Multiple sequence alignment - TraesCS6A01G311300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G311300 chr6A 100.000 4151 0 0 1 4151 547595780 547591630 0.000000e+00 7666.0
1 TraesCS6A01G311300 chr6A 81.196 1037 152 23 2359 3366 547279313 547278291 0.000000e+00 795.0
2 TraesCS6A01G311300 chr6A 74.965 719 154 16 2419 3128 546991386 546992087 1.450000e-79 307.0
3 TraesCS6A01G311300 chr6A 89.944 179 18 0 1371 1549 547279633 547279455 8.970000e-57 231.0
4 TraesCS6A01G311300 chr6A 82.609 207 28 7 1388 1591 546990989 546991190 4.260000e-40 176.0
5 TraesCS6A01G311300 chr6A 81.356 177 25 7 2165 2337 583293689 583293861 2.010000e-28 137.0
6 TraesCS6A01G311300 chr6A 80.451 133 21 2 2184 2311 12981603 12981735 3.420000e-16 97.1
7 TraesCS6A01G311300 chr6B 89.857 976 61 17 687 1633 600787659 600786693 0.000000e+00 1219.0
8 TraesCS6A01G311300 chr6B 85.347 1051 113 26 2342 3359 600786292 600785250 0.000000e+00 1050.0
9 TraesCS6A01G311300 chr6B 80.751 1039 160 22 2355 3366 600597134 600598159 0.000000e+00 774.0
10 TraesCS6A01G311300 chr6B 80.042 952 134 28 2342 3258 601081801 601080871 0.000000e+00 654.0
11 TraesCS6A01G311300 chr6B 84.601 526 42 13 799 1310 601082561 601082061 1.730000e-133 486.0
12 TraesCS6A01G311300 chr6B 93.855 179 9 1 1371 1549 601082045 601081869 6.840000e-68 268.0
13 TraesCS6A01G311300 chr6B 81.707 328 39 8 1004 1319 600596475 600596793 1.920000e-63 254.0
14 TraesCS6A01G311300 chr6B 83.806 247 10 10 3273 3491 601079703 601079459 1.510000e-49 207.0
15 TraesCS6A01G311300 chr6B 78.549 317 45 12 987 1290 599915922 599916228 1.970000e-43 187.0
16 TraesCS6A01G311300 chr6B 90.210 143 11 3 518 659 31077829 31077969 2.550000e-42 183.0
17 TraesCS6A01G311300 chr6B 90.210 143 11 3 518 659 31121995 31122135 2.550000e-42 183.0
18 TraesCS6A01G311300 chr6B 90.210 143 11 3 518 659 31131460 31131600 2.550000e-42 183.0
19 TraesCS6A01G311300 chr6B 90.210 143 11 3 518 659 31174131 31174271 2.550000e-42 183.0
20 TraesCS6A01G311300 chr6B 90.210 143 10 4 518 659 31205314 31205453 2.550000e-42 183.0
21 TraesCS6A01G311300 chr6B 89.510 143 12 3 518 659 31184362 31184502 1.190000e-40 178.0
22 TraesCS6A01G311300 chr6B 88.811 143 13 3 518 659 31111656 31111796 5.520000e-39 172.0
23 TraesCS6A01G311300 chr6B 88.889 126 13 1 2037 2162 600786411 600786287 2.000000e-33 154.0
24 TraesCS6A01G311300 chr6B 82.584 178 22 5 2168 2337 196224323 196224147 9.300000e-32 148.0
25 TraesCS6A01G311300 chr6D 82.471 1198 138 31 2342 3491 401150901 401149728 0.000000e+00 983.0
26 TraesCS6A01G311300 chr6D 88.676 627 40 13 690 1310 401151822 401151221 0.000000e+00 736.0
27 TraesCS6A01G311300 chr6D 91.286 241 21 0 1 241 353212339 353212099 3.090000e-86 329.0
28 TraesCS6A01G311300 chr6D 89.372 207 16 4 1371 1574 401151205 401151002 5.330000e-64 255.0
29 TraesCS6A01G311300 chr6D 93.333 135 9 0 525 659 140015145 140015279 2.530000e-47 200.0
