Multiple sequence alignment - TraesCS6A01G311500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G311500 chr6A 100.000 4476 0 0 906 5381 547809811 547814286 0.000000e+00 8266.0
1 TraesCS6A01G311500 chr6A 100.000 712 0 0 1 712 547808906 547809617 0.000000e+00 1315.0
2 TraesCS6A01G311500 chr6B 96.758 3547 105 7 906 4449 601341958 601345497 0.000000e+00 5904.0
3 TraesCS6A01G311500 chr6B 86.565 588 38 15 4482 5055 601345495 601346055 1.280000e-170 610.0
4 TraesCS6A01G311500 chr6B 84.561 570 49 25 147 699 601341395 601341942 3.690000e-146 529.0
5 TraesCS6A01G311500 chr6D 93.430 3044 110 34 2064 5055 401198132 401201137 0.000000e+00 4431.0
6 TraesCS6A01G311500 chr6D 96.980 1126 33 1 906 2031 401197005 401198129 0.000000e+00 1890.0
7 TraesCS6A01G311500 chr6D 89.216 408 19 13 311 704 401196604 401197000 2.250000e-133 486.0
8 TraesCS6A01G311500 chr6D 100.000 32 0 0 304 335 401196547 401196578 5.820000e-05 60.2
9 TraesCS6A01G311500 chr7D 80.959 772 123 17 945 1701 156215221 156215983 1.670000e-164 590.0
10 TraesCS6A01G311500 chr7D 76.427 403 92 2 3475 3877 156217936 156218335 1.170000e-51 215.0
11 TraesCS6A01G311500 chr7B 78.772 928 155 29 945 1856 118642429 118643330 7.770000e-163 584.0
12 TraesCS6A01G311500 chr7A 81.832 677 109 8 945 1611 210850679 210851351 1.690000e-154 556.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G311500 chr6A 547808906 547814286 5380 False 4790.500000 8266 100.000000 1 5381 2 chr6A.!!$F1 5380
1 TraesCS6A01G311500 chr6B 601341395 601346055 4660 False 2347.666667 5904 89.294667 147 5055 3 chr6B.!!$F1 4908
2 TraesCS6A01G311500 chr6D 401196547 401201137 4590 False 1716.800000 4431 94.906500 304 5055 4 chr6D.!!$F1 4751
3 TraesCS6A01G311500 chr7D 156215221 156218335 3114 False 402.500000 590 78.693000 945 3877 2 chr7D.!!$F1 2932
4 TraesCS6A01G311500 chr7B 118642429 118643330 901 False 584.000000 584 78.772000 945 1856 1 chr7B.!!$F1 911
5 TraesCS6A01G311500 chr7A 210850679 210851351 672 False 556.000000 556 81.832000 945 1611 1 chr7A.!!$F1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 420 0.105593 ATCACTACTCCATGCTGGCG 59.894 55.0 0.0 0.0 37.47 5.69 F
1739 1854 0.104855 ATCTGCGTGGCGTGACATAT 59.895 50.0 0.0 0.0 0.00 1.78 F
2911 3318 0.329596 GGGAGTGGCTTGTCAGGATT 59.670 55.0 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2296 2506 1.425066 TGGATGAGGGACTGTGCTTTT 59.575 47.619 0.00 0.0 41.55 2.27 R
2917 3324 0.102120 TGTGCAGCGTTTTCAAAGGG 59.898 50.000 0.00 0.0 0.00 3.95 R
4908 5536 0.103937 CTGGGCGCCTCAAAAACAAA 59.896 50.000 28.56 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.384816 CATGCGTCCATGGCTCTAA 57.615 52.632 6.96 0.00 44.07 2.10
22 23 1.667236 CATGCGTCCATGGCTCTAAA 58.333 50.000 6.96 0.00 44.07 1.85
23 24 1.600957 CATGCGTCCATGGCTCTAAAG 59.399 52.381 6.96 0.00 44.07 1.85
34 35 0.642800 GCTCTAAAGCGCTGAAGACG 59.357 55.000 12.58 11.60 39.10 4.18
35 36 1.732732 GCTCTAAAGCGCTGAAGACGA 60.733 52.381 12.58 1.08 39.10 4.20
36 37 2.181205 CTCTAAAGCGCTGAAGACGAG 58.819 52.381 12.58 7.81 0.00 4.18
37 38 1.135373 TCTAAAGCGCTGAAGACGAGG 60.135 52.381 12.58 0.00 0.00 4.63
38 39 0.601558 TAAAGCGCTGAAGACGAGGT 59.398 50.000 12.58 0.00 0.00 3.85
39 40 0.249911 AAAGCGCTGAAGACGAGGTT 60.250 50.000 12.58 0.00 0.00 3.50
40 41 0.601558 AAGCGCTGAAGACGAGGTTA 59.398 50.000 12.58 0.00 0.00 2.85
41 42 0.171455 AGCGCTGAAGACGAGGTTAG 59.829 55.000 10.39 0.00 0.00 2.34
42 43 0.170561 GCGCTGAAGACGAGGTTAGA 59.829 55.000 0.00 0.00 0.00 2.10
43 44 1.202313 GCGCTGAAGACGAGGTTAGAT 60.202 52.381 0.00 0.00 0.00 1.98
44 45 2.722071 CGCTGAAGACGAGGTTAGATC 58.278 52.381 0.00 0.00 0.00 2.75
45 46 2.722071 GCTGAAGACGAGGTTAGATCG 58.278 52.381 0.00 0.00 45.54 3.69
46 47 2.355132 GCTGAAGACGAGGTTAGATCGA 59.645 50.000 1.94 0.00 42.76 3.59
47 48 3.789459 GCTGAAGACGAGGTTAGATCGAC 60.789 52.174 1.94 0.00 42.76 4.20
48 49 2.350804 TGAAGACGAGGTTAGATCGACG 59.649 50.000 1.94 0.00 42.76 5.12
49 50 1.297664 AGACGAGGTTAGATCGACGG 58.702 55.000 1.94 0.00 42.76 4.79
50 51 0.316854 GACGAGGTTAGATCGACGGC 60.317 60.000 1.94 0.00 42.76 5.68
51 52 1.368969 CGAGGTTAGATCGACGGCG 60.369 63.158 2.87 2.87 42.76 6.46
65 66 4.477975 GGCGACACCGACGAGAGG 62.478 72.222 0.00 0.00 38.22 3.69
76 77 1.562017 GACGAGAGGCGAGAAAATCC 58.438 55.000 0.00 0.00 44.57 3.01
77 78 1.135333 GACGAGAGGCGAGAAAATCCT 59.865 52.381 0.00 0.00 44.57 3.24
78 79 2.358267 GACGAGAGGCGAGAAAATCCTA 59.642 50.000 0.00 0.00 44.57 2.94
79 80 2.359531 ACGAGAGGCGAGAAAATCCTAG 59.640 50.000 0.00 0.00 44.57 3.02
80 81 2.359531 CGAGAGGCGAGAAAATCCTAGT 59.640 50.000 0.00 0.00 44.57 2.57
81 82 3.549221 CGAGAGGCGAGAAAATCCTAGTC 60.549 52.174 0.00 0.00 44.57 2.59
82 83 2.359531 AGAGGCGAGAAAATCCTAGTCG 59.640 50.000 0.00 0.00 0.00 4.18
83 84 1.409427 AGGCGAGAAAATCCTAGTCGG 59.591 52.381 0.00 0.00 0.00 4.79
84 85 1.209998 GCGAGAAAATCCTAGTCGGC 58.790 55.000 0.00 0.00 0.00 5.54
85 86 1.202428 GCGAGAAAATCCTAGTCGGCT 60.202 52.381 0.00 0.00 0.00 5.52
86 87 2.738964 GCGAGAAAATCCTAGTCGGCTT 60.739 50.000 0.00 0.00 0.00 4.35
87 88 2.860735 CGAGAAAATCCTAGTCGGCTTG 59.139 50.000 0.00 0.00 0.00 4.01
88 89 3.198872 GAGAAAATCCTAGTCGGCTTGG 58.801 50.000 11.57 11.57 38.67 3.61
90 91 2.990066 AAATCCTAGTCGGCTTGGAG 57.010 50.000 23.96 2.12 46.65 3.86
91 92 1.123928 AATCCTAGTCGGCTTGGAGG 58.876 55.000 23.96 12.01 46.65 4.30
92 93 1.403687 ATCCTAGTCGGCTTGGAGGC 61.404 60.000 23.96 0.00 46.65 4.70
100 101 3.050275 GCTTGGAGGCGCTCGTTT 61.050 61.111 7.64 0.00 0.00 3.60
101 102 2.863153 CTTGGAGGCGCTCGTTTG 59.137 61.111 7.64 0.00 0.00 2.93
102 103 1.667830 CTTGGAGGCGCTCGTTTGA 60.668 57.895 7.64 0.00 0.00 2.69
103 104 1.630244 CTTGGAGGCGCTCGTTTGAG 61.630 60.000 7.64 0.00 45.49 3.02
104 105 2.048127 GGAGGCGCTCGTTTGAGT 60.048 61.111 7.64 0.00 44.48 3.41
105 106 1.214589 GGAGGCGCTCGTTTGAGTA 59.785 57.895 7.64 0.00 44.48 2.59
106 107 0.179108 GGAGGCGCTCGTTTGAGTAT 60.179 55.000 7.64 0.00 44.48 2.12
107 108 0.924090 GAGGCGCTCGTTTGAGTATG 59.076 55.000 7.64 0.00 44.48 2.39
108 109 0.530744 AGGCGCTCGTTTGAGTATGA 59.469 50.000 7.64 0.00 44.48 2.15
109 110 0.924090 GGCGCTCGTTTGAGTATGAG 59.076 55.000 7.64 0.00 44.48 2.90
110 111 1.630148 GCGCTCGTTTGAGTATGAGT 58.370 50.000 0.00 0.00 44.48 3.41
111 112 1.993370 GCGCTCGTTTGAGTATGAGTT 59.007 47.619 0.00 0.00 44.48 3.01
112 113 2.412089 GCGCTCGTTTGAGTATGAGTTT 59.588 45.455 0.00 0.00 44.48 2.66
113 114 3.120649 GCGCTCGTTTGAGTATGAGTTTT 60.121 43.478 0.00 0.00 44.48 2.43
114 115 4.610680 GCGCTCGTTTGAGTATGAGTTTTT 60.611 41.667 0.00 0.00 44.48 1.94
141 142 6.544620 AACACGATAATACAAACGTAGACG 57.455 37.500 0.00 0.00 46.33 4.18
142 143 4.496895 ACACGATAATACAAACGTAGACGC 59.503 41.667 1.14 0.00 44.43 5.19
143 144 4.731961 CACGATAATACAAACGTAGACGCT 59.268 41.667 1.14 0.00 44.43 5.07
144 145 4.966366 ACGATAATACAAACGTAGACGCTC 59.034 41.667 1.14 0.00 44.43 5.03
145 146 4.378030 CGATAATACAAACGTAGACGCTCC 59.622 45.833 1.14 0.00 44.43 4.70
151 152 2.874780 CGTAGACGCTCCGCACAC 60.875 66.667 0.00 0.00 0.00 3.82
153 154 3.755628 TAGACGCTCCGCACACCC 61.756 66.667 0.00 0.00 0.00 4.61
185 186 3.348119 AGCACATTCGAGAGACTGACTA 58.652 45.455 0.00 0.00 42.73 2.59
186 187 3.951037 AGCACATTCGAGAGACTGACTAT 59.049 43.478 0.00 0.00 42.73 2.12
208 209 4.436332 TCACATCATCTTGAGATTGACGG 58.564 43.478 0.90 0.00 31.21 4.79
213 214 4.748892 TCATCTTGAGATTGACGGAAGTC 58.251 43.478 0.00 0.00 46.58 3.01
230 231 3.686916 AGTCTAGAACTTGAACCCTGC 57.313 47.619 0.00 0.00 33.03 4.85
231 232 2.303311 AGTCTAGAACTTGAACCCTGCC 59.697 50.000 0.00 0.00 33.03 4.85
232 233 2.303311 GTCTAGAACTTGAACCCTGCCT 59.697 50.000 0.00 0.00 0.00 4.75
243 244 4.399764 CCTGCCTGGGTGAGGATA 57.600 61.111 0.00 0.00 46.33 2.59
244 245 1.832912 CCTGCCTGGGTGAGGATAC 59.167 63.158 0.00 0.00 46.33 2.24
245 246 1.700042 CCTGCCTGGGTGAGGATACC 61.700 65.000 0.00 0.00 46.33 2.73
246 247 2.032860 CTGCCTGGGTGAGGATACCG 62.033 65.000 0.00 0.00 46.33 4.02
247 248 1.760875 GCCTGGGTGAGGATACCGA 60.761 63.158 0.00 0.00 46.33 4.69
248 249 1.122019 GCCTGGGTGAGGATACCGAT 61.122 60.000 0.00 0.00 46.33 4.18
249 250 0.681733 CCTGGGTGAGGATACCGATG 59.318 60.000 0.00 0.00 46.33 3.84
250 251 1.414158 CTGGGTGAGGATACCGATGT 58.586 55.000 0.00 0.00 41.79 3.06
251 252 1.341531 CTGGGTGAGGATACCGATGTC 59.658 57.143 0.00 0.00 41.79 3.06
252 253 1.063190 TGGGTGAGGATACCGATGTCT 60.063 52.381 0.00 0.00 41.79 3.41
253 254 2.040178 GGGTGAGGATACCGATGTCTT 58.960 52.381 0.00 0.00 41.79 3.01
254 255 2.036089 GGGTGAGGATACCGATGTCTTC 59.964 54.545 0.00 0.00 41.79 2.87
255 256 2.036089 GGTGAGGATACCGATGTCTTCC 59.964 54.545 0.00 0.00 37.17 3.46
256 257 2.959707 GTGAGGATACCGATGTCTTCCT 59.040 50.000 0.00 0.00 39.00 3.36
257 258 4.142790 GTGAGGATACCGATGTCTTCCTA 58.857 47.826 0.00 0.00 37.37 2.94
258 259 4.583489 GTGAGGATACCGATGTCTTCCTAA 59.417 45.833 0.00 0.00 37.37 2.69
259 260 5.244178 GTGAGGATACCGATGTCTTCCTAAT 59.756 44.000 0.00 0.00 37.37 1.73
