Multiple sequence alignment - TraesCS6A01G312000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G312000 chr6A 100.000 5812 0 0 1 5812 548400263 548406074 0.000000e+00 10733
1 TraesCS6A01G312000 chr6D 95.906 2589 75 21 3225 5810 402118783 402121343 0.000000e+00 4165
2 TraesCS6A01G312000 chr6D 90.265 3061 142 73 239 3228 402115774 402118749 0.000000e+00 3858
3 TraesCS6A01G312000 chr6D 91.139 158 14 0 1 158 87372129 87371972 1.270000e-51 215
4 TraesCS6A01G312000 chr6B 87.981 2338 126 75 167 2448 602821009 602823247 0.000000e+00 2617
5 TraesCS6A01G312000 chr6B 94.979 1633 57 12 3225 4840 602824051 602825675 0.000000e+00 2538
6 TraesCS6A01G312000 chr6B 95.410 915 22 9 4897 5810 602825685 602826580 0.000000e+00 1439
7 TraesCS6A01G312000 chr6B 85.882 595 57 18 2641 3228 602823443 602824017 4.980000e-170 608
8 TraesCS6A01G312000 chr6B 95.570 158 6 1 1 158 559351174 559351330 9.670000e-63 252
9 TraesCS6A01G312000 chr3B 98.101 158 3 0 1 158 810338987 810338830 5.740000e-70 276
10 TraesCS6A01G312000 chr3B 90.625 160 12 3 1 159 681754027 681753870 5.900000e-50 209
11 TraesCS6A01G312000 chr5B 96.835 158 5 0 1 158 538262847 538263004 1.240000e-66 265
12 TraesCS6A01G312000 chr5B 91.139 158 14 0 1 158 75333911 75334068 1.270000e-51 215
13 TraesCS6A01G312000 chr2B 96.226 159 6 0 1 159 794751559 794751717 1.610000e-65 261
14 TraesCS6A01G312000 chr7B 95.597 159 7 0 1 159 674282948 674282790 7.470000e-64 255
15 TraesCS6A01G312000 chr4B 94.937 158 8 0 1 158 413820513 413820670 1.250000e-61 248
16 TraesCS6A01G312000 chr5D 89.362 94 7 1 2111 2201 189931081 189930988 1.320000e-21 115
17 TraesCS6A01G312000 chr2D 89.362 94 7 1 2111 2201 477222213 477222120 1.320000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G312000 chr6A 548400263 548406074 5811 False 10733.0 10733 100.0000 1 5812 1 chr6A.!!$F1 5811
1 TraesCS6A01G312000 chr6D 402115774 402121343 5569 False 4011.5 4165 93.0855 239 5810 2 chr6D.!!$F1 5571
2 TraesCS6A01G312000 chr6B 602821009 602826580 5571 False 1800.5 2617 91.0630 167 5810 4 chr6B.!!$F2 5643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.037419 CCCGGTTGATTTTTGCCAGG 60.037 55.0 0.00 0.00 0.0 4.45 F
691 727 0.104120 GCGGTTTGTTTTTGGCTCCT 59.896 50.0 0.00 0.00 0.0 3.69 F
1335 1409 0.036858 ACGGCAAGAAGAAGGAGCTC 60.037 55.0 4.71 4.71 0.0 4.09 F
2819 2973 0.758123 CTCTCTGGATTCTGGAGCCC 59.242 60.0 0.00 0.00 0.0 5.19 F
3833 4054 0.250234 CGAGCCAGGAATTGAGGACA 59.750 55.0 0.00 0.00 0.0 4.02 F
4397 4618 0.036858 GTGGAGTGCAGGAGAAGGTC 60.037 60.0 0.00 0.00 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1213 1284 1.682684 GCTTCGTGGAGGAGGAGGA 60.683 63.158 0.0 0.0 0.00 3.71 R
2483 2585 0.960364 TTTCTCGGTTCATGCCTGCC 60.960 55.000 0.0 0.0 0.00 4.85 R
3129 3301 0.673644 GTGGGTGACATCTTGACCGG 60.674 60.000 0.0 0.0 0.00 5.28 R
4279 4500 0.034767 CAGGAGCTTCTTGATGCCCA 60.035 55.000 0.0 0.0 0.00 5.36 R
4691 4915 0.593128 CTTCTTCTGGTGGCGGTTTG 59.407 55.000 0.0 0.0 0.00 2.93 R
5474 5702 1.576356 GAGATTTAGCCCGTCTGCTG 58.424 55.000 2.0 0.0 42.77 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.333009 TGGCCCACCAGCTAGATAA 57.667 52.632 0.00 0.00 42.67 1.75
24 25 1.590591 TGGCCCACCAGCTAGATAAA 58.409 50.000 0.00 0.00 42.67 1.40
25 26 2.135189 TGGCCCACCAGCTAGATAAAT 58.865 47.619 0.00 0.00 42.67 1.40
26 27 2.106511 TGGCCCACCAGCTAGATAAATC 59.893 50.000 0.00 0.00 42.67 2.17
27 28 2.553247 GGCCCACCAGCTAGATAAATCC 60.553 54.545 0.00 0.00 35.26 3.01
28 29 2.553247 GCCCACCAGCTAGATAAATCCC 60.553 54.545 0.00 0.00 0.00 3.85
29 30 2.289694 CCCACCAGCTAGATAAATCCCG 60.290 54.545 0.00 0.00 0.00 5.14
30 31 2.289694 CCACCAGCTAGATAAATCCCGG 60.290 54.545 0.00 0.00 0.00 5.73
31 32 2.368875 CACCAGCTAGATAAATCCCGGT 59.631 50.000 0.00 0.00 0.00 5.28
32 33 3.046374 ACCAGCTAGATAAATCCCGGTT 58.954 45.455 0.00 0.00 0.00 4.44
33 34 3.181454 ACCAGCTAGATAAATCCCGGTTG 60.181 47.826 0.00 0.00 0.00 3.77
34 35 3.071023 CCAGCTAGATAAATCCCGGTTGA 59.929 47.826 0.00 0.00 0.00 3.18
35 36 4.263068 CCAGCTAGATAAATCCCGGTTGAT 60.263 45.833 0.00 0.00 0.00 2.57
36 37 5.308825 CAGCTAGATAAATCCCGGTTGATT 58.691 41.667 0.00 0.00 36.53 2.57
37 38 5.765182 CAGCTAGATAAATCCCGGTTGATTT 59.235 40.000 18.75 18.75 44.77 2.17
38 39 6.263168 CAGCTAGATAAATCCCGGTTGATTTT 59.737 38.462 19.61 10.51 41.05 1.82
39 40 6.833933 AGCTAGATAAATCCCGGTTGATTTTT 59.166 34.615 19.61 13.83 41.05 1.94
40 41 6.918022 GCTAGATAAATCCCGGTTGATTTTTG 59.082 38.462 19.61 8.06 41.05 2.44
41 42 5.660460 AGATAAATCCCGGTTGATTTTTGC 58.340 37.500 19.61 11.65 41.05 3.68
42 43 2.760634 AATCCCGGTTGATTTTTGCC 57.239 45.000 0.00 0.00 30.88 4.52
43 44 1.638529 ATCCCGGTTGATTTTTGCCA 58.361 45.000 0.00 0.00 0.00 4.92
44 45 0.965439 TCCCGGTTGATTTTTGCCAG 59.035 50.000 0.00 0.00 0.00 4.85
45 46 0.037419 CCCGGTTGATTTTTGCCAGG 60.037 55.000 0.00 0.00 0.00 4.45
46 47 0.037419 CCGGTTGATTTTTGCCAGGG 60.037 55.000 0.00 0.00 0.00 4.45
47 48 0.678950 CGGTTGATTTTTGCCAGGGT 59.321 50.000 0.00 0.00 0.00 4.34
48 49 1.069978 CGGTTGATTTTTGCCAGGGTT 59.930 47.619 0.00 0.00 0.00 4.11
49 50 2.484594 CGGTTGATTTTTGCCAGGGTTT 60.485 45.455 0.00 0.00 0.00 3.27
50 51 2.877786 GGTTGATTTTTGCCAGGGTTTG 59.122 45.455 0.00 0.00 0.00 2.93
51 52 3.432890 GGTTGATTTTTGCCAGGGTTTGA 60.433 43.478 0.00 0.00 0.00 2.69
52 53 4.388485 GTTGATTTTTGCCAGGGTTTGAT 58.612 39.130 0.00 0.00 0.00 2.57
53 54 4.703379 TGATTTTTGCCAGGGTTTGATT 57.297 36.364 0.00 0.00 0.00 2.57
54 55 5.046288 TGATTTTTGCCAGGGTTTGATTT 57.954 34.783 0.00 0.00 0.00 2.17
55 56 6.179906 TGATTTTTGCCAGGGTTTGATTTA 57.820 33.333 0.00 0.00 0.00 1.40
56 57 6.229733 TGATTTTTGCCAGGGTTTGATTTAG 58.770 36.000 0.00 0.00 0.00 1.85
57 58 5.878406 TTTTTGCCAGGGTTTGATTTAGA 57.122 34.783 0.00 0.00 0.00 2.10
58 59 4.864704 TTTGCCAGGGTTTGATTTAGAC 57.135 40.909 0.00 0.00 0.00 2.59
59 60 2.802719 TGCCAGGGTTTGATTTAGACC 58.197 47.619 0.00 0.00 0.00 3.85
60 61 1.743394 GCCAGGGTTTGATTTAGACCG 59.257 52.381 0.00 0.00 34.22 4.79