30 TraesCS6A01G311300 chr6D 83.085 201 27 7 1388 1586 400794556 400794751 4.260000e-40 176.0
31 TraesCS6A01G311300 chr6D 77.564 312 48 13 987 1290 400794177 400794474 7.140000e-38 169.0
32 TraesCS6A01G311300 chr6D 82.320 181 25 4 2165 2339 333350226 333350405 2.590000e-32 150.0
33 TraesCS6A01G311300 chr6D 82.738 168 19 4 2174 2337 306128995 306128834 1.560000e-29 141.0
34 TraesCS6A01G311300 chr6D 100.000 30 0 0 2308 2337 445581662 445581691 5.800000e-04 56.5
35 TraesCS6A01G311300 chr3B 86.937 666 73 11 3492 4151 424736343 424737000 0.000000e+00 736.0
36 TraesCS6A01G311300 chr3B 90.984 244 21 1 3 245 172107850 172107607 1.110000e-85 327.0
37 TraesCS6A01G311300 chr3B 90.984 244 20 2 3 245 172227322 172227080 1.110000e-85 327.0
38 TraesCS6A01G311300 chr3B 86.833 281 29 3 248 520 172227046 172226766 1.450000e-79 307.0
39 TraesCS6A01G311300 chr3B 94.815 135 7 0 525 659 252593434 252593568 1.170000e-50 211.0
40 TraesCS6A01G311300 chr3B 84.181 177 19 6 2168 2337 438031935 438031761 3.320000e-36 163.0
41 TraesCS6A01G311300 chr2B 86.705 519 58 7 3593 4107 744973559 744974070 2.170000e-157 566.0
42 TraesCS6A01G311300 chr2B 81.932 559 58 18 3 520 765760743 765760187 2.290000e-117 433.0
43 TraesCS6A01G311300 chr2B 93.333 135 9 0 525 659 61496955 61497089 2.530000e-47 200.0
44 TraesCS6A01G311300 chr1D 85.219 548 44 11 1 511 324725377 324724830 2.840000e-146 529.0
45 TraesCS6A01G311300 chr1D 85.036 548 42 13 1 508 260315485 260316032 4.760000e-144 521.0
46 TraesCS6A01G311300 chr1D 82.482 137 17 4 2168 2298 424990537 424990672 3.390000e-21 113.0
47 TraesCS6A01G311300 chr2D 84.698 562 43 21 1 520 642039125 642038565 4.760000e-144 521.0
48 TraesCS6A01G311300 chr2D 82.514 549 55 23 1 520 589700766 589701302 1.060000e-120 444.0
49 TraesCS6A01G311300 chr2D 85.393 178 17 5 2165 2337 32641363 32641536 4.260000e-40 176.0
50 TraesCS6A01G311300 chr2D 93.750 96 5 1 1905 2000 402234313 402234219 4.330000e-30 143.0
51 TraesCS6A01G311300 chr2D 94.565 92 4 1 1906 1997 536428447 536428537 1.560000e-29 141.0
52 TraesCS6A01G311300 chr2A 86.667 465 42 15 3507 3958 752835227 752835684 8.010000e-137 497.0
53 TraesCS6A01G311300 chr2A 81.768 543 58 26 1 520 756950561 756950037 2.310000e-112 416.0
54 TraesCS6A01G311300 chr2A 92.000 100 7 1 1902 2000 686840876 686840777 5.600000e-29 139.0
55 TraesCS6A01G311300 chr4D 83.150 546 52 24 1 520 483478062 483477531 2.920000e-126 462.0
56 TraesCS6A01G311300 chr4D 91.429 140 10 1 517 656 489134275 489134412 1.520000e-44 191.0
57 TraesCS6A01G311300 chr4D 84.239 184 21 5 2160 2337 419245414 419245233 5.520000e-39 172.0
58 TraesCS6A01G311300 chr4D 80.749 187 24 10 2162 2337 504515466 504515651 7.240000e-28 135.0
59 TraesCS6A01G311300 chr7A 82.384 562 55 31 1 520 206906064 206906623 2.280000e-122 449.0
60 TraesCS6A01G311300 chr7A 86.667 180 16 5 2168 2340 707996284 707996106 4.230000e-45 193.0