260 261 5.839063 TGAGGATACCGATGTCTTCCTAATT 59.161 40.000 0.00 0.00 37.37 1.40
261 262 7.008332 TGAGGATACCGATGTCTTCCTAATTA 58.992 38.462 0.00 0.00 37.37 1.40
262 263 7.674348 TGAGGATACCGATGTCTTCCTAATTAT 59.326 37.037 0.00 0.00 37.37 1.28
263 264 8.068892 AGGATACCGATGTCTTCCTAATTATC 57.931 38.462 0.00 0.00 36.16 1.75
264 265 7.896496 AGGATACCGATGTCTTCCTAATTATCT 59.104 37.037 0.00 0.00 36.16 1.98
265 266 9.186837 GGATACCGATGTCTTCCTAATTATCTA 57.813 37.037 0.00 0.00 0.00 1.98
268 269 7.668492 ACCGATGTCTTCCTAATTATCTAACC 58.332 38.462 0.00 0.00 0.00 2.85
269 270 6.807230 CCGATGTCTTCCTAATTATCTAACCG 59.193 42.308 0.00 0.00 0.00 4.44
270 271 6.308282 CGATGTCTTCCTAATTATCTAACCGC 59.692 42.308 0.00 0.00 0.00 5.68
271 272 6.474140 TGTCTTCCTAATTATCTAACCGCA 57.526 37.500 0.00 0.00 0.00 5.69
272 273 6.513180 TGTCTTCCTAATTATCTAACCGCAG 58.487 40.000 0.00 0.00 0.00 5.18
295 296 4.324402 GGTTGGTTTACGTGTGACTATACG 59.676 45.833 0.00 0.00 45.45 3.06
362 416 6.992664 ATAGAAAGATCACTACTCCATGCT 57.007 37.500 0.00 0.00 0.00 3.79
365 419 1.415659 AGATCACTACTCCATGCTGGC 59.584 52.381 0.00 0.00 37.47 4.85
366 420 0.105593 ATCACTACTCCATGCTGGCG 59.894 55.000 0.00 0.00 37.47 5.69
367 421 0.970427 TCACTACTCCATGCTGGCGA 60.970 55.000 0.00 0.00 37.47 5.54
426 481 3.384789 ACAAAGGGAAGAAAGCAGGAAAC 59.615 43.478 0.00 0.00 0.00 2.78
442 497 5.163764 GCAGGAAACAAAAGGGTTGAAAAAG 60.164 40.000 0.00 0.00 0.00 2.27
503 558 0.830023 CCGGATCTCCCCTTCCTCTC 60.830 65.000 0.00 0.00 0.00 3.20
504 559 0.187361 CGGATCTCCCCTTCCTCTCT 59.813 60.000 0.00 0.00 0.00 3.10
505 560 1.715785 GGATCTCCCCTTCCTCTCTG 58.284 60.000 0.00 0.00 0.00 3.35
516 575 1.690010 TCCTCTCTGTACCCCTACCA 58.310 55.000 0.00 0.00 0.00 3.25
522 581 1.570501 TCTGTACCCCTACCACGGTAT 59.429 52.381 0.00 0.00 36.99 2.73
606 676 3.157949 CCGCCTCCTCCTCCTTCC 61.158 72.222 0.00 0.00 0.00 3.46
644 714 1.573829 CCCGCACGCGCCATTAATAT 61.574 55.000 5.73 0.00 38.24 1.28
646 716 1.201877 CCGCACGCGCCATTAATATAC 60.202 52.381 5.73 0.00 38.24 1.47
1730 1845 1.523154 TTTGGTTGGATCTGCGTGGC 61.523 55.000 0.00 0.00 0.00 5.01
1739 1854 0.104855 ATCTGCGTGGCGTGACATAT 59.895 50.000 0.00 0.00 0.00 1.78
1762 1877 3.868757 TTTCTGGATCTGTCGTTCGAT 57.131 42.857 0.00 0.00 0.00 3.59
2021 2198 7.115095 GGCTCAAGTAATCGTTTATACTGCTAG 59.885 40.741 0.00 0.00 32.84 3.42
2042 2219 9.363401 TGCTAGTAGTAGAAAAGAGCCATATAA 57.637 33.333 8.87 0.00 0.00 0.98
2291 2501 0.606096 CTGATGTGTCACCCGGTGTA 59.394 55.000 17.32 5.40 34.79 2.90
2296 2506 1.065636 TGTGTCACCCGGTGTAACAAA 60.066 47.619 17.32 7.73 39.98 2.83
2571 2790 3.751175 AGTTGTTCCGTATGAATGTGGTG 59.249 43.478 0.00 0.00 34.90 4.17
2572 2791 2.705730 TGTTCCGTATGAATGTGGTGG 58.294 47.619 0.00 0.00 34.90 4.61
2573 2792 2.039216 TGTTCCGTATGAATGTGGTGGT 59.961 45.455 0.00 0.00 34.90 4.16
2616 2865 2.103153 TGAAGGTGGTTCAGAGAGGT 57.897 50.000 0.00 0.00 40.45 3.85
2773 3172 9.838339 ACAGTTCTATTCAATTAGGACCATAAG 57.162 33.333 0.00 0.00 29.18 1.73
2911 3318 0.329596 GGGAGTGGCTTGTCAGGATT 59.670 55.000 0.00 0.00 0.00 3.01
2917 3324 1.344114 TGGCTTGTCAGGATTTTTGGC 59.656 47.619 0.00 0.00 0.00 4.52
2929 3336 3.249799 GGATTTTTGGCCCTTTGAAAACG 59.750 43.478 0.00 0.00 0.00 3.60
2935 3342 1.215014 GCCCTTTGAAAACGCTGCAC 61.215 55.000 0.00 0.00 0.00 4.57
3108 3515 3.006859 CAGTGGCCATAGTCGGATATTCA 59.993 47.826 9.72 0.00 0.00 2.57
3342 3917 6.358974 TGATTTTACCTGAGTCTGTCATCA 57.641 37.500 0.00 0.00 33.51 3.07
3347 3922 6.550938 TTACCTGAGTCTGTCATCAATCAT 57.449 37.500 0.00 0.00 33.51 2.45
3379 3960 6.040616 TCTGCAAGCCTTATACTCCTAGTAAC 59.959 42.308 0.00 0.00 33.89 2.50
3394 3975 3.258622 CTAGTAACTAGTAGCCATGGGCC 59.741 52.174 15.13 0.00 38.10 5.80
3715 4296 1.490490 TCCAGTGTTCCAAACAGCTCT 59.510 47.619 0.00 0.00 43.10 4.09
3838 4419 3.246619 GAGAACTGCGGTTACTCAAGAG 58.753 50.000 22.45 0.00 35.58 2.85
3987 4569 9.273016 CAGATTTCCCTATATGACAAATTACGT 57.727 33.333 0.00 0.00 0.00 3.57
4131 4716 5.058490 AGCAACGTAAAAGCTGTACCTTTA 58.942 37.500 4.26 0.00 37.20 1.85
4278 4863 4.013728 TCCTTATCATTTCCCACCAAACG 58.986 43.478 0.00 0.00 0.00 3.60
4280 4865 4.644685 CCTTATCATTTCCCACCAAACGAT 59.355 41.667 0.00 0.00 0.00 3.73
4570 5155 1.915141 CAATGCCAAAGTCCCTGAGT 58.085 50.000 0.00 0.00 0.00 3.41
4605 5190 4.835615 TCTGAAGTAGAACTCAGCCTCTTT 59.164 41.667 0.00 0.00 30.84 2.52
4621 5206 1.276421 TCTTTAGCTGCACCCTCACTC 59.724 52.381 1.02 0.00 0.00 3.51
4633 5218 0.685097 CCTCACTCGGGGTTGAAGAA 59.315 55.000 0.00 0.00 0.00 2.52
4670 5255 5.585047 GCTCCTCTATTATCCAAAACGTGTT 59.415 40.000 0.00 0.00 0.00 3.32
4745 5339 3.688185 CCAGACTACGACTTGCTACTACA 59.312 47.826 0.00 0.00 0.00 2.74
4746 5340 4.201832 CCAGACTACGACTTGCTACTACAG 60.202 50.000 0.00 0.00 0.00 2.74
4844 5471 0.313672 TAAAACAGCTTGGCTTGGCG 59.686 50.000 0.00 0.00 36.40 5.69
4874 5502 2.920490 CCGTTGTTTCAGGTGTGTTTTG 59.080 45.455 0.00 0.00 0.00 2.44
4883 5511 1.134946 AGGTGTGTTTTGCAGCTTCAC 59.865 47.619 0.00 0.00 41.24 3.18
4907 5535 4.085876 GCAGTGTGCCCAGTGATT 57.914 55.556 8.32 0.00 43.49 2.57
4908 5536 2.344535 GCAGTGTGCCCAGTGATTT 58.655 52.632 8.32 0.00 43.49 2.17
4909 5537 0.675633 GCAGTGTGCCCAGTGATTTT 59.324 50.000 8.32 0.00 43.49 1.82
4910 5538 1.069049 GCAGTGTGCCCAGTGATTTTT 59.931 47.619 8.32 0.00 43.49 1.94
4911 5539 2.746269 CAGTGTGCCCAGTGATTTTTG 58.254 47.619 0.00 0.00 43.49 2.44
4912 5540 2.101249 CAGTGTGCCCAGTGATTTTTGT 59.899 45.455 0.00 0.00 43.49 2.83
4913 5541 2.765699 AGTGTGCCCAGTGATTTTTGTT 59.234 40.909 0.00 0.00 0.00 2.83
4914 5542 3.197549 AGTGTGCCCAGTGATTTTTGTTT 59.802 39.130 0.00 0.00 0.00 2.83
4915 5543 3.938334 GTGTGCCCAGTGATTTTTGTTTT 59.062 39.130 0.00 0.00 0.00 2.43
4916 5544 4.394610 GTGTGCCCAGTGATTTTTGTTTTT 59.605 37.500 0.00 0.00 0.00 1.94
4917 5545 4.394300 TGTGCCCAGTGATTTTTGTTTTTG 59.606 37.500 0.00 0.00 0.00 2.44
4918 5546 4.633565 GTGCCCAGTGATTTTTGTTTTTGA 59.366 37.500 0.00 0.00 0.00 2.69
4919 5547 4.874966 TGCCCAGTGATTTTTGTTTTTGAG 59.125 37.500 0.00 0.00 0.00 3.02
4920 5548 4.273235 GCCCAGTGATTTTTGTTTTTGAGG 59.727 41.667 0.00 0.00 0.00 3.86
4921 5549 4.273235 CCCAGTGATTTTTGTTTTTGAGGC 59.727 41.667 0.00 0.00 0.00 4.70
4922 5550 4.025813 CCAGTGATTTTTGTTTTTGAGGCG 60.026 41.667 0.00 0.00 0.00 5.52
4923 5551 3.555547 AGTGATTTTTGTTTTTGAGGCGC 59.444 39.130 0.00 0.00 0.00 6.53
4924 5552 2.869192 TGATTTTTGTTTTTGAGGCGCC 59.131 40.909 21.89 21.89 0.00 6.53
4925 5553 1.657822 TTTTTGTTTTTGAGGCGCCC 58.342 45.000 26.15 15.80 0.00 6.13
4926 5554 0.537188 TTTTGTTTTTGAGGCGCCCA 59.463 45.000 26.15 18.56 0.00 5.36
4929 5557 1.007387 GTTTTTGAGGCGCCCAGTG 60.007 57.895 26.15 0.00 0.00 3.66
4980 5611 1.941668 GCTTCACTGCCTCTGTGTACC 60.942 57.143 0.00 0.00 35.37 3.34
4983 5614 0.247736 CACTGCCTCTGTGTACCCTC 59.752 60.000 0.00 0.00 0.00 4.30
5011 5643 1.512926 CAAGTGTGGCACTCAGTACC 58.487 55.000 19.83 0.00 44.62 3.34
5023 5655 1.296715 CAGTACCCACTGCCTCCAC 59.703 63.158 0.00 0.00 45.44 4.02
5024 5656 1.152118 AGTACCCACTGCCTCCACA 60.152 57.895 0.00 0.00 32.25 4.17
5050 5682 3.452627 AGCATTGTAAGTAGAGTGGAGGG 59.547 47.826 0.00 0.00 0.00 4.30
5055 5687 0.492276 AAGTAGAGTGGAGGGGGTGT 59.508 55.000 0.00 0.00 0.00 4.16
5056 5688 0.492276 AGTAGAGTGGAGGGGGTGTT 59.508 55.000 0.00 0.00 0.00 3.32
5057 5689 1.132495 AGTAGAGTGGAGGGGGTGTTT 60.132 52.381 0.00 0.00 0.00 2.83
5058 5690 1.703513 GTAGAGTGGAGGGGGTGTTTT 59.296 52.381 0.00 0.00 0.00 2.43
5059 5691 1.231963 AGAGTGGAGGGGGTGTTTTT 58.768 50.000 0.00 0.00 0.00 1.94
5078 5710 3.512033 TTTTTAAGGCAAACACACGCT 57.488 38.095 0.00 0.00 0.00 5.07
5079 5711 4.634184 TTTTTAAGGCAAACACACGCTA 57.366 36.364 0.00 0.00 0.00 4.26
5080 5712 4.634184 TTTTAAGGCAAACACACGCTAA 57.366 36.364 0.00 0.00 0.00 3.09
5081 5713 4.839668 TTTAAGGCAAACACACGCTAAT 57.160 36.364 0.00 0.00 0.00 1.73
5082 5714 4.839668 TTAAGGCAAACACACGCTAATT 57.160 36.364 0.00 0.00 0.00 1.40
5083 5715 3.726291 AAGGCAAACACACGCTAATTT 57.274 38.095 0.00 0.00 0.00 1.82
5084 5716 3.726291 AGGCAAACACACGCTAATTTT 57.274 38.095 0.00 0.00 0.00 1.82
5085 5717 4.839668 AGGCAAACACACGCTAATTTTA 57.160 36.364 0.00 0.00 0.00 1.52
5086 5718 5.385509 AGGCAAACACACGCTAATTTTAT 57.614 34.783 0.00 0.00 0.00 1.40
5087 5719 5.399013 AGGCAAACACACGCTAATTTTATC 58.601 37.500 0.00 0.00 0.00 1.75
5088 5720 4.561213 GGCAAACACACGCTAATTTTATCC 59.439 41.667 0.00 0.00 0.00 2.59
5089 5721 5.157781 GCAAACACACGCTAATTTTATCCA 58.842 37.500 0.00 0.00 0.00 3.41
5090 5722 5.286082 GCAAACACACGCTAATTTTATCCAG 59.714 40.000 0.00 0.00 0.00 3.86
5091 5723 5.560966 AACACACGCTAATTTTATCCAGG 57.439 39.130 0.00 0.00 0.00 4.45
5092 5724 3.945285 ACACACGCTAATTTTATCCAGGG 59.055 43.478 0.00 0.00 0.00 4.45
5093 5725 3.315191 CACACGCTAATTTTATCCAGGGG 59.685 47.826 0.00 0.00 0.00 4.79
5094 5726 3.053917 ACACGCTAATTTTATCCAGGGGT 60.054 43.478 0.00 0.00 0.00 4.95
5095 5727 4.164604 ACACGCTAATTTTATCCAGGGGTA 59.835 41.667 0.00 0.00 0.00 3.69
5096 5728 5.127491 CACGCTAATTTTATCCAGGGGTAA 58.873 41.667 0.00 0.00 0.00 2.85
