGCAAAATAGTT 58.094 33.333 0.00 0.00 37.83 2.24
1468 1575 6.340522 AGTTGTTCTGCAAGCAAAATAGTTT 58.659 32.000 0.00 0.00 37.83 2.66
1469 1576 6.476706 AGTTGTTCTGCAAGCAAAATAGTTTC 59.523 34.615 0.00 0.00 37.83 2.78
1470 1577 5.900425 TGTTCTGCAAGCAAAATAGTTTCA 58.100 33.333 0.00 0.00 0.00 2.69
1471 1578 5.978919 TGTTCTGCAAGCAAAATAGTTTCAG 59.021 36.000 0.00 0.00 0.00 3.02
1472 1579 4.549458 TCTGCAAGCAAAATAGTTTCAGC 58.451 39.130 0.00 0.00 0.00 4.26
1473 1580 4.279169 TCTGCAAGCAAAATAGTTTCAGCT 59.721 37.500 0.00 0.00 36.06 4.24
1474 1581 4.947645 TGCAAGCAAAATAGTTTCAGCTT 58.052 34.783 7.24 7.24 41.52 3.74
1475 1582 4.984161 TGCAAGCAAAATAGTTTCAGCTTC 59.016 37.500 9.47 6.69 39.98 3.86
1476 1583 4.984161 GCAAGCAAAATAGTTTCAGCTTCA 59.016 37.500 9.47 0.00 39.98 3.02
1477 1584 5.118203 GCAAGCAAAATAGTTTCAGCTTCAG 59.882 40.000 9.47 3.21 39.98 3.02
1478 1585 4.802999 AGCAAAATAGTTTCAGCTTCAGC 58.197 39.130 0.00 0.00 42.49 4.26
1479 1586 4.279169 AGCAAAATAGTTTCAGCTTCAGCA 59.721 37.500 0.75 0.00 45.16 4.41
1480 1587 4.620184 GCAAAATAGTTTCAGCTTCAGCAG 59.380 41.667 0.75 0.00 45.16 4.24
1490 1597 2.536725 CTTCAGCAGCACACGATGT 58.463 52.632 0.00 0.00 0.00 3.06
1498 1605 3.171987 CACACGATGTGCAGAGCC 58.828 61.111 0.00 0.00 41.89 4.70
1499 1606 2.433145 ACACGATGTGCAGAGCCG 60.433 61.111 6.84 6.84 36.98 5.52
1500 1607 3.190849 CACGATGTGCAGAGCCGG 61.191 66.667 11.90 0.00 0.00 6.13
1501 1608 3.695606 ACGATGTGCAGAGCCGGT 61.696 61.111 1.90 0.00 0.00 5.28
1502 1609 2.348104 ACGATGTGCAGAGCCGGTA 61.348 57.895 1.90 0.00 0.00 4.02
1525 1632 3.009723 AGCTATGGTCGTGTTTGAATGG 58.990 45.455 0.00 0.00 0.00 3.16
1530 1637 1.135402 GGTCGTGTTTGAATGGATGGC 60.135 52.381 0.00 0.00 0.00 4.40
1543 1650 1.073125 TGGATGGCTTTTCTCCGTTGA 59.927 47.619 0.00 0.00 31.36 3.18
1545 1652 2.098117 GGATGGCTTTTCTCCGTTGATG 59.902 50.000 0.00 0.00 0.00 3.07
1594 1701 6.218746 ACTGGCAGTTTCTTCAATGAAAATC 58.781 36.000 15.88 0.00 37.63 2.17
1768 1875 0.036388 CAACGGCACTCCCTACATGT 60.036 55.000 2.69 2.69 0.00 3.21
1801 1908 6.149973 CCATATGTCAATCCTGCGTCAATAAT 59.850 38.462 1.24 0.00 0.00 1.28
1805 1912 7.189693 TGTCAATCCTGCGTCAATAATAATC 57.810 36.000 0.00 0.00 0.00 1.75
1807 1914 4.928661 ATCCTGCGTCAATAATAATCGC 57.071 40.909 0.00 0.00 45.70 4.58
2023 2130 1.370657 CTCGCCTCCGTCGATTAGC 60.371 63.158 0.00 0.00 35.25 3.09
2028 2135 1.538204 GCCTCCGTCGATTAGCAATCA 60.538 52.381 0.00 0.00 37.78 2.57
2029 2136 2.821546 CCTCCGTCGATTAGCAATCAA 58.178 47.619 0.00 0.00 37.78 2.57
2030 2137 3.393800 CCTCCGTCGATTAGCAATCAAT 58.606 45.455 0.00 0.00 37.78 2.57
2045 2152 2.519377 TCAATCTTTCACGTCCGTGT 57.481 45.000 18.23 0.00 45.55 4.49
2048 2155 1.992170 ATCTTTCACGTCCGTGTAGC 58.008 50.000 18.23 0.00 45.55 3.58
2233 2343 0.528017 CACTAGTGCTCCTTGCTCGA 59.472 55.000 10.54 0.00 43.37 4.04
2239 2349 1.789464 GTGCTCCTTGCTCGATTATCG 59.211 52.381 8.47 8.47 43.37 2.92
2324 2434 1.726791 CGTTCAGTTCATCGGTTCCAG 59.273 52.381 0.00 0.00 0.00 3.86
2338 2448 3.181504 CGGTTCCAGTTTTCTTTTGTCGT 60.182 43.478 0.00 0.00 0.00 4.34
2392 2502 2.171003 TCAGTGACCGTGACATCAGAT 58.829 47.619 0.00 0.00 0.00 2.90
2454 2566 5.188434 ACAGACATTATCATCCACCAACAG 58.812 41.667 0.00 0.00 0.00 3.16
2463 2577 4.457466 TCATCCACCAACAGATCATCATG 58.543 43.478 0.00 0.00 0.00 3.07
2501 2616 6.987403 TGGTTTATCTAAGTTTGCCCTTTT 57.013 33.333 0.00 0.00 0.00 2.27
2530 2645 0.886563 AGAGCTTGTGCCAAGATTGC 59.113 50.000 16.28 4.55 40.80 3.56
2539 2656 2.979813 GTGCCAAGATTGCTGTTTTACG 59.020 45.455 0.00 0.00 0.00 3.18
2630 2785 5.922053 TGACAATCATTGGAGATGTCCTAG 58.078 41.667 10.72 0.20 44.30 3.02
2710 2865 7.062322 TGGATGTGTAGATTAATTTGAGCCAT 58.938 34.615 0.00 0.00 0.00 4.40
2730 2887 8.000780 AGCCATTTAATAACAAAGGTCTCATC 57.999 34.615 0.00 0.00 0.00 2.92
2731 2888 6.912591 GCCATTTAATAACAAAGGTCTCATCG 59.087 38.462 0.00 0.00 0.00 3.84
2732 2889 7.417612 CCATTTAATAACAAAGGTCTCATCGG 58.582 38.462 0.00 0.00 0.00 4.18
2733 2890 6.995511 TTTAATAACAAAGGTCTCATCGGG 57.004 37.500 0.00 0.00 0.00 5.14
2734 2891 2.396590 TAACAAAGGTCTCATCGGGC 57.603 50.000 0.00 0.00 0.00 6.13
2735 2892 0.400213 AACAAAGGTCTCATCGGGCA 59.600 50.000 0.00 0.00 0.00 5.36
2736 2893 0.036010 ACAAAGGTCTCATCGGGCAG 60.036 55.000 0.00 0.00 0.00 4.85
2737 2894 0.250234 CAAAGGTCTCATCGGGCAGA 59.750 55.000 0.00 0.00 0.00 4.26
2738 2895 1.134280 CAAAGGTCTCATCGGGCAGAT 60.134 52.381 0.00 0.00 41.01 2.90
2745 2902 2.512286 ATCGGGCAGATGCGTGTG 60.512 61.111 0.00 0.00 43.26 3.82
2746 2903 4.758251 TCGGGCAGATGCGTGTGG 62.758 66.667 5.08 0.00 43.26 4.17
2756 2913 4.357947 GCGTGTGGCAGAGACGGA 62.358 66.667 13.55 0.00 41.57 4.69
2757 2914 2.573869 CGTGTGGCAGAGACGGAT 59.426 61.111 5.88 0.00 37.69 4.18
2758 2915 1.807226 CGTGTGGCAGAGACGGATA 59.193 57.895 5.88 0.00 37.69 2.59
2759 2916 0.172578 CGTGTGGCAGAGACGGATAA 59.827 55.000 5.88 0.00 37.69 1.75
2760 2917 1.799181 CGTGTGGCAGAGACGGATAAG 60.799 57.143 5.88 0.00 37.69 1.73
2761 2918 0.175760 TGTGGCAGAGACGGATAAGC 59.824 55.000 0.00 0.00 0.00 3.09
2762 2919 0.461961 GTGGCAGAGACGGATAAGCT 59.538 55.000 0.00 0.00 0.00 3.74
2763 2920 0.461548 TGGCAGAGACGGATAAGCTG 59.538 55.000 0.00 0.00 0.00 4.24
2764 2921 0.747255 GGCAGAGACGGATAAGCTGA 59.253 55.000 0.00 0.00 0.00 4.26
2765 2922 1.342819 GGCAGAGACGGATAAGCTGAT 59.657 52.381 0.00 0.00 0.00 2.90
2766 2923 2.224161 GGCAGAGACGGATAAGCTGATT 60.224 50.000 0.00 0.00 0.00 2.57
2767 2924 3.462021 GCAGAGACGGATAAGCTGATTT 58.538 45.455 0.00 0.00 0.00 2.17
2768 2925 3.873952 GCAGAGACGGATAAGCTGATTTT 59.126 43.478 0.00 0.00 0.00 1.82
2769 2926 4.025313 GCAGAGACGGATAAGCTGATTTTC 60.025 45.833 0.00 0.00 0.00 2.29
2770 2927 5.355596 CAGAGACGGATAAGCTGATTTTCT 58.644 41.667 0.00 0.00 0.00 2.52
2771 2928 5.461737 CAGAGACGGATAAGCTGATTTTCTC 59.538 44.000 8.53 8.53 0.00 2.87
2772 2929 5.362430 AGAGACGGATAAGCTGATTTTCTCT 59.638 40.000 11.68 11.68 33.95 3.10