61 TraesCS6A01G311300 chr7A 86.207 174 16 7 2168 2336 717909866 717909696 9.170000e-42 182.0
62 TraesCS6A01G311300 chr7A 94.737 95 4 1 1906 2000 3014099 3014006 3.340000e-31 147.0
63 TraesCS6A01G311300 chr3D 82.332 549 56 23 1 520 394613103 394613639 4.930000e-119 438.0
64 TraesCS6A01G311300 chr3D 83.158 380 48 6 3739 4118 581404056 581404419 2.390000e-87 333.0
65 TraesCS6A01G311300 chr3D 94.815 135 7 0 525 659 610007406 610007540 1.170000e-50 211.0
66 TraesCS6A01G311300 chr3D 94.074 135 8 0 525 659 374057300 374057166 5.440000e-49 206.0
67 TraesCS6A01G311300 chr3D 93.333 135 9 0 525 659 173712924 173713058 2.530000e-47 200.0
68 TraesCS6A01G311300 chr3D 93.333 135 8 1 525 659 380141938 380142071 9.100000e-47 198.0
69 TraesCS6A01G311300 chr3D 81.622 185 26 7 2157 2336 159797626 159797807 3.340000e-31 147.0
70 TraesCS6A01G311300 chr3D 83.660 153 19 5 2187 2337 489456070 489455922 5.600000e-29 139.0
71 TraesCS6A01G311300 chr3D 75.568 176 17 15 2168 2337 604777357 604777512 3.460000e-06 63.9
72 TraesCS6A01G311300 chr1A 82.189 539 51 26 1 508 534617807 534617283 4.960000e-114 422.0
73 TraesCS6A01G311300 chr1A 80.108 558 68 21 3 520 84049438 84048884 3.920000e-100 375.0
74 TraesCS6A01G311300 chr1A 92.683 246 16 2 1 245 369361538 369361294 1.840000e-93 353.0
75 TraesCS6A01G311300 chr1A 86.957 184 15 8 2161 2336 44475866 44476048 9.100000e-47 198.0
76 TraesCS6A01G311300 chr1A 96.591 88 3 0 1910 1997 575557358 575557271 3.340000e-31 147.0
77 TraesCS6A01G311300 chr4A 88.788 330 30 5 1 323 602659029 602658700 8.360000e-107 398.0
78 TraesCS6A01G311300 chr4A 93.089 246 16 1 1 245 602891225 602891470 3.950000e-95 359.0
79 TraesCS6A01G311300 chr4A 86.503 163 17 5 500 659 725921785 725921945 1.530000e-39 174.0
80 TraesCS6A01G311300 chr4A 98.824 85 1 0 1913 1997 584810865 584810949 7.190000e-33 152.0
81 TraesCS6A01G311300 chr7D 91.870 246 19 1 1 245 633856907 633857152 3.970000e-90 342.0
82 TraesCS6A01G311300 chr7D 94.074 135 8 0 525 659 204017588 204017454 5.440000e-49 206.0
83 TraesCS6A01G311300 chr7D 93.333 135 9 0 525 659 72120806 72120940 2.530000e-47 200.0
84 TraesCS6A01G311300 chr7D 79.888 179 26 9 2168 2337 593915705 593915528 5.640000e-24 122.0
85 TraesCS6A01G311300 chr7D 96.875 32 1 0 1784 1815 33009591 33009560 2.000000e-03 54.7
86 TraesCS6A01G311300 chr5B 91.632 239 20 0 3 241 271914918 271915156 8.600000e-87 331.0
87 TraesCS6A01G311300 chr5B 85.795 176 21 3 2165 2337 350408200 350408374 2.550000e-42 183.0
88 TraesCS6A01G311300 chr5B 84.699 183 15 6 2165 2337 462123135 462123314 1.980000e-38 171.0
89 TraesCS6A01G311300 chr5B 86.275 51 7 0 1118 1168 643652440 643652390 5.800000e-04 56.5
90 TraesCS6A01G311300 chr3A 85.638 188 23 3 2156 2340 31826965 31826779 1.180000e-45 195.0
91 TraesCS6A01G311300 chr3A 83.799 179 22 3 2165 2337 702962423 702962600 3.320000e-36 163.0
92 TraesCS6A01G311300 chr3A 100.000 31 0 0 1784 1814 589904385 589904355 1.610000e-04 58.4