61 62 2.365582 CCAGGGTTTGATTTAGACCGG 58.634 52.381 0.00 0.00 34.22 5.28
62 63 2.365582 CAGGGTTTGATTTAGACCGGG 58.634 52.381 6.32 0.00 34.22 5.73
63 64 2.026636 CAGGGTTTGATTTAGACCGGGA 60.027 50.000 6.32 0.00 34.22 5.14
64 65 2.850568 AGGGTTTGATTTAGACCGGGAT 59.149 45.455 6.32 0.00 34.22 3.85
65 66 3.268595 AGGGTTTGATTTAGACCGGGATT 59.731 43.478 6.32 0.00 34.22 3.01
66 67 4.475747 AGGGTTTGATTTAGACCGGGATTA 59.524 41.667 6.32 0.00 34.22 1.75
67 68 4.577693 GGGTTTGATTTAGACCGGGATTAC 59.422 45.833 6.32 0.00 34.22 1.89
68 69 5.187687 GGTTTGATTTAGACCGGGATTACA 58.812 41.667 6.32 0.00 0.00 2.41
69 70 5.826208 GGTTTGATTTAGACCGGGATTACAT 59.174 40.000 6.32 0.00 0.00 2.29
70 71 6.993902 GGTTTGATTTAGACCGGGATTACATA 59.006 38.462 6.32 0.00 0.00 2.29
71 72 7.172703 GGTTTGATTTAGACCGGGATTACATAG 59.827 40.741 6.32 0.00 0.00 2.23
72 73 6.989155 TGATTTAGACCGGGATTACATAGT 57.011 37.500 6.32 0.00 0.00 2.12
73 74 7.369551 TGATTTAGACCGGGATTACATAGTT 57.630 36.000 6.32 0.00 0.00 2.24
74 75 7.439381 TGATTTAGACCGGGATTACATAGTTC 58.561 38.462 6.32 0.00 0.00 3.01
75 76 6.795144 TTTAGACCGGGATTACATAGTTCA 57.205 37.500 6.32 0.00 0.00 3.18
76 77 6.795144 TTAGACCGGGATTACATAGTTCAA 57.205 37.500 6.32 0.00 0.00 2.69
77 78 5.277857 AGACCGGGATTACATAGTTCAAG 57.722 43.478 6.32 0.00 0.00 3.02
78 79 4.101119 AGACCGGGATTACATAGTTCAAGG 59.899 45.833 6.32 0.00 0.00 3.61
79 80 3.778629 ACCGGGATTACATAGTTCAAGGT 59.221 43.478 6.32 0.00 0.00 3.50
80 81 4.127171 CCGGGATTACATAGTTCAAGGTG 58.873 47.826 0.00 0.00 0.00 4.00
81 82 3.560068 CGGGATTACATAGTTCAAGGTGC 59.440 47.826 0.00 0.00 0.00 5.01
82 83 4.523083 GGGATTACATAGTTCAAGGTGCA 58.477 43.478 0.00 0.00 0.00 4.57
83 84 4.947388 GGGATTACATAGTTCAAGGTGCAA 59.053 41.667 0.00 0.00 0.00 4.08
84 85 5.594317 GGGATTACATAGTTCAAGGTGCAAT 59.406 40.000 0.00 0.00 0.00 3.56
85 86 6.238759 GGGATTACATAGTTCAAGGTGCAATC 60.239 42.308 0.00 0.00 0.00 2.67
86 87 5.794687 TTACATAGTTCAAGGTGCAATCG 57.205 39.130 0.00 0.00 0.00 3.34
87 88 3.937814 ACATAGTTCAAGGTGCAATCGA 58.062 40.909 0.00 0.00 0.00 3.59
88 89 3.684788 ACATAGTTCAAGGTGCAATCGAC 59.315 43.478 0.00 0.00 0.00 4.20
89 90 1.523758 AGTTCAAGGTGCAATCGACC 58.476 50.000 0.00 0.00 0.00 4.79
90 91 0.165944 GTTCAAGGTGCAATCGACCG 59.834 55.000 0.00 0.00 38.64 4.79
91 92 0.953471 TTCAAGGTGCAATCGACCGG 60.953 55.000 0.00 0.00 38.64 5.28
92 93 2.046314 AAGGTGCAATCGACCGGG 60.046 61.111 6.32 0.00 38.64 5.73
93 94 2.589157 AAGGTGCAATCGACCGGGA 61.589 57.895 6.32 0.00 38.64 5.14
94 95 1.910580 AAGGTGCAATCGACCGGGAT 61.911 55.000 6.32 0.00 38.64 3.85
95 96 1.451387 GGTGCAATCGACCGGGATT 60.451 57.895 6.32 2.83 37.11 3.01
96 97 1.029947 GGTGCAATCGACCGGGATTT 61.030 55.000 6.32 0.00 34.50 2.17
97 98 0.808755 GTGCAATCGACCGGGATTTT 59.191 50.000 6.32 0.00 34.50 1.82
98 99 0.808125 TGCAATCGACCGGGATTTTG 59.192 50.000 6.32 5.74 34.50 2.44
99 100 1.091537 GCAATCGACCGGGATTTTGA 58.908 50.000 6.32 0.00 34.50 2.69
100 101 1.202143 GCAATCGACCGGGATTTTGAC 60.202 52.381 6.32 0.00 34.50 3.18
101 102 2.356135 CAATCGACCGGGATTTTGACT 58.644 47.619 6.32 0.00 34.50 3.41
102 103 2.747446 CAATCGACCGGGATTTTGACTT 59.253 45.455 6.32 0.00 34.50 3.01
103 104 1.803334 TCGACCGGGATTTTGACTTG 58.197 50.000 6.32 0.00 0.00 3.16
104 105 0.802494 CGACCGGGATTTTGACTTGG 59.198 55.000 6.32 0.00 0.00 3.61
105 106 1.173913 GACCGGGATTTTGACTTGGG 58.826 55.000 6.32 0.00 0.00 4.12
106 107 0.251608 ACCGGGATTTTGACTTGGGG 60.252 55.000 6.32 0.00 0.00 4.96
107 108 0.970427 CCGGGATTTTGACTTGGGGG 60.970 60.000 0.00 0.00 0.00 5.40
108 109 0.251608 CGGGATTTTGACTTGGGGGT 60.252 55.000 0.00 0.00 0.00 4.95
109 110 1.825641 CGGGATTTTGACTTGGGGGTT 60.826 52.381 0.00 0.00 0.00 4.11
110 111 1.899814 GGGATTTTGACTTGGGGGTTC 59.100 52.381 0.00 0.00 0.00 3.62
111 112 2.604139 GGATTTTGACTTGGGGGTTCA 58.396 47.619 0.00 0.00 0.00 3.18
112 113 3.173151 GGATTTTGACTTGGGGGTTCAT 58.827 45.455 0.00 0.00 0.00 2.57
113 114 3.582647 GGATTTTGACTTGGGGGTTCATT 59.417 43.478 0.00 0.00 0.00 2.57
114 115 4.041567 GGATTTTGACTTGGGGGTTCATTT 59.958 41.667 0.00 0.00 0.00 2.32
115 116 4.681074 TTTTGACTTGGGGGTTCATTTC 57.319 40.909 0.00 0.00 0.00 2.17
116 117 1.904287 TGACTTGGGGGTTCATTTCG 58.096 50.000 0.00 0.00 0.00 3.46
117 118 1.144093 TGACTTGGGGGTTCATTTCGT 59.856 47.619 0.00 0.00 0.00 3.85
118 119 1.810755 GACTTGGGGGTTCATTTCGTC 59.189 52.381 0.00 0.00 0.00 4.20
119 120 0.802494 CTTGGGGGTTCATTTCGTCG 59.198 55.000 0.00 0.00 0.00 5.12
120 121 0.397187 TTGGGGGTTCATTTCGTCGA 59.603 50.000 0.00 0.00 0.00 4.20
121 122 0.397187 TGGGGGTTCATTTCGTCGAA 59.603 50.000 2.90 2.90 0.00 3.71
122 123 0.800631 GGGGGTTCATTTCGTCGAAC 59.199 55.000 7.29 0.00 40.64 3.95
126 127 1.804601 GTTCATTTCGTCGAACCCCT 58.195 50.000 7.29 0.00 36.36 4.79
127 128 2.963432 GTTCATTTCGTCGAACCCCTA 58.037 47.619 7.29 0.00 36.36 3.53
128 129 2.660189 TCATTTCGTCGAACCCCTAC 57.340 50.000 7.29 0.00 0.00 3.18
129 130 1.894466 TCATTTCGTCGAACCCCTACA 59.106 47.619 7.29 0.00 0.00 2.74
130 131 2.299582 TCATTTCGTCGAACCCCTACAA 59.700 45.455 7.29 0.00 0.00 2.41
131 132 2.906691 TTTCGTCGAACCCCTACAAA 57.093 45.000 7.29 0.00 0.00 2.83
132 133 3.405823 TTTCGTCGAACCCCTACAAAT 57.594 42.857 7.29 0.00 0.00 2.32
133 134 3.405823 TTCGTCGAACCCCTACAAATT 57.594 42.857 2.90 0.00 0.00 1.82
134 135 2.963432 TCGTCGAACCCCTACAAATTC 58.037 47.619 0.00 0.00 0.00 2.17
135 136 2.299582 TCGTCGAACCCCTACAAATTCA 59.700 45.455 0.00 0.00 0.00 2.57
136 137 3.068560 CGTCGAACCCCTACAAATTCAA 58.931 45.455 0.00 0.00 0.00 2.69
137 138 3.124636 CGTCGAACCCCTACAAATTCAAG 59.875 47.826 0.00 0.00 0.00 3.02
138 139 3.439129 GTCGAACCCCTACAAATTCAAGG 59.561 47.826 0.00 0.00 0.00 3.61
139 140 3.073356 TCGAACCCCTACAAATTCAAGGT 59.927 43.478 0.00 0.00 0.00 3.50
140 141 3.824443 CGAACCCCTACAAATTCAAGGTT 59.176 43.478 0.00 0.00 38.78 3.50
141 142 4.279922 CGAACCCCTACAAATTCAAGGTTT 59.720 41.667 0.00 0.00 36.30 3.27
142 143 5.474189 CGAACCCCTACAAATTCAAGGTTTA 59.526 40.000 0.00 0.00 36.30 2.01