2773 2930 5.983540 AGACGGATAAGCTGATTTTCTCTT 58.016 37.500 0.00 0.00 0.00 2.85
2774 2931 6.410540 AGACGGATAAGCTGATTTTCTCTTT 58.589 36.000 0.00 0.00 0.00 2.52
2775 2932 6.881602 AGACGGATAAGCTGATTTTCTCTTTT 59.118 34.615 0.00 0.00 0.00 2.27
2776 2933 7.065204 AGACGGATAAGCTGATTTTCTCTTTTC 59.935 37.037 0.00 0.00 0.00 2.29
2777 2934 6.881602 ACGGATAAGCTGATTTTCTCTTTTCT 59.118 34.615 0.00 0.00 0.00 2.52
2778 2935 7.148340 ACGGATAAGCTGATTTTCTCTTTTCTG 60.148 37.037 0.00 0.00 32.71 3.02
2779 2936 7.479150 GGATAAGCTGATTTTCTCTTTTCTGG 58.521 38.462 0.00 0.00 0.00 3.86
2780 2937 7.337942 GGATAAGCTGATTTTCTCTTTTCTGGA 59.662 37.037 0.00 0.00 0.00 3.86
2781 2938 6.966534 AAGCTGATTTTCTCTTTTCTGGAA 57.033 33.333 0.00 0.00 0.00 3.53
3110 3267 3.081133 GGCACGCGTATGTGACTG 58.919 61.111 13.44 0.00 44.75 3.51
3111 3268 2.452813 GGCACGCGTATGTGACTGG 61.453 63.158 13.44 0.00 44.75 4.00
3112 3269 1.736645 GCACGCGTATGTGACTGGT 60.737 57.895 13.44 0.00 42.55 4.00
3113 3270 1.289109 GCACGCGTATGTGACTGGTT 61.289 55.000 13.44 0.00 42.55 3.67
3114 3271 0.713883 CACGCGTATGTGACTGGTTC 59.286 55.000 13.44 0.00 42.55 3.62
3115 3272 0.731514 ACGCGTATGTGACTGGTTCG 60.732 55.000 11.67 0.00 0.00 3.95
3116 3273 0.455464 CGCGTATGTGACTGGTTCGA 60.455 55.000 0.00 0.00 0.00 3.71
3117 3274 1.705256 GCGTATGTGACTGGTTCGAA 58.295 50.000 0.00 0.00 0.00 3.71
3118 3275 1.389106 GCGTATGTGACTGGTTCGAAC 59.611 52.381 20.14 20.14 0.00 3.95
3119 3276 2.668250 CGTATGTGACTGGTTCGAACA 58.332 47.619 28.24 14.13 0.00 3.18
3120 3277 3.054166 CGTATGTGACTGGTTCGAACAA 58.946 45.455 28.24 17.90 0.00 2.83
3121 3278 3.121279 CGTATGTGACTGGTTCGAACAAG 59.879 47.826 27.59 27.59 36.01 3.16
3122 3279 2.971660 TGTGACTGGTTCGAACAAGA 57.028 45.000 34.13 14.11 34.01 3.02
3123 3280 3.469008 TGTGACTGGTTCGAACAAGAT 57.531 42.857 34.13 20.27 34.01 2.40
3124 3281 3.130633 TGTGACTGGTTCGAACAAGATG 58.869 45.455 34.13 18.18 34.01 2.90
3125 3282 3.131396 GTGACTGGTTCGAACAAGATGT 58.869 45.455 34.13 20.80 34.01 3.06
3126 3283 3.184581 GTGACTGGTTCGAACAAGATGTC 59.815 47.826 34.13 26.12 34.01 3.06
3127 3284 3.181470 TGACTGGTTCGAACAAGATGTCA 60.181 43.478 34.13 27.83 34.01 3.58
3128 3285 3.997021 GACTGGTTCGAACAAGATGTCAT 59.003 43.478 34.13 14.44 34.01 3.06
3129 3286 5.147330 ACTGGTTCGAACAAGATGTCATA 57.853 39.130 34.13 5.95 34.01 2.15
3130 3287 5.734720 ACTGGTTCGAACAAGATGTCATAT 58.265 37.500 34.13 10.58 34.01 1.78
3131 3288 5.582269 ACTGGTTCGAACAAGATGTCATATG 59.418 40.000 34.13 9.35 34.01 1.78
3132 3289 4.332543 TGGTTCGAACAAGATGTCATATGC 59.667 41.667 28.24 7.45 0.00 3.14
3133 3290 4.260784 GGTTCGAACAAGATGTCATATGCC 60.261 45.833 28.24 2.68 0.00 4.40
3134 3291 4.406648 TCGAACAAGATGTCATATGCCT 57.593 40.909 0.00 0.00 0.00 4.75
3135 3292 4.371786 TCGAACAAGATGTCATATGCCTC 58.628 43.478 0.00 0.00 0.00 4.70
3136 3293 3.496130 CGAACAAGATGTCATATGCCTCC 59.504 47.826 0.00 0.00 0.00 4.30
3137 3294 3.498774 ACAAGATGTCATATGCCTCCC 57.501 47.619 0.00 0.00 0.00 4.30
3138 3295 2.107204 ACAAGATGTCATATGCCTCCCC 59.893 50.000 0.00 0.00 0.00 4.81
3139 3296 1.366319 AGATGTCATATGCCTCCCCC 58.634 55.000 0.00 0.00 0.00 5.40
3140 3297 0.036010 GATGTCATATGCCTCCCCCG 60.036 60.000 0.00 0.00 0.00 5.73
3141 3298 0.768221 ATGTCATATGCCTCCCCCGT 60.768 55.000 0.00 0.00 0.00 5.28
3142 3299 0.986019 TGTCATATGCCTCCCCCGTT 60.986 55.000 0.00 0.00 0.00 4.44
3143 3300 0.182775 GTCATATGCCTCCCCCGTTT 59.817 55.000 0.00 0.00 0.00 3.60
3144 3301 0.923358 TCATATGCCTCCCCCGTTTT 59.077 50.000 0.00 0.00 0.00 2.43
3145 3302 1.286553 TCATATGCCTCCCCCGTTTTT 59.713 47.619 0.00 0.00 0.00 1.94
3146 3303 1.681264 CATATGCCTCCCCCGTTTTTC 59.319 52.381 0.00 0.00 0.00 2.29
3147 3304 0.393267 TATGCCTCCCCCGTTTTTCG 60.393 55.000 0.00 0.00 39.52 3.46
3148 3305 2.281970 GCCTCCCCCGTTTTTCGT 60.282 61.111 0.00 0.00 37.94 3.85
3149 3306 1.003476 GCCTCCCCCGTTTTTCGTA 60.003 57.895 0.00 0.00 37.94 3.43
3150 3307 0.393402 GCCTCCCCCGTTTTTCGTAT 60.393 55.000 0.00 0.00 37.94 3.06
3151 3308 1.375551 CCTCCCCCGTTTTTCGTATG 58.624 55.000 0.00 0.00 37.94 2.39
3152 3309 1.375551 CTCCCCCGTTTTTCGTATGG 58.624 55.000 0.00 0.00 37.94 2.74
3153 3310 0.677414 TCCCCCGTTTTTCGTATGGC 60.677 55.000 0.00 0.00 37.94 4.40
3154 3311 1.659622 CCCCCGTTTTTCGTATGGCC 61.660 60.000 0.00 0.00 37.94 5.36
3155 3312 1.659622 CCCCGTTTTTCGTATGGCCC 61.660 60.000 0.00 0.00 37.94 5.80
3156 3313 0.678684 CCCGTTTTTCGTATGGCCCT 60.679 55.000 0.00 0.00 37.94 5.19
3157 3314 1.170442 CCGTTTTTCGTATGGCCCTT 58.830 50.000 0.00 0.00 37.94 3.95
3158 3315 1.131693 CCGTTTTTCGTATGGCCCTTC 59.868 52.381 0.00 0.00 37.94 3.46
3159 3316 1.131693 CGTTTTTCGTATGGCCCTTCC 59.868 52.381 0.00 0.00 34.52 3.46
3160 3317 1.475280 GTTTTTCGTATGGCCCTTCCC 59.525 52.381 0.00 0.00 0.00 3.97
3161 3318 0.033894 TTTTCGTATGGCCCTTCCCC 60.034 55.000 0.00 0.00 0.00 4.81
3162 3319 1.928714 TTTCGTATGGCCCTTCCCCC 61.929 60.000 0.00 0.00 0.00 5.40
3163 3320 4.250305 CGTATGGCCCTTCCCCCG 62.250 72.222 0.00 0.00 0.00 5.73
3164 3321 4.581093 GTATGGCCCTTCCCCCGC 62.581 72.222 0.00 0.00 0.00 6.13
3169 3326 4.696805 GCCCTTCCCCCGCCTTTT 62.697 66.667 0.00 0.00 0.00 2.27
3170 3327 2.362503 CCCTTCCCCCGCCTTTTC 60.363 66.667 0.00 0.00 0.00 2.29
3171 3328 2.763902 CCTTCCCCCGCCTTTTCT 59.236 61.111 0.00 0.00 0.00 2.52
3172 3329 1.568118 CCCTTCCCCCGCCTTTTCTA 61.568 60.000 0.00 0.00 0.00 2.10
3173 3330 0.393944 CCTTCCCCCGCCTTTTCTAC 60.394 60.000 0.00 0.00 0.00 2.59
3174 3331 0.393944 CTTCCCCCGCCTTTTCTACC 60.394 60.000 0.00 0.00 0.00 3.18
3175 3332 1.855441 TTCCCCCGCCTTTTCTACCC 61.855 60.000 0.00 0.00 0.00 3.69
3176 3333 2.608550 CCCCCGCCTTTTCTACCCA 61.609 63.158 0.00 0.00 0.00 4.51
3177 3334 1.381076 CCCCGCCTTTTCTACCCAA 59.619 57.895 0.00 0.00 0.00 4.12
3178 3335 0.679960 CCCCGCCTTTTCTACCCAAG 60.680 60.000 0.00 0.00 0.00 3.61
3179 3336 0.037734 CCCGCCTTTTCTACCCAAGT 59.962 55.000 0.00 0.00 0.00 3.16