93 TraesCS6A01G311300 chr5A 86.034 179 17 5 2165 2337 101083275 101083451 7.090000e-43 185.0
94 TraesCS6A01G311300 chr5A 92.079 101 7 1 1901 2000 698143549 698143649 1.560000e-29 141.0
95 TraesCS6A01G311300 chr5A 100.000 29 0 0 1118 1146 640926575 640926547 2.000000e-03 54.7
96 TraesCS6A01G311300 chr7B 84.615 182 21 5 2168 2343 480277778 480277598 1.530000e-39 174.0
97 TraesCS6A01G311300 chrUn 98.824 85 1 0 1913 1997 22143159 22143243 7.190000e-33 152.0
98 TraesCS6A01G311300 chr4B 96.591 88 3 0 1910 1997 637621200 637621113 3.340000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G311300 chr6A 547591630 547595780 4150 True 7666.000000 7666 100.000000 1 4151 1 chr6A.!!$R1 4150
1 TraesCS6A01G311300 chr6A 547278291 547279633 1342 True 513.000000 795 85.570000 1371 3366 2 chr6A.!!$R2 1995
2 TraesCS6A01G311300 chr6A 546990989 546992087 1098 False 241.500000 307 78.787000 1388 3128 2 chr6A.!!$F3 1740
3 TraesCS6A01G311300 chr6B 600785250 600787659 2409 True 807.666667 1219 88.031000 687 3359 3 chr6B.!!$R2 2672
4 TraesCS6A01G311300 chr6B 600596475 600598159 1684 False 514.000000 774 81.229000 1004 3366 2 chr6B.!!$F9 2362
5 TraesCS6A01G311300 chr6B 601079459 601082561 3102 True 403.750000 654 85.576000 799 3491 4 chr6B.!!$R3 2692
6 TraesCS6A01G311300 chr6D 401149728 401151822 2094 True 658.000000 983 86.839667 690 3491 3 chr6D.!!$R3 2801
7 TraesCS6A01G311300 chr3B 424736343 424737000 657 False 736.000000 736 86.937000 3492 4151 1 chr3B.!!$F2 659
8 TraesCS6A01G311300 chr3B 172226766 172227322 556 True 317.000000 327 88.908500 3 520 2 chr3B.!!$R3 517
9 TraesCS6A01G311300 chr2B 744973559 744974070 511 False 566.000000 566 86.705000 3593 4107 1 chr2B.!!$F2 514
10 TraesCS6A01G311300 chr2B 765760187 765760743 556 True 433.000000 433 81.932000 3 520 1 chr2B.!!$R1 517
11 TraesCS6A01G311300 chr1D 324724830 324725377 547 True 529.000000 529 85.219000 1 511 1 chr1D.!!$R1 510
12 TraesCS6A01G311300 chr1D 260315485 260316032 547 False 521.000000 521 85.036000 1 508 1 chr1D.!!$F1 507
13 TraesCS6A01G311300 chr2D 642038565 642039125 560 True 521.000000 521 84.698000 1 520 1 chr2D.!!$R2 519
14 TraesCS6A01G311300 chr2D 589700766 589701302 536 False 444.000000 444 82.514000 1 520 1 chr2D.!!$F3 519
15 TraesCS6A01G311300 chr2A 756950037 756950561 524 True 416.000000 416 81.768000 1 520 1 chr2A.!!$R2 519
16 TraesCS6A01G311300 chr4D 483477531 483478062 531 True 462.000000 462 83.150000 1 520 1 chr4D.!!$R2 519
17 TraesCS6A01G311300 chr7A 206906064 206906623 559 False 449.000000 449 82.384000 1 520 1 chr7A.!!$F1 519
18 TraesCS6A01G311300 chr3D 394613103 394613639 536 False 438.000000 438 82.332000 1 520 1 chr3D.!!$F4 519
19 TraesCS6A01G311300 chr1A 534617283 534617807 524 True 422.000000 422 82.189000 1 508 1 chr1A.!!$R3 507
20 TraesCS6A01G311300 chr1A 84048884 84049438 554 True 375.000000 375 80.108000 3 520 1 chr1A.!!$R1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