143 144 6.016108 CGAACCCCTACAAATTCAAGGTTTAA 60.016 38.462 0.00 0.00 36.30 1.52
144 145 7.470286 CGAACCCCTACAAATTCAAGGTTTAAA 60.470 37.037 0.00 0.00 36.30 1.52
145 146 7.678207 ACCCCTACAAATTCAAGGTTTAAAA 57.322 32.000 0.00 0.00 0.00 1.52
146 147 8.270137 ACCCCTACAAATTCAAGGTTTAAAAT 57.730 30.769 0.00 0.00 0.00 1.82
147 148 8.154203 ACCCCTACAAATTCAAGGTTTAAAATG 58.846 33.333 0.00 0.00 0.00 2.32
148 149 7.606073 CCCCTACAAATTCAAGGTTTAAAATGG 59.394 37.037 0.00 0.00 0.00 3.16
149 150 8.371699 CCCTACAAATTCAAGGTTTAAAATGGA 58.628 33.333 0.00 0.00 0.00 3.41
150 151 9.203421 CCTACAAATTCAAGGTTTAAAATGGAC 57.797 33.333 0.00 0.00 0.00 4.02
151 152 9.981114 CTACAAATTCAAGGTTTAAAATGGACT 57.019 29.630 0.00 0.00 0.00 3.85
153 154 9.679661 ACAAATTCAAGGTTTAAAATGGACTTT 57.320 25.926 0.00 0.00 0.00 2.66
157 158 8.725405 TTCAAGGTTTAAAATGGACTTTTTCC 57.275 30.769 0.00 0.00 46.13 3.13
158 159 7.276658 TCAAGGTTTAAAATGGACTTTTTCCC 58.723 34.615 0.00 0.00 45.17 3.97
159 160 6.182507 AGGTTTAAAATGGACTTTTTCCCC 57.817 37.500 0.00 0.00 45.17 4.81
160 161 5.908831 AGGTTTAAAATGGACTTTTTCCCCT 59.091 36.000 0.00 2.54 45.17 4.79
161 162 6.042781 AGGTTTAAAATGGACTTTTTCCCCTC 59.957 38.462 0.00 0.00 45.17 4.30
162 163 6.228258 GTTTAAAATGGACTTTTTCCCCTCC 58.772 40.000 0.00 0.00 45.17 4.30
163 164 3.923273 AAATGGACTTTTTCCCCTCCT 57.077 42.857 0.00 0.00 45.17 3.69
164 165 2.907458 ATGGACTTTTTCCCCTCCTG 57.093 50.000 0.00 0.00 45.17 3.86
165 166 0.777446 TGGACTTTTTCCCCTCCTGG 59.223 55.000 0.00 0.00 45.17 4.45
203 204 3.726517 CAACGTTCGGCCTGCAGG 61.727 66.667 29.34 29.34 38.53 4.85
261 262 4.907034 CTGGGCGACGACGATCCG 62.907 72.222 12.29 3.20 42.66 4.18
373 392 2.724358 CGCGCGTCCAAACCAAAC 60.724 61.111 24.19 0.00 0.00 2.93
374 393 2.354188 GCGCGTCCAAACCAAACC 60.354 61.111 8.43 0.00 0.00 3.27
375 394 2.333581 CGCGTCCAAACCAAACCC 59.666 61.111 0.00 0.00 0.00 4.11
376 395 2.732016 GCGTCCAAACCAAACCCC 59.268 61.111 0.00 0.00 0.00 4.95
401 420 4.457496 CCCACCACTCGCGCAGAT 62.457 66.667 8.75 0.00 0.00 2.90
414 433 0.445436 CGCAGATGGTTGAGTTGAGC 59.555 55.000 0.00 0.00 0.00 4.26
445 464 3.089784 GCAGTGCGTTCATACCGG 58.910 61.111 0.00 0.00 0.00 5.28
446 465 2.461110 GCAGTGCGTTCATACCGGG 61.461 63.158 6.32 0.00 0.00 5.73
448 467 2.435234 GTGCGTTCATACCGGGCA 60.435 61.111 6.32 0.00 0.00 5.36
451 470 2.036006 GCGTTCATACCGGGCACAA 61.036 57.895 6.32 0.00 0.00 3.33
452 471 1.579084 GCGTTCATACCGGGCACAAA 61.579 55.000 6.32 0.00 0.00 2.83
453 472 0.446222 CGTTCATACCGGGCACAAAG 59.554 55.000 6.32 0.00 0.00 2.77
454 473 1.530323 GTTCATACCGGGCACAAAGT 58.470 50.000 6.32 0.00 0.00 2.66
476 506 3.736100 TGCATTTGGAGCGCGTGG 61.736 61.111 8.43 0.00 33.85 4.94
500 530 4.753662 TGGTCCGGTCCGCTAGCT 62.754 66.667 13.93 0.00 0.00 3.32
505 535 2.711922 CCGGTCCGCTAGCTCTGTT 61.712 63.158 13.93 0.00 0.00 3.16
595 626 1.634702 GCAAACAGCCAACGAAACAA 58.365 45.000 0.00 0.00 37.23 2.83
596 627 1.996191 GCAAACAGCCAACGAAACAAA 59.004 42.857 0.00 0.00 37.23 2.83
597 628 2.413453 GCAAACAGCCAACGAAACAAAA 59.587 40.909 0.00 0.00 37.23 2.44
598 629 3.483411 GCAAACAGCCAACGAAACAAAAG 60.483 43.478 0.00 0.00 37.23 2.27
599 630 2.577449 ACAGCCAACGAAACAAAAGG 57.423 45.000 0.00 0.00 0.00 3.11
600 631 2.096248 ACAGCCAACGAAACAAAAGGA 58.904 42.857 0.00 0.00 0.00 3.36
601 632 2.099098 ACAGCCAACGAAACAAAAGGAG 59.901 45.455 0.00 0.00 0.00 3.69
602 633 1.681264 AGCCAACGAAACAAAAGGAGG 59.319 47.619 0.00 0.00 0.00 4.30
603 634 1.269569 GCCAACGAAACAAAAGGAGGG 60.270 52.381 0.00 0.00 0.00 4.30
687 723 2.623718 GCGCGGTTTGTTTTTGGC 59.376 55.556 8.83 0.00 0.00 4.52
689 725 1.817217 GCGCGGTTTGTTTTTGGCTC 61.817 55.000 8.83 0.00 0.00 4.70
690 726 1.212455 CGCGGTTTGTTTTTGGCTCC 61.212 55.000 0.00 0.00 0.00 4.70
691 727 0.104120 GCGGTTTGTTTTTGGCTCCT 59.896 50.000 0.00 0.00 0.00 3.69
692 728 1.868109 GCGGTTTGTTTTTGGCTCCTC 60.868 52.381 0.00 0.00 0.00 3.71
697 733 0.560688 TGTTTTTGGCTCCTCCCCTT 59.439 50.000 0.00 0.00 0.00 3.95
700 736 1.800229 TTTTGGCTCCTCCCCTTCCC 61.800 60.000 0.00 0.00 0.00 3.97
702 738 2.286502 GGCTCCTCCCCTTCCCTT 60.287 66.667 0.00 0.00 0.00 3.95
704 740 2.379459 GCTCCTCCCCTTCCCTTCC 61.379 68.421 0.00 0.00 0.00 3.46
705 741 1.398234 CTCCTCCCCTTCCCTTCCT 59.602 63.158 0.00 0.00 0.00 3.36
706 742 0.253394 CTCCTCCCCTTCCCTTCCTT 60.253 60.000 0.00 0.00 0.00 3.36
707 743 0.253207 TCCTCCCCTTCCCTTCCTTC 60.253 60.000 0.00 0.00 0.00 3.46
708 744 1.282653 CCTCCCCTTCCCTTCCTTCC 61.283 65.000 0.00 0.00 0.00 3.46
709 745 0.253394 CTCCCCTTCCCTTCCTTCCT 60.253 60.000 0.00 0.00 0.00 3.36
710 746 0.253207 TCCCCTTCCCTTCCTTCCTC 60.253 60.000 0.00 0.00 0.00 3.71
711 747 1.627297 CCCCTTCCCTTCCTTCCTCG 61.627 65.000 0.00 0.00 0.00 4.63
712 748 1.222113 CCTTCCCTTCCTTCCTCGC 59.778 63.158 0.00 0.00 0.00 5.03
713 749 1.153549 CTTCCCTTCCTTCCTCGCG 60.154 63.158 0.00 0.00 0.00 5.87
714 750 1.605058 CTTCCCTTCCTTCCTCGCGA 61.605 60.000 9.26 9.26 0.00 5.87
715 751 1.885163 TTCCCTTCCTTCCTCGCGAC 61.885 60.000 3.71 0.00 0.00 5.19
716 752 2.202623 CCTTCCTTCCTCGCGACG 60.203 66.667 3.71 0.39 0.00 5.12
733 769 4.389576 GCCAGGCAACGCGTCTTG 62.390 66.667 14.44 9.85 46.39 3.02
740 776 3.041940 AACGCGTCTTGGCTTCGG 61.042 61.111 14.44 0.00 0.00 4.30
775 811 3.055719 CCAACCATCGTGCCGCTT 61.056 61.111 0.00 0.00 0.00 4.68
842 879 0.454196 AAGTCAAAACGCACCACCAC 59.546 50.000 0.00 0.00 0.00 4.16
843 880 1.065109 GTCAAAACGCACCACCACC 59.935 57.895 0.00 0.00 0.00 4.61
844 881 1.378646 TCAAAACGCACCACCACCA 60.379 52.632 0.00 0.00 0.00 4.17
845 882 0.965866 TCAAAACGCACCACCACCAA 60.966 50.000 0.00 0.00 0.00 3.67
846 883 0.527385 CAAAACGCACCACCACCAAG 60.527 55.000 0.00 0.00 0.00 3.61
847 884 0.968393 AAAACGCACCACCACCAAGT 60.968 50.000 0.00 0.00 0.00 3.16
848 885 1.381165 AAACGCACCACCACCAAGTC 61.381 55.000 0.00 0.00 0.00 3.01
849 886 2.978010 CGCACCACCACCAAGTCC 60.978 66.667 0.00 0.00 0.00 3.85
851 888 2.923035 CACCACCACCAAGTCCCA 59.077 61.111 0.00 0.00 0.00 4.37