3180 3337 1.546998 CCCGCCTTTTCTACCCAAGTT 60.547 52.381 0.00 0.00 0.00 2.66
3181 3338 1.539827 CCGCCTTTTCTACCCAAGTTG 59.460 52.381 0.00 0.00 0.00 3.16
3182 3339 1.539827 CGCCTTTTCTACCCAAGTTGG 59.460 52.381 15.52 15.52 37.25 3.77
3183 3340 1.272490 GCCTTTTCTACCCAAGTTGGC 59.728 52.381 17.07 0.00 35.79 4.52
3184 3341 1.539827 CCTTTTCTACCCAAGTTGGCG 59.460 52.381 17.07 12.09 35.79 5.69
3185 3342 2.227194 CTTTTCTACCCAAGTTGGCGT 58.773 47.619 17.07 17.00 35.79 5.68
3186 3343 1.886886 TTTCTACCCAAGTTGGCGTC 58.113 50.000 17.07 0.00 35.79 5.19
3187 3344 0.320073 TTCTACCCAAGTTGGCGTCG 60.320 55.000 17.07 11.59 35.79 5.12
3188 3345 1.740296 CTACCCAAGTTGGCGTCGG 60.740 63.158 17.07 4.97 35.79 4.79
3189 3346 2.444700 CTACCCAAGTTGGCGTCGGT 62.445 60.000 17.07 10.84 35.79 4.69
3190 3347 1.184322 TACCCAAGTTGGCGTCGGTA 61.184 55.000 17.07 9.83 35.79 4.02
3191 3348 1.740296 CCCAAGTTGGCGTCGGTAG 60.740 63.158 17.07 0.00 35.79 3.18
3192 3349 1.290955 CCAAGTTGGCGTCGGTAGA 59.709 57.895 9.46 0.00 0.00 2.59
3193 3350 0.108329 CCAAGTTGGCGTCGGTAGAT 60.108 55.000 9.46 0.00 0.00 1.98
3194 3351 1.674817 CCAAGTTGGCGTCGGTAGATT 60.675 52.381 9.46 0.00 0.00 2.40
3195 3352 2.073816 CAAGTTGGCGTCGGTAGATTT 58.926 47.619 0.00 0.00 0.00 2.17
3196 3353 3.255725 CAAGTTGGCGTCGGTAGATTTA 58.744 45.455 0.00 0.00 0.00 1.40
3197 3354 3.598019 AGTTGGCGTCGGTAGATTTAA 57.402 42.857 0.00 0.00 0.00 1.52
3198 3355 3.929094 AGTTGGCGTCGGTAGATTTAAA 58.071 40.909 0.00 0.00 0.00 1.52
3199 3356 4.510571 AGTTGGCGTCGGTAGATTTAAAT 58.489 39.130 0.00 0.00 0.00 1.40
3200 3357 5.663456 AGTTGGCGTCGGTAGATTTAAATA 58.337 37.500 0.00 0.00 0.00 1.40
3201 3358 5.521372 AGTTGGCGTCGGTAGATTTAAATAC 59.479 40.000 0.00 0.00 0.00 1.89
3202 3359 5.008619 TGGCGTCGGTAGATTTAAATACA 57.991 39.130 0.00 0.00 0.00 2.29
3203 3360 5.603596 TGGCGTCGGTAGATTTAAATACAT 58.396 37.500 0.00 0.00 0.00 2.29
3204 3361 5.693104 TGGCGTCGGTAGATTTAAATACATC 59.307 40.000 0.00 0.00 0.00 3.06
3205 3362 5.164119 GGCGTCGGTAGATTTAAATACATCG 60.164 44.000 0.00 4.43 0.00 3.84
3206 3363 5.400485 GCGTCGGTAGATTTAAATACATCGT 59.600 40.000 0.00 0.00 0.00 3.73
3207 3364 6.612913 GCGTCGGTAGATTTAAATACATCGTG 60.613 42.308 0.00 3.57 0.00 4.35
3208 3365 6.129273 CGTCGGTAGATTTAAATACATCGTGG 60.129 42.308 0.00 0.00 0.00 4.94
3209 3366 6.698766 GTCGGTAGATTTAAATACATCGTGGT 59.301 38.462 0.00 0.00 0.00 4.16
3210 3367 6.698329 TCGGTAGATTTAAATACATCGTGGTG 59.302 38.462 0.00 0.00 0.00 4.17
3211 3368 6.073980 CGGTAGATTTAAATACATCGTGGTGG 60.074 42.308 0.00 0.00 0.00 4.61
3212 3369 6.764560 GGTAGATTTAAATACATCGTGGTGGT 59.235 38.462 0.00 0.00 0.00 4.16
3213 3370 7.281549 GGTAGATTTAAATACATCGTGGTGGTT 59.718 37.037 0.00 0.00 0.00 3.67
3214 3371 9.316730 GTAGATTTAAATACATCGTGGTGGTTA 57.683 33.333 0.00 0.00 0.00 2.85
3215 3372 8.433421 AGATTTAAATACATCGTGGTGGTTAG 57.567 34.615 0.00 0.00 0.00 2.34
3216 3373 8.044908 AGATTTAAATACATCGTGGTGGTTAGT 58.955 33.333 0.00 0.00 0.00 2.24
3217 3374 7.982761 TTTAAATACATCGTGGTGGTTAGTT 57.017 32.000 0.00 0.00 0.00 2.24
3218 3375 7.982761 TTAAATACATCGTGGTGGTTAGTTT 57.017 32.000 0.00 0.00 0.00 2.66
3219 3376 5.873179 AATACATCGTGGTGGTTAGTTTG 57.127 39.130 0.00 0.00 0.00 2.93
3220 3377 2.500229 ACATCGTGGTGGTTAGTTTGG 58.500 47.619 0.00 0.00 0.00 3.28
3221 3378 1.810151 CATCGTGGTGGTTAGTTTGGG 59.190 52.381 0.00 0.00 0.00 4.12
3222 3379 0.838608 TCGTGGTGGTTAGTTTGGGT 59.161 50.000 0.00 0.00 0.00 4.51
3223 3380 0.948678 CGTGGTGGTTAGTTTGGGTG 59.051 55.000 0.00 0.00 0.00 4.61
3224 3381 0.671796 GTGGTGGTTAGTTTGGGTGC 59.328 55.000 0.00 0.00 0.00 5.01
3225 3382 0.259065 TGGTGGTTAGTTTGGGTGCA 59.741 50.000 0.00 0.00 0.00 4.57
3226 3383 1.342076 TGGTGGTTAGTTTGGGTGCAA 60.342 47.619 0.00 0.00 0.00 4.08
3227 3384 1.339929 GGTGGTTAGTTTGGGTGCAAG 59.660 52.381 0.00 0.00 0.00 4.01
3228 3385 2.303175 GTGGTTAGTTTGGGTGCAAGA 58.697 47.619 0.00 0.00 0.00 3.02
3229 3386 2.293399 GTGGTTAGTTTGGGTGCAAGAG 59.707 50.000 0.00 0.00 0.00 2.85
3230 3387 2.173782 TGGTTAGTTTGGGTGCAAGAGA 59.826 45.455 0.00 0.00 0.00 3.10
3231 3388 2.552743 GGTTAGTTTGGGTGCAAGAGAC 59.447 50.000 0.00 0.00 0.00 3.36
3232 3389 3.211045 GTTAGTTTGGGTGCAAGAGACA 58.789 45.455 0.00 0.00 0.00 3.41
3233 3390 2.664402 AGTTTGGGTGCAAGAGACAT 57.336 45.000 0.00 0.00 0.00 3.06
3234 3391 3.788227 AGTTTGGGTGCAAGAGACATA 57.212 42.857 0.00 0.00 0.00 2.29
3235 3392 4.307032 AGTTTGGGTGCAAGAGACATAT 57.693 40.909 0.00 0.00 0.00 1.78
3236 3393 4.012374 AGTTTGGGTGCAAGAGACATATG 58.988 43.478 0.00 0.00 0.00 1.78
3237 3394 3.719268 TTGGGTGCAAGAGACATATGT 57.281 42.857 8.43 8.43 0.00 2.29
3238 3395 3.266510 TGGGTGCAAGAGACATATGTC 57.733 47.619 25.47 25.47 45.08 3.06
3239 3396 2.092968 TGGGTGCAAGAGACATATGTCC 60.093 50.000 28.26 20.23 45.85 4.02
3240 3397 2.565841 GGTGCAAGAGACATATGTCCC 58.434 52.381 28.26 19.49 45.85 4.46
3241 3398 2.171448 GGTGCAAGAGACATATGTCCCT 59.829 50.000 28.26 21.41 45.85 4.20
3242 3399 3.388024 GGTGCAAGAGACATATGTCCCTA 59.612 47.826 28.26 8.08 45.85 3.53
3243 3400 4.040952 GGTGCAAGAGACATATGTCCCTAT 59.959 45.833 28.26 12.97 45.85 2.57
3244 3401 5.246203 GGTGCAAGAGACATATGTCCCTATA 59.754 44.000 28.26 11.83 45.85 1.31
3245 3402 6.159988 GTGCAAGAGACATATGTCCCTATAC 58.840 44.000 28.26 18.17 45.85 1.47
3246 3403 6.015010 GTGCAAGAGACATATGTCCCTATACT 60.015 42.308 28.26 16.21 45.85 2.12
3247 3404 6.209589 TGCAAGAGACATATGTCCCTATACTC 59.790 42.308 28.26 18.36 45.85 2.59
3248 3405 6.623986 GCAAGAGACATATGTCCCTATACTCG 60.624 46.154 28.26 11.49 45.85 4.18
3249 3406 6.375830 AGAGACATATGTCCCTATACTCGA 57.624 41.667 28.26 0.00 45.85 4.04
3250 3407 6.964464 AGAGACATATGTCCCTATACTCGAT 58.036 40.000 28.26 8.64 45.85 3.59
3251 3408 7.406916 AGAGACATATGTCCCTATACTCGATT 58.593 38.462 28.26 8.45 45.85 3.34
3252 3409 8.549731 AGAGACATATGTCCCTATACTCGATTA 58.450 37.037 28.26 0.00 45.85 1.75