5097 5729 5.008316 CACGCTAATTTTATCCAGGGGTAAC 59.992 44.000 0.00 0.00 0.00 2.50
5098 5730 5.127491 CGCTAATTTTATCCAGGGGTAACA 58.873 41.667 0.00 0.00 39.74 2.41
5099 5731 5.591067 CGCTAATTTTATCCAGGGGTAACAA 59.409 40.000 0.00 0.00 39.74 2.83
5100 5732 6.264518 CGCTAATTTTATCCAGGGGTAACAAT 59.735 38.462 0.00 0.00 39.74 2.71
5101 5733 7.433680 GCTAATTTTATCCAGGGGTAACAATG 58.566 38.462 0.00 0.00 39.74 2.82
5102 5734 7.069455 GCTAATTTTATCCAGGGGTAACAATGT 59.931 37.037 0.00 0.00 39.74 2.71
5103 5735 7.806680 AATTTTATCCAGGGGTAACAATGTT 57.193 32.000 3.43 3.43 39.74 2.71
5104 5736 7.806680 ATTTTATCCAGGGGTAACAATGTTT 57.193 32.000 3.17 0.00 39.74 2.83
5105 5737 8.903059 ATTTTATCCAGGGGTAACAATGTTTA 57.097 30.769 3.17 0.00 39.74 2.01
5106 5738 7.706100 TTTATCCAGGGGTAACAATGTTTAC 57.294 36.000 3.17 0.88 39.74 2.01
5107 5739 4.726035 TCCAGGGGTAACAATGTTTACA 57.274 40.909 3.17 0.00 34.17 2.41
5108 5740 4.658063 TCCAGGGGTAACAATGTTTACAG 58.342 43.478 3.17 0.00 34.17 2.74
5109 5741 4.105057 TCCAGGGGTAACAATGTTTACAGT 59.895 41.667 3.17 0.00 34.17 3.55
5110 5742 4.457949 CCAGGGGTAACAATGTTTACAGTC 59.542 45.833 3.17 0.00 34.17 3.51
5111 5743 5.067273 CAGGGGTAACAATGTTTACAGTCA 58.933 41.667 3.17 0.00 34.17 3.41
5112 5744 5.710099 CAGGGGTAACAATGTTTACAGTCAT 59.290 40.000 3.17 0.00 34.17 3.06
5113 5745 6.882140 CAGGGGTAACAATGTTTACAGTCATA 59.118 38.462 3.17 0.00 34.17 2.15
5114 5746 7.392113 CAGGGGTAACAATGTTTACAGTCATAA 59.608 37.037 3.17 0.00 34.17 1.90
5115 5747 7.610305 AGGGGTAACAATGTTTACAGTCATAAG 59.390 37.037 3.17 0.00 34.17 1.73
5116 5748 7.148137 GGGGTAACAATGTTTACAGTCATAAGG 60.148 40.741 3.17 0.00 34.17 2.69
5117 5749 7.608761 GGGTAACAATGTTTACAGTCATAAGGA 59.391 37.037 3.17 0.00 34.17 3.36
5118 5750 9.005777 GGTAACAATGTTTACAGTCATAAGGAA 57.994 33.333 3.17 0.00 34.17 3.36
5120 5752 8.918202 AACAATGTTTACAGTCATAAGGAAGA 57.082 30.769 0.00 0.00 0.00 2.87
5121 5753 8.324163 ACAATGTTTACAGTCATAAGGAAGAC 57.676 34.615 0.00 0.00 35.02 3.01
5122 5754 8.157476 ACAATGTTTACAGTCATAAGGAAGACT 58.843 33.333 0.00 0.00 45.46 3.24
5123 5755 8.660373 CAATGTTTACAGTCATAAGGAAGACTC 58.340 37.037 0.00 0.00 42.87 3.36
5124 5756 7.297936 TGTTTACAGTCATAAGGAAGACTCA 57.702 36.000 0.00 0.00 42.87 3.41
5125 5757 7.732025 TGTTTACAGTCATAAGGAAGACTCAA 58.268 34.615 0.00 0.00 42.87 3.02
5126 5758 7.656137 TGTTTACAGTCATAAGGAAGACTCAAC 59.344 37.037 0.00 0.00 42.87 3.18
5127 5759 5.153950 ACAGTCATAAGGAAGACTCAACC 57.846 43.478 0.00 0.00 42.87 3.77
5128 5760 4.593206 ACAGTCATAAGGAAGACTCAACCA 59.407 41.667 0.00 0.00 42.87 3.67
5129 5761 5.071788 ACAGTCATAAGGAAGACTCAACCAA 59.928 40.000 0.00 0.00 42.87 3.67
5130 5762 5.997746 CAGTCATAAGGAAGACTCAACCAAA 59.002 40.000 0.00 0.00 42.87 3.28
5131 5763 5.998363 AGTCATAAGGAAGACTCAACCAAAC 59.002 40.000 0.00 0.00 40.96 2.93
5132 5764 4.994852 TCATAAGGAAGACTCAACCAAACG 59.005 41.667 0.00 0.00 0.00 3.60
5133 5765 3.277142 AAGGAAGACTCAACCAAACGT 57.723 42.857 0.00 0.00 0.00 3.99
5134 5766 2.561569 AGGAAGACTCAACCAAACGTG 58.438 47.619 0.00 0.00 0.00 4.49
5135 5767 2.169769 AGGAAGACTCAACCAAACGTGA 59.830 45.455 0.00 0.00 0.00 4.35
5136 5768 2.287103 GGAAGACTCAACCAAACGTGAC 59.713 50.000 0.00 0.00 0.00 3.67
5137 5769 1.567504 AGACTCAACCAAACGTGACG 58.432 50.000 2.24 2.24 0.00 4.35
5138 5770 1.134907 AGACTCAACCAAACGTGACGT 60.135 47.619 4.10 4.10 43.97 4.34
5139 5771 1.257155 GACTCAACCAAACGTGACGTC 59.743 52.381 12.37 9.11 39.99 4.34
5140 5772 0.580104 CTCAACCAAACGTGACGTCC 59.420 55.000 12.37 3.43 39.99 4.79
5141 5773 0.176219 TCAACCAAACGTGACGTCCT 59.824 50.000 12.37 0.00 39.99 3.85
5142 5774 1.408340 TCAACCAAACGTGACGTCCTA 59.592 47.619 12.37 0.00 39.99 2.94
5143 5775 2.036217 TCAACCAAACGTGACGTCCTAT 59.964 45.455 12.37 0.00 39.99 2.57
5144 5776 3.255395 TCAACCAAACGTGACGTCCTATA 59.745 43.478 12.37 0.00 39.99 1.31
5145 5777 3.221964 ACCAAACGTGACGTCCTATAC 57.778 47.619 12.37 3.19 39.99 1.47
5146 5778 2.094545 ACCAAACGTGACGTCCTATACC 60.095 50.000 12.37 0.00 39.99 2.73
5147 5779 2.165030 CCAAACGTGACGTCCTATACCT 59.835 50.000 12.37 0.00 39.99 3.08
5148 5780 3.378112 CCAAACGTGACGTCCTATACCTA 59.622 47.826 12.37 0.00 39.99 3.08
5149 5781 4.497006 CCAAACGTGACGTCCTATACCTAG 60.497 50.000 12.37 0.00 39.99 3.02
5150 5782 3.827008 ACGTGACGTCCTATACCTAGA 57.173 47.619 14.12 0.00 33.69 2.43
5151 5783 3.726607 ACGTGACGTCCTATACCTAGAG 58.273 50.000 14.12 0.00 33.69 2.43
5152 5784 3.386078 ACGTGACGTCCTATACCTAGAGA 59.614 47.826 14.12 0.00 33.69 3.10
5153 5785 4.040217 ACGTGACGTCCTATACCTAGAGAT 59.960 45.833 14.12 0.00 33.69 2.75
5154 5786 4.389382 CGTGACGTCCTATACCTAGAGATG 59.611 50.000 14.12 0.00 0.00 2.90
5155 5787 4.154556 GTGACGTCCTATACCTAGAGATGC 59.845 50.000 14.12 0.00 0.00 3.91
5156 5788 4.202430 TGACGTCCTATACCTAGAGATGCA 60.202 45.833 14.12 0.00 0.00 3.96
5157 5789 4.328536 ACGTCCTATACCTAGAGATGCAG 58.671 47.826 0.00 0.00 0.00 4.41
5158 5790 3.127895 CGTCCTATACCTAGAGATGCAGC 59.872 52.174 0.00 0.00 0.00 5.25
5159 5791 3.127895 GTCCTATACCTAGAGATGCAGCG 59.872 52.174 0.00 0.00 0.00 5.18
5160 5792 3.085533 CCTATACCTAGAGATGCAGCGT 58.914 50.000 0.00 0.00 0.00 5.07
5161 5793 3.119673 CCTATACCTAGAGATGCAGCGTG 60.120 52.174 0.00 0.00 0.00 5.34
5162 5794 0.385751 TACCTAGAGATGCAGCGTGC 59.614 55.000 0.00 3.44 45.29 5.34
5163 5795 1.326213 ACCTAGAGATGCAGCGTGCT 61.326 55.000 0.00 0.00 45.31 4.40
5164 5796 0.179089 CCTAGAGATGCAGCGTGCTT 60.179 55.000 0.00 5.14 45.31 3.91
5165 5797 1.649664 CTAGAGATGCAGCGTGCTTT 58.350 50.000 0.00 0.27 45.31 3.51
5166 5798 2.005451 CTAGAGATGCAGCGTGCTTTT 58.995 47.619 0.00 1.37 45.31 2.27
5167 5799 0.520404 AGAGATGCAGCGTGCTTTTG 59.480 50.000 0.00 0.00 45.31 2.44
5168 5800 1.069378 GAGATGCAGCGTGCTTTTGC 61.069 55.000 0.00 0.00 45.31 3.68
5179 5811 3.683581 GCTTTTGCAAGGCTACGAG 57.316 52.632 15.97 2.81 46.58 4.18
5180 5812 0.455126 GCTTTTGCAAGGCTACGAGC 60.455 55.000 15.97 7.86 46.58 5.03
5193 5825 4.419522 GCTACGAGCCTCAAAATTGAAA 57.580 40.909 0.00 0.00 36.64 2.69
5194 5826 4.986622 GCTACGAGCCTCAAAATTGAAAT 58.013 39.130 0.00 0.00 36.64 2.17
5195 5827 5.030936 GCTACGAGCCTCAAAATTGAAATC 58.969 41.667 0.00 0.00 36.64 2.17
5196 5828 5.163713 GCTACGAGCCTCAAAATTGAAATCT 60.164 40.000 0.00 0.00 36.64 2.40
5197 5829 5.712152 ACGAGCCTCAAAATTGAAATCTT 57.288 34.783 0.00 0.00 36.64 2.40
5198 5830 6.089249 ACGAGCCTCAAAATTGAAATCTTT 57.911 33.333 0.00 0.00 36.64 2.52
5199 5831 6.515832 ACGAGCCTCAAAATTGAAATCTTTT 58.484 32.000 0.00 0.00 36.64 2.27
5200 5832 6.986231 ACGAGCCTCAAAATTGAAATCTTTTT 59.014 30.769 0.00 0.00 36.64 1.94
5201 5833 7.042523 ACGAGCCTCAAAATTGAAATCTTTTTG 60.043 33.333 12.15 12.15 40.17 2.44
5202 5834 6.962686 AGCCTCAAAATTGAAATCTTTTTGC 58.037 32.000 12.95 6.28 39.20 3.68
5203 5835 6.769341 AGCCTCAAAATTGAAATCTTTTTGCT 59.231 30.769 12.95 7.69 39.20 3.91
5204 5836 7.041576 AGCCTCAAAATTGAAATCTTTTTGCTC 60.042 33.333 12.95 7.71 39.20 4.26
5205 5837 7.254863 GCCTCAAAATTGAAATCTTTTTGCTCA 60.255 33.333 12.95 0.00 39.20 4.26
5206 5838 8.780249 CCTCAAAATTGAAATCTTTTTGCTCAT 58.220 29.630 12.95 0.00 39.20 2.90
5207 5839 9.594038 CTCAAAATTGAAATCTTTTTGCTCATG 57.406 29.630 12.95 0.00 39.20 3.07
5208 5840 9.327628 TCAAAATTGAAATCTTTTTGCTCATGA 57.672 25.926 0.00 0.00 39.20 3.07
5209 5841 9.938670 CAAAATTGAAATCTTTTTGCTCATGAA 57.061 25.926 0.00 0.00 34.64 2.57
5210 5842 9.940166 AAAATTGAAATCTTTTTGCTCATGAAC 57.060 25.926 0.00 0.00 0.00 3.18
5211 5843 8.665643 AATTGAAATCTTTTTGCTCATGAACA 57.334 26.923 0.00 0.00 0.00 3.18
5212 5844 8.665643 ATTGAAATCTTTTTGCTCATGAACAA 57.334 26.923 7.45 7.45 0.00 2.83
5213 5845 8.489990 TTGAAATCTTTTTGCTCATGAACAAA 57.510 26.923 18.07 18.07 34.11 2.83
5214 5846 8.133754 TGAAATCTTTTTGCTCATGAACAAAG 57.866 30.769 20.28 12.54 37.11 2.77
5215 5847 7.225145 TGAAATCTTTTTGCTCATGAACAAAGG 59.775 33.333 20.28 17.21 37.11 3.11
5216 5848 5.850557 TCTTTTTGCTCATGAACAAAGGA 57.149 34.783 20.28 18.70 37.11 3.36
5217 5849 5.835257 TCTTTTTGCTCATGAACAAAGGAG 58.165 37.500 20.28 20.22 37.11 3.69
5218 5850 4.589216 TTTTGCTCATGAACAAAGGAGG 57.411 40.909 20.28 0.00 37.11 4.30
5219 5851 3.507162 TTGCTCATGAACAAAGGAGGA 57.493 42.857 9.07 0.00 0.00 3.71
5220 5852 3.507162 TGCTCATGAACAAAGGAGGAA 57.493 42.857 0.00 0.00 0.00 3.36
5221 5853 3.831323 TGCTCATGAACAAAGGAGGAAA 58.169 40.909 0.00 0.00 0.00 3.13
5222 5854 3.822735 TGCTCATGAACAAAGGAGGAAAG 59.177 43.478 0.00 0.00 0.00 2.62
5223 5855 3.823304 GCTCATGAACAAAGGAGGAAAGT 59.177 43.478 0.00 0.00 0.00 2.66
5224 5856 4.279420 GCTCATGAACAAAGGAGGAAAGTT 59.721 41.667 0.00 0.00 0.00 2.66
5225 5857 5.221322 GCTCATGAACAAAGGAGGAAAGTTT 60.221 40.000 0.00 0.00 0.00 2.66
5226 5858 6.016276 GCTCATGAACAAAGGAGGAAAGTTTA 60.016 38.462 0.00 0.00 0.00 2.01
5227 5859 7.470009 GCTCATGAACAAAGGAGGAAAGTTTAA 60.470 37.037 0.00 0.00 0.00 1.52
5228 5860 8.477419 TCATGAACAAAGGAGGAAAGTTTAAT 57.523 30.769 0.00 0.00 0.00 1.40