852 889 1.228793 CACCACCACCAAGTCCCAA 59.771 57.895 0.00 0.00 0.00 4.12
853 890 1.106944 CACCACCACCAAGTCCCAAC 61.107 60.000 0.00 0.00 0.00 3.77
854 891 1.530655 CCACCACCAAGTCCCAACC 60.531 63.158 0.00 0.00 0.00 3.77
866 910 0.105760 TCCCAACCCAGCACAACAAT 60.106 50.000 0.00 0.00 0.00 2.71
909 958 4.332637 GCACAACTGCGGCACCAG 62.333 66.667 0.00 1.72 38.78 4.00
1030 1092 2.684104 CTCTCCTCCCCGTCCTCA 59.316 66.667 0.00 0.00 0.00 3.86
1213 1284 4.049817 AGTCCGCCTCCTCGTCCT 62.050 66.667 0.00 0.00 0.00 3.85
1214 1285 3.519930 GTCCGCCTCCTCGTCCTC 61.520 72.222 0.00 0.00 0.00 3.71
1215 1286 4.816984 TCCGCCTCCTCGTCCTCC 62.817 72.222 0.00 0.00 0.00 4.30
1335 1409 0.036858 ACGGCAAGAAGAAGGAGCTC 60.037 55.000 4.71 4.71 0.00 4.09
1495 1572 2.052690 TTCGAGAAGGAGGGCGAGG 61.053 63.158 0.00 0.00 34.01 4.63
1496 1573 3.532155 CGAGAAGGAGGGCGAGGG 61.532 72.222 0.00 0.00 0.00 4.30
1497 1574 3.855853 GAGAAGGAGGGCGAGGGC 61.856 72.222 0.00 0.00 38.90 5.19
1740 1817 1.153939 CAGCTCGTCCTTCTCCGTG 60.154 63.158 0.00 0.00 0.00 4.94
1795 1872 3.023118 CGATCGCCGTCAGCTCTA 58.977 61.111 0.26 0.00 40.39 2.43
1962 2051 3.717294 CCACCAGCGCCTAAGGGT 61.717 66.667 2.29 0.97 34.45 4.34
2097 2186 1.151587 TGGAAAGAAGGGAGGGCCT 60.152 57.895 5.25 5.25 0.00 5.19
2377 2470 3.379372 TCTCGTGCATTACTACTGGGTAC 59.621 47.826 0.00 0.00 0.00 3.34
2419 2521 3.643320 TGCATAGGAATGTAGTGCTAGCT 59.357 43.478 17.23 0.00 36.78 3.32
2444 2546 2.462456 ACGAACAGTGAGTCATGCAT 57.538 45.000 0.00 0.00 0.00 3.96
2445 2547 2.071540 ACGAACAGTGAGTCATGCATG 58.928 47.619 21.07 21.07 0.00 4.06
2446 2548 1.395954 CGAACAGTGAGTCATGCATGG 59.604 52.381 25.97 10.76 0.00 3.66
2447 2549 2.703416 GAACAGTGAGTCATGCATGGA 58.297 47.619 25.97 10.50 0.00 3.41
2466 2568 2.437413 GATGGAACCCTGAACCTTGAC 58.563 52.381 0.00 0.00 0.00 3.18
2472 2574 0.875059 CCCTGAACCTTGACGAAAGC 59.125 55.000 0.00 0.00 34.24 3.51
2483 2585 1.338105 TGACGAAAGCAGGACCATCAG 60.338 52.381 0.00 0.00 0.00 2.90
2500 2631 2.268920 GGCAGGCATGAACCGAGA 59.731 61.111 0.62 0.00 33.69 4.04
2530 2661 5.062308 CCACTAGCATTACGTTCTCTGAAAC 59.938 44.000 0.00 0.00 0.00 2.78
2555 2686 1.957177 CTCGATTAGCACCCTAGCTGA 59.043 52.381 0.00 0.00 46.11 4.26
2557 2688 1.683917 CGATTAGCACCCTAGCTGAGT 59.316 52.381 0.00 0.00 46.11 3.41
2558 2689 2.101582 CGATTAGCACCCTAGCTGAGTT 59.898 50.000 0.00 0.00 46.11 3.01
2559 2690 3.318275 CGATTAGCACCCTAGCTGAGTTA 59.682 47.826 0.00 0.00 46.11 2.24
2588 2722 3.248602 GCATAATGGTAGCTGTAGTGTGC 59.751 47.826 0.00 0.00 0.00 4.57
2616 2750 1.783711 GAAGATGATGCGCGTAGTGAG 59.216 52.381 8.43 0.00 43.07 3.51
2759 2912 2.476320 GCAGCATCCTCGAAAGGGC 61.476 63.158 0.00 0.00 43.56 5.19
2819 2973 0.758123 CTCTCTGGATTCTGGAGCCC 59.242 60.000 0.00 0.00 0.00 5.19
2923 3094 1.947642 GGGTATACGAGTTGGCGCG 60.948 63.158 0.00 0.00 43.45 6.86
2956 3127 4.024472 TCGTTGAACGAGCATGAAATTCAA 60.024 37.500 17.28 3.92 46.73 2.69
2975 3146 8.556213 AATTCAATTCACATTTGCTTTGCTAT 57.444 26.923 0.00 0.00 0.00 2.97
2977 3148 6.927416 TCAATTCACATTTGCTTTGCTATCT 58.073 32.000 0.00 0.00 0.00 1.98
3001 3172 5.416947 ACCTTGACAGAATCAACCGTATAC 58.583 41.667 0.00 0.00 42.62 1.47
3007 3178 8.002984 TGACAGAATCAACCGTATACTTATGA 57.997 34.615 0.56 2.93 33.02 2.15
3008 3179 8.638873 TGACAGAATCAACCGTATACTTATGAT 58.361 33.333 0.56 5.06 33.02 2.45
3018 3189 9.555727 AACCGTATACTTATGATTTTGTGCTAT 57.444 29.630 0.56 0.00 0.00 2.97
3041 3212 3.741856 TGTTTAGCTTGTTTGATCGCGTA 59.258 39.130 5.77 0.00 0.00 4.42
3107 3279 4.077822 GCAATGATGGGAGGATTTAGGAG 58.922 47.826 0.00 0.00 0.00 3.69
3129 3301 1.305930 GGATGTGGACGCCTTGAACC 61.306 60.000 0.00 0.00 0.00 3.62
3155 3327 4.214332 GTCAAGATGTCACCCACTTTTCTC 59.786 45.833 0.00 0.00 0.00 2.87
3198 3371 4.314440 GCTCTGCCACGTCACCCA 62.314 66.667 0.00 0.00 0.00 4.51
3220 3393 7.102346 CCCATCCAGTCATAAGAGAATCATAC 58.898 42.308 0.00 0.00 37.82 2.39
3280 3495 2.039084 AGCTAGTGTTCAGAAACTGGGG 59.961 50.000 0.00 2.11 36.30 4.96
3314 3529 3.181513 CCAGCTTTGTGTGATCGATTCAG 60.182 47.826 0.00 0.00 34.17 3.02
3743 3964 1.361993 GTTTGCCCGTGTCAATGCA 59.638 52.632 0.00 0.00 0.00 3.96
3833 4054 0.250234 CGAGCCAGGAATTGAGGACA 59.750 55.000 0.00 0.00 0.00 4.02
3842 4063 1.821136 GAATTGAGGACAAAGGGGCTG 59.179 52.381 0.00 0.00 39.54 4.85
3854 4075 4.341235 ACAAAGGGGCTGTTCTTTAAACTC 59.659 41.667 0.00 0.00 32.60 3.01
3857 4078 3.082548 GGGGCTGTTCTTTAAACTCCTC 58.917 50.000 0.00 0.00 0.00 3.71
4034 4255 2.034221 GAGGGGAAACGCCTTGCT 59.966 61.111 8.65 0.00 46.94 3.91
4051 4272 0.512952 GCTGTCAACCGCAACTACAG 59.487 55.000 0.00 0.00 40.38 2.74
4086 4307 0.615827 TAGCCTCTCCAAGAGCAGCA 60.616 55.000 0.00 0.00 40.98 4.41
4088 4309 0.394080 GCCTCTCCAAGAGCAGCATT 60.394 55.000 0.00 0.00 40.98 3.56
4090 4311 1.339824 CCTCTCCAAGAGCAGCATTGT 60.340 52.381 8.96 0.00 40.98 2.71
4279 4500 1.183549 ATCTTAGGCAACCGACTCGT 58.816 50.000 0.00 0.00 37.17 4.18
4397 4618 0.036858 GTGGAGTGCAGGAGAAGGTC 60.037 60.000 0.00 0.00 0.00 3.85
4457 4678 1.282157 GGTGCTACCAAGGACAGGAAT 59.718 52.381 0.00 0.00 45.33 3.01
4460 4681 1.065126 GCTACCAAGGACAGGAATGCT 60.065 52.381 0.00 0.00 0.00 3.79
4579 4800 1.303948 CACCCCCATCATCACAGCA 59.696 57.895 0.00 0.00 0.00 4.41
4586 4807 2.296752 CCCATCATCACAGCAAACAACA 59.703 45.455 0.00 0.00 0.00 3.33
4658 4882 1.078497 TGATGGTGCTAAGGCGGTG 60.078 57.895 0.00 0.00 42.25 4.94
4787 5011 3.282745 GAAGGACGGCGCAGACTCA 62.283 63.158 16.26 0.00 0.00 3.41
4796 5020 0.373024 GCGCAGACTCAGATTCAAGC 59.627 55.000 0.30 0.00 0.00 4.01
4900 5124 4.806247 GGTTAGCTGCAGACTGTACATAAG 59.194 45.833 20.43 0.00 0.00 1.73
4911 5135 8.726988 GCAGACTGTACATAAGGAAATTGTTTA 58.273 33.333 3.99 0.00 0.00 2.01
4940 5167 7.060421 TGGTTCTTTTCTCCAGTTCTTTACAT 58.940 34.615 0.00 0.00 0.00 2.29
4941 5168 7.013274 TGGTTCTTTTCTCCAGTTCTTTACATG 59.987 37.037 0.00 0.00 0.00 3.21
4942 5169 7.228706 GGTTCTTTTCTCCAGTTCTTTACATGA 59.771 37.037 0.00 0.00 0.00 3.07