3253 3410 8.508883 AGACATATGTCCCTATACTCGATTAC 57.491 38.462 28.26 2.11 45.85 1.89
3254 3411 8.330247 AGACATATGTCCCTATACTCGATTACT 58.670 37.037 28.26 4.60 45.85 2.24
3255 3412 8.508883 ACATATGTCCCTATACTCGATTACTC 57.491 38.462 1.41 0.00 0.00 2.59
3256 3413 7.280428 ACATATGTCCCTATACTCGATTACTCG 59.720 40.741 1.41 0.00 46.41 4.18
3274 3431 9.781834 GATTACTCGATCCTACAAATATCAGAG 57.218 37.037 0.00 0.00 32.04 3.35
3275 3432 8.919777 TTACTCGATCCTACAAATATCAGAGA 57.080 34.615 0.00 0.00 31.17 3.10
3276 3433 7.209471 ACTCGATCCTACAAATATCAGAGAC 57.791 40.000 0.00 0.00 31.17 3.36
3277 3434 6.207810 ACTCGATCCTACAAATATCAGAGACC 59.792 42.308 0.00 0.00 31.17 3.85
3278 3435 6.068670 TCGATCCTACAAATATCAGAGACCA 58.931 40.000 0.00 0.00 0.00 4.02
3279 3436 6.549736 TCGATCCTACAAATATCAGAGACCAA 59.450 38.462 0.00 0.00 0.00 3.67
3280 3437 7.069455 TCGATCCTACAAATATCAGAGACCAAA 59.931 37.037 0.00 0.00 0.00 3.28
3281 3438 7.383572 CGATCCTACAAATATCAGAGACCAAAG 59.616 40.741 0.00 0.00 0.00 2.77
3282 3439 6.889198 TCCTACAAATATCAGAGACCAAAGG 58.111 40.000 0.00 0.00 0.00 3.11
3283 3440 6.443849 TCCTACAAATATCAGAGACCAAAGGT 59.556 38.462 0.00 0.00 39.44 3.50
3284 3441 7.037586 TCCTACAAATATCAGAGACCAAAGGTT 60.038 37.037 0.00 0.00 35.25 3.50
3285 3442 8.265055 CCTACAAATATCAGAGACCAAAGGTTA 58.735 37.037 0.00 0.00 35.25 2.85
3286 3443 9.319143 CTACAAATATCAGAGACCAAAGGTTAG 57.681 37.037 0.00 0.00 35.25 2.34
3287 3444 7.112779 ACAAATATCAGAGACCAAAGGTTAGG 58.887 38.462 0.00 0.00 35.25 2.69
3288 3445 5.896073 ATATCAGAGACCAAAGGTTAGGG 57.104 43.478 0.00 0.00 35.25 3.53
3289 3446 3.269592 TCAGAGACCAAAGGTTAGGGA 57.730 47.619 0.00 0.00 35.25 4.20
3290 3447 3.173965 TCAGAGACCAAAGGTTAGGGAG 58.826 50.000 0.00 0.00 35.25 4.30
3291 3448 2.907042 CAGAGACCAAAGGTTAGGGAGT 59.093 50.000 0.00 0.00 35.25 3.85
3292 3449 3.055747 CAGAGACCAAAGGTTAGGGAGTC 60.056 52.174 0.00 0.00 35.25 3.36
3293 3450 2.236644 GAGACCAAAGGTTAGGGAGTCC 59.763 54.545 0.00 0.00 35.25 3.85
3294 3451 1.982958 GACCAAAGGTTAGGGAGTCCA 59.017 52.381 12.30 0.00 35.25 4.02
3295 3452 1.703513 ACCAAAGGTTAGGGAGTCCAC 59.296 52.381 12.30 0.00 29.78 4.02
3296 3453 1.702957 CCAAAGGTTAGGGAGTCCACA 59.297 52.381 12.30 0.00 34.83 4.17
3297 3454 2.107552 CCAAAGGTTAGGGAGTCCACAA 59.892 50.000 12.30 0.63 34.83 3.33
3298 3455 3.146847 CAAAGGTTAGGGAGTCCACAAC 58.853 50.000 12.30 13.35 34.83 3.32
3299 3456 1.359168 AGGTTAGGGAGTCCACAACC 58.641 55.000 26.08 26.08 44.36 3.77
3300 3457 1.132495 AGGTTAGGGAGTCCACAACCT 60.132 52.381 28.67 28.67 46.83 3.50
3301 3458 1.703513 GGTTAGGGAGTCCACAACCTT 59.296 52.381 26.10 3.06 42.47 3.50
3302 3459 2.908351 GGTTAGGGAGTCCACAACCTTA 59.092 50.000 26.10 2.78 42.47 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 6.819649 ACCCATAAAATGTTTCATGCATCAAG 59.180 34.615 0.00 0.00 0.00 3.02
104 105 7.527084 AAGCGTCTCTTAGTTGAACAATATC 57.473 36.000 0.00 0.00 32.10 1.63
119 120 1.726791 CGTGCAACATAAAGCGTCTCT 59.273 47.619 0.00 0.00 35.74 3.10
123 124 4.671880 TTTATCGTGCAACATAAAGCGT 57.328 36.364 7.08 0.00 35.74 5.07
125 126 9.450807 AGAAATATTTATCGTGCAACATAAAGC 57.549 29.630 13.84 0.00 35.17 3.51
420 424 8.286800 CCATTTGTCTCATACAGAAAACGTTTA 58.713 33.333 15.03 0.00 39.87 2.01
424 429 6.241207 ACCATTTGTCTCATACAGAAAACG 57.759 37.500 0.00 0.00 39.87 3.60
434 441 4.562082 CAACATGCAACCATTTGTCTCAT 58.438 39.130 0.00 0.00 34.90 2.90
435 442 3.799574 GCAACATGCAACCATTTGTCTCA 60.800 43.478 0.00 0.00 44.26 3.27
436 443 2.733026 GCAACATGCAACCATTTGTCTC 59.267 45.455 0.00 0.00 44.26 3.36
561 575 8.443160 TCTTCAAAACATGAACATCTATTCGAC 58.557 33.333 0.00 0.00 43.08 4.20
661 740 0.388649 GCCGTGTCCTCAGTGTACAG 60.389 60.000 0.00 0.00 0.00 2.74
668 747 0.888619 TTAGTCAGCCGTGTCCTCAG 59.111 55.000 0.00 0.00 0.00 3.35
678 757 3.067320 GGGCAAATTCTCATTAGTCAGCC 59.933 47.826 0.00 0.00 37.69 4.85
806 887 2.749076 TCAGCTTGGTCCAAATTCGATG 59.251 45.455 5.64 3.22 0.00 3.84
877 958 5.190528 GGATAGGATTTCTATGGCTGATGGA 59.809 44.000 0.00 0.00 38.71 3.41
902 983 3.046374 GAGGAAATAAGAGGGGTAGGCA 58.954 50.000 0.00 0.00 0.00 4.75
903 984 2.372504 GGAGGAAATAAGAGGGGTAGGC 59.627 54.545 0.00 0.00 0.00 3.93
904 985 2.980379 GGGAGGAAATAAGAGGGGTAGG 59.020 54.545 0.00 0.00 0.00 3.18
906 987 2.362159 GGGGGAGGAAATAAGAGGGGTA 60.362 54.545 0.00 0.00 0.00 3.69
920 1002 2.069430 GCTCAGGAAGAGGGGGAGG 61.069 68.421 0.00 0.00 44.86 4.30
921 1003 2.069430 GGCTCAGGAAGAGGGGGAG 61.069 68.421 0.00 0.00 44.86 4.30
922 1004 2.041265 GGCTCAGGAAGAGGGGGA 59.959 66.667 0.00 0.00 44.86 4.81
1013 1095 3.431572 GTGAATGTGTGTTCTCTGCTCTC 59.568 47.826 0.00 0.00 0.00 3.20
1014 1096 3.070734 AGTGAATGTGTGTTCTCTGCTCT 59.929 43.478 0.00 0.00 32.46 4.09
1015 1097 3.397482 AGTGAATGTGTGTTCTCTGCTC 58.603 45.455 0.00 0.00 32.46 4.26
1016 1098 3.482156 AGTGAATGTGTGTTCTCTGCT 57.518 42.857 0.00 0.00 32.46 4.24
1018 1100 5.490139 ACAAAGTGAATGTGTGTTCTCTG 57.510 39.130 0.00 0.00 33.59 3.35
1019 1101 5.677091 GCAACAAAGTGAATGTGTGTTCTCT 60.677 40.000 0.00 0.00 34.43 3.10
1020 1102 4.500477 GCAACAAAGTGAATGTGTGTTCTC 59.500 41.667 0.00 0.00 30.20 2.87
1094 1177 2.772691 GGCATTGGCAGCTGAGCTC 61.773 63.158 20.43 6.82 43.71 4.09
1181 1264 5.009631 AGCATGAATAGCAAAACTGTACCA 58.990 37.500 0.00 0.00 0.00 3.25
1188 1271 7.308435 ACTTCAGTTAGCATGAATAGCAAAAC 58.692 34.615 0.00 0.00 36.16 2.43
1189 1272 7.452880 ACTTCAGTTAGCATGAATAGCAAAA 57.547 32.000 0.00 0.00 36.16 2.44
1195 1278 7.386059 TGAGACAACTTCAGTTAGCATGAATA 58.614 34.615 0.00 0.00 36.16 1.75
1196 1279 6.233434 TGAGACAACTTCAGTTAGCATGAAT 58.767 36.000 0.00 0.00 36.16 2.57
1197 1280 5.610398 TGAGACAACTTCAGTTAGCATGAA 58.390 37.500 0.00 0.00 36.32 2.57
1198 1281 5.213891 TGAGACAACTTCAGTTAGCATGA 57.786 39.130 0.00 0.00 36.32 3.07
1199 1282 5.468072 ACTTGAGACAACTTCAGTTAGCATG 59.532 40.000 0.00 0.00 36.32 4.06
1200 1283 5.615289 ACTTGAGACAACTTCAGTTAGCAT 58.385 37.500 0.00 0.00 36.32 3.79