5229 5861 8.923270 TCATGAACAAAGGAGGAAAGTTTAATT 58.077 29.630 0.00 0.00 0.00 1.40
5230 5862 9.546428 CATGAACAAAGGAGGAAAGTTTAATTT 57.454 29.630 0.00 0.00 0.00 1.82
5233 5865 9.193133 GAACAAAGGAGGAAAGTTTAATTTAGC 57.807 33.333 0.00 0.00 0.00 3.09
5234 5866 7.667557 ACAAAGGAGGAAAGTTTAATTTAGCC 58.332 34.615 0.00 0.00 0.00 3.93
5235 5867 6.852420 AAGGAGGAAAGTTTAATTTAGCCC 57.148 37.500 0.00 0.00 0.00 5.19
5236 5868 4.948004 AGGAGGAAAGTTTAATTTAGCCCG 59.052 41.667 0.00 0.00 0.00 6.13
5237 5869 4.945543 GGAGGAAAGTTTAATTTAGCCCGA 59.054 41.667 0.00 0.00 0.00 5.14
5238 5870 5.416639 GGAGGAAAGTTTAATTTAGCCCGAA 59.583 40.000 0.00 0.00 0.00 4.30
5239 5871 6.071784 GGAGGAAAGTTTAATTTAGCCCGAAA 60.072 38.462 0.00 0.00 0.00 3.46
5240 5872 7.363530 GGAGGAAAGTTTAATTTAGCCCGAAAT 60.364 37.037 0.00 0.00 0.00 2.17
5241 5873 7.320399 AGGAAAGTTTAATTTAGCCCGAAATG 58.680 34.615 0.00 0.00 0.00 2.32
5242 5874 7.039293 AGGAAAGTTTAATTTAGCCCGAAATGT 60.039 33.333 0.00 0.00 0.00 2.71
5243 5875 8.245491 GGAAAGTTTAATTTAGCCCGAAATGTA 58.755 33.333 0.00 0.00 0.00 2.29
5244 5876 9.285770 GAAAGTTTAATTTAGCCCGAAATGTAG 57.714 33.333 0.00 0.00 0.00 2.74
5245 5877 6.792326 AGTTTAATTTAGCCCGAAATGTAGC 58.208 36.000 0.00 0.00 0.00 3.58
5246 5878 6.376018 AGTTTAATTTAGCCCGAAATGTAGCA 59.624 34.615 0.00 0.00 0.00 3.49
5247 5879 6.761099 TTAATTTAGCCCGAAATGTAGCAA 57.239 33.333 0.00 0.00 0.00 3.91
5248 5880 4.900635 ATTTAGCCCGAAATGTAGCAAG 57.099 40.909 0.00 0.00 0.00 4.01
5249 5881 3.343941 TTAGCCCGAAATGTAGCAAGT 57.656 42.857 0.00 0.00 0.00 3.16
5250 5882 2.200373 AGCCCGAAATGTAGCAAGTT 57.800 45.000 0.00 0.00 0.00 2.66
5251 5883 2.514803 AGCCCGAAATGTAGCAAGTTT 58.485 42.857 0.00 0.00 0.00 2.66
5252 5884 2.488153 AGCCCGAAATGTAGCAAGTTTC 59.512 45.455 0.00 0.00 0.00 2.78
5253 5885 2.415491 GCCCGAAATGTAGCAAGTTTCC 60.415 50.000 0.00 0.00 0.00 3.13
5254 5886 2.163613 CCCGAAATGTAGCAAGTTTCCC 59.836 50.000 0.00 0.00 0.00 3.97
5255 5887 3.081804 CCGAAATGTAGCAAGTTTCCCT 58.918 45.455 0.00 0.00 0.00 4.20
5256 5888 3.127030 CCGAAATGTAGCAAGTTTCCCTC 59.873 47.826 0.00 0.00 0.00 4.30
5257 5889 3.127030 CGAAATGTAGCAAGTTTCCCTCC 59.873 47.826 0.00 0.00 0.00 4.30
5258 5890 2.808906 ATGTAGCAAGTTTCCCTCCC 57.191 50.000 0.00 0.00 0.00 4.30
5259 5891 1.742308 TGTAGCAAGTTTCCCTCCCT 58.258 50.000 0.00 0.00 0.00 4.20
5260 5892 2.062636 TGTAGCAAGTTTCCCTCCCTT 58.937 47.619 0.00 0.00 0.00 3.95
5261 5893 2.445525 TGTAGCAAGTTTCCCTCCCTTT 59.554 45.455 0.00 0.00 0.00 3.11
5262 5894 2.294449 AGCAAGTTTCCCTCCCTTTC 57.706 50.000 0.00 0.00 0.00 2.62
5263 5895 1.783365 AGCAAGTTTCCCTCCCTTTCT 59.217 47.619 0.00 0.00 0.00 2.52
5264 5896 2.163509 GCAAGTTTCCCTCCCTTTCTC 58.836 52.381 0.00 0.00 0.00 2.87
5265 5897 2.796557 CAAGTTTCCCTCCCTTTCTCC 58.203 52.381 0.00 0.00 0.00 3.71
5266 5898 1.373536 AGTTTCCCTCCCTTTCTCCC 58.626 55.000 0.00 0.00 0.00 4.30
5267 5899 1.073098 GTTTCCCTCCCTTTCTCCCA 58.927 55.000 0.00 0.00 0.00 4.37
5268 5900 1.004862 GTTTCCCTCCCTTTCTCCCAG 59.995 57.143 0.00 0.00 0.00 4.45
5269 5901 1.208165 TTCCCTCCCTTTCTCCCAGC 61.208 60.000 0.00 0.00 0.00 4.85
5270 5902 2.684499 CCCTCCCTTTCTCCCAGCC 61.684 68.421 0.00 0.00 0.00 4.85
5271 5903 2.586792 CTCCCTTTCTCCCAGCCG 59.413 66.667 0.00 0.00 0.00 5.52
5272 5904 3.689002 CTCCCTTTCTCCCAGCCGC 62.689 68.421 0.00 0.00 0.00 6.53
5273 5905 4.803908 CCCTTTCTCCCAGCCGCC 62.804 72.222 0.00 0.00 0.00 6.13
5274 5906 4.803908 CCTTTCTCCCAGCCGCCC 62.804 72.222 0.00 0.00 0.00 6.13
5275 5907 4.033776 CTTTCTCCCAGCCGCCCA 62.034 66.667 0.00 0.00 0.00 5.36
5276 5908 4.344865 TTTCTCCCAGCCGCCCAC 62.345 66.667 0.00 0.00 0.00 4.61
5279 5911 4.785453 CTCCCAGCCGCCCACTTC 62.785 72.222 0.00 0.00 0.00 3.01
5281 5913 4.351054 CCCAGCCGCCCACTTCTT 62.351 66.667 0.00 0.00 0.00 2.52
5282 5914 2.747855 CCAGCCGCCCACTTCTTC 60.748 66.667 0.00 0.00 0.00 2.87
5283 5915 2.348998 CAGCCGCCCACTTCTTCT 59.651 61.111 0.00 0.00 0.00 2.85
5284 5916 1.743252 CAGCCGCCCACTTCTTCTC 60.743 63.158 0.00 0.00 0.00 2.87
5285 5917 2.436824 GCCGCCCACTTCTTCTCC 60.437 66.667 0.00 0.00 0.00 3.71
5286 5918 2.269241 CCGCCCACTTCTTCTCCC 59.731 66.667 0.00 0.00 0.00 4.30
5287 5919 2.592993 CCGCCCACTTCTTCTCCCA 61.593 63.158 0.00 0.00 0.00 4.37
5288 5920 1.604378 CGCCCACTTCTTCTCCCAT 59.396 57.895 0.00 0.00 0.00 4.00
5289 5921 0.035056 CGCCCACTTCTTCTCCCATT 60.035 55.000 0.00 0.00 0.00 3.16
5290 5922 1.467920 GCCCACTTCTTCTCCCATTG 58.532 55.000 0.00 0.00 0.00 2.82
5291 5923 1.272147 GCCCACTTCTTCTCCCATTGT 60.272 52.381 0.00 0.00 0.00 2.71
5292 5924 2.819348 GCCCACTTCTTCTCCCATTGTT 60.819 50.000 0.00 0.00 0.00 2.83
5293 5925 3.084786 CCCACTTCTTCTCCCATTGTTC 58.915 50.000 0.00 0.00 0.00 3.18
5294 5926 3.245052 CCCACTTCTTCTCCCATTGTTCT 60.245 47.826 0.00 0.00 0.00 3.01
5295 5927 4.019321 CCCACTTCTTCTCCCATTGTTCTA 60.019 45.833 0.00 0.00 0.00 2.10
5296 5928 5.181748 CCACTTCTTCTCCCATTGTTCTAG 58.818 45.833 0.00 0.00 0.00 2.43
5297 5929 5.181748 CACTTCTTCTCCCATTGTTCTAGG 58.818 45.833 0.00 0.00 0.00 3.02
5298 5930 4.846940 ACTTCTTCTCCCATTGTTCTAGGT 59.153 41.667 0.00 0.00 0.00 3.08
5299 5931 5.310857 ACTTCTTCTCCCATTGTTCTAGGTT 59.689 40.000 0.00 0.00 0.00 3.50
5300 5932 5.422214 TCTTCTCCCATTGTTCTAGGTTC 57.578 43.478 0.00 0.00 0.00 3.62
5301 5933 3.887621 TCTCCCATTGTTCTAGGTTCG 57.112 47.619 0.00 0.00 0.00 3.95
5302 5934 2.500098 TCTCCCATTGTTCTAGGTTCGG 59.500 50.000 0.00 0.00 0.00 4.30
5303 5935 2.500098 CTCCCATTGTTCTAGGTTCGGA 59.500 50.000 0.00 0.00 0.00 4.55
5304 5936 2.500098 TCCCATTGTTCTAGGTTCGGAG 59.500 50.000 0.00 0.00 0.00 4.63
5305 5937 2.280628 CCATTGTTCTAGGTTCGGAGC 58.719 52.381 0.00 0.00 0.00 4.70
5306 5938 2.093447 CCATTGTTCTAGGTTCGGAGCT 60.093 50.000 0.00 0.00 37.40 4.09
5307 5939 3.190874 CATTGTTCTAGGTTCGGAGCTC 58.809 50.000 4.71 4.71 34.88 4.09
5308 5940 1.183549 TGTTCTAGGTTCGGAGCTCC 58.816 55.000 23.79 23.79 34.88 4.70
5309 5941 0.460722 GTTCTAGGTTCGGAGCTCCC 59.539 60.000 27.20 13.01 34.88 4.30
5319 5951 3.855853 GAGCTCCCGCCCCTTCTC 61.856 72.222 0.87 0.00 36.60 2.87
5325 5957 2.770048 CCGCCCCTTCTCCCAGAT 60.770 66.667 0.00 0.00 0.00 2.90
5326 5958 2.378634 CCGCCCCTTCTCCCAGATT 61.379 63.158 0.00 0.00 0.00 2.40
5327 5959 1.153086 CGCCCCTTCTCCCAGATTG 60.153 63.158 0.00 0.00 0.00 2.67
5328 5960 1.915078 CGCCCCTTCTCCCAGATTGT 61.915 60.000 0.00 0.00 0.00 2.71
5329 5961 0.332972 GCCCCTTCTCCCAGATTGTT 59.667 55.000 0.00 0.00 0.00 2.83
5330 5962 1.564348 GCCCCTTCTCCCAGATTGTTA 59.436 52.381 0.00 0.00 0.00 2.41
5331 5963 2.175715 GCCCCTTCTCCCAGATTGTTAT 59.824 50.000 0.00 0.00 0.00 1.89
5332 5964 3.825328 CCCCTTCTCCCAGATTGTTATG 58.175 50.000 0.00 0.00 0.00 1.90
5333 5965 3.435601 CCCCTTCTCCCAGATTGTTATGG 60.436 52.174 0.00 0.00 36.27 2.74
5334 5966 3.203040 CCCTTCTCCCAGATTGTTATGGT 59.797 47.826 0.00 0.00 34.58 3.55
5335 5967 4.202441 CCTTCTCCCAGATTGTTATGGTG 58.798 47.826 0.00 0.00 34.58 4.17
5336 5968 3.281727 TCTCCCAGATTGTTATGGTGC 57.718 47.619 0.00 0.00 34.58 5.01
5337 5969 2.846206 TCTCCCAGATTGTTATGGTGCT 59.154 45.455 0.00 0.00 34.58 4.40
5338 5970 4.037222 TCTCCCAGATTGTTATGGTGCTA 58.963 43.478 0.00 0.00 34.58 3.49
5339 5971 4.130118 CTCCCAGATTGTTATGGTGCTAC 58.870 47.826 0.00 0.00 34.58 3.58
5340 5972 3.780294 TCCCAGATTGTTATGGTGCTACT 59.220 43.478 0.00 0.00 34.58 2.57
5341 5973 3.879295 CCCAGATTGTTATGGTGCTACTG 59.121 47.826 0.00 0.00 34.58 2.74
5342 5974 3.879295 CCAGATTGTTATGGTGCTACTGG 59.121 47.826 0.00 0.00 36.83 4.00
5343 5975 3.313526 CAGATTGTTATGGTGCTACTGGC 59.686 47.826 0.00 0.00 42.22 4.85
5344 5976 3.200825 AGATTGTTATGGTGCTACTGGCT 59.799 43.478 0.00 0.00 42.39 4.75
5345 5977 2.401583 TGTTATGGTGCTACTGGCTG 57.598 50.000 0.00 0.00 42.39 4.85
5346 5978 1.065491 TGTTATGGTGCTACTGGCTGG 60.065 52.381 0.00 0.00 42.39 4.85
5347 5979 0.107214 TTATGGTGCTACTGGCTGGC 60.107 55.000 0.00 0.00 42.39 4.85
5348 5980 0.982852 TATGGTGCTACTGGCTGGCT 60.983 55.000 2.00 0.00 42.39 4.75
5349 5981 0.982852 ATGGTGCTACTGGCTGGCTA 60.983 55.000 2.00 0.00 42.39 3.93
5350 5982 0.982852 TGGTGCTACTGGCTGGCTAT 60.983 55.000 2.00 0.00 42.39 2.97
5351 5983 1.048601 GGTGCTACTGGCTGGCTATA 58.951 55.000 2.00 0.00 42.39 1.31
5352 5984 1.625818 GGTGCTACTGGCTGGCTATAT 59.374 52.381 2.00 0.00 42.39 0.86
5353 5985 2.354203 GGTGCTACTGGCTGGCTATATC 60.354 54.545 2.00 0.00 42.39 1.63
5354 5986 2.300152 GTGCTACTGGCTGGCTATATCA 59.700 50.000 2.00 0.00 42.39 2.15
5355 5987 2.564504 TGCTACTGGCTGGCTATATCAG 59.435 50.000 2.00 0.00 42.39 2.90
5372 6004 3.194719 GCATTGCTGCTCTGTCCC 58.805 61.111 0.16 0.00 45.32 4.46
5373 6005 2.413142 GCATTGCTGCTCTGTCCCC 61.413 63.158 0.16 0.00 45.32 4.81
5374 6006 1.302285 CATTGCTGCTCTGTCCCCT 59.698 57.895 0.00 0.00 0.00 4.79
5375 6007 0.747283 CATTGCTGCTCTGTCCCCTC 60.747 60.000 0.00 0.00 0.00 4.30
5376 6008 1.919600 ATTGCTGCTCTGTCCCCTCC 61.920 60.000 0.00 0.00 0.00 4.30
5377 6009 2.686835 GCTGCTCTGTCCCCTCCT 60.687 66.667 0.00 0.00 0.00 3.69
5378 6010 2.730524 GCTGCTCTGTCCCCTCCTC 61.731 68.421 0.00 0.00 0.00 3.71