5007 5234 8.804743 CAGAAATTGAATTTGATGTGCAGATAC 58.195 33.333 8.03 0.00 31.47 2.24
5017 5244 2.937519 TGTGCAGATACCAACAAACCA 58.062 42.857 0.00 0.00 0.00 3.67
5239 5466 6.942532 TTGGAATCTGGAATATAACACAGC 57.057 37.500 0.00 0.00 0.00 4.40
5474 5702 4.676018 GCTAGTAAATCCATCGTTCGTCTC 59.324 45.833 0.00 0.00 0.00 3.36
5614 5843 1.195448 CTGTACGCCAAGAAGCAAGTG 59.805 52.381 0.00 0.00 0.00 3.16
5733 5962 2.825532 AGGAGTGAGTTTCTCTGCTCTC 59.174 50.000 15.21 0.00 34.33 3.20
5768 5997 4.269183 TGACACCAACAACAACTGAAGAT 58.731 39.130 0.00 0.00 0.00 2.40
5810 6039 7.646314 TGCAAAATTTTAAACAATCACCATGG 58.354 30.769 11.19 11.19 0.00 3.66
5811 6040 7.284034 TGCAAAATTTTAAACAATCACCATGGT 59.716 29.630 13.00 13.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.262774 CTAGCTGGTGGGCCAAGGAG 62.263 65.000 8.40 5.47 45.51 3.69
1 2 2.204074 TAGCTGGTGGGCCAAGGA 60.204 61.111 8.40 0.00 45.51 3.36
2 3 1.639635 ATCTAGCTGGTGGGCCAAGG 61.640 60.000 8.40 2.06 45.51 3.61
4 5 1.590591 TTATCTAGCTGGTGGGCCAA 58.409 50.000 8.40 0.00 45.51 4.52
5 6 1.590591 TTTATCTAGCTGGTGGGCCA 58.409 50.000 0.00 0.00 43.73 5.36
6 7 2.553247 GGATTTATCTAGCTGGTGGGCC 60.553 54.545 0.00 0.00 0.00 5.80
8 9 2.289694 CGGGATTTATCTAGCTGGTGGG 60.290 54.545 0.00 0.00 0.00 4.61
9 10 2.289694 CCGGGATTTATCTAGCTGGTGG 60.290 54.545 0.00 0.00 0.00 4.61
11 12 2.690840 ACCGGGATTTATCTAGCTGGT 58.309 47.619 6.32 0.00 0.00 4.00
12 13 3.071023 TCAACCGGGATTTATCTAGCTGG 59.929 47.826 6.32 0.00 0.00 4.85
15 16 6.635030 AAAATCAACCGGGATTTATCTAGC 57.365 37.500 16.16 0.00 44.47 3.42
16 17 6.918022 GCAAAAATCAACCGGGATTTATCTAG 59.082 38.462 16.16 8.18 44.47 2.43
17 18 6.183360 GGCAAAAATCAACCGGGATTTATCTA 60.183 38.462 16.16 0.00 44.47 1.98
18 19 5.395214 GGCAAAAATCAACCGGGATTTATCT 60.395 40.000 16.16 2.24 44.47 1.98
19 20 4.808895 GGCAAAAATCAACCGGGATTTATC 59.191 41.667 16.16 9.80 44.47 1.75
20 21 4.223923 TGGCAAAAATCAACCGGGATTTAT 59.776 37.500 16.16 6.93 44.47 1.40
21 22 3.578716 TGGCAAAAATCAACCGGGATTTA 59.421 39.130 16.16 1.65 44.47 1.40
22 23 2.370189 TGGCAAAAATCAACCGGGATTT 59.630 40.909 6.32 9.68 46.54 2.17
23 24 1.974236 TGGCAAAAATCAACCGGGATT 59.026 42.857 6.32 2.83 39.11 3.01
24 25 1.550072 CTGGCAAAAATCAACCGGGAT 59.450 47.619 6.32 0.00 0.00 3.85
25 26 0.965439 CTGGCAAAAATCAACCGGGA 59.035 50.000 6.32 0.00 0.00 5.14
26 27 0.037419 CCTGGCAAAAATCAACCGGG 60.037 55.000 6.32 0.00 42.21 5.73
27 28 0.037419 CCCTGGCAAAAATCAACCGG 60.037 55.000 0.00 0.00 0.00 5.28
28 29 0.678950 ACCCTGGCAAAAATCAACCG 59.321 50.000 0.00 0.00 0.00 4.44
29 30 2.877786 CAAACCCTGGCAAAAATCAACC 59.122 45.455 0.00 0.00 0.00 3.77
30 31 3.802866 TCAAACCCTGGCAAAAATCAAC 58.197 40.909 0.00 0.00 0.00 3.18
31 32 4.703379 ATCAAACCCTGGCAAAAATCAA 57.297 36.364 0.00 0.00 0.00 2.57
32 33 4.703379 AATCAAACCCTGGCAAAAATCA 57.297 36.364 0.00 0.00 0.00 2.57
33 34 6.368791 GTCTAAATCAAACCCTGGCAAAAATC 59.631 38.462 0.00 0.00 0.00 2.17
34 35 6.230472 GTCTAAATCAAACCCTGGCAAAAAT 58.770 36.000 0.00 0.00 0.00 1.82
35 36 5.454045 GGTCTAAATCAAACCCTGGCAAAAA 60.454 40.000 0.00 0.00 0.00 1.94
36 37 4.039852 GGTCTAAATCAAACCCTGGCAAAA 59.960 41.667 0.00 0.00 0.00 2.44
37 38 3.576550 GGTCTAAATCAAACCCTGGCAAA 59.423 43.478 0.00 0.00 0.00 3.68
38 39 3.161866 GGTCTAAATCAAACCCTGGCAA 58.838 45.455 0.00 0.00 0.00 4.52
39 40 2.802719 GGTCTAAATCAAACCCTGGCA 58.197 47.619 0.00 0.00 0.00 4.92
40 41 1.743394 CGGTCTAAATCAAACCCTGGC 59.257 52.381 0.00 0.00 0.00 4.85
41 42 2.365582 CCGGTCTAAATCAAACCCTGG 58.634 52.381 0.00 0.00 0.00 4.45
42 43 2.026636 TCCCGGTCTAAATCAAACCCTG 60.027 50.000 0.00 0.00 0.00 4.45
43 44 2.271777 TCCCGGTCTAAATCAAACCCT 58.728 47.619 0.00 0.00 0.00 4.34
44 45 2.793288 TCCCGGTCTAAATCAAACCC 57.207 50.000 0.00 0.00 0.00 4.11
45 46 5.187687 TGTAATCCCGGTCTAAATCAAACC 58.812 41.667 0.00 0.00 0.00 3.27
46 47 6.937436 ATGTAATCCCGGTCTAAATCAAAC 57.063 37.500 0.00 0.00 0.00 2.93
47 48 7.798071 ACTATGTAATCCCGGTCTAAATCAAA 58.202 34.615 0.00 0.00 0.00 2.69
48 49 7.369551 ACTATGTAATCCCGGTCTAAATCAA 57.630 36.000 0.00 0.00 0.00 2.57
49 50 6.989155 ACTATGTAATCCCGGTCTAAATCA 57.011 37.500 0.00 0.00 0.00 2.57
50 51 7.439381 TGAACTATGTAATCCCGGTCTAAATC 58.561 38.462 0.00 0.00 0.00 2.17
51 52 7.369551 TGAACTATGTAATCCCGGTCTAAAT 57.630 36.000 0.00 0.00 0.00 1.40
52 53 6.795144 TGAACTATGTAATCCCGGTCTAAA 57.205 37.500 0.00 0.00 0.00 1.85
53 54 6.183360 CCTTGAACTATGTAATCCCGGTCTAA 60.183 42.308 0.00 0.00 0.00 2.10
54 55 5.303589 CCTTGAACTATGTAATCCCGGTCTA 59.696 44.000 0.00 0.00 0.00 2.59
55 56 4.101119 CCTTGAACTATGTAATCCCGGTCT 59.899 45.833 0.00 0.00 0.00 3.85
56 57 4.141779 ACCTTGAACTATGTAATCCCGGTC 60.142 45.833 0.00 0.00 0.00 4.79
57 58 3.778629 ACCTTGAACTATGTAATCCCGGT 59.221 43.478 0.00 0.00 0.00 5.28
58 59 4.127171 CACCTTGAACTATGTAATCCCGG 58.873 47.826 0.00 0.00 0.00 5.73
59 60 3.560068 GCACCTTGAACTATGTAATCCCG 59.440 47.826 0.00 0.00 0.00 5.14
60 61 4.523083 TGCACCTTGAACTATGTAATCCC 58.477 43.478 0.00 0.00 0.00 3.85
61 62 6.511767 CGATTGCACCTTGAACTATGTAATCC 60.512 42.308 7.88 0.00 39.55 3.01
62 63 6.257849 TCGATTGCACCTTGAACTATGTAATC 59.742 38.462 0.00 0.00 39.41 1.75
63 64 6.037172 GTCGATTGCACCTTGAACTATGTAAT 59.963 38.462 0.00 0.00 31.20 1.89
64 65 5.350365 GTCGATTGCACCTTGAACTATGTAA 59.650 40.000 0.00 0.00 0.00 2.41
65 66 4.868171 GTCGATTGCACCTTGAACTATGTA 59.132 41.667 0.00 0.00 0.00 2.29
66 67 3.684788 GTCGATTGCACCTTGAACTATGT 59.315 43.478 0.00 0.00 0.00 2.29
67 68 3.063997 GGTCGATTGCACCTTGAACTATG 59.936 47.826 0.00 0.00 0.00 2.23
68 69 3.270877 GGTCGATTGCACCTTGAACTAT 58.729 45.455 0.00 0.00 0.00 2.12
69 70 2.695359 GGTCGATTGCACCTTGAACTA 58.305 47.619 0.00 0.00 0.00 2.24
70 71 1.523758 GGTCGATTGCACCTTGAACT 58.476 50.000 0.00 0.00 0.00 3.01
71 72 0.165944 CGGTCGATTGCACCTTGAAC 59.834 55.000 0.00 0.00 0.00 3.18
72 73 0.953471 CCGGTCGATTGCACCTTGAA 60.953 55.000 0.00 0.00 0.00 2.69
73 74 1.375396 CCGGTCGATTGCACCTTGA 60.375 57.895 0.00 0.00 0.00 3.02
74 75 2.398554 CCCGGTCGATTGCACCTTG 61.399 63.158 0.00 0.00 0.00 3.61