1201 1284 5.023533 ACTTGAGACAACTTCAGTTAGCA 57.976 39.130 0.00 0.00 36.32 3.49
1202 1285 5.635700 CCTACTTGAGACAACTTCAGTTAGC 59.364 44.000 0.00 0.00 36.32 3.09
1203 1286 6.982852 TCCTACTTGAGACAACTTCAGTTAG 58.017 40.000 0.00 0.00 36.32 2.34
1204 1287 6.971726 TCCTACTTGAGACAACTTCAGTTA 57.028 37.500 0.00 0.00 36.32 2.24
1205 1288 5.871396 TCCTACTTGAGACAACTTCAGTT 57.129 39.130 0.00 0.00 39.12 3.16
1206 1289 6.426646 AATCCTACTTGAGACAACTTCAGT 57.573 37.500 0.00 0.00 0.00 3.41
1207 1290 5.574830 CGAATCCTACTTGAGACAACTTCAG 59.425 44.000 0.00 0.00 0.00 3.02
1208 1291 5.470368 CGAATCCTACTTGAGACAACTTCA 58.530 41.667 0.00 0.00 0.00 3.02
1209 1292 4.865365 CCGAATCCTACTTGAGACAACTTC 59.135 45.833 0.00 0.00 0.00 3.01
1210 1293 4.822026 CCGAATCCTACTTGAGACAACTT 58.178 43.478 0.00 0.00 0.00 2.66
1211 1294 3.368531 GCCGAATCCTACTTGAGACAACT 60.369 47.826 0.00 0.00 0.00 3.16
1212 1295 2.930682 GCCGAATCCTACTTGAGACAAC 59.069 50.000 0.00 0.00 0.00 3.32
1213 1296 2.565391 TGCCGAATCCTACTTGAGACAA 59.435 45.455 0.00 0.00 0.00 3.18
1214 1297 2.176045 TGCCGAATCCTACTTGAGACA 58.824 47.619 0.00 0.00 0.00 3.41
1215 1298 2.961526 TGCCGAATCCTACTTGAGAC 57.038 50.000 0.00 0.00 0.00 3.36
1216 1299 3.096852 TCTTGCCGAATCCTACTTGAGA 58.903 45.455 0.00 0.00 0.00 3.27
1217 1300 3.526931 TCTTGCCGAATCCTACTTGAG 57.473 47.619 0.00 0.00 0.00 3.02
1218 1301 3.197766 ACATCTTGCCGAATCCTACTTGA 59.802 43.478 0.00 0.00 0.00 3.02
1219 1302 3.535561 ACATCTTGCCGAATCCTACTTG 58.464 45.455 0.00 0.00 0.00 3.16
1220 1303 3.914426 ACATCTTGCCGAATCCTACTT 57.086 42.857 0.00 0.00 0.00 2.24
1221 1304 3.914426 AACATCTTGCCGAATCCTACT 57.086 42.857 0.00 0.00 0.00 2.57
1222 1305 4.192317 AGAAACATCTTGCCGAATCCTAC 58.808 43.478 0.00 0.00 0.00 3.18
1223 1306 4.442706 GAGAAACATCTTGCCGAATCCTA 58.557 43.478 0.00 0.00 0.00 2.94
1224 1307 3.274288 GAGAAACATCTTGCCGAATCCT 58.726 45.455 0.00 0.00 0.00 3.24
1225 1308 2.356069 GGAGAAACATCTTGCCGAATCC 59.644 50.000 0.00 0.00 0.00 3.01
1226 1309 3.274288 AGGAGAAACATCTTGCCGAATC 58.726 45.455 0.00 0.00 0.00 2.52
1227 1310 3.356529 AGGAGAAACATCTTGCCGAAT 57.643 42.857 0.00 0.00 0.00 3.34
1263 1346 3.837213 AGAACATTGCACACTACATGC 57.163 42.857 0.00 0.00 43.68 4.06
1288 1372 1.891150 AGAGTTGGCCTGCAAAGAATG 59.109 47.619 3.32 0.00 0.00 2.67
1289 1373 2.299326 AGAGTTGGCCTGCAAAGAAT 57.701 45.000 3.32 0.00 0.00 2.40
1290 1374 2.071778 AAGAGTTGGCCTGCAAAGAA 57.928 45.000 3.32 0.00 0.00 2.52
1292 1376 1.870993 GCAAAGAGTTGGCCTGCAAAG 60.871 52.381 3.32 0.00 35.10 2.77
1293 1377 0.104671 GCAAAGAGTTGGCCTGCAAA 59.895 50.000 3.32 0.00 35.10 3.68
1294 1378 1.042003 TGCAAAGAGTTGGCCTGCAA 61.042 50.000 10.83 0.00 39.91 4.08
1299 1383 1.032014 TTGAGTGCAAAGAGTTGGCC 58.968 50.000 0.00 0.00 35.10 5.36
1300 1384 1.405105 TGTTGAGTGCAAAGAGTTGGC 59.595 47.619 0.00 0.00 35.42 4.52
1331 1415 6.601613 CAGCCCACATAAGATACAGGTAAAAA 59.398 38.462 0.00 0.00 0.00 1.94
1344 1428 2.094675 CAAAGGACCAGCCCACATAAG 58.905 52.381 0.00 0.00 37.37 1.73
1363 1453 5.595133 ACCTTTCCTTTTTCGGATAACAACA 59.405 36.000 0.00 0.00 32.02 3.33
1364 1454 5.918576 CACCTTTCCTTTTTCGGATAACAAC 59.081 40.000 0.00 0.00 32.02 3.32
1366 1456 4.521256 CCACCTTTCCTTTTTCGGATAACA 59.479 41.667 0.00 0.00 32.02 2.41
1367 1457 4.763279 TCCACCTTTCCTTTTTCGGATAAC 59.237 41.667 0.00 0.00 32.02 1.89
1371 1476 3.300239 TTCCACCTTTCCTTTTTCGGA 57.700 42.857 0.00 0.00 0.00 4.55
1403 1510 7.606581 AGAAGTACCCCTCCTTCTATTCTAAT 58.393 38.462 0.29 0.00 44.18 1.73
1412 1519 4.869451 TCTAGAAGAAGTACCCCTCCTTC 58.131 47.826 0.00 0.00 37.85 3.46
1413 1520 4.544968 TCTCTAGAAGAAGTACCCCTCCTT 59.455 45.833 0.00 0.00 0.00 3.36
1414 1521 4.120681 TCTCTAGAAGAAGTACCCCTCCT 58.879 47.826 0.00 0.00 0.00 3.69
1421 1528 8.700439 ACTATTCCCATCTCTAGAAGAAGTAC 57.300 38.462 0.00 0.00 37.61 2.73
1426 1533 7.841729 AGAACAACTATTCCCATCTCTAGAAGA 59.158 37.037 0.00 0.00 38.72 2.87
1427 1534 7.925483 CAGAACAACTATTCCCATCTCTAGAAG 59.075 40.741 0.00 0.00 0.00 2.85
1430 1537 5.988561 GCAGAACAACTATTCCCATCTCTAG 59.011 44.000 0.00 0.00 0.00 2.43
1431 1538 5.425217 TGCAGAACAACTATTCCCATCTCTA 59.575 40.000 0.00 0.00 0.00 2.43
1435 1542 4.439289 GCTTGCAGAACAACTATTCCCATC 60.439 45.833 0.00 0.00 33.68 3.51
1449 1556 4.984161 GCTGAAACTATTTTGCTTGCAGAA 59.016 37.500 1.17 1.17 0.00 3.02
1455 1562 5.221303 TGCTGAAGCTGAAACTATTTTGCTT 60.221 36.000 3.61 12.21 41.69 3.91
1456 1563 4.279169 TGCTGAAGCTGAAACTATTTTGCT 59.721 37.500 3.61 0.00 42.66 3.91
1457 1564 4.549458 TGCTGAAGCTGAAACTATTTTGC 58.451 39.130 3.61 0.00 42.66 3.68
1472 1579 0.165295 CACATCGTGTGCTGCTGAAG 59.835 55.000 0.00 0.00 41.89 3.02
1473 1580 2.237416 CACATCGTGTGCTGCTGAA 58.763 52.632 0.00 0.00 41.89 3.02
1474 1581 3.955775 CACATCGTGTGCTGCTGA 58.044 55.556 0.00 0.00 41.89 4.26
1482 1589 2.433145 CGGCTCTGCACATCGTGT 60.433 61.111 0.00 0.00 35.75 4.49
1483 1590 2.557059 TACCGGCTCTGCACATCGTG 62.557 60.000 0.00 0.00 36.51 4.35
1484 1591 1.884075 TTACCGGCTCTGCACATCGT 61.884 55.000 0.00 0.00 0.00 3.73
1485 1592 0.739462 TTTACCGGCTCTGCACATCG 60.739 55.000 0.00 0.00 0.00 3.84
1486 1593 1.009829 CTTTACCGGCTCTGCACATC 58.990 55.000 0.00 0.00 0.00 3.06
1487 1594 1.026718 GCTTTACCGGCTCTGCACAT 61.027 55.000 0.00 0.00 0.00 3.21
1488 1595 1.671054 GCTTTACCGGCTCTGCACA 60.671 57.895 0.00 0.00 0.00 4.57
1489 1596 0.108329 TAGCTTTACCGGCTCTGCAC 60.108 55.000 0.00 0.00 40.74 4.57
1490 1597 0.830648 ATAGCTTTACCGGCTCTGCA 59.169 50.000 0.00 0.00 40.74 4.41
1491 1598 1.221414 CATAGCTTTACCGGCTCTGC 58.779 55.000 0.00 0.88 40.74 4.26
1492 1599 1.139058 ACCATAGCTTTACCGGCTCTG 59.861 52.381 0.00 0.00 40.74 3.35
1493 1600 1.413077 GACCATAGCTTTACCGGCTCT 59.587 52.381 0.00 0.00 40.74 4.09
1494 1601 1.867166 GACCATAGCTTTACCGGCTC 58.133 55.000 0.00 0.00 40.74 4.70
1495 1602 0.104304 CGACCATAGCTTTACCGGCT 59.896 55.000 0.00 0.00 43.02 5.52