5379 6011 1.001503 CTGCTCTGTCCCCTCCTCT 59.998 63.158 0.00 0.00 0.00 3.69
5380 6012 1.305633 TGCTCTGTCCCCTCCTCTG 60.306 63.158 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.600957 CTTTAGAGCCATGGACGCATG 59.399 52.381 18.40 0.00 0.00 4.06
4 5 1.959042 CTTTAGAGCCATGGACGCAT 58.041 50.000 18.40 0.00 0.00 4.73
5 6 0.744414 GCTTTAGAGCCATGGACGCA 60.744 55.000 18.40 0.00 43.29 5.24
6 7 1.766143 CGCTTTAGAGCCATGGACGC 61.766 60.000 18.40 8.91 46.42 5.19
7 8 1.766143 GCGCTTTAGAGCCATGGACG 61.766 60.000 18.40 6.23 46.42 4.79
8 9 0.462759 AGCGCTTTAGAGCCATGGAC 60.463 55.000 18.40 8.70 46.42 4.02
9 10 0.462581 CAGCGCTTTAGAGCCATGGA 60.463 55.000 18.40 0.00 46.42 3.41
10 11 0.462581 TCAGCGCTTTAGAGCCATGG 60.463 55.000 7.50 7.63 46.42 3.66
11 12 1.329906 CTTCAGCGCTTTAGAGCCATG 59.670 52.381 7.50 0.00 46.42 3.66
12 13 1.208052 TCTTCAGCGCTTTAGAGCCAT 59.792 47.619 7.50 0.00 46.42 4.40
13 14 0.608130 TCTTCAGCGCTTTAGAGCCA 59.392 50.000 7.50 0.00 46.42 4.75
14 15 1.003108 GTCTTCAGCGCTTTAGAGCC 58.997 55.000 7.50 0.00 46.42 4.70
15 16 0.642800 CGTCTTCAGCGCTTTAGAGC 59.357 55.000 7.50 7.48 45.65 4.09
16 17 2.181205 CTCGTCTTCAGCGCTTTAGAG 58.819 52.381 7.50 7.43 0.00 2.43
17 18 1.135373 CCTCGTCTTCAGCGCTTTAGA 60.135 52.381 7.50 11.00 0.00 2.10
18 19 1.272781 CCTCGTCTTCAGCGCTTTAG 58.727 55.000 7.50 8.37 0.00 1.85
19 20 0.601558 ACCTCGTCTTCAGCGCTTTA 59.398 50.000 7.50 0.00 0.00 1.85
20 21 0.249911 AACCTCGTCTTCAGCGCTTT 60.250 50.000 7.50 0.00 0.00 3.51
21 22 0.601558 TAACCTCGTCTTCAGCGCTT 59.398 50.000 7.50 0.00 0.00 4.68
22 23 0.171455 CTAACCTCGTCTTCAGCGCT 59.829 55.000 2.64 2.64 0.00 5.92
23 24 0.170561 TCTAACCTCGTCTTCAGCGC 59.829 55.000 0.00 0.00 0.00 5.92
24 25 2.722071 GATCTAACCTCGTCTTCAGCG 58.278 52.381 0.00 0.00 0.00 5.18
25 26 2.355132 TCGATCTAACCTCGTCTTCAGC 59.645 50.000 0.00 0.00 37.40 4.26
26 27 3.544440 CGTCGATCTAACCTCGTCTTCAG 60.544 52.174 0.00 0.00 37.40 3.02
27 28 2.350804 CGTCGATCTAACCTCGTCTTCA 59.649 50.000 0.00 0.00 37.40 3.02
28 29 2.286301 CCGTCGATCTAACCTCGTCTTC 60.286 54.545 0.00 0.00 37.40 2.87
29 30 1.669779 CCGTCGATCTAACCTCGTCTT 59.330 52.381 0.00 0.00 37.40 3.01
30 31 1.297664 CCGTCGATCTAACCTCGTCT 58.702 55.000 0.00 0.00 37.40 4.18
31 32 0.316854 GCCGTCGATCTAACCTCGTC 60.317 60.000 0.00 0.00 37.40 4.20
32 33 1.726265 GCCGTCGATCTAACCTCGT 59.274 57.895 0.00 0.00 37.40 4.18
33 34 1.368969 CGCCGTCGATCTAACCTCG 60.369 63.158 0.00 0.00 38.10 4.63
34 35 2.020131 TCGCCGTCGATCTAACCTC 58.980 57.895 0.00 0.00 40.21 3.85
35 36 4.230603 TCGCCGTCGATCTAACCT 57.769 55.556 0.00 0.00 40.21 3.50
48 49 4.477975 CCTCTCGTCGGTGTCGCC 62.478 72.222 0.00 0.00 36.13 5.54
50 51 4.813526 CGCCTCTCGTCGGTGTCG 62.814 72.222 0.00 0.00 37.82 4.35
51 52 3.384014 CTCGCCTCTCGTCGGTGTC 62.384 68.421 0.00 0.00 39.67 3.67
52 53 3.432588 CTCGCCTCTCGTCGGTGT 61.433 66.667 0.00 0.00 39.67 4.16
53 54 2.196382 TTTCTCGCCTCTCGTCGGTG 62.196 60.000 0.00 0.00 39.67 4.94
54 55 1.521450 TTTTCTCGCCTCTCGTCGGT 61.521 55.000 0.00 0.00 39.67 4.69
55 56 0.179134 ATTTTCTCGCCTCTCGTCGG 60.179 55.000 0.00 0.00 39.67 4.79
56 57 1.192793 GATTTTCTCGCCTCTCGTCG 58.807 55.000 0.00 0.00 39.67 5.12
57 58 1.135333 AGGATTTTCTCGCCTCTCGTC 59.865 52.381 0.00 0.00 39.67 4.20
58 59 1.187087 AGGATTTTCTCGCCTCTCGT 58.813 50.000 0.00 0.00 39.67 4.18
59 60 2.359531 ACTAGGATTTTCTCGCCTCTCG 59.640 50.000 0.00 0.00 40.15 4.04
60 61 3.549221 CGACTAGGATTTTCTCGCCTCTC 60.549 52.174 0.00 0.00 33.28 3.20
61 62 2.359531 CGACTAGGATTTTCTCGCCTCT 59.640 50.000 0.00 0.00 33.28 3.69
62 63 2.544069 CCGACTAGGATTTTCTCGCCTC 60.544 54.545 0.00 0.00 45.00 4.70
63 64 1.409427 CCGACTAGGATTTTCTCGCCT 59.591 52.381 0.00 0.00 45.00 5.52
64 65 1.854227 CCGACTAGGATTTTCTCGCC 58.146 55.000 0.00 0.00 45.00 5.54
65 66 1.202428 AGCCGACTAGGATTTTCTCGC 60.202 52.381 0.00 0.00 45.00 5.03
66 67 2.873133 AGCCGACTAGGATTTTCTCG 57.127 50.000 0.00 0.00 45.00 4.04
73 74 1.403687 GCCTCCAAGCCGACTAGGAT 61.404 60.000 0.00 0.00 45.00 3.24
74 75 2.058595 GCCTCCAAGCCGACTAGGA 61.059 63.158 0.00 0.00 45.00 2.94
75 76 2.501610 GCCTCCAAGCCGACTAGG 59.498 66.667 0.00 0.00 44.97 3.02
76 77 2.105128 CGCCTCCAAGCCGACTAG 59.895 66.667 0.00 0.00 0.00 2.57
77 78 4.143333 GCGCCTCCAAGCCGACTA 62.143 66.667 0.00 0.00 0.00 2.59
83 84 3.050275 AAACGAGCGCCTCCAAGC 61.050 61.111 2.29 0.00 0.00 4.01
84 85 1.630244 CTCAAACGAGCGCCTCCAAG 61.630 60.000 2.29 0.00 0.00 3.61
85 86 1.667830 CTCAAACGAGCGCCTCCAA 60.668 57.895 2.29 0.00 0.00 3.53
86 87 1.529152 TACTCAAACGAGCGCCTCCA 61.529 55.000 2.29 0.00 33.49 3.86
87 88 0.179108 ATACTCAAACGAGCGCCTCC 60.179 55.000 2.29 0.00 33.49 4.30
88 89 0.924090 CATACTCAAACGAGCGCCTC 59.076 55.000 2.29 0.00 33.49 4.70
89 90 0.530744 TCATACTCAAACGAGCGCCT 59.469 50.000 2.29 0.00 33.49 5.52
90 91 0.924090 CTCATACTCAAACGAGCGCC 59.076 55.000 2.29 0.00 33.49 6.53
91 92 1.630148 ACTCATACTCAAACGAGCGC 58.370 50.000 0.00 0.00 33.49 5.92
92 93 4.647291 AAAACTCATACTCAAACGAGCG 57.353 40.909 0.00 0.00 33.49 5.03
115 116 8.574627 CGTCTACGTTTGTATTATCGTGTTTAA 58.425 33.333 0.00 0.00 37.66 1.52
116 117 7.253288 GCGTCTACGTTTGTATTATCGTGTTTA 60.253 37.037 0.00 0.00 42.22 2.01
117 118 6.452872 GCGTCTACGTTTGTATTATCGTGTTT 60.453 38.462 0.00 0.00 42.22 2.83
118 119 5.003778 GCGTCTACGTTTGTATTATCGTGTT 59.996 40.000 0.00 0.00 42.22 3.32
119 120 4.496895 GCGTCTACGTTTGTATTATCGTGT 59.503 41.667 0.00 0.00 42.22 4.49
120 121 4.731961 AGCGTCTACGTTTGTATTATCGTG 59.268 41.667 0.00 0.00 42.22 4.35
121 122 4.913376 AGCGTCTACGTTTGTATTATCGT 58.087 39.130 0.00 0.00 42.22 3.73
122 123 4.378030 GGAGCGTCTACGTTTGTATTATCG 59.622 45.833 0.00 0.00 42.22 2.92
123 124 4.378030 CGGAGCGTCTACGTTTGTATTATC 59.622 45.833 0.00 0.00 42.22 1.75
124 125 4.285292 CGGAGCGTCTACGTTTGTATTAT 58.715 43.478 0.00 0.00 42.22 1.28
125 126 3.683989 CGGAGCGTCTACGTTTGTATTA 58.316 45.455 0.00 0.00 42.22 0.98
126 127 2.523015 CGGAGCGTCTACGTTTGTATT 58.477 47.619 0.00 0.00 42.22 1.89
127 128 2.184385 CGGAGCGTCTACGTTTGTAT 57.816 50.000 0.00 0.00 42.22 2.29
128 129 3.681705 CGGAGCGTCTACGTTTGTA 57.318 52.632 0.00 0.00 42.22 2.41
129 130 4.546637 CGGAGCGTCTACGTTTGT 57.453 55.556 0.00 0.00 42.22 2.83
151 152 2.563261 ATGTGCTCATAGATGCAGGG 57.437 50.000 0.00 0.00 40.06 4.45
153 154 3.387397 TCGAATGTGCTCATAGATGCAG 58.613 45.455 0.93 0.00 40.06 4.41
158 159 4.036144 CAGTCTCTCGAATGTGCTCATAGA 59.964 45.833 0.93 4.47 33.49 1.98
161 162 2.757314 TCAGTCTCTCGAATGTGCTCAT 59.243 45.455 0.00 0.00 36.65 2.90
185 186 5.055144 CCGTCAATCTCAAGATGATGTGAT 58.945 41.667 0.00 0.00 35.63 3.06
186 187 4.160252 TCCGTCAATCTCAAGATGATGTGA 59.840 41.667 0.00 0.00 34.49 3.58
208 209 3.997681 GCAGGGTTCAAGTTCTAGACTTC 59.002 47.826 0.00 0.00 45.40 3.01
213 214 2.616510 CCAGGCAGGGTTCAAGTTCTAG 60.617 54.545 0.00 0.00 0.00 2.43
216 217 2.646121 CCAGGCAGGGTTCAAGTTC 58.354 57.895 0.00 0.00 0.00 3.01
230 231 0.681733 CATCGGTATCCTCACCCAGG 59.318 60.000 0.00 0.00 45.15 4.45
231 232 1.341531 GACATCGGTATCCTCACCCAG 59.658 57.143 0.00 0.00 34.90 4.45
232 233 1.063190 AGACATCGGTATCCTCACCCA 60.063 52.381 0.00 0.00 34.90 4.51
235 236 2.959707 AGGAAGACATCGGTATCCTCAC 59.040 50.000 0.00 0.00 38.44 3.51
238 239 7.896496 AGATAATTAGGAAGACATCGGTATCCT 59.104 37.037 0.00 0.00 42.78 3.24
242 243 8.800332 GGTTAGATAATTAGGAAGACATCGGTA 58.200 37.037 0.00 0.00 0.00 4.02
243 244 7.523380 CGGTTAGATAATTAGGAAGACATCGGT 60.523 40.741 0.00 0.00 0.00 4.69
244 245 6.807230 CGGTTAGATAATTAGGAAGACATCGG 59.193 42.308 0.00 0.00 0.00 4.18
245 246 6.308282 GCGGTTAGATAATTAGGAAGACATCG 59.692 42.308 0.00 0.00 0.00 3.84
246 247 7.152645 TGCGGTTAGATAATTAGGAAGACATC 58.847 38.462 0.00 0.00 0.00 3.06
247 248 7.062749 TGCGGTTAGATAATTAGGAAGACAT 57.937 36.000 0.00 0.00 0.00 3.06
248 249 6.462487 CCTGCGGTTAGATAATTAGGAAGACA 60.462 42.308 0.00 0.00 0.00 3.41
249 250 5.927115 CCTGCGGTTAGATAATTAGGAAGAC 59.073 44.000 0.00 0.00 0.00 3.01
250 251 5.601313 ACCTGCGGTTAGATAATTAGGAAGA 59.399 40.000 0.00 0.00 27.29 2.87
251 252 5.855045 ACCTGCGGTTAGATAATTAGGAAG 58.145 41.667 0.00 0.00 27.29 3.46
252 253 5.881923 ACCTGCGGTTAGATAATTAGGAA 57.118 39.130 0.00 0.00 27.29 3.36
253 254 5.454187 CCAACCTGCGGTTAGATAATTAGGA 60.454 44.000 11.71 0.00 45.01 2.94
254 255 4.755123 CCAACCTGCGGTTAGATAATTAGG 59.245 45.833 11.71 3.82 45.01 2.69
255 256 5.365619 ACCAACCTGCGGTTAGATAATTAG 58.634 41.667 11.71 0.00 45.01 1.73
256 257 5.362105 ACCAACCTGCGGTTAGATAATTA 57.638 39.130 11.71 0.00 45.01 1.40
257 258 4.230745 ACCAACCTGCGGTTAGATAATT 57.769 40.909 11.71 0.00 45.01 1.40
258 259 3.926058 ACCAACCTGCGGTTAGATAAT 57.074 42.857 11.71 0.00 45.01 1.28
259 260 3.706600 AACCAACCTGCGGTTAGATAA 57.293 42.857 11.71 0.00 45.01 1.75
260 261 3.706600 AAACCAACCTGCGGTTAGATA 57.293 42.857 11.71 0.00 45.01 1.98
261 262 2.579410 AAACCAACCTGCGGTTAGAT 57.421 45.000 11.71 0.00 45.01 1.98
262 263 2.769893 GTAAACCAACCTGCGGTTAGA 58.230 47.619 11.71 0.00 45.01 2.10