75 76 1.910580 ATCCCGGTCGATTGCACCTT 61.911 55.000 0.00 0.00 0.00 3.50
76 77 1.910580 AATCCCGGTCGATTGCACCT 61.911 55.000 0.00 0.00 31.19 4.00
77 78 1.029947 AAATCCCGGTCGATTGCACC 61.030 55.000 6.70 0.00 32.75 5.01
78 79 0.808755 AAAATCCCGGTCGATTGCAC 59.191 50.000 6.70 0.00 32.75 4.57
79 80 0.808125 CAAAATCCCGGTCGATTGCA 59.192 50.000 6.70 0.00 32.75 4.08
80 81 1.091537 TCAAAATCCCGGTCGATTGC 58.908 50.000 6.70 0.00 32.75 3.56
81 82 2.356135 AGTCAAAATCCCGGTCGATTG 58.644 47.619 6.70 4.23 32.75 2.67
82 83 2.747446 CAAGTCAAAATCCCGGTCGATT 59.253 45.455 0.00 0.00 33.84 3.34
83 84 2.356135 CAAGTCAAAATCCCGGTCGAT 58.644 47.619 0.00 0.00 0.00 3.59
84 85 1.609580 CCAAGTCAAAATCCCGGTCGA 60.610 52.381 0.00 0.00 0.00 4.20
85 86 0.802494 CCAAGTCAAAATCCCGGTCG 59.198 55.000 0.00 0.00 0.00 4.79
86 87 1.173913 CCCAAGTCAAAATCCCGGTC 58.826 55.000 0.00 0.00 0.00 4.79
87 88 0.251608 CCCCAAGTCAAAATCCCGGT 60.252 55.000 0.00 0.00 0.00 5.28
88 89 0.970427 CCCCCAAGTCAAAATCCCGG 60.970 60.000 0.00 0.00 0.00 5.73
89 90 0.251608 ACCCCCAAGTCAAAATCCCG 60.252 55.000 0.00 0.00 0.00 5.14
90 91 1.899814 GAACCCCCAAGTCAAAATCCC 59.100 52.381 0.00 0.00 0.00 3.85
91 92 2.604139 TGAACCCCCAAGTCAAAATCC 58.396 47.619 0.00 0.00 0.00 3.01
92 93 4.890158 AATGAACCCCCAAGTCAAAATC 57.110 40.909 0.00 0.00 0.00 2.17
93 94 4.262420 CGAAATGAACCCCCAAGTCAAAAT 60.262 41.667 0.00 0.00 0.00 1.82
94 95 3.068873 CGAAATGAACCCCCAAGTCAAAA 59.931 43.478 0.00 0.00 0.00 2.44
95 96 2.625790 CGAAATGAACCCCCAAGTCAAA 59.374 45.455 0.00 0.00 0.00 2.69
96 97 2.235016 CGAAATGAACCCCCAAGTCAA 58.765 47.619 0.00 0.00 0.00 3.18
97 98 1.144093 ACGAAATGAACCCCCAAGTCA 59.856 47.619 0.00 0.00 0.00 3.41
98 99 1.810755 GACGAAATGAACCCCCAAGTC 59.189 52.381 0.00 0.00 0.00 3.01
99 100 1.880646 CGACGAAATGAACCCCCAAGT 60.881 52.381 0.00 0.00 0.00 3.16
100 101 0.802494 CGACGAAATGAACCCCCAAG 59.198 55.000 0.00 0.00 0.00 3.61
101 102 0.397187 TCGACGAAATGAACCCCCAA 59.603 50.000 0.00 0.00 0.00 4.12
102 103 0.397187 TTCGACGAAATGAACCCCCA 59.603 50.000 8.05 0.00 0.00 4.96
103 104 0.800631 GTTCGACGAAATGAACCCCC 59.199 55.000 12.67 0.00 38.79 5.40
107 108 1.804601 AGGGGTTCGACGAAATGAAC 58.195 50.000 12.67 0.00 42.87 3.18
108 109 2.299582 TGTAGGGGTTCGACGAAATGAA 59.700 45.455 12.67 0.00 0.00 2.57
109 110 1.894466 TGTAGGGGTTCGACGAAATGA 59.106 47.619 12.67 0.00 0.00 2.57
110 111 2.373540 TGTAGGGGTTCGACGAAATG 57.626 50.000 12.67 0.00 0.00 2.32
111 112 3.405823 TTTGTAGGGGTTCGACGAAAT 57.594 42.857 12.67 1.70 0.00 2.17
112 113 2.906691 TTTGTAGGGGTTCGACGAAA 57.093 45.000 12.67 0.00 0.00 3.46
113 114 3.244146 TGAATTTGTAGGGGTTCGACGAA 60.244 43.478 6.10 6.10 0.00 3.85
114 115 2.299582 TGAATTTGTAGGGGTTCGACGA 59.700 45.455 0.00 0.00 0.00 4.20
115 116 2.690786 TGAATTTGTAGGGGTTCGACG 58.309 47.619 0.00 0.00 0.00 5.12
116 117 3.439129 CCTTGAATTTGTAGGGGTTCGAC 59.561 47.826 0.00 0.00 0.00 4.20
117 118 3.073356 ACCTTGAATTTGTAGGGGTTCGA 59.927 43.478 0.00 0.00 33.22 3.71
118 119 3.418047 ACCTTGAATTTGTAGGGGTTCG 58.582 45.455 0.00 0.00 33.22 3.95
119 120 5.801531 AAACCTTGAATTTGTAGGGGTTC 57.198 39.130 0.00 0.00 34.97 3.62
120 121 7.678207 TTTAAACCTTGAATTTGTAGGGGTT 57.322 32.000 0.00 0.00 37.20 4.11
121 122 7.678207 TTTTAAACCTTGAATTTGTAGGGGT 57.322 32.000 0.00 0.00 33.22 4.95
122 123 7.606073 CCATTTTAAACCTTGAATTTGTAGGGG 59.394 37.037 0.00 0.00 33.22 4.79
123 124 8.371699 TCCATTTTAAACCTTGAATTTGTAGGG 58.628 33.333 0.00 0.00 33.22 3.53
124 125 9.203421 GTCCATTTTAAACCTTGAATTTGTAGG 57.797 33.333 0.00 0.00 35.14 3.18
125 126 9.981114 AGTCCATTTTAAACCTTGAATTTGTAG 57.019 29.630 0.00 0.00 0.00 2.74
127 128 9.679661 AAAGTCCATTTTAAACCTTGAATTTGT 57.320 25.926 0.00 0.00 0.00 2.83
131 132 9.337396 GGAAAAAGTCCATTTTAAACCTTGAAT 57.663 29.630 0.00 0.00 46.97 2.57
132 133 8.725405 GGAAAAAGTCCATTTTAAACCTTGAA 57.275 30.769 0.00 0.00 46.97 2.69
158 159 0.981277 ACCGTAATCACCCCAGGAGG 60.981 60.000 0.00 0.00 0.00 4.30
159 160 0.464452 GACCGTAATCACCCCAGGAG 59.536 60.000 0.00 0.00 0.00 3.69
160 161 0.252330 TGACCGTAATCACCCCAGGA 60.252 55.000 0.00 0.00 0.00 3.86
161 162 0.107848 GTGACCGTAATCACCCCAGG 60.108 60.000 1.31 0.00 42.74 4.45
162 163 0.459585 CGTGACCGTAATCACCCCAG 60.460 60.000 6.23 0.00 45.23 4.45
163 164 0.899253 TCGTGACCGTAATCACCCCA 60.899 55.000 6.23 0.00 45.23 4.96
164 165 0.247185 TTCGTGACCGTAATCACCCC 59.753 55.000 6.23 0.00 45.23 4.95
165 166 1.636988 CTTCGTGACCGTAATCACCC 58.363 55.000 6.23 0.00 45.23 4.61
169 170 1.392510 GTTGGCTTCGTGACCGTAATC 59.607 52.381 0.00 0.00 35.01 1.75
203 204 2.804647 CCAAACGTCCAAAAACCTGTC 58.195 47.619 0.00 0.00 0.00 3.51
241 242 4.129737 ATCGTCGTCGCCCAGTGG 62.130 66.667 0.63 0.63 36.96 4.00
242 243 2.579787 GATCGTCGTCGCCCAGTG 60.580 66.667 0.00 0.00 36.96 3.66
243 244 3.823330 GGATCGTCGTCGCCCAGT 61.823 66.667 0.00 0.00 36.96 4.00
244 245 4.907034 CGGATCGTCGTCGCCCAG 62.907 72.222 11.88 3.80 36.96 4.45
376 395 3.966543 GAGTGGTGGGGTGGGGTG 61.967 72.222 0.00 0.00 0.00 4.61
395 414 0.445436 GCTCAACTCAACCATCTGCG 59.555 55.000 0.00 0.00 0.00 5.18
401 420 0.106769 TGCTTGGCTCAACTCAACCA 60.107 50.000 0.00 0.00 0.00 3.67
414 433 4.034258 CTGCGGTGCTGTGCTTGG 62.034 66.667 0.00 0.00 0.00 3.61
448 467 4.094887 CGCTCCAAATGCACTATACTTTGT 59.905 41.667 7.28 0.00 0.00 2.83
451 470 2.614057 GCGCTCCAAATGCACTATACTT 59.386 45.455 0.00 0.00 0.00 2.24
452 471 2.213499 GCGCTCCAAATGCACTATACT 58.787 47.619 0.00 0.00 0.00 2.12
453 472 1.070577 CGCGCTCCAAATGCACTATAC 60.071 52.381 5.56 0.00 0.00 1.47
454 473 1.217001 CGCGCTCCAAATGCACTATA 58.783 50.000 5.56 0.00 0.00 1.31
480 510 4.682334 TAGCGGACCGGACCACCA 62.682 66.667 22.85 0.00 35.59 4.17
490 520 1.811679 GCCAACAGAGCTAGCGGAC 60.812 63.158 9.55 5.31 0.00 4.79
491 521 2.579201 GCCAACAGAGCTAGCGGA 59.421 61.111 9.55 0.00 0.00 5.54
492 522 2.512515 GGCCAACAGAGCTAGCGG 60.513 66.667 9.55 4.28 0.00 5.52
493 523 2.887568 CGGCCAACAGAGCTAGCG 60.888 66.667 9.55 0.00 0.00 4.26