1496 1603 0.179092 ACGACCATAGCTTTACCGGC 60.179 55.000 0.00 0.00 0.00 6.13
1497 1604 1.134907 ACACGACCATAGCTTTACCGG 60.135 52.381 0.00 0.00 0.00 5.28
1498 1605 2.288961 ACACGACCATAGCTTTACCG 57.711 50.000 0.00 0.00 0.00 4.02
1499 1606 3.998341 TCAAACACGACCATAGCTTTACC 59.002 43.478 0.00 0.00 0.00 2.85
1500 1607 5.600908 TTCAAACACGACCATAGCTTTAC 57.399 39.130 0.00 0.00 0.00 2.01
1501 1608 5.123186 CCATTCAAACACGACCATAGCTTTA 59.877 40.000 0.00 0.00 0.00 1.85
1502 1609 4.082787 CCATTCAAACACGACCATAGCTTT 60.083 41.667 0.00 0.00 0.00 3.51
1525 1632 2.749621 ACATCAACGGAGAAAAGCCATC 59.250 45.455 0.00 0.00 0.00 3.51
1530 1637 3.124297 GCTCAGACATCAACGGAGAAAAG 59.876 47.826 0.00 0.00 32.90 2.27
1569 1676 5.596836 TTTCATTGAAGAAACTGCCAGTT 57.403 34.783 3.74 3.74 40.80 3.16
1628 1735 5.049167 GCAAACTCACATCAAAACCATTCA 58.951 37.500 0.00 0.00 0.00 2.57
1768 1875 5.474532 GCAGGATTGACATATGGAAAGCATA 59.525 40.000 7.80 0.00 0.00 3.14
1807 1914 3.711059 GAGATGGCCCTGCACCCAG 62.711 68.421 0.00 0.00 38.85 4.45
1987 2094 0.462937 AGGTGTTTGCTGTGCGTACA 60.463 50.000 6.10 6.10 35.08 2.90
2045 2152 5.109210 CAACACAGTTCATTAGGATCGCTA 58.891 41.667 0.00 0.00 0.00 4.26
2048 2155 5.621422 CAACAACACAGTTCATTAGGATCG 58.379 41.667 0.00 0.00 0.00 3.69
2086 2195 0.809241 GCTCGAGTTGATCTGCCAGG 60.809 60.000 15.13 0.00 0.00 4.45
2324 2434 5.051973 GCCATGTACAACGACAAAAGAAAAC 60.052 40.000 0.00 0.00 31.83 2.43
2338 2448 0.673333 CTGCTGGACGCCATGTACAA 60.673 55.000 0.00 0.00 42.18 2.41
2432 2544 5.430886 TCTGTTGGTGGATGATAATGTCTG 58.569 41.667 0.00 0.00 0.00 3.51
2501 2616 3.181438 TGGCACAAGCTCTAAGGGTAAAA 60.181 43.478 0.00 0.00 41.70 1.52
2505 2620 2.463441 TGGCACAAGCTCTAAGGGT 58.537 52.632 0.00 0.00 41.70 4.34
2530 2645 8.411683 AGAGGAGGTAATATGTACGTAAAACAG 58.588 37.037 0.00 0.00 0.00 3.16
2539 2656 4.831710 ACGGGAAGAGGAGGTAATATGTAC 59.168 45.833 0.00 0.00 0.00 2.90
2600 2755 9.211485 GACATCTCCAATGATTGTCAAATTTTT 57.789 29.630 4.27 0.00 31.36 1.94
2605 2760 5.573219 AGGACATCTCCAATGATTGTCAAA 58.427 37.500 4.27 0.00 39.39 2.69
2700 2855 8.815912 AGACCTTTGTTATTAAATGGCTCAAAT 58.184 29.630 0.00 0.00 0.00 2.32
2710 2865 5.355910 GCCCGATGAGACCTTTGTTATTAAA 59.644 40.000 0.00 0.00 0.00 1.52
2720 2877 2.922162 ATCTGCCCGATGAGACCTT 58.078 52.632 0.00 0.00 0.00 3.50
2739 2896 2.279502 TATCCGTCTCTGCCACACGC 62.280 60.000 0.00 0.00 38.31 5.34
2740 2897 0.172578 TTATCCGTCTCTGCCACACG 59.827 55.000 0.00 0.00 0.00 4.49
2741 2898 1.927895 CTTATCCGTCTCTGCCACAC 58.072 55.000 0.00 0.00 0.00 3.82
2742 2899 0.175760 GCTTATCCGTCTCTGCCACA 59.824 55.000 0.00 0.00 0.00 4.17
2743 2900 0.461961 AGCTTATCCGTCTCTGCCAC 59.538 55.000 0.00 0.00 0.00 5.01
2744 2901 0.461548 CAGCTTATCCGTCTCTGCCA 59.538 55.000 0.00 0.00 0.00 4.92
2745 2902 0.747255 TCAGCTTATCCGTCTCTGCC 59.253 55.000 0.00 0.00 0.00 4.85
2746 2903 2.810439 ATCAGCTTATCCGTCTCTGC 57.190 50.000 0.00 0.00 0.00 4.26
2747 2904 5.355596 AGAAAATCAGCTTATCCGTCTCTG 58.644 41.667 0.00 0.00 0.00 3.35
2748 2905 5.362430 AGAGAAAATCAGCTTATCCGTCTCT 59.638 40.000 10.16 10.16 35.62 3.10
2749 2906 5.596845 AGAGAAAATCAGCTTATCCGTCTC 58.403 41.667 7.08 7.08 0.00 3.36
2750 2907 5.606348 AGAGAAAATCAGCTTATCCGTCT 57.394 39.130 0.00 0.00 0.00 4.18
2751 2908 6.670077 AAAGAGAAAATCAGCTTATCCGTC 57.330 37.500 0.00 0.00 0.00 4.79
2752 2909 6.881602 AGAAAAGAGAAAATCAGCTTATCCGT 59.118 34.615 0.00 0.00 0.00 4.69
2753 2910 7.185453 CAGAAAAGAGAAAATCAGCTTATCCG 58.815 38.462 0.00 0.00 0.00 4.18
2754 2911 7.337942 TCCAGAAAAGAGAAAATCAGCTTATCC 59.662 37.037 0.00 0.00 0.00 2.59
2755 2912 8.273780 TCCAGAAAAGAGAAAATCAGCTTATC 57.726 34.615 0.00 0.00 0.00 1.75
2756 2913 8.641498 TTCCAGAAAAGAGAAAATCAGCTTAT 57.359 30.769 0.00 0.00 0.00 1.73
2758 2915 6.966534 TTCCAGAAAAGAGAAAATCAGCTT 57.033 33.333 0.00 0.00 0.00 3.74
3093 3250 2.452813 CCAGTCACATACGCGTGCC 61.453 63.158 24.59 2.73 36.80 5.01
3094 3251 1.289109 AACCAGTCACATACGCGTGC 61.289 55.000 24.59 4.88 36.80 5.34
3095 3252 0.713883 GAACCAGTCACATACGCGTG 59.286 55.000 24.59 8.88 38.29 5.34
3096 3253 0.731514 CGAACCAGTCACATACGCGT 60.732 55.000 19.17 19.17 0.00 6.01
3097 3254 0.455464 TCGAACCAGTCACATACGCG 60.455 55.000 3.53 3.53 0.00 6.01
3098 3255 1.389106 GTTCGAACCAGTCACATACGC 59.611 52.381 17.68 0.00 0.00 4.42
3099 3256 2.668250 TGTTCGAACCAGTCACATACG 58.332 47.619 24.78 0.00 0.00 3.06
3100 3257 4.304110 TCTTGTTCGAACCAGTCACATAC 58.696 43.478 24.78 0.00 0.00 2.39
3101 3258 4.594123 TCTTGTTCGAACCAGTCACATA 57.406 40.909 24.78 4.15 0.00 2.29
3102 3259 3.469008 TCTTGTTCGAACCAGTCACAT 57.531 42.857 24.78 0.00 0.00 3.21
3103 3260 2.971660 TCTTGTTCGAACCAGTCACA 57.028 45.000 24.78 5.21 0.00 3.58
3104 3261 3.131396 ACATCTTGTTCGAACCAGTCAC 58.869 45.455 24.78 0.00 0.00 3.67
3105 3262 3.181470 TGACATCTTGTTCGAACCAGTCA 60.181 43.478 24.78 23.48 0.00 3.41
3106 3263 3.390135 TGACATCTTGTTCGAACCAGTC 58.610 45.455 24.78 21.61 0.00 3.51
3107 3264 3.469008 TGACATCTTGTTCGAACCAGT 57.531 42.857 24.78 15.15 0.00 4.00
3108 3265 5.503031 GCATATGACATCTTGTTCGAACCAG 60.503 44.000 24.78 22.46 0.00 4.00
3109 3266 4.332543 GCATATGACATCTTGTTCGAACCA 59.667 41.667 24.78 13.77 0.00 3.67
3110 3267 4.260784 GGCATATGACATCTTGTTCGAACC 60.261 45.833 24.78 8.52 0.00 3.62
3111 3268 4.572389 AGGCATATGACATCTTGTTCGAAC 59.428 41.667 21.42 21.42 0.00 3.95
3112 3269 4.769688 AGGCATATGACATCTTGTTCGAA 58.230 39.130 12.11 0.00 0.00 3.71
3113 3270 4.371786 GAGGCATATGACATCTTGTTCGA 58.628 43.478 12.11 0.00 0.00 3.71
3114 3271 3.496130 GGAGGCATATGACATCTTGTTCG 59.504 47.826 12.11 0.00 0.00 3.95
3115 3272 3.817647 GGGAGGCATATGACATCTTGTTC 59.182 47.826 12.11 0.00 0.00 3.18
3116 3273 3.435601 GGGGAGGCATATGACATCTTGTT 60.436 47.826 12.11 0.00 0.00 2.83
3117 3274 2.107204 GGGGAGGCATATGACATCTTGT 59.893 50.000 12.11 0.00 0.00 3.16
3118 3275 2.553904 GGGGGAGGCATATGACATCTTG 60.554 54.545 12.11 0.00 0.00 3.02