263 264 1.461897 CGTAAACCAACCTGCGGTTAG 59.538 52.381 11.71 8.14 45.01 2.34
264 265 1.202627 ACGTAAACCAACCTGCGGTTA 60.203 47.619 11.71 0.00 45.01 2.85
266 267 1.146707 ACGTAAACCAACCTGCGGT 59.853 52.632 0.00 0.00 38.85 5.68
267 268 1.161563 ACACGTAAACCAACCTGCGG 61.162 55.000 0.00 0.00 0.00 5.69
268 269 0.041663 CACACGTAAACCAACCTGCG 60.042 55.000 0.00 0.00 0.00 5.18
269 270 1.003223 GTCACACGTAAACCAACCTGC 60.003 52.381 0.00 0.00 0.00 4.85
270 271 2.557317 AGTCACACGTAAACCAACCTG 58.443 47.619 0.00 0.00 0.00 4.00
271 272 2.994186 AGTCACACGTAAACCAACCT 57.006 45.000 0.00 0.00 0.00 3.50
272 273 4.324402 CGTATAGTCACACGTAAACCAACC 59.676 45.833 0.00 0.00 33.56 3.77
273 274 5.153513 TCGTATAGTCACACGTAAACCAAC 58.846 41.667 0.00 0.00 39.18 3.77
274 275 5.048782 ACTCGTATAGTCACACGTAAACCAA 60.049 40.000 0.00 0.00 39.18 3.67
275 276 4.455533 ACTCGTATAGTCACACGTAAACCA 59.544 41.667 0.00 0.00 39.18 3.67
276 277 4.974591 ACTCGTATAGTCACACGTAAACC 58.025 43.478 0.00 0.00 39.18 3.27
277 278 7.237173 ACTAACTCGTATAGTCACACGTAAAC 58.763 38.462 0.00 0.00 37.50 2.01
278 279 7.364522 ACTAACTCGTATAGTCACACGTAAA 57.635 36.000 0.00 0.00 37.50 2.01
279 280 6.968131 ACTAACTCGTATAGTCACACGTAA 57.032 37.500 0.00 0.00 37.50 3.18
280 281 6.575083 GACTAACTCGTATAGTCACACGTA 57.425 41.667 15.28 0.00 45.52 3.57
281 282 5.462034 GACTAACTCGTATAGTCACACGT 57.538 43.478 15.28 0.00 45.52 4.49
295 296 5.948992 AATTTGAGCCAACAGACTAACTC 57.051 39.130 0.00 0.00 0.00 3.01
362 416 2.192979 GCCCATCAATCCTCGCCA 59.807 61.111 0.00 0.00 0.00 5.69
365 419 0.178767 TGTCTGCCCATCAATCCTCG 59.821 55.000 0.00 0.00 0.00 4.63
366 420 2.425143 TTGTCTGCCCATCAATCCTC 57.575 50.000 0.00 0.00 0.00 3.71
367 421 2.731572 CTTTGTCTGCCCATCAATCCT 58.268 47.619 0.00 0.00 0.00 3.24
426 481 8.512966 TTTTTATCCCTTTTTCAACCCTTTTG 57.487 30.769 0.00 0.00 0.00 2.44
452 507 7.189512 GCGATGTATTTATGCTTCTCTTTTGT 58.810 34.615 0.00 0.00 0.00 2.83
503 558 2.077687 ATACCGTGGTAGGGGTACAG 57.922 55.000 4.87 0.00 41.33 2.74
504 559 2.752829 GCTATACCGTGGTAGGGGTACA 60.753 54.545 4.87 0.00 41.33 2.90
505 560 1.889170 GCTATACCGTGGTAGGGGTAC 59.111 57.143 4.87 0.00 41.33 3.34
516 575 1.458967 GGGTGGGGAGCTATACCGT 60.459 63.158 0.00 0.00 34.01 4.83
1755 1870 3.306166 ACCGAAAATCTAAGCATCGAACG 59.694 43.478 0.00 0.00 35.65 3.95
1762 1877 2.489938 AGGCACCGAAAATCTAAGCA 57.510 45.000 0.00 0.00 0.00 3.91
2057 2234 9.739276 TTAGTACAACATGATTTTCCTCTTCAT 57.261 29.630 0.00 0.00 0.00 2.57
2058 2235 8.999431 GTTAGTACAACATGATTTTCCTCTTCA 58.001 33.333 0.00 0.00 0.00 3.02
2059 2236 9.220767 AGTTAGTACAACATGATTTTCCTCTTC 57.779 33.333 0.00 0.00 0.00 2.87
2296 2506 1.425066 TGGATGAGGGACTGTGCTTTT 59.575 47.619 0.00 0.00 41.55 2.27
2306 2516 3.845992 TCTTGTTTCTGATGGATGAGGGA 59.154 43.478 0.00 0.00 0.00 4.20
2571 2790 5.819901 CCTCAGAAATCTCTTCCATGTTACC 59.180 44.000 0.00 0.00 0.00 2.85
2572 2791 6.410540 ACCTCAGAAATCTCTTCCATGTTAC 58.589 40.000 0.00 0.00 0.00 2.50
2573 2792 6.627087 ACCTCAGAAATCTCTTCCATGTTA 57.373 37.500 0.00 0.00 0.00 2.41
2616 2865 4.411013 TCATCTTTGAGACCTGACTGAGA 58.589 43.478 0.00 0.00 0.00 3.27
2716 2965 8.776376 ATAATGTCCAACATAAAAAGGCAAAG 57.224 30.769 0.00 0.00 37.97 2.77
2750 2999 8.910351 AGCTTATGGTCCTAATTGAATAGAAC 57.090 34.615 0.00 0.00 0.00 3.01
2761 3160 7.556275 CCTTAACATGAAAGCTTATGGTCCTAA 59.444 37.037 12.68 0.00 0.00 2.69
2773 3172 4.519540 TTCTTGCCCTTAACATGAAAGC 57.480 40.909 0.00 0.00 30.80 3.51
2911 3318 1.208293 AGCGTTTTCAAAGGGCCAAAA 59.792 42.857 6.18 0.06 0.00 2.44
2917 3324 0.102120 TGTGCAGCGTTTTCAAAGGG 59.898 50.000 0.00 0.00 0.00 3.95
2929 3336 2.664916 CCATGTGTAAAGTTGTGCAGC 58.335 47.619 0.00 0.00 0.00 5.25
2935 3342 4.805192 GCCATATTGCCATGTGTAAAGTTG 59.195 41.667 0.00 0.00 0.00 3.16
3108 3515 5.465390 CACCACCGACACAAATATATCGATT 59.535 40.000 1.71 0.00 36.70 3.34
3125 3532 2.642254 TACCCTCTTCGCACCACCG 61.642 63.158 0.00 0.00 0.00 4.94
3342 3917 3.767673 AGGCTTGCAGACATCAAATGATT 59.232 39.130 0.00 0.00 31.21 2.57
3347 3922 5.500234 AGTATAAGGCTTGCAGACATCAAA 58.500 37.500 10.69 0.00 0.00 2.69
3353 3928 3.828875 AGGAGTATAAGGCTTGCAGAC 57.171 47.619 10.69 0.00 0.00 3.51
3394 3975 6.043411 GTCAGGTGAGTTACTGCTTATAAGG 58.957 44.000 14.28 1.18 34.76 2.69
3715 4296 1.356124 AAGAAGCTCTGCTCCCTTCA 58.644 50.000 0.00 0.00 38.25 3.02
3838 4419 0.396278 CCAAATCCTTCCTCCTGCCC 60.396 60.000 0.00 0.00 0.00 5.36
3993 4575 7.422399 ACAACTTTTACGCTGATGTGTAATTT 58.578 30.769 3.54 0.00 45.11 1.82
4006 4588 5.922544 TGTAAGAGAGGTACAACTTTTACGC 59.077 40.000 17.90 5.67 37.38 4.42
4419 5004 5.242069 TCGATGCTTATATGCTCTAGCTC 57.758 43.478 11.48 0.00 42.66 4.09
4570 5155 5.755409 TCTACTTCAGACTTAATGCCCAA 57.245 39.130 0.00 0.00 0.00 4.12
4605 5190 2.351244 CCGAGTGAGGGTGCAGCTA 61.351 63.158 16.65 0.00 0.00 3.32
4621 5206 0.951558 CCACTGTTTCTTCAACCCCG 59.048 55.000 0.00 0.00 33.97 5.73
4633 5218 1.835927 GAGGAGCCTCAGCCACTGTT 61.836 60.000 11.58 0.00 42.31 3.16
4745 5339 6.238484 GCATTCTTACACGAAATTAGCCATCT 60.238 38.462 0.00 0.00 0.00 2.90
4746 5340 5.909610 GCATTCTTACACGAAATTAGCCATC 59.090 40.000 0.00 0.00 0.00 3.51
4844 5471 1.231958 TGAAACAACGGTGGATCGCC 61.232 55.000 4.97 0.00 0.00 5.54
4846 5473 0.796312 CCTGAAACAACGGTGGATCG 59.204 55.000 4.97 0.00 0.00 3.69
4874 5502 1.703438 CTGCCATCTCGTGAAGCTGC 61.703 60.000 12.29 0.00 0.00 5.25
4900 5528 4.550639 GCGCCTCAAAAACAAAAATCACTG 60.551 41.667 0.00 0.00 0.00 3.66
4901 5529 3.555547 GCGCCTCAAAAACAAAAATCACT 59.444 39.130 0.00 0.00 0.00 3.41
4902 5530 3.303066 GGCGCCTCAAAAACAAAAATCAC 60.303 43.478 22.15 0.00 0.00 3.06
4903 5531 2.869192 GGCGCCTCAAAAACAAAAATCA 59.131 40.909 22.15 0.00 0.00 2.57
4904 5532 2.223144 GGGCGCCTCAAAAACAAAAATC 59.777 45.455 28.56 0.00 0.00 2.17
4905 5533 2.217750 GGGCGCCTCAAAAACAAAAAT 58.782 42.857 28.56 0.00 0.00 1.82
4906 5534 1.066143 TGGGCGCCTCAAAAACAAAAA 60.066 42.857 28.56 0.00 0.00 1.94
4907 5535 0.537188 TGGGCGCCTCAAAAACAAAA 59.463 45.000 28.56 0.00 0.00 2.44
4908 5536 0.103937 CTGGGCGCCTCAAAAACAAA 59.896 50.000 28.56 0.00 0.00 2.83
4909 5537 1.040339 ACTGGGCGCCTCAAAAACAA 61.040 50.000 28.56 0.00 0.00 2.83
4910 5538 1.454847 ACTGGGCGCCTCAAAAACA 60.455 52.632 28.56 12.95 0.00 2.83
4911 5539 1.007387 CACTGGGCGCCTCAAAAAC 60.007 57.895 28.56 8.18 0.00 2.43
4912 5540 0.539438 ATCACTGGGCGCCTCAAAAA 60.539 50.000 28.56 8.44 0.00 1.94
4913 5541 0.539438 AATCACTGGGCGCCTCAAAA 60.539 50.000 28.56 10.21 0.00 2.44
4914 5542 0.539438 AAATCACTGGGCGCCTCAAA 60.539 50.000 28.56 9.02 0.00 2.69
4915 5543 0.539438 AAAATCACTGGGCGCCTCAA 60.539 50.000 28.56 11.71 0.00 3.02
4916 5544 1.074775 AAAATCACTGGGCGCCTCA 59.925 52.632 28.56 21.07 0.00 3.86
4917 5545 1.508088 CAAAATCACTGGGCGCCTC 59.492 57.895 28.56 17.27 0.00 4.70
4918 5546 1.978617 CCAAAATCACTGGGCGCCT 60.979 57.895 28.56 2.77 0.00 5.52
4919 5547 1.815817 AACCAAAATCACTGGGCGCC 61.816 55.000 21.18 21.18 38.36 6.53
4920 5548 0.667184 CAACCAAAATCACTGGGCGC 60.667 55.000 0.00 0.00 38.36 6.53
4921 5549 0.673437 ACAACCAAAATCACTGGGCG 59.327 50.000 0.00 0.00 38.36 6.13
4922 5550 1.412343 ACACAACCAAAATCACTGGGC 59.588 47.619 0.00 0.00 38.36 5.36
4923 5551 3.817709 AACACAACCAAAATCACTGGG 57.182 42.857 0.00 0.00 38.36 4.45
4924 5552 5.514274 AGTAACACAACCAAAATCACTGG 57.486 39.130 0.00 0.00 40.05 4.00
4925 5553 6.329496 ACAAGTAACACAACCAAAATCACTG 58.671 36.000 0.00 0.00 0.00 3.66
4926 5554 6.524101 ACAAGTAACACAACCAAAATCACT 57.476 33.333 0.00 0.00 0.00 3.41
4929 5557 9.522804 TTGATAACAAGTAACACAACCAAAATC 57.477 29.630 0.00 0.00 0.00 2.17
4980 5611 2.440409 CCACACTTGGGAATTCAGAGG 58.560 52.381 7.93 0.00 39.57 3.69
4983 5614 1.270550 GTGCCACACTTGGGAATTCAG 59.729 52.381 7.93 0.00 46.42 3.02
5011 5643 1.098050 GCTAATTGTGGAGGCAGTGG 58.902 55.000 0.00 0.00 0.00 4.00
5024 5656 7.275920 CCTCCACTCTACTTACAATGCTAATT 58.724 38.462 0.00 0.00 0.00 1.40
5036 5668 0.492276 ACACCCCCTCCACTCTACTT 59.508 55.000 0.00 0.00 0.00 2.24
5058 5690 3.512033 AGCGTGTGTTTGCCTTAAAAA 57.488 38.095 0.00 0.00 0.00 1.94
5059 5691 4.634184 TTAGCGTGTGTTTGCCTTAAAA 57.366 36.364 0.00 0.00 0.00 1.52
5060 5692 4.839668 ATTAGCGTGTGTTTGCCTTAAA 57.160 36.364 0.00 0.00 0.00 1.52
5061 5693 4.839668 AATTAGCGTGTGTTTGCCTTAA 57.160 36.364 0.00 0.00 0.00 1.85
5062 5694 4.839668 AAATTAGCGTGTGTTTGCCTTA 57.160 36.364 0.00 0.00 0.00 2.69
5063 5695 3.726291 AAATTAGCGTGTGTTTGCCTT 57.274 38.095 0.00 0.00 0.00 4.35
5064 5696 3.726291 AAAATTAGCGTGTGTTTGCCT 57.274 38.095 0.00 0.00 0.00 4.75
5065 5697 4.561213 GGATAAAATTAGCGTGTGTTTGCC 59.439 41.667 0.00 0.00 0.00 4.52
5066 5698 5.157781 TGGATAAAATTAGCGTGTGTTTGC 58.842 37.500 0.00 0.00 0.00 3.68
5067 5699 5.799936 CCTGGATAAAATTAGCGTGTGTTTG 59.200 40.000 0.00 0.00 0.00 2.93
5068 5700 5.105917 CCCTGGATAAAATTAGCGTGTGTTT 60.106 40.000 0.00 0.00 0.00 2.83
5069 5701 4.398044 CCCTGGATAAAATTAGCGTGTGTT 59.602 41.667 0.00 0.00 0.00 3.32
5070 5702 3.945285 CCCTGGATAAAATTAGCGTGTGT 59.055 43.478 0.00 0.00 0.00 3.72