494 524 2.512515 CCGGCCAACAGAGCTAGC 60.513 66.667 6.62 6.62 0.00 3.42
523 553 0.320946 TTCATTCCGGACGGTTGACC 60.321 55.000 1.83 0.00 36.47 4.02
524 554 1.664151 GATTCATTCCGGACGGTTGAC 59.336 52.381 1.83 1.97 36.47 3.18
525 555 1.276705 TGATTCATTCCGGACGGTTGA 59.723 47.619 1.83 11.93 36.47 3.18
526 556 1.396996 GTGATTCATTCCGGACGGTTG 59.603 52.381 1.83 9.88 36.47 3.77
527 557 1.734163 GTGATTCATTCCGGACGGTT 58.266 50.000 1.83 0.00 36.47 4.44
528 558 0.459585 CGTGATTCATTCCGGACGGT 60.460 55.000 1.83 0.00 36.47 4.83
529 559 1.151777 CCGTGATTCATTCCGGACGG 61.152 60.000 1.83 8.40 39.27 4.79
530 560 0.179121 TCCGTGATTCATTCCGGACG 60.179 55.000 1.83 1.56 40.22 4.79
531 561 1.571919 CTCCGTGATTCATTCCGGAC 58.428 55.000 1.83 0.00 40.22 4.79
532 562 0.179084 GCTCCGTGATTCATTCCGGA 60.179 55.000 14.09 14.09 41.74 5.14
533 563 1.160329 GGCTCCGTGATTCATTCCGG 61.160 60.000 7.65 7.65 38.67 5.14
534 564 1.160329 GGGCTCCGTGATTCATTCCG 61.160 60.000 0.00 0.00 0.00 4.30
535 565 1.160329 CGGGCTCCGTGATTCATTCC 61.160 60.000 5.56 0.00 42.73 3.01
536 566 2.311294 CGGGCTCCGTGATTCATTC 58.689 57.895 5.56 0.00 42.73 2.67
537 567 4.540153 CGGGCTCCGTGATTCATT 57.460 55.556 5.56 0.00 42.73 2.57
574 604 1.202245 TGTTTCGTTGGCTGTTTGCTC 60.202 47.619 0.00 0.00 42.39 4.26
593 624 4.443598 GCTGATCTACTACCCCTCCTTTTG 60.444 50.000 0.00 0.00 0.00 2.44
595 626 3.310193 GCTGATCTACTACCCCTCCTTT 58.690 50.000 0.00 0.00 0.00 3.11
596 627 2.247635 TGCTGATCTACTACCCCTCCTT 59.752 50.000 0.00 0.00 0.00 3.36
597 628 1.860240 TGCTGATCTACTACCCCTCCT 59.140 52.381 0.00 0.00 0.00 3.69
598 629 2.243810 CTGCTGATCTACTACCCCTCC 58.756 57.143 0.00 0.00 0.00 4.30
599 630 1.616374 GCTGCTGATCTACTACCCCTC 59.384 57.143 0.00 0.00 0.00 4.30
600 631 1.710816 GCTGCTGATCTACTACCCCT 58.289 55.000 0.00 0.00 0.00 4.79
601 632 0.315568 CGCTGCTGATCTACTACCCC 59.684 60.000 0.00 0.00 0.00 4.95
602 633 0.319125 GCGCTGCTGATCTACTACCC 60.319 60.000 0.00 0.00 0.00 3.69
603 634 0.385751 TGCGCTGCTGATCTACTACC 59.614 55.000 9.73 0.00 0.00 3.18
687 723 0.253394 AAGGAAGGGAAGGGGAGGAG 60.253 60.000 0.00 0.00 0.00 3.69
689 725 1.282653 GGAAGGAAGGGAAGGGGAGG 61.283 65.000 0.00 0.00 0.00 4.30
690 726 0.253394 AGGAAGGAAGGGAAGGGGAG 60.253 60.000 0.00 0.00 0.00 4.30
691 727 0.253207 GAGGAAGGAAGGGAAGGGGA 60.253 60.000 0.00 0.00 0.00 4.81
692 728 1.627297 CGAGGAAGGAAGGGAAGGGG 61.627 65.000 0.00 0.00 0.00 4.79
697 733 2.036731 TCGCGAGGAAGGAAGGGA 59.963 61.111 3.71 0.00 0.00 4.20
700 736 2.881352 GCGTCGCGAGGAAGGAAG 60.881 66.667 31.02 1.39 0.00 3.46
716 752 4.389576 CAAGACGCGTTGCCTGGC 62.390 66.667 15.53 12.87 0.00 4.85
720 756 3.595108 GAAGCCAAGACGCGTTGCC 62.595 63.158 15.53 0.00 0.00 4.52
721 757 2.127232 GAAGCCAAGACGCGTTGC 60.127 61.111 15.53 14.39 0.00 4.17
775 811 1.706995 TTGTTTACTGGGTCCGGCCA 61.707 55.000 15.49 8.75 39.65 5.36
842 879 1.903404 GTGCTGGGTTGGGACTTGG 60.903 63.158 0.00 0.00 0.00 3.61
843 880 0.754957 TTGTGCTGGGTTGGGACTTG 60.755 55.000 0.00 0.00 0.00 3.16
844 881 0.755327 GTTGTGCTGGGTTGGGACTT 60.755 55.000 0.00 0.00 0.00 3.01
845 882 1.152756 GTTGTGCTGGGTTGGGACT 60.153 57.895 0.00 0.00 0.00 3.85
846 883 1.040339 TTGTTGTGCTGGGTTGGGAC 61.040 55.000 0.00 0.00 0.00 4.46
847 884 0.105760 ATTGTTGTGCTGGGTTGGGA 60.106 50.000 0.00 0.00 0.00 4.37
848 885 1.626686 TATTGTTGTGCTGGGTTGGG 58.373 50.000 0.00 0.00 0.00 4.12
849 886 2.606795 CGTTATTGTTGTGCTGGGTTGG 60.607 50.000 0.00 0.00 0.00 3.77
851 888 1.000717 GCGTTATTGTTGTGCTGGGTT 60.001 47.619 0.00 0.00 0.00 4.11
852 889 0.596082 GCGTTATTGTTGTGCTGGGT 59.404 50.000 0.00 0.00 0.00 4.51
853 890 0.595588 TGCGTTATTGTTGTGCTGGG 59.404 50.000 0.00 0.00 0.00 4.45
854 891 1.967762 CTGCGTTATTGTTGTGCTGG 58.032 50.000 0.00 0.00 0.00 4.85
893 937 4.332637 GCTGGTGCCGCAGTTGTG 62.333 66.667 0.00 0.00 0.00 3.33
906 955 2.553765 ATTCTGCTCTGGCTGGCTGG 62.554 60.000 8.19 1.10 39.59 4.85
907 956 0.179702 TATTCTGCTCTGGCTGGCTG 59.820 55.000 2.00 1.75 39.59 4.85
908 957 1.072015 GATATTCTGCTCTGGCTGGCT 59.928 52.381 2.00 0.00 39.59 4.75
909 958 1.521580 GATATTCTGCTCTGGCTGGC 58.478 55.000 0.00 0.00 39.59 4.85
1024 1086 2.851071 CGGCGAGGAGGATGAGGAC 61.851 68.421 0.00 0.00 0.00 3.85
1080 1151 4.077188 GTCTGGACGTTGCGCTGC 62.077 66.667 9.73 0.00 0.00 5.25
1081 1152 3.414700 GGTCTGGACGTTGCGCTG 61.415 66.667 9.73 0.34 0.00 5.18
1213 1284 1.682684 GCTTCGTGGAGGAGGAGGA 60.683 63.158 0.00 0.00 0.00 3.71
1214 1285 2.896443 GCTTCGTGGAGGAGGAGG 59.104 66.667 0.00 0.00 0.00 4.30
1215 1286 2.492090 CGCTTCGTGGAGGAGGAG 59.508 66.667 0.00 0.00 0.00 3.69
1860 1949 2.586792 CTTCCTCTTCCTGGCGGG 59.413 66.667 5.83 5.83 0.00 6.13
1962 2051 2.607750 GCTGGTGGAGGAGGTGGA 60.608 66.667 0.00 0.00 0.00 4.02
2034 2123 2.258748 CTCCCTTCTTTCCTCCGGGC 62.259 65.000 0.00 0.00 34.84 6.13
2073 2162 2.198304 CTCCCTTCTTTCCACCGGGG 62.198 65.000 6.32 0.00 35.58 5.73
2082 2171 3.842570 GGAGGCCCTCCCTTCTTT 58.157 61.111 19.95 0.00 46.60 2.52
2377 2470 3.555956 GCAATCAGTAATGACCGGTACTG 59.444 47.826 23.61 23.61 45.68 2.74
2419 2521 1.679153 TGACTCACTGTTCGTGCTGTA 59.321 47.619 0.00 0.00 43.46 2.74
2424 2526 1.501169 TGCATGACTCACTGTTCGTG 58.499 50.000 0.00 0.00 45.18 4.35
2444 2546 1.075374 CAAGGTTCAGGGTTCCATCCA 59.925 52.381 0.00 0.00 0.00 3.41
2445 2547 1.354368 TCAAGGTTCAGGGTTCCATCC 59.646 52.381 0.00 0.00 0.00 3.51
2446 2548 2.437413 GTCAAGGTTCAGGGTTCCATC 58.563 52.381 0.00 0.00 0.00 3.51
2447 2549 1.271379 CGTCAAGGTTCAGGGTTCCAT 60.271 52.381 0.00 0.00 0.00 3.41
2466 2568 1.372087 GCCTGATGGTCCTGCTTTCG 61.372 60.000 0.00 0.00 35.27 3.46
2472 2574 2.124403 GCCTGCCTGATGGTCCTG 60.124 66.667 0.00 0.00 35.27 3.86
2483 2585 0.960364 TTTCTCGGTTCATGCCTGCC 60.960 55.000 0.00 0.00 0.00 4.85
2500 2631 5.497474 AGAACGTAATGCTAGTGGGATTTT 58.503 37.500 0.00 0.00 37.22 1.82
2546 2677 2.898705 CTGCAAGTAACTCAGCTAGGG 58.101 52.381 0.00 0.00 0.00 3.53
2547 2678 2.275318 GCTGCAAGTAACTCAGCTAGG 58.725 52.381 6.24 0.00 46.93 3.02