554 610 0.255033 AGAATTACACTTCCCCGGCC 59.745 55.0 0.00 0.0 0.00 6.13 F
1874 1987 0.036388 GCTACAGCCAAGTACCAGCA 60.036 55.0 2.65 0.0 34.31 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2407 2712 0.544697 AACGGGAGGTCGGCATTATT 59.455 50.0 0.00 0.0 0.0 1.4 R
3504 5039 0.545071 CCCTGGGCCCACAAAATCTT 60.545 55.0 24.45 0.0 0.0 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.936553 GCAAACTCCAAAATGATGCCCC 60.937 50.000 0.00 0.00 0.00 5.80
107 110 2.848784 GGGTTTCCCCCGGAGTTT 59.151 61.111 0.73 0.00 45.80 2.66
110 113 1.457165 GTTTCCCCCGGAGTTTCCA 59.543 57.895 0.73 0.00 35.91 3.53
196 199 2.657296 CATCGCGCCGACCGTTAT 60.657 61.111 0.00 0.00 39.18 1.89
327 365 4.129737 CCATCGTGACGTCCGGCT 62.130 66.667 20.97 10.14 0.00 5.52
376 415 4.007644 CCGCACCAGCTCCTCACA 62.008 66.667 0.00 0.00 39.10 3.58
491 545 1.385915 GGGGTGATGGGATCTGGGA 60.386 63.158 0.00 0.00 0.00 4.37
530 586 3.436700 GGGGCGACTCCATAAAAATTG 57.563 47.619 0.00 0.00 36.21 2.32
531 587 2.100749 GGGGCGACTCCATAAAAATTGG 59.899 50.000 0.00 0.00 36.21 3.16
532 588 2.100749 GGGCGACTCCATAAAAATTGGG 59.899 50.000 0.00 0.00 34.85 4.12
533 589 2.100749 GGCGACTCCATAAAAATTGGGG 59.899 50.000 0.00 0.00 40.81 4.96
534 590 2.100749 GCGACTCCATAAAAATTGGGGG 59.899 50.000 0.00 0.00 39.19 5.40
535 591 3.626930 CGACTCCATAAAAATTGGGGGA 58.373 45.455 0.00 0.00 39.19 4.81
536 592 3.632145 CGACTCCATAAAAATTGGGGGAG 59.368 47.826 0.00 0.00 45.73 4.30
537 593 4.627741 CGACTCCATAAAAATTGGGGGAGA 60.628 45.833 12.09 0.00 43.58 3.71
538 594 5.269189 GACTCCATAAAAATTGGGGGAGAA 58.731 41.667 12.09 0.00 43.58 2.87
539 595 5.853700 ACTCCATAAAAATTGGGGGAGAAT 58.146 37.500 12.09 0.00 43.58 2.40
540 596 6.271537 ACTCCATAAAAATTGGGGGAGAATT 58.728 36.000 12.09 0.00 43.58 2.17
541 597 7.426667 ACTCCATAAAAATTGGGGGAGAATTA 58.573 34.615 12.09 0.00 43.58 1.40
542 598 7.344612 ACTCCATAAAAATTGGGGGAGAATTAC 59.655 37.037 12.09 0.00 43.58 1.89
543 599 7.192628 TCCATAAAAATTGGGGGAGAATTACA 58.807 34.615 0.00 0.00 34.85 2.41
544 600 7.125053 TCCATAAAAATTGGGGGAGAATTACAC 59.875 37.037 0.00 0.00 34.85 2.90
545 601 7.125659 CCATAAAAATTGGGGGAGAATTACACT 59.874 37.037 0.00 0.00 0.00 3.55
546 602 8.539544 CATAAAAATTGGGGGAGAATTACACTT 58.460 33.333 0.00 0.00 0.00 3.16
547 603 6.605471 AAAATTGGGGGAGAATTACACTTC 57.395 37.500 0.00 0.00 0.00 3.01
548 604 3.732048 TTGGGGGAGAATTACACTTCC 57.268 47.619 0.00 0.00 32.54 3.46
550 606 2.730934 GGGGAGAATTACACTTCCCC 57.269 55.000 11.44 11.44 45.11 4.81
551 607 1.134189 GGGGAGAATTACACTTCCCCG 60.134 57.143 11.44 0.00 45.11 5.73
552 608 1.134189 GGGAGAATTACACTTCCCCGG 60.134 57.143 0.00 0.00 30.77 5.73
553 609 1.664873 GAGAATTACACTTCCCCGGC 58.335 55.000 0.00 0.00 0.00 6.13
554 610 0.255033 AGAATTACACTTCCCCGGCC 59.745 55.000 0.00 0.00 0.00 6.13
555 611 0.255033 GAATTACACTTCCCCGGCCT 59.745 55.000 0.00 0.00 0.00 5.19
556 612 0.255033 AATTACACTTCCCCGGCCTC 59.745 55.000 0.00 0.00 0.00 4.70