5071 5703 3.315191 CCCCTGGATAAAATTAGCGTGTG 59.685 47.826 0.00 0.00 0.00 3.82
5072 5704 3.053917 ACCCCTGGATAAAATTAGCGTGT 60.054 43.478 0.00 0.00 0.00 4.49
5073 5705 3.551846 ACCCCTGGATAAAATTAGCGTG 58.448 45.455 0.00 0.00 0.00 5.34
5074 5706 3.945640 ACCCCTGGATAAAATTAGCGT 57.054 42.857 0.00 0.00 0.00 5.07
5075 5707 5.127491 TGTTACCCCTGGATAAAATTAGCG 58.873 41.667 0.00 0.00 0.00 4.26
5076 5708 7.069455 ACATTGTTACCCCTGGATAAAATTAGC 59.931 37.037 0.00 0.00 0.00 3.09
5077 5709 8.533569 ACATTGTTACCCCTGGATAAAATTAG 57.466 34.615 0.00 0.00 0.00 1.73
5078 5710 8.903059 AACATTGTTACCCCTGGATAAAATTA 57.097 30.769 0.00 0.00 0.00 1.40
5079 5711 7.806680 AACATTGTTACCCCTGGATAAAATT 57.193 32.000 0.00 0.00 0.00 1.82
5080 5712 7.806680 AAACATTGTTACCCCTGGATAAAAT 57.193 32.000 1.76 0.00 0.00 1.82
5081 5713 7.728981 TGTAAACATTGTTACCCCTGGATAAAA 59.271 33.333 1.76 0.00 33.76 1.52
5082 5714 7.239438 TGTAAACATTGTTACCCCTGGATAAA 58.761 34.615 1.76 0.00 33.76 1.40
5083 5715 6.791371 TGTAAACATTGTTACCCCTGGATAA 58.209 36.000 1.76 0.00 33.76 1.75
5084 5716 6.012333 ACTGTAAACATTGTTACCCCTGGATA 60.012 38.462 1.76 0.00 33.76 2.59
5085 5717 5.222254 ACTGTAAACATTGTTACCCCTGGAT 60.222 40.000 1.76 0.00 33.76 3.41
5086 5718 4.105057 ACTGTAAACATTGTTACCCCTGGA 59.895 41.667 1.76 0.00 33.76 3.86
5087 5719 4.403734 ACTGTAAACATTGTTACCCCTGG 58.596 43.478 1.76 0.00 33.76 4.45
5088 5720 5.067273 TGACTGTAAACATTGTTACCCCTG 58.933 41.667 1.76 0.00 33.76 4.45
5089 5721 5.313280 TGACTGTAAACATTGTTACCCCT 57.687 39.130 1.76 0.00 33.76 4.79
5090 5722 7.148137 CCTTATGACTGTAAACATTGTTACCCC 60.148 40.741 1.76 0.00 33.76 4.95
5091 5723 7.608761 TCCTTATGACTGTAAACATTGTTACCC 59.391 37.037 1.76 0.00 33.76 3.69
5092 5724 8.556213 TCCTTATGACTGTAAACATTGTTACC 57.444 34.615 1.76 0.00 33.76 2.85
5095 5727 8.784043 GTCTTCCTTATGACTGTAAACATTGTT 58.216 33.333 0.00 0.00 0.00 2.83
5096 5728 8.157476 AGTCTTCCTTATGACTGTAAACATTGT 58.843 33.333 0.00 0.00 41.40 2.71
5097 5729 8.553459 AGTCTTCCTTATGACTGTAAACATTG 57.447 34.615 0.00 0.00 41.40 2.82
5098 5730 8.375506 TGAGTCTTCCTTATGACTGTAAACATT 58.624 33.333 0.09 0.00 42.79 2.71
5099 5731 7.907389 TGAGTCTTCCTTATGACTGTAAACAT 58.093 34.615 0.09 0.00 42.79 2.71
5100 5732 7.297936 TGAGTCTTCCTTATGACTGTAAACA 57.702 36.000 0.09 0.00 42.79 2.83
5101 5733 7.117956 GGTTGAGTCTTCCTTATGACTGTAAAC 59.882 40.741 0.09 3.36 42.79 2.01
5102 5734 7.159372 GGTTGAGTCTTCCTTATGACTGTAAA 58.841 38.462 0.09 0.00 42.79 2.01
5103 5735 6.269077 TGGTTGAGTCTTCCTTATGACTGTAA 59.731 38.462 0.09 0.00 42.79 2.41
5104 5736 5.778241 TGGTTGAGTCTTCCTTATGACTGTA 59.222 40.000 0.09 0.00 42.79 2.74
5105 5737 4.593206 TGGTTGAGTCTTCCTTATGACTGT 59.407 41.667 0.09 0.00 42.79 3.55
5106 5738 5.152623 TGGTTGAGTCTTCCTTATGACTG 57.847 43.478 0.09 0.00 42.79 3.51
5107 5739 5.825593 TTGGTTGAGTCTTCCTTATGACT 57.174 39.130 0.00 0.00 45.06 3.41
5108 5740 5.107065 CGTTTGGTTGAGTCTTCCTTATGAC 60.107 44.000 0.00 0.00 0.00 3.06
5109 5741 4.994852 CGTTTGGTTGAGTCTTCCTTATGA 59.005 41.667 0.00 0.00 0.00 2.15
5110 5742 4.755123 ACGTTTGGTTGAGTCTTCCTTATG 59.245 41.667 0.00 0.00 0.00 1.90
5111 5743 4.755123 CACGTTTGGTTGAGTCTTCCTTAT 59.245 41.667 0.00 0.00 0.00 1.73
5112 5744 4.124238 CACGTTTGGTTGAGTCTTCCTTA 58.876 43.478 0.00 0.00 0.00 2.69
5113 5745 2.943033 CACGTTTGGTTGAGTCTTCCTT 59.057 45.455 0.00 0.00 0.00 3.36
5114 5746 2.169769 TCACGTTTGGTTGAGTCTTCCT 59.830 45.455 0.00 0.00 0.00 3.36
5115 5747 2.287103 GTCACGTTTGGTTGAGTCTTCC 59.713 50.000 0.00 0.00 0.00 3.46
5116 5748 2.034001 CGTCACGTTTGGTTGAGTCTTC 60.034 50.000 0.00 0.00 0.00 2.87
5117 5749 1.931172 CGTCACGTTTGGTTGAGTCTT 59.069 47.619 0.00 0.00 0.00 3.01
5118 5750 1.134907 ACGTCACGTTTGGTTGAGTCT 60.135 47.619 0.00 0.00 36.35 3.24
5119 5751 1.257155 GACGTCACGTTTGGTTGAGTC 59.743 52.381 11.55 0.00 41.37 3.36
5120 5752 1.283736 GACGTCACGTTTGGTTGAGT 58.716 50.000 11.55 0.00 41.37 3.41
5121 5753 0.580104 GGACGTCACGTTTGGTTGAG 59.420 55.000 18.91 0.00 41.37 3.02
5122 5754 0.176219 AGGACGTCACGTTTGGTTGA 59.824 50.000 18.91 0.00 41.37 3.18
5123 5755 1.855513 TAGGACGTCACGTTTGGTTG 58.144 50.000 18.91 0.00 41.37 3.77
5124 5756 2.825861 ATAGGACGTCACGTTTGGTT 57.174 45.000 18.91 0.00 41.37 3.67
5125 5757 2.094545 GGTATAGGACGTCACGTTTGGT 60.095 50.000 18.91 0.00 41.37 3.67
5126 5758 2.165030 AGGTATAGGACGTCACGTTTGG 59.835 50.000 18.91 0.00 41.37 3.28
5127 5759 3.498927 AGGTATAGGACGTCACGTTTG 57.501 47.619 18.91 0.00 41.37 2.93
5128 5760 4.517285 TCTAGGTATAGGACGTCACGTTT 58.483 43.478 18.91 0.00 41.37 3.60
5129 5761 4.125703 CTCTAGGTATAGGACGTCACGTT 58.874 47.826 18.91 0.00 41.37 3.99
5130 5762 3.386078 TCTCTAGGTATAGGACGTCACGT 59.614 47.826 18.91 0.09 45.10 4.49
5131 5763 3.987547 TCTCTAGGTATAGGACGTCACG 58.012 50.000 18.91 0.00 0.00 4.35
5132 5764 4.154556 GCATCTCTAGGTATAGGACGTCAC 59.845 50.000 18.91 6.55 0.00 3.67
5133 5765 4.202430 TGCATCTCTAGGTATAGGACGTCA 60.202 45.833 18.91 0.00 0.00 4.35
5134 5766 4.325119 TGCATCTCTAGGTATAGGACGTC 58.675 47.826 7.13 7.13 0.00 4.34
5135 5767 4.328536 CTGCATCTCTAGGTATAGGACGT 58.671 47.826 0.00 0.00 0.00 4.34
5136 5768 3.127895 GCTGCATCTCTAGGTATAGGACG 59.872 52.174 0.00 0.00 0.00 4.79
5137 5769 3.127895 CGCTGCATCTCTAGGTATAGGAC 59.872 52.174 0.00 0.00 0.00 3.85
5138 5770 3.244946 ACGCTGCATCTCTAGGTATAGGA 60.245 47.826 0.00 0.00 0.00 2.94
5139 5771 3.085533 ACGCTGCATCTCTAGGTATAGG 58.914 50.000 0.00 0.00 0.00 2.57
5140 5772 3.671971 GCACGCTGCATCTCTAGGTATAG 60.672 52.174 0.00 0.00 44.26 1.31
5141 5773 2.229062 GCACGCTGCATCTCTAGGTATA 59.771 50.000 0.00 0.00 44.26 1.47
5142 5774 1.000283 GCACGCTGCATCTCTAGGTAT 60.000 52.381 0.00 0.00 44.26 2.73
5143 5775 0.385751 GCACGCTGCATCTCTAGGTA 59.614 55.000 0.00 0.00 44.26 3.08
5144 5776 1.142748 GCACGCTGCATCTCTAGGT 59.857 57.895 0.00 0.00 44.26 3.08
5145 5777 4.024698 GCACGCTGCATCTCTAGG 57.975 61.111 0.00 0.00 44.26 3.02
5154 5786 2.305127 CCTTGCAAAAGCACGCTGC 61.305 57.895 0.00 2.28 45.46 5.25
5155 5787 2.305127 GCCTTGCAAAAGCACGCTG 61.305 57.895 14.55 0.00 0.00 5.18
5156 5788 1.172180 TAGCCTTGCAAAAGCACGCT 61.172 50.000 19.92 13.58 32.55 5.07
5157 5789 1.003769 GTAGCCTTGCAAAAGCACGC 61.004 55.000 19.92 6.95 0.00 5.34
5158 5790 0.725784 CGTAGCCTTGCAAAAGCACG 60.726 55.000 19.92 20.23 0.00 5.34
5159 5791 0.591170 TCGTAGCCTTGCAAAAGCAC 59.409 50.000 19.92 14.78 0.00 4.40
5160 5792 0.874390 CTCGTAGCCTTGCAAAAGCA 59.126 50.000 19.92 6.55 0.00 3.91
5161 5793 0.455126 GCTCGTAGCCTTGCAAAAGC 60.455 55.000 12.14 12.14 34.48 3.51
5162 5794 3.683581 GCTCGTAGCCTTGCAAAAG 57.316 52.632 0.00 0.00 34.48 2.27
5172 5804 4.419522 TTTCAATTTTGAGGCTCGTAGC 57.580 40.909 10.42 0.00 38.61 3.58
5173 5805 6.428385 AGATTTCAATTTTGAGGCTCGTAG 57.572 37.500 10.42 0.00 38.61 3.51
5174 5806 6.817765 AAGATTTCAATTTTGAGGCTCGTA 57.182 33.333 10.42 0.00 38.61 3.43
5175 5807 5.712152 AAGATTTCAATTTTGAGGCTCGT 57.288 34.783 10.42 0.00 38.61 4.18
5176 5808 7.285788 CAAAAAGATTTCAATTTTGAGGCTCG 58.714 34.615 10.42 0.00 43.36 5.03
5177 5809 7.041576 AGCAAAAAGATTTCAATTTTGAGGCTC 60.042 33.333 7.79 7.79 43.36 4.70
5178 5810 6.769341 AGCAAAAAGATTTCAATTTTGAGGCT 59.231 30.769 18.10 0.00 43.36 4.58
5179 5811 6.962686 AGCAAAAAGATTTCAATTTTGAGGC 58.037 32.000 18.10 8.67 43.36 4.70
5180 5812 8.145316 TGAGCAAAAAGATTTCAATTTTGAGG 57.855 30.769 18.10 2.01 43.36 3.86
5181 5813 9.594038 CATGAGCAAAAAGATTTCAATTTTGAG 57.406 29.630 18.10 0.00 43.36 3.02
5182 5814 9.327628 TCATGAGCAAAAAGATTTCAATTTTGA 57.672 25.926 18.10 0.00 43.36 2.69
5183 5815 9.938670 TTCATGAGCAAAAAGATTTCAATTTTG 57.061 25.926 13.10 13.10 43.47 2.44
5184 5816 9.940166 GTTCATGAGCAAAAAGATTTCAATTTT 57.060 25.926 4.47 0.00 0.00 1.82
5185 5817 9.111613 TGTTCATGAGCAAAAAGATTTCAATTT 57.888 25.926 10.10 0.00 0.00 1.82
5186 5818 8.665643 TGTTCATGAGCAAAAAGATTTCAATT 57.334 26.923 10.10 0.00 0.00 2.32
5187 5819 8.665643 TTGTTCATGAGCAAAAAGATTTCAAT 57.334 26.923 21.03 0.00 0.00 2.57
5188 5820 8.489990 TTTGTTCATGAGCAAAAAGATTTCAA 57.510 26.923 28.70 8.25 38.31 2.69
5189 5821 7.225145 CCTTTGTTCATGAGCAAAAAGATTTCA 59.775 33.333 29.76 11.71 40.17 2.69
5190 5822 7.439056 TCCTTTGTTCATGAGCAAAAAGATTTC 59.561 33.333 29.76 0.00 40.17 2.17
5191 5823 7.274447 TCCTTTGTTCATGAGCAAAAAGATTT 58.726 30.769 29.76 0.00 40.17 2.17
5192 5824 6.819284 TCCTTTGTTCATGAGCAAAAAGATT 58.181 32.000 29.76 0.00 40.17 2.40
5193 5825 6.409524 TCCTTTGTTCATGAGCAAAAAGAT 57.590 33.333 29.76 0.00 40.17 2.40
5194 5826 5.221303 CCTCCTTTGTTCATGAGCAAAAAGA 60.221 40.000 29.76 26.46 40.17 2.52
5195 5827 4.986659 CCTCCTTTGTTCATGAGCAAAAAG 59.013 41.667 29.76 27.01 40.17 2.27
5196 5828 4.648762 TCCTCCTTTGTTCATGAGCAAAAA 59.351 37.500 29.76 21.80 40.17 1.94
5197 5829 4.214310 TCCTCCTTTGTTCATGAGCAAAA 58.786 39.130 29.76 19.30 40.17 2.44
5198 5830 3.831323 TCCTCCTTTGTTCATGAGCAAA 58.169 40.909 28.75 28.75 38.80 3.68
5199 5831 3.507162 TCCTCCTTTGTTCATGAGCAA 57.493 42.857 19.66 19.66 0.00 3.91