2552 2683 4.637534 ACCATTATGCTGCAAGTAACTCAG 59.362 41.667 6.36 0.00 35.30 3.35
2553 2684 4.588899 ACCATTATGCTGCAAGTAACTCA 58.411 39.130 6.36 0.00 35.30 3.41
2555 2686 4.576463 GCTACCATTATGCTGCAAGTAACT 59.424 41.667 6.36 0.00 35.30 2.24
2557 2688 4.576053 CAGCTACCATTATGCTGCAAGTAA 59.424 41.667 6.36 1.86 45.76 2.24
2558 2689 4.129380 CAGCTACCATTATGCTGCAAGTA 58.871 43.478 6.36 3.33 45.76 2.24
2559 2690 2.947652 CAGCTACCATTATGCTGCAAGT 59.052 45.455 6.36 2.25 45.76 3.16
2571 2705 2.179427 TCTGCACACTACAGCTACCAT 58.821 47.619 0.00 0.00 35.04 3.55
2573 2707 2.737252 GTTTCTGCACACTACAGCTACC 59.263 50.000 0.00 0.00 35.04 3.18
2588 2722 2.536329 CGCGCATCATCTTCAGTTTCTG 60.536 50.000 8.75 0.00 0.00 3.02
2616 2750 2.353109 GCATTCAGGGCCTTTTCAGTTC 60.353 50.000 1.32 0.00 0.00 3.01
2759 2912 3.496131 CGTGATTTGGGTCGGGCG 61.496 66.667 0.00 0.00 0.00 6.13
2764 2918 0.893727 AAGGCACCGTGATTTGGGTC 60.894 55.000 1.65 0.00 33.23 4.46
2819 2973 2.254546 TATCGTGGCTTGCCAATAGG 57.745 50.000 16.55 6.43 38.23 2.57
2860 3014 1.429148 GCCCATACGCAAGAGAACGG 61.429 60.000 0.00 0.00 43.62 4.44
2894 3056 2.023673 TCGTATACCCGTTCCACGAAT 58.976 47.619 0.00 0.00 46.05 3.34
2923 3094 1.259544 CGTTCAACGAAAAGCACGCC 61.260 55.000 3.01 0.00 46.05 5.68
2951 3122 8.038944 AGATAGCAAAGCAAATGTGAATTGAAT 58.961 29.630 5.52 0.00 0.00 2.57
2956 3127 6.604795 AGGTAGATAGCAAAGCAAATGTGAAT 59.395 34.615 0.00 0.00 0.00 2.57
2975 3146 3.576982 ACGGTTGATTCTGTCAAGGTAGA 59.423 43.478 0.00 0.00 46.99 2.59
2977 3148 5.670792 ATACGGTTGATTCTGTCAAGGTA 57.329 39.130 0.00 0.00 46.99 3.08
3001 3172 9.793252 AGCTAAACAATAGCACAAAATCATAAG 57.207 29.630 9.85 0.00 42.68 1.73
3007 3178 8.550376 CAAACAAGCTAAACAATAGCACAAAAT 58.450 29.630 9.85 0.00 42.68 1.82
3008 3179 7.761704 TCAAACAAGCTAAACAATAGCACAAAA 59.238 29.630 9.85 0.00 42.68 2.44
3014 3185 5.228012 GCGATCAAACAAGCTAAACAATAGC 59.772 40.000 0.00 0.00 40.67 2.97
3018 3189 3.002862 ACGCGATCAAACAAGCTAAACAA 59.997 39.130 15.93 0.00 0.00 2.83
3021 3192 4.994220 TTACGCGATCAAACAAGCTAAA 57.006 36.364 15.93 0.00 0.00 1.85
3041 3212 1.212935 CCGTCCCCATCCAGATTCTTT 59.787 52.381 0.00 0.00 0.00 2.52
3107 3279 2.045926 AAGGCGTCCACATCCTGC 60.046 61.111 0.00 0.00 0.00 4.85
3129 3301 0.673644 GTGGGTGACATCTTGACCGG 60.674 60.000 0.00 0.00 0.00 5.28
3141 3313 1.070134 CTGACGGAGAAAAGTGGGTGA 59.930 52.381 0.00 0.00 0.00 4.02
3198 3371 9.253832 CTAGGTATGATTCTCTTATGACTGGAT 57.746 37.037 0.00 0.00 0.00 3.41
3220 3393 4.280929 TCATGTATCCAATCGGTCACTAGG 59.719 45.833 0.00 0.00 0.00 3.02
3256 3466 4.932200 CCCAGTTTCTGAACACTAGCTTAG 59.068 45.833 0.00 0.00 38.26 2.18
3259 3469 2.039084 CCCCAGTTTCTGAACACTAGCT 59.961 50.000 0.00 0.00 38.26 3.32
3287 3502 3.003275 TCGATCACACAAAGCTGGAAAAC 59.997 43.478 0.00 0.00 0.00 2.43
3289 3504 2.844946 TCGATCACACAAAGCTGGAAA 58.155 42.857 0.00 0.00 0.00 3.13
3290 3505 2.542020 TCGATCACACAAAGCTGGAA 57.458 45.000 0.00 0.00 0.00 3.53
3291 3506 2.768253 ATCGATCACACAAAGCTGGA 57.232 45.000 0.00 0.00 0.00 3.86
3293 3508 3.681417 TCTGAATCGATCACACAAAGCTG 59.319 43.478 0.00 0.00 33.47 4.24
3294 3509 3.930336 TCTGAATCGATCACACAAAGCT 58.070 40.909 0.00 0.00 33.47 3.74
3295 3510 4.398247 GTTCTGAATCGATCACACAAAGC 58.602 43.478 0.00 0.00 33.47 3.51
3296 3511 4.150627 ACGTTCTGAATCGATCACACAAAG 59.849 41.667 15.60 2.24 33.47 2.77
3297 3512 4.055360 ACGTTCTGAATCGATCACACAAA 58.945 39.130 15.60 0.00 33.47 2.83
3298 3513 3.649073 ACGTTCTGAATCGATCACACAA 58.351 40.909 15.60 0.00 33.47 3.33
3464 3685 4.262981 GGCTCAATCAGGAATATCTGCTCT 60.263 45.833 0.00 0.00 34.91 4.09
3743 3964 5.046807 ACCGTAGTTTACCTTGAATAGCAGT 60.047 40.000 0.00 0.00 0.00 4.40
3803 4024 1.523258 CTGGCTCGCCATCTCCAAG 60.523 63.158 11.59 0.00 46.15 3.61
3824 4045 0.779997 ACAGCCCCTTTGTCCTCAAT 59.220 50.000 0.00 0.00 33.32 2.57
3825 4046 0.555769 AACAGCCCCTTTGTCCTCAA 59.444 50.000 0.00 0.00 0.00 3.02
3833 4054 3.895656 GGAGTTTAAAGAACAGCCCCTTT 59.104 43.478 0.00 0.00 36.64 3.11
3842 4063 2.666994 CGCCTCGAGGAGTTTAAAGAAC 59.333 50.000 35.69 11.27 37.39 3.01
3854 4075 3.997064 CTTGAGCACCGCCTCGAGG 62.997 68.421 27.83 27.83 38.95 4.63
4034 4255 2.612200 GCTGTAGTTGCGGTTGACA 58.388 52.632 0.00 0.00 0.00 3.58
4053 4274 4.874977 GCTACCAGAGCGGCGGAC 62.875 72.222 9.78 0.00 42.62 4.79
4074 4295 1.250328 CCAACAATGCTGCTCTTGGA 58.750 50.000 16.13 0.00 34.41 3.53
4086 4307 1.617850 TGCTGAAATTCCGCCAACAAT 59.382 42.857 6.92 0.00 0.00 2.71
4088 4309 0.597568 CTGCTGAAATTCCGCCAACA 59.402 50.000 6.92 0.00 0.00 3.33
4090 4311 0.895100 AGCTGCTGAAATTCCGCCAA 60.895 50.000 0.00 0.00 0.00 4.52
4279 4500 0.034767 CAGGAGCTTCTTGATGCCCA 60.035 55.000 0.00 0.00 0.00 5.36
4397 4618 0.250234 TCCGCTGAACCAGATCAAGG 59.750 55.000 0.00 0.00 32.44 3.61
4457 4678 0.842030 ACAACTGGAGGGGATGAGCA 60.842 55.000 0.00 0.00 0.00 4.26
4460 4681 0.613260 CGAACAACTGGAGGGGATGA 59.387 55.000 0.00 0.00 0.00 2.92
4691 4915 0.593128 CTTCTTCTGGTGGCGGTTTG 59.407 55.000 0.00 0.00 0.00 2.93
4787 5011 4.564782 TTCCTCATCACTGCTTGAATCT 57.435 40.909 0.00 0.00 37.92 2.40
4796 5020 7.674120 TCCATACATTCTATTCCTCATCACTG 58.326 38.462 0.00 0.00 0.00 3.66
4900 5124 9.325198 AGAAAAGAACCAACATAAACAATTTCC 57.675 29.630 0.00 0.00 0.00 3.13
4911 5135 5.449553 AGAACTGGAGAAAAGAACCAACAT 58.550 37.500 0.00 0.00 33.14 2.71
4940 5167 0.612744 TGTTGCCGACATGGATCTCA 59.387 50.000 0.00 0.00 42.00 3.27
4941 5168 1.293924 CTGTTGCCGACATGGATCTC 58.706 55.000 0.00 0.00 42.00 2.75
4942 5169 0.615331 ACTGTTGCCGACATGGATCT 59.385 50.000 0.00 0.00 42.00 2.75
5026 5253 9.914834 AATGGTTACCAGTTAGCTAAAATATCA 57.085 29.630 10.74 0.75 36.75 2.15
5474 5702 1.576356 GAGATTTAGCCCGTCTGCTG 58.424 55.000 2.00 0.00 42.77 4.41
5614 5843 4.079253 TGCCCTTGTTACTTTTCTCATCC 58.921 43.478 0.00 0.00 0.00 3.51
5733 5962 8.788806 TGTTGTTGGTGTCATAAACTATTTAGG 58.211 33.333 3.22 0.00 0.00 2.69
5768 5997 4.991153 TTGCAGTTTTGTGTATGAACCA 57.009 36.364 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.