557 613 0.620700 ATTACACTTCCCCGGCCTCT 60.621 55.000 0.00 0.00 0.00 3.69
558 614 1.550130 TTACACTTCCCCGGCCTCTG 61.550 60.000 0.00 0.00 0.00 3.35
559 615 4.785453 CACTTCCCCGGCCTCTGC 62.785 72.222 0.00 0.00 0.00 4.26
561 617 4.785453 CTTCCCCGGCCTCTGCAC 62.785 72.222 0.00 0.00 40.13 4.57
566 622 4.335647 CCGGCCTCTGCACCAACT 62.336 66.667 0.00 0.00 40.13 3.16
567 623 2.662596 CGGCCTCTGCACCAACTA 59.337 61.111 0.00 0.00 40.13 2.24
568 624 1.003839 CGGCCTCTGCACCAACTAA 60.004 57.895 0.00 0.00 40.13 2.24
569 625 1.021390 CGGCCTCTGCACCAACTAAG 61.021 60.000 0.00 0.00 40.13 2.18
570 626 0.678048 GGCCTCTGCACCAACTAAGG 60.678 60.000 0.00 0.00 40.13 2.69
571 627 0.324943 GCCTCTGCACCAACTAAGGA 59.675 55.000 0.00 0.00 37.47 3.36
572 628 1.065126 GCCTCTGCACCAACTAAGGAT 60.065 52.381 0.00 0.00 37.47 3.24
573 629 2.636830 CCTCTGCACCAACTAAGGATG 58.363 52.381 0.00 0.00 0.00 3.51
574 630 2.012673 CTCTGCACCAACTAAGGATGC 58.987 52.381 0.00 0.00 36.81 3.91
575 631 1.350684 TCTGCACCAACTAAGGATGCA 59.649 47.619 0.00 0.00 43.70 3.96
576 632 2.025981 TCTGCACCAACTAAGGATGCAT 60.026 45.455 0.00 0.00 44.73 3.96
577 633 3.199727 TCTGCACCAACTAAGGATGCATA 59.800 43.478 0.00 2.75 44.73 3.14
578 634 3.278574 TGCACCAACTAAGGATGCATAC 58.721 45.455 0.00 0.00 41.18 2.39
579 635 2.287915 GCACCAACTAAGGATGCATACG 59.712 50.000 2.46 0.00 36.30 3.06
580 636 2.872245 CACCAACTAAGGATGCATACGG 59.128 50.000 2.46 0.00 0.00 4.02
581 637 2.504175 ACCAACTAAGGATGCATACGGT 59.496 45.455 2.46 0.20 0.00 4.83
582 638 3.131396 CCAACTAAGGATGCATACGGTC 58.869 50.000 2.46 0.00 0.00 4.79
583 639 3.181465 CCAACTAAGGATGCATACGGTCT 60.181 47.826 2.46 0.00 0.00 3.85
584 640 4.442706 CAACTAAGGATGCATACGGTCTT 58.557 43.478 2.46 3.99 0.00 3.01
585 641 4.755266 ACTAAGGATGCATACGGTCTTT 57.245 40.909 2.46 0.00 0.00 2.52
586 642 5.099042 ACTAAGGATGCATACGGTCTTTT 57.901 39.130 2.46 0.00 0.00 2.27
587 643 6.229936 ACTAAGGATGCATACGGTCTTTTA 57.770 37.500 2.46 0.00 0.00 1.52
588 644 6.646267 ACTAAGGATGCATACGGTCTTTTAA 58.354 36.000 2.46 0.00 0.00 1.52
589 645 6.761714 ACTAAGGATGCATACGGTCTTTTAAG 59.238 38.462 2.46 0.00 0.00 1.85
590 646 5.099042 AGGATGCATACGGTCTTTTAAGT 57.901 39.130 2.46 0.00 0.00 2.24
591 647 6.229936 AGGATGCATACGGTCTTTTAAGTA 57.770 37.500 2.46 0.00 0.00 2.24
592 648 6.827727 AGGATGCATACGGTCTTTTAAGTAT 58.172 36.000 2.46 0.00 0.00 2.12
593 649 6.706270 AGGATGCATACGGTCTTTTAAGTATG 59.294 38.462 2.46 9.35 45.34 2.39
594 650 6.704493 GGATGCATACGGTCTTTTAAGTATGA 59.296 38.462 15.84 4.60 45.38 2.15
595 651 7.095607 GGATGCATACGGTCTTTTAAGTATGAG 60.096 40.741 15.84 0.00 45.38 2.90
596 652 6.636705 TGCATACGGTCTTTTAAGTATGAGT 58.363 36.000 15.84 0.00 45.38 3.41
597 653 7.774134 TGCATACGGTCTTTTAAGTATGAGTA 58.226 34.615 15.84 2.09 45.38 2.59
598 654 7.703621 TGCATACGGTCTTTTAAGTATGAGTAC 59.296 37.037 15.84 0.00 45.38 2.73
599 655 7.919621 GCATACGGTCTTTTAAGTATGAGTACT 59.080 37.037 15.84 0.00 45.38 2.73