3119 3276 1.707427 GGGGGAGGCATATGACATCTT 59.293 52.381 12.11 0.00 0.00 2.40
3120 3277 1.366319 GGGGGAGGCATATGACATCT 58.634 55.000 12.11 0.00 0.00 2.90
3121 3278 0.036010 CGGGGGAGGCATATGACATC 60.036 60.000 12.11 7.24 0.00 3.06
3122 3279 0.768221 ACGGGGGAGGCATATGACAT 60.768 55.000 12.11 0.00 0.00 3.06
3123 3280 0.986019 AACGGGGGAGGCATATGACA 60.986 55.000 12.11 0.00 0.00 3.58
3124 3281 0.182775 AAACGGGGGAGGCATATGAC 59.817 55.000 6.97 2.74 0.00 3.06
3125 3282 0.923358 AAAACGGGGGAGGCATATGA 59.077 50.000 6.97 0.00 0.00 2.15
3126 3283 1.681264 GAAAAACGGGGGAGGCATATG 59.319 52.381 0.00 0.00 0.00 1.78
3127 3284 1.749286 CGAAAAACGGGGGAGGCATAT 60.749 52.381 0.00 0.00 38.46 1.78
3128 3285 0.393267 CGAAAAACGGGGGAGGCATA 60.393 55.000 0.00 0.00 38.46 3.14
3129 3286 1.677633 CGAAAAACGGGGGAGGCAT 60.678 57.895 0.00 0.00 38.46 4.40
3130 3287 2.281900 CGAAAAACGGGGGAGGCA 60.282 61.111 0.00 0.00 38.46 4.75
3138 3295 4.083812 GGAAGGGCCATACGAAAAACGG 62.084 54.545 6.18 0.00 40.78 4.44
3139 3296 1.131693 GGAAGGGCCATACGAAAAACG 59.868 52.381 6.18 0.00 41.65 3.60
3140 3297 1.475280 GGGAAGGGCCATACGAAAAAC 59.525 52.381 6.18 0.00 38.95 2.43
3141 3298 1.617533 GGGGAAGGGCCATACGAAAAA 60.618 52.381 6.18 0.00 38.95 1.94
3142 3299 0.033894 GGGGAAGGGCCATACGAAAA 60.034 55.000 6.18 0.00 38.95 2.29
3143 3300 1.610873 GGGGAAGGGCCATACGAAA 59.389 57.895 6.18 0.00 38.95 3.46
3144 3301 2.380285 GGGGGAAGGGCCATACGAA 61.380 63.158 6.18 0.00 38.95 3.85
3145 3302 2.770904 GGGGGAAGGGCCATACGA 60.771 66.667 6.18 0.00 38.95 3.43
3146 3303 4.250305 CGGGGGAAGGGCCATACG 62.250 72.222 6.18 0.00 38.95 3.06
3147 3304 4.581093 GCGGGGGAAGGGCCATAC 62.581 72.222 6.18 0.00 38.95 2.39
3152 3309 4.696805 AAAAGGCGGGGGAAGGGC 62.697 66.667 0.00 0.00 0.00 5.19
3153 3310 1.568118 TAGAAAAGGCGGGGGAAGGG 61.568 60.000 0.00 0.00 0.00 3.95
3154 3311 0.393944 GTAGAAAAGGCGGGGGAAGG 60.394 60.000 0.00 0.00 0.00 3.46
3155 3312 0.393944 GGTAGAAAAGGCGGGGGAAG 60.394 60.000 0.00 0.00 0.00 3.46
3156 3313 1.687014 GGTAGAAAAGGCGGGGGAA 59.313 57.895 0.00 0.00 0.00 3.97
3157 3314 2.303282 GGGTAGAAAAGGCGGGGGA 61.303 63.158 0.00 0.00 0.00 4.81
3158 3315 2.144859 TTGGGTAGAAAAGGCGGGGG 62.145 60.000 0.00 0.00 0.00 5.40
3159 3316 0.679960 CTTGGGTAGAAAAGGCGGGG 60.680 60.000 0.00 0.00 0.00 5.73
3160 3317 0.037734 ACTTGGGTAGAAAAGGCGGG 59.962 55.000 0.00 0.00 0.00 6.13
3161 3318 1.539827 CAACTTGGGTAGAAAAGGCGG 59.460 52.381 0.00 0.00 0.00 6.13
3162 3319 1.539827 CCAACTTGGGTAGAAAAGGCG 59.460 52.381 0.00 0.00 32.67 5.52
3163 3320 1.272490 GCCAACTTGGGTAGAAAAGGC 59.728 52.381 9.95 0.00 38.19 4.35
3164 3321 1.539827 CGCCAACTTGGGTAGAAAAGG 59.460 52.381 9.95 0.00 38.19 3.11
3165 3322 2.225727 GACGCCAACTTGGGTAGAAAAG 59.774 50.000 9.95 0.00 38.19 2.27
3166 3323 2.223745 GACGCCAACTTGGGTAGAAAA 58.776 47.619 9.95 0.00 38.19 2.29
3167 3324 1.874739 CGACGCCAACTTGGGTAGAAA 60.875 52.381 9.95 0.00 38.19 2.52
3168 3325 0.320073 CGACGCCAACTTGGGTAGAA 60.320 55.000 9.95 0.00 38.19 2.10
3169 3326 1.290955 CGACGCCAACTTGGGTAGA 59.709 57.895 9.95 0.00 38.19 2.59
3170 3327 1.740296 CCGACGCCAACTTGGGTAG 60.740 63.158 9.95 6.32 38.19 3.18
3171 3328 1.184322 TACCGACGCCAACTTGGGTA 61.184 55.000 9.95 0.47 38.19 3.69
3172 3329 2.444700 CTACCGACGCCAACTTGGGT 62.445 60.000 9.95 5.87 38.19 4.51
3173 3330 1.740296 CTACCGACGCCAACTTGGG 60.740 63.158 9.95 2.75 38.19 4.12
3174 3331 0.108329 ATCTACCGACGCCAACTTGG 60.108 55.000 3.10 3.10 41.55 3.61
3175 3332 1.722011 AATCTACCGACGCCAACTTG 58.278 50.000 0.00 0.00 0.00 3.16
3176 3333 2.467566 AAATCTACCGACGCCAACTT 57.532 45.000 0.00 0.00 0.00 2.66
3177 3334 3.598019 TTAAATCTACCGACGCCAACT 57.402 42.857 0.00 0.00 0.00 3.16
3178 3335 4.870221 ATTTAAATCTACCGACGCCAAC 57.130 40.909 0.00 0.00 0.00 3.77
3179 3336 5.417811 TGTATTTAAATCTACCGACGCCAA 58.582 37.500 3.39 0.00 0.00 4.52
3180 3337 5.008619 TGTATTTAAATCTACCGACGCCA 57.991 39.130 3.39 0.00 0.00 5.69
3181 3338 5.164119 CGATGTATTTAAATCTACCGACGCC 60.164 44.000 3.39 0.00 0.00 5.68
3182 3339 5.400485 ACGATGTATTTAAATCTACCGACGC 59.600 40.000 3.39 0.00 0.00 5.19
3183 3340 6.129273 CCACGATGTATTTAAATCTACCGACG 60.129 42.308 3.39 6.95 0.00 5.12
3184 3341 6.698766 ACCACGATGTATTTAAATCTACCGAC 59.301 38.462 3.39 0.00 0.00 4.79
3185 3342 6.698329 CACCACGATGTATTTAAATCTACCGA 59.302 38.462 3.39 0.00 0.00 4.69
3186 3343 6.073980 CCACCACGATGTATTTAAATCTACCG 60.074 42.308 3.39 7.53 0.00 4.02
3187 3344 6.764560 ACCACCACGATGTATTTAAATCTACC 59.235 38.462 3.39 0.00 0.00 3.18
3188 3345 7.781548 ACCACCACGATGTATTTAAATCTAC 57.218 36.000 3.39 0.00 0.00 2.59
3189 3346 9.537192 CTAACCACCACGATGTATTTAAATCTA 57.463 33.333 3.39 0.00 0.00 1.98
3190 3347 8.044908 ACTAACCACCACGATGTATTTAAATCT 58.955 33.333 3.39 0.00 0.00 2.40
3191 3348 8.205131 ACTAACCACCACGATGTATTTAAATC 57.795 34.615 3.39 0.00 0.00 2.17
3192 3349 8.570068 AACTAACCACCACGATGTATTTAAAT 57.430 30.769 5.89 5.89 0.00 1.40
3193 3350 7.982761 AACTAACCACCACGATGTATTTAAA 57.017 32.000 0.00 0.00 0.00 1.52
3194 3351 7.094720 CCAAACTAACCACCACGATGTATTTAA 60.095 37.037 0.00 0.00 0.00 1.52
3195 3352 6.372103 CCAAACTAACCACCACGATGTATTTA 59.628 38.462 0.00 0.00 0.00 1.40
3196 3353 5.182380 CCAAACTAACCACCACGATGTATTT 59.818 40.000 0.00 0.00 0.00 1.40
3197 3354 4.698304 CCAAACTAACCACCACGATGTATT 59.302 41.667 0.00 0.00 0.00 1.89
3198 3355 4.258543 CCAAACTAACCACCACGATGTAT 58.741 43.478 0.00 0.00 0.00 2.29
3199 3356 3.557475 CCCAAACTAACCACCACGATGTA 60.557 47.826 0.00 0.00 0.00 2.29
3200 3357 2.500229 CCAAACTAACCACCACGATGT 58.500 47.619 0.00 0.00 0.00 3.06
3201 3358 1.810151 CCCAAACTAACCACCACGATG 59.190 52.381 0.00 0.00 0.00 3.84
3202 3359 1.422402 ACCCAAACTAACCACCACGAT 59.578 47.619 0.00 0.00 0.00 3.73
3203 3360 0.838608 ACCCAAACTAACCACCACGA 59.161 50.000 0.00 0.00 0.00 4.35
3204 3361 0.948678 CACCCAAACTAACCACCACG 59.051 55.000 0.00 0.00 0.00 4.94