5200 5832 3.507162 TTCCTCCTTTGTTCATGAGCA 57.493 42.857 8.32 8.32 0.00 4.26
5201 5833 3.823304 ACTTTCCTCCTTTGTTCATGAGC 59.177 43.478 2.05 2.05 0.00 4.26
5202 5834 6.396829 AAACTTTCCTCCTTTGTTCATGAG 57.603 37.500 0.00 0.00 0.00 2.90
5203 5835 7.889873 TTAAACTTTCCTCCTTTGTTCATGA 57.110 32.000 0.00 0.00 0.00 3.07
5204 5836 9.546428 AAATTAAACTTTCCTCCTTTGTTCATG 57.454 29.630 0.00 0.00 0.00 3.07
5207 5839 9.193133 GCTAAATTAAACTTTCCTCCTTTGTTC 57.807 33.333 0.00 0.00 0.00 3.18
5208 5840 8.148351 GGCTAAATTAAACTTTCCTCCTTTGTT 58.852 33.333 0.00 0.00 0.00 2.83
5209 5841 7.256190 GGGCTAAATTAAACTTTCCTCCTTTGT 60.256 37.037 0.00 0.00 0.00 2.83
5210 5842 7.097192 GGGCTAAATTAAACTTTCCTCCTTTG 58.903 38.462 0.00 0.00 0.00 2.77
5211 5843 6.071560 CGGGCTAAATTAAACTTTCCTCCTTT 60.072 38.462 0.00 0.00 0.00 3.11
5212 5844 5.417894 CGGGCTAAATTAAACTTTCCTCCTT 59.582 40.000 0.00 0.00 0.00 3.36
5213 5845 4.948004 CGGGCTAAATTAAACTTTCCTCCT 59.052 41.667 0.00 0.00 0.00 3.69
5214 5846 4.945543 TCGGGCTAAATTAAACTTTCCTCC 59.054 41.667 0.00 0.00 0.00 4.30
5215 5847 6.505044 TTCGGGCTAAATTAAACTTTCCTC 57.495 37.500 0.00 0.00 0.00 3.71
5216 5848 6.904463 TTTCGGGCTAAATTAAACTTTCCT 57.096 33.333 0.00 0.00 0.00 3.36
5217 5849 7.094631 ACATTTCGGGCTAAATTAAACTTTCC 58.905 34.615 0.00 0.00 0.00 3.13
5218 5850 9.285770 CTACATTTCGGGCTAAATTAAACTTTC 57.714 33.333 0.00 0.00 0.00 2.62
5219 5851 7.758076 GCTACATTTCGGGCTAAATTAAACTTT 59.242 33.333 0.00 0.00 0.00 2.66
5220 5852 7.094118 TGCTACATTTCGGGCTAAATTAAACTT 60.094 33.333 0.00 0.00 0.00 2.66
5221 5853 6.376018 TGCTACATTTCGGGCTAAATTAAACT 59.624 34.615 0.00 0.00 0.00 2.66
5222 5854 6.557110 TGCTACATTTCGGGCTAAATTAAAC 58.443 36.000 0.00 0.00 0.00 2.01
5223 5855 6.761099 TGCTACATTTCGGGCTAAATTAAA 57.239 33.333 0.00 0.00 0.00 1.52
5224 5856 6.376018 ACTTGCTACATTTCGGGCTAAATTAA 59.624 34.615 0.00 0.00 0.00 1.40
5225 5857 5.883673 ACTTGCTACATTTCGGGCTAAATTA 59.116 36.000 0.00 0.00 0.00 1.40
5226 5858 4.705023 ACTTGCTACATTTCGGGCTAAATT 59.295 37.500 0.00 0.00 0.00 1.82
5227 5859 4.270008 ACTTGCTACATTTCGGGCTAAAT 58.730 39.130 0.00 0.00 0.00 1.40
5228 5860 3.681593 ACTTGCTACATTTCGGGCTAAA 58.318 40.909 0.00 0.00 0.00 1.85
5229 5861 3.343941 ACTTGCTACATTTCGGGCTAA 57.656 42.857 0.00 0.00 0.00 3.09
5230 5862 3.343941 AACTTGCTACATTTCGGGCTA 57.656 42.857 0.00 0.00 0.00 3.93
5231 5863 2.200373 AACTTGCTACATTTCGGGCT 57.800 45.000 0.00 0.00 0.00 5.19
5232 5864 2.415491 GGAAACTTGCTACATTTCGGGC 60.415 50.000 0.00 0.00 33.91 6.13
5233 5865 2.163613 GGGAAACTTGCTACATTTCGGG 59.836 50.000 0.00 0.00 33.91 5.14
5234 5866 3.081804 AGGGAAACTTGCTACATTTCGG 58.918 45.455 0.00 0.00 33.91 4.30
5235 5867 3.127030 GGAGGGAAACTTGCTACATTTCG 59.873 47.826 0.00 0.00 33.91 3.46
5236 5868 3.444034 GGGAGGGAAACTTGCTACATTTC 59.556 47.826 0.00 0.00 0.00 2.17
5237 5869 3.076032 AGGGAGGGAAACTTGCTACATTT 59.924 43.478 0.00 0.00 0.00 2.32
5238 5870 2.649816 AGGGAGGGAAACTTGCTACATT 59.350 45.455 0.00 0.00 0.00 2.71
5239 5871 2.279173 AGGGAGGGAAACTTGCTACAT 58.721 47.619 0.00 0.00 0.00 2.29
5240 5872 1.742308 AGGGAGGGAAACTTGCTACA 58.258 50.000 0.00 0.00 0.00 2.74
5241 5873 2.881111 AAGGGAGGGAAACTTGCTAC 57.119 50.000 0.00 0.00 0.00 3.58
5242 5874 2.986728 AGAAAGGGAGGGAAACTTGCTA 59.013 45.455 0.00 0.00 28.36 3.49
5243 5875 1.783365 AGAAAGGGAGGGAAACTTGCT 59.217 47.619 0.00 0.00 0.00 3.91
5244 5876 2.163509 GAGAAAGGGAGGGAAACTTGC 58.836 52.381 0.00 0.00 0.00 4.01
5245 5877 2.555448 GGGAGAAAGGGAGGGAAACTTG 60.555 54.545 0.00 0.00 0.00 3.16
5246 5878 1.711375 GGGAGAAAGGGAGGGAAACTT 59.289 52.381 0.00 0.00 0.00 2.66
5247 5879 1.373536 GGGAGAAAGGGAGGGAAACT 58.626 55.000 0.00 0.00 0.00 2.66
5248 5880 1.004862 CTGGGAGAAAGGGAGGGAAAC 59.995 57.143 0.00 0.00 0.00 2.78
5249 5881 1.372501 CTGGGAGAAAGGGAGGGAAA 58.627 55.000 0.00 0.00 0.00 3.13
5250 5882 1.208165 GCTGGGAGAAAGGGAGGGAA 61.208 60.000 0.00 0.00 0.00 3.97
5251 5883 1.616628 GCTGGGAGAAAGGGAGGGA 60.617 63.158 0.00 0.00 0.00 4.20
5252 5884 2.684499 GGCTGGGAGAAAGGGAGGG 61.684 68.421 0.00 0.00 0.00 4.30
5253 5885 3.002371 GGCTGGGAGAAAGGGAGG 58.998 66.667 0.00 0.00 0.00 4.30
5254 5886 2.586792 CGGCTGGGAGAAAGGGAG 59.413 66.667 0.00 0.00 0.00 4.30
5255 5887 3.717294 GCGGCTGGGAGAAAGGGA 61.717 66.667 0.00 0.00 0.00 4.20
5256 5888 4.803908 GGCGGCTGGGAGAAAGGG 62.804 72.222 0.00 0.00 0.00 3.95
5257 5889 4.803908 GGGCGGCTGGGAGAAAGG 62.804 72.222 9.56 0.00 0.00 3.11
5258 5890 4.033776 TGGGCGGCTGGGAGAAAG 62.034 66.667 9.56 0.00 0.00 2.62
5259 5891 4.344865 GTGGGCGGCTGGGAGAAA 62.345 66.667 9.56 0.00 0.00 2.52
5262 5894 4.785453 GAAGTGGGCGGCTGGGAG 62.785 72.222 9.56 0.00 0.00 4.30
5264 5896 4.351054 AAGAAGTGGGCGGCTGGG 62.351 66.667 9.56 0.00 0.00 4.45
5265 5897 2.747855 GAAGAAGTGGGCGGCTGG 60.748 66.667 9.56 0.00 0.00 4.85
5266 5898 1.743252 GAGAAGAAGTGGGCGGCTG 60.743 63.158 9.56 0.00 0.00 4.85
5267 5899 2.665603 GAGAAGAAGTGGGCGGCT 59.334 61.111 9.56 0.00 0.00 5.52
5268 5900 2.436824 GGAGAAGAAGTGGGCGGC 60.437 66.667 0.00 0.00 0.00 6.53
5269 5901 1.915078 ATGGGAGAAGAAGTGGGCGG 61.915 60.000 0.00 0.00 0.00 6.13
5270 5902 0.035056 AATGGGAGAAGAAGTGGGCG 60.035 55.000 0.00 0.00 0.00 6.13
5271 5903 1.272147 ACAATGGGAGAAGAAGTGGGC 60.272 52.381 0.00 0.00 0.00 5.36
5272 5904 2.887151 ACAATGGGAGAAGAAGTGGG 57.113 50.000 0.00 0.00 0.00 4.61
5273 5905 4.026356 AGAACAATGGGAGAAGAAGTGG 57.974 45.455 0.00 0.00 0.00 4.00
5274 5906 5.181748 CCTAGAACAATGGGAGAAGAAGTG 58.818 45.833 0.00 0.00 0.00 3.16
5275 5907 4.846940 ACCTAGAACAATGGGAGAAGAAGT 59.153 41.667 0.00 0.00 0.00 3.01
5276 5908 5.428184 ACCTAGAACAATGGGAGAAGAAG 57.572 43.478 0.00 0.00 0.00 2.85
5277 5909 5.568825 CGAACCTAGAACAATGGGAGAAGAA 60.569 44.000 0.00 0.00 0.00 2.52
5278 5910 4.081642 CGAACCTAGAACAATGGGAGAAGA 60.082 45.833 0.00 0.00 0.00 2.87
5279 5911 4.184629 CGAACCTAGAACAATGGGAGAAG 58.815 47.826 0.00 0.00 0.00 2.85
5280 5912 3.055385 CCGAACCTAGAACAATGGGAGAA 60.055 47.826 0.00 0.00 0.00 2.87
5281 5913 2.500098 CCGAACCTAGAACAATGGGAGA 59.500 50.000 0.00 0.00 0.00 3.71
5282 5914 2.500098 TCCGAACCTAGAACAATGGGAG 59.500 50.000 0.00 0.00 0.00 4.30
5283 5915 2.500098 CTCCGAACCTAGAACAATGGGA 59.500 50.000 0.00 0.00 0.00 4.37
5284 5916 2.906354 CTCCGAACCTAGAACAATGGG 58.094 52.381 0.00 0.00 0.00 4.00
5285 5917 2.093447 AGCTCCGAACCTAGAACAATGG 60.093 50.000 0.00 0.00 0.00 3.16
5286 5918 3.190874 GAGCTCCGAACCTAGAACAATG 58.809 50.000 0.87 0.00 0.00 2.82
5287 5919 2.168728 GGAGCTCCGAACCTAGAACAAT 59.831 50.000 19.06 0.00 0.00 2.71
5288 5920 1.549170 GGAGCTCCGAACCTAGAACAA 59.451 52.381 19.06 0.00 0.00 2.83
5289 5921 1.183549 GGAGCTCCGAACCTAGAACA 58.816 55.000 19.06 0.00 0.00 3.18
5290 5922 0.460722 GGGAGCTCCGAACCTAGAAC 59.539 60.000 26.36 4.60 36.71 3.01
5291 5923 2.897699 GGGAGCTCCGAACCTAGAA 58.102 57.895 26.36 0.00 36.71 2.10
5292 5924 4.680487 GGGAGCTCCGAACCTAGA 57.320 61.111 26.36 0.00 36.71 2.43
5308 5940 2.378634 AATCTGGGAGAAGGGGCGG 61.379 63.158 0.00 0.00 0.00 6.13
5309 5941 1.153086 CAATCTGGGAGAAGGGGCG 60.153 63.158 0.00 0.00 0.00 6.13
5310 5942 0.332972 AACAATCTGGGAGAAGGGGC 59.667 55.000 0.00 0.00 0.00 5.80
5311 5943 3.435601 CCATAACAATCTGGGAGAAGGGG 60.436 52.174 0.00 0.00 0.00 4.79
5312 5944 3.203040 ACCATAACAATCTGGGAGAAGGG 59.797 47.826 0.00 0.00 36.82 3.95
5313 5945 4.202441 CACCATAACAATCTGGGAGAAGG 58.798 47.826 0.00 0.00 36.82 3.46
5314 5946 3.629398 GCACCATAACAATCTGGGAGAAG 59.371 47.826 0.00 0.00 36.82 2.85
5315 5947 3.266772 AGCACCATAACAATCTGGGAGAA 59.733 43.478 0.00 0.00 36.82 2.87
5316 5948 2.846206 AGCACCATAACAATCTGGGAGA 59.154 45.455 0.00 0.00 36.82 3.71
5317 5949 3.287867 AGCACCATAACAATCTGGGAG 57.712 47.619 0.00 0.00 36.82 4.30
5318 5950 3.780294 AGTAGCACCATAACAATCTGGGA 59.220 43.478 0.00 0.00 36.82 4.37
5319 5951 3.879295 CAGTAGCACCATAACAATCTGGG 59.121 47.826 0.00 0.00 36.82 4.45
5320 5952 3.879295 CCAGTAGCACCATAACAATCTGG 59.121 47.826 0.00 0.00 38.55 3.86
5321 5953 3.313526 GCCAGTAGCACCATAACAATCTG 59.686 47.826 0.00 0.00 42.97 2.90
5322 5954 3.545703 GCCAGTAGCACCATAACAATCT 58.454 45.455 0.00 0.00 42.97 2.40
5323 5955 3.971032 GCCAGTAGCACCATAACAATC 57.029 47.619 0.00 0.00 42.97 2.67
5335 5967 3.244033 CTGATATAGCCAGCCAGTAGC 57.756 52.381 0.00 0.00 44.25 3.58
5355 5987 2.413142 GGGGACAGAGCAGCAATGC 61.413 63.158 0.00 0.00 0.00 3.56
5356 5988 0.747283 GAGGGGACAGAGCAGCAATG 60.747 60.000 0.00 0.00 0.00 2.82
5357 5989 1.606531 GAGGGGACAGAGCAGCAAT 59.393 57.895 0.00 0.00 0.00 3.56
5358 5990 2.596851 GGAGGGGACAGAGCAGCAA 61.597 63.158 0.00 0.00 0.00 3.91
5359 5991 3.005539 GGAGGGGACAGAGCAGCA 61.006 66.667 0.00 0.00 0.00 4.41
5360 5992 2.686835 AGGAGGGGACAGAGCAGC 60.687 66.667 0.00 0.00 0.00 5.25
5361 5993 1.001503 AGAGGAGGGGACAGAGCAG 59.998 63.158 0.00 0.00 0.00 4.24
5362 5994 1.305633 CAGAGGAGGGGACAGAGCA 60.306 63.158 0.00 0.00 0.00 4.26
5363 5995 3.627690 CAGAGGAGGGGACAGAGC 58.372 66.667 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.