603 659 9.236006 ACGGTCTTTTAAGTATGAGTACTAAGA 57.764 33.333 0.00 0.00 40.24 2.10
625 681 7.964545 AGATTTTTAATTTCGATTACGCACC 57.035 32.000 0.00 0.00 39.58 5.01
626 682 6.685403 AGATTTTTAATTTCGATTACGCACCG 59.315 34.615 0.00 0.00 39.58 4.94
627 683 5.527511 TTTTAATTTCGATTACGCACCGA 57.472 34.783 0.00 0.00 39.58 4.69
628 684 4.765281 TTAATTTCGATTACGCACCGAG 57.235 40.909 0.00 0.00 39.58 4.63
629 685 0.928229 ATTTCGATTACGCACCGAGC 59.072 50.000 0.00 0.00 39.58 5.03
630 686 1.079875 TTTCGATTACGCACCGAGCC 61.080 55.000 0.00 0.00 41.38 4.70
631 687 1.940883 TTCGATTACGCACCGAGCCT 61.941 55.000 0.00 0.00 41.38 4.58
632 688 1.096967 TCGATTACGCACCGAGCCTA 61.097 55.000 0.00 0.00 41.38 3.93
633 689 0.660595 CGATTACGCACCGAGCCTAG 60.661 60.000 0.00 0.00 41.38 3.02
634 690 0.384669 GATTACGCACCGAGCCTAGT 59.615 55.000 0.00 0.00 41.38 2.57
635 691 0.384669 ATTACGCACCGAGCCTAGTC 59.615 55.000 0.00 0.00 41.38 2.59
636 692 1.660560 TTACGCACCGAGCCTAGTCC 61.661 60.000 0.00 0.00 41.38 3.85
637 693 2.547640 TACGCACCGAGCCTAGTCCT 62.548 60.000 0.00 0.00 41.38 3.85
638 694 2.809010 GCACCGAGCCTAGTCCTC 59.191 66.667 0.00 0.00 37.23 3.71
639 695 2.052690 GCACCGAGCCTAGTCCTCA 61.053 63.158 8.00 0.00 37.23 3.86
640 696 1.605058 GCACCGAGCCTAGTCCTCAA 61.605 60.000 8.00 0.00 37.23 3.02
641 697 1.115467 CACCGAGCCTAGTCCTCAAT 58.885 55.000 8.00 0.00 0.00 2.57
642 698 2.307768 CACCGAGCCTAGTCCTCAATA 58.692 52.381 8.00 0.00 0.00 1.90
643 699 2.693591 CACCGAGCCTAGTCCTCAATAA 59.306 50.000 8.00 0.00 0.00 1.40
644 700 3.132289 CACCGAGCCTAGTCCTCAATAAA 59.868 47.826 8.00 0.00 0.00 1.40
645 701 3.967987 ACCGAGCCTAGTCCTCAATAAAT 59.032 43.478 8.00 0.00 0.00 1.40
646 702 4.202264 ACCGAGCCTAGTCCTCAATAAATG 60.202 45.833 8.00 0.00 0.00 2.32
647 703 3.743396 CGAGCCTAGTCCTCAATAAATGC 59.257 47.826 8.00 0.00 0.00 3.56
648 704 3.733337 AGCCTAGTCCTCAATAAATGCG 58.267 45.455 0.00 0.00 0.00 4.73
649 705 3.134804 AGCCTAGTCCTCAATAAATGCGT 59.865 43.478 0.00 0.00 0.00 5.24
650 706 3.248602 GCCTAGTCCTCAATAAATGCGTG 59.751 47.826 0.00 0.00 0.00 5.34
651 707 4.693283 CCTAGTCCTCAATAAATGCGTGA 58.307 43.478 0.00 0.00 0.00 4.35
652 708 4.747108 CCTAGTCCTCAATAAATGCGTGAG 59.253 45.833 0.00 0.00 38.81 3.51
653 709 4.207891 AGTCCTCAATAAATGCGTGAGT 57.792 40.909 0.00 0.00 37.64 3.41
654 710 5.339008 AGTCCTCAATAAATGCGTGAGTA 57.661 39.130 0.00 0.00 37.64 2.59
655 711 5.109903 AGTCCTCAATAAATGCGTGAGTAC 58.890 41.667 0.00 0.00 37.64 2.73
656 712 4.270325 GTCCTCAATAAATGCGTGAGTACC 59.730 45.833 0.00 0.00 37.64 3.34
657 713 4.081365 TCCTCAATAAATGCGTGAGTACCA 60.081 41.667 0.00 0.00 37.64 3.25
658 714 4.271049 CCTCAATAAATGCGTGAGTACCAG 59.729 45.833 0.00 0.00 37.64 4.00
659 715 5.079689 TCAATAAATGCGTGAGTACCAGA 57.920 39.130 0.00 0.00 0.00 3.86
660 716 5.483811 TCAATAAATGCGTGAGTACCAGAA 58.516 37.500 0.00 0.00 0.00 3.02
661 717 6.112734 TCAATAAATGCGTGAGTACCAGAAT 58.887 36.000 0.00 0.00 0.00 2.40