3205 3362 0.671796 GCACCCAAACTAACCACCAC 59.328 55.000 0.00 0.00 0.00 4.16
3206 3363 0.259065 TGCACCCAAACTAACCACCA 59.741 50.000 0.00 0.00 0.00 4.17
3207 3364 1.339929 CTTGCACCCAAACTAACCACC 59.660 52.381 0.00 0.00 0.00 4.61
3208 3365 2.293399 CTCTTGCACCCAAACTAACCAC 59.707 50.000 0.00 0.00 0.00 4.16
3209 3366 2.173782 TCTCTTGCACCCAAACTAACCA 59.826 45.455 0.00 0.00 0.00 3.67
3210 3367 2.552743 GTCTCTTGCACCCAAACTAACC 59.447 50.000 0.00 0.00 0.00 2.85
3211 3368 3.211045 TGTCTCTTGCACCCAAACTAAC 58.789 45.455 0.00 0.00 0.00 2.34
3212 3369 3.569194 TGTCTCTTGCACCCAAACTAA 57.431 42.857 0.00 0.00 0.00 2.24
3213 3370 3.788227 ATGTCTCTTGCACCCAAACTA 57.212 42.857 0.00 0.00 0.00 2.24
3214 3371 2.664402 ATGTCTCTTGCACCCAAACT 57.336 45.000 0.00 0.00 0.00 2.66
3215 3372 3.758554 ACATATGTCTCTTGCACCCAAAC 59.241 43.478 1.41 0.00 0.00 2.93
3216 3373 4.009675 GACATATGTCTCTTGCACCCAAA 58.990 43.478 25.52 0.00 41.65 3.28
3217 3374 3.609853 GACATATGTCTCTTGCACCCAA 58.390 45.455 25.52 0.00 41.65 4.12
3218 3375 2.092968 GGACATATGTCTCTTGCACCCA 60.093 50.000 29.87 0.00 44.20 4.51
3219 3376 2.565841 GGACATATGTCTCTTGCACCC 58.434 52.381 29.87 11.44 44.20 4.61
3220 3377 2.565841 GGGACATATGTCTCTTGCACC 58.434 52.381 29.87 19.01 42.18 5.01
3227 3384 7.633193 AATCGAGTATAGGGACATATGTCTC 57.367 40.000 29.87 27.87 45.72 3.36
3228 3385 8.330247 AGTAATCGAGTATAGGGACATATGTCT 58.670 37.037 29.87 17.08 44.20 3.41
3229 3386 8.508883 AGTAATCGAGTATAGGGACATATGTC 57.491 38.462 24.95 24.95 44.04 3.06
3230 3387 7.280428 CGAGTAATCGAGTATAGGGACATATGT 59.720 40.741 8.43 8.43 34.64 2.29
3231 3388 7.494952 TCGAGTAATCGAGTATAGGGACATATG 59.505 40.741 11.80 0.00 37.20 1.78
3232 3389 7.563020 TCGAGTAATCGAGTATAGGGACATAT 58.437 38.462 11.80 0.00 37.20 1.78
3233 3390 6.939622 TCGAGTAATCGAGTATAGGGACATA 58.060 40.000 11.80 0.00 37.20 2.29
3234 3391 5.802465 TCGAGTAATCGAGTATAGGGACAT 58.198 41.667 11.80 0.00 37.20 3.06
3235 3392 5.219343 TCGAGTAATCGAGTATAGGGACA 57.781 43.478 11.80 0.00 37.20 4.02
3236 3393 5.294060 GGATCGAGTAATCGAGTATAGGGAC 59.706 48.000 20.65 3.91 45.70 4.46
3237 3394 5.189342 AGGATCGAGTAATCGAGTATAGGGA 59.811 44.000 20.65 0.00 45.70 4.20
3238 3395 5.430007 AGGATCGAGTAATCGAGTATAGGG 58.570 45.833 20.65 0.00 45.70 3.53
3239 3396 7.040494 TGTAGGATCGAGTAATCGAGTATAGG 58.960 42.308 20.65 0.00 45.70 2.57
3240 3397 8.476657 TTGTAGGATCGAGTAATCGAGTATAG 57.523 38.462 20.65 0.00 45.70 1.31
3241 3398 8.837788 TTTGTAGGATCGAGTAATCGAGTATA 57.162 34.615 20.65 9.82 45.70 1.47
3242 3399 7.741027 TTTGTAGGATCGAGTAATCGAGTAT 57.259 36.000 20.65 10.75 45.70 2.12
3243 3400 7.741027 ATTTGTAGGATCGAGTAATCGAGTA 57.259 36.000 20.65 9.30 45.70 2.59
3244 3401 6.636562 ATTTGTAGGATCGAGTAATCGAGT 57.363 37.500 20.65 10.24 45.70 4.18
3245 3402 8.451748 TGATATTTGTAGGATCGAGTAATCGAG 58.548 37.037 20.65 0.00 45.70 4.04
3246 3403 8.331730 TGATATTTGTAGGATCGAGTAATCGA 57.668 34.615 18.39 18.39 46.58 3.59
3247 3404 8.451748 TCTGATATTTGTAGGATCGAGTAATCG 58.548 37.037 6.17 6.17 0.00 3.34
3248 3405 9.781834 CTCTGATATTTGTAGGATCGAGTAATC 57.218 37.037 0.00 0.00 0.00 1.75
3249 3406 9.521841 TCTCTGATATTTGTAGGATCGAGTAAT 57.478 33.333 0.00 0.00 0.00 1.89
3250 3407 8.784994 GTCTCTGATATTTGTAGGATCGAGTAA 58.215 37.037 0.00 0.00 0.00 2.24
3251 3408 7.390996 GGTCTCTGATATTTGTAGGATCGAGTA 59.609 40.741 0.00 0.00 0.00 2.59
3252 3409 6.207810 GGTCTCTGATATTTGTAGGATCGAGT 59.792 42.308 0.00 0.00 0.00 4.18
3253 3410 6.207614 TGGTCTCTGATATTTGTAGGATCGAG 59.792 42.308 0.00 0.00 0.00 4.04
3254 3411 6.068670 TGGTCTCTGATATTTGTAGGATCGA 58.931 40.000 0.00 0.00 0.00 3.59
3255 3412 6.332735 TGGTCTCTGATATTTGTAGGATCG 57.667 41.667 0.00 0.00 0.00 3.69
3256 3413 7.659390 CCTTTGGTCTCTGATATTTGTAGGATC 59.341 40.741 0.00 0.00 0.00 3.36
3257 3414 7.127955 ACCTTTGGTCTCTGATATTTGTAGGAT 59.872 37.037 0.00 0.00 0.00 3.24
3258 3415 6.443849 ACCTTTGGTCTCTGATATTTGTAGGA 59.556 38.462 0.00 0.00 0.00 2.94
3259 3416 6.653989 ACCTTTGGTCTCTGATATTTGTAGG 58.346 40.000 0.00 0.00 0.00 3.18
3260 3417 9.319143 CTAACCTTTGGTCTCTGATATTTGTAG 57.681 37.037 0.00 0.00 33.12 2.74
3261 3418 8.265055 CCTAACCTTTGGTCTCTGATATTTGTA 58.735 37.037 0.00 0.00 33.12 2.41
3262 3419 7.112779 CCTAACCTTTGGTCTCTGATATTTGT 58.887 38.462 0.00 0.00 33.12 2.83
3263 3420 6.543831 CCCTAACCTTTGGTCTCTGATATTTG 59.456 42.308 0.00 0.00 33.12 2.32
3264 3421 6.447084 TCCCTAACCTTTGGTCTCTGATATTT 59.553 38.462 0.00 0.00 33.12 1.40
3265 3422 5.970640 TCCCTAACCTTTGGTCTCTGATATT 59.029 40.000 0.00 0.00 33.12 1.28
3266 3423 5.538877 TCCCTAACCTTTGGTCTCTGATAT 58.461 41.667 0.00 0.00 33.12 1.63
3267 3424 4.955335 TCCCTAACCTTTGGTCTCTGATA 58.045 43.478 0.00 0.00 33.12 2.15
3268 3425 3.777522 CTCCCTAACCTTTGGTCTCTGAT 59.222 47.826 0.00 0.00 33.12 2.90
3269 3426 3.173965 CTCCCTAACCTTTGGTCTCTGA 58.826 50.000 0.00 0.00 33.12 3.27
3270 3427 2.907042 ACTCCCTAACCTTTGGTCTCTG 59.093 50.000 0.00 0.00 33.12 3.35
3271 3428 3.174779 GACTCCCTAACCTTTGGTCTCT 58.825 50.000 0.00 0.00 33.12 3.10
3272 3429 2.236644 GGACTCCCTAACCTTTGGTCTC 59.763 54.545 0.00 0.00 33.12 3.36
3273 3430 2.267192 GGACTCCCTAACCTTTGGTCT 58.733 52.381 0.00 0.00 33.12 3.85
3274 3431 1.982958 TGGACTCCCTAACCTTTGGTC 59.017 52.381 0.00 0.00 33.12 4.02
3275 3432 1.703513 GTGGACTCCCTAACCTTTGGT 59.296 52.381 0.00 0.00 37.65 3.67
3276 3433 1.702957 TGTGGACTCCCTAACCTTTGG 59.297 52.381 0.00 0.00 0.00 3.28
3277 3434 3.146847 GTTGTGGACTCCCTAACCTTTG 58.853 50.000 0.00 0.00 0.00 2.77
3278 3435 2.107726 GGTTGTGGACTCCCTAACCTTT 59.892 50.000 17.49 0.00 42.19 3.11
3279 3436 1.703513 GGTTGTGGACTCCCTAACCTT 59.296 52.381 17.49 0.00 42.19 3.50
3280 3437 1.132495 AGGTTGTGGACTCCCTAACCT 60.132 52.381 20.08 20.08 46.32 3.50
3281 3438 1.359168 AGGTTGTGGACTCCCTAACC 58.641 55.000 17.23 17.23 43.97 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.