662 718 6.597672 TCAATAAATGCGTGAGTACCAGAATT 59.402 34.615 0.00 0.00 0.00 2.17
663 719 7.120579 TCAATAAATGCGTGAGTACCAGAATTT 59.879 33.333 0.00 0.00 0.00 1.82
664 720 5.705609 AAATGCGTGAGTACCAGAATTTT 57.294 34.783 0.00 0.00 0.00 1.82
665 721 5.705609 AATGCGTGAGTACCAGAATTTTT 57.294 34.783 0.00 0.00 0.00 1.94
698 754 5.914033 TGTGGATTTGTGGTATAGCTACTC 58.086 41.667 0.00 0.00 0.00 2.59
700 756 5.753921 GTGGATTTGTGGTATAGCTACTCAC 59.246 44.000 13.06 13.06 33.34 3.51
701 757 4.982916 GGATTTGTGGTATAGCTACTCACG 59.017 45.833 14.29 0.00 34.44 4.35
712 768 7.064253 GGTATAGCTACTCACGTTCAAACAAAT 59.936 37.037 0.00 0.00 0.00 2.32
716 772 4.287238 ACTCACGTTCAAACAAATCCAC 57.713 40.909 0.00 0.00 0.00 4.02
763 819 8.922058 ATCTACTCAAACACGTTTATATCGTT 57.078 30.769 0.00 0.00 39.55 3.85
820 876 5.824624 CCTTGCAAGTGACCAACATATCTAT 59.175 40.000 24.35 0.00 0.00 1.98
835 891 0.963962 TCTATCCGGCCGGTTGATAC 59.036 55.000 41.57 0.00 36.47 2.24
874 937 6.662414 TGTTGCAACAGTACATTCTATAGC 57.338 37.500 27.96 0.00 34.30 2.97
930 995 1.146263 CTCACCGGTAGATTGCCCC 59.854 63.158 6.87 0.00 0.00 5.80
931 996 1.613928 TCACCGGTAGATTGCCCCA 60.614 57.895 6.87 0.00 0.00 4.96
946 1011 0.748005 CCCCACTACCATTCCAAGCG 60.748 60.000 0.00 0.00 0.00 4.68
1013 1092 2.275089 CGGCATGATGGGGGTGAA 59.725 61.111 0.00 0.00 0.00 3.18
1168 1247 1.150536 ATGGACGTGGGCAACAACT 59.849 52.632 0.00 0.00 39.74 3.16
1183 1274 1.202722 ACAACTTGTACCTGGGGAACG 60.203 52.381 0.00 0.00 0.00 3.95
1230 1321 2.715624 GGCATCGATTTCACGGGC 59.284 61.111 0.00 0.00 34.94 6.13
1311 1418 0.454957 CGCAGGCACTTTTTCATCGG 60.455 55.000 0.00 0.00 34.60 4.18
1319 1426 3.981416 GCACTTTTTCATCGGGTCTTTTC 59.019 43.478 0.00 0.00 0.00 2.29
1328 1435 6.648879 TCATCGGGTCTTTTCATTTTCTTT 57.351 33.333 0.00 0.00 0.00 2.52
1597 1709 6.349243 TGTTCCGAAGACCTCTTTTACATA 57.651 37.500 0.00 0.00 36.11 2.29
1599 1711 7.391620 TGTTCCGAAGACCTCTTTTACATATT 58.608 34.615 0.00 0.00 36.11 1.28
1600 1712 7.333423 TGTTCCGAAGACCTCTTTTACATATTG 59.667 37.037 0.00 0.00 36.11 1.90
1677 1790 9.434420 TCCATTTTGATGACAATATTTTTGGAC 57.566 29.630 0.00 0.00 35.85 4.02
1678 1791 8.382130 CCATTTTGATGACAATATTTTTGGACG 58.618 33.333 0.00 0.00 35.85 4.79
1679 1792 7.881643 TTTTGATGACAATATTTTTGGACGG 57.118 32.000 0.00 0.00 35.85 4.79
1680 1793 6.825944 TTGATGACAATATTTTTGGACGGA 57.174 33.333 0.00 0.00 0.00 4.69
1681 1794 6.435430 TGATGACAATATTTTTGGACGGAG 57.565 37.500 0.00 0.00 0.00 4.63
1682 1795 5.356751 TGATGACAATATTTTTGGACGGAGG 59.643 40.000 0.00 0.00 0.00 4.30
1683 1796 4.912586 TGACAATATTTTTGGACGGAGGA 58.087 39.130 0.00 0.00 0.00 3.71
1684 1797 5.317808 TGACAATATTTTTGGACGGAGGAA 58.682 37.500 0.00 0.00 0.00 3.36
1731 1844 4.739046 GCTCGCAGCTTTCACATATTAT 57.261 40.909 0.00 0.00 38.45 1.28
1732 1845 4.706527 GCTCGCAGCTTTCACATATTATC 58.293 43.478 0.00 0.00 38.45 1.75
1733 1846 4.450419 GCTCGCAGCTTTCACATATTATCT 59.550 41.667 0.00 0.00 38.45 1.98
1734 1847 5.389307 GCTCGCAGCTTTCACATATTATCTC 60.389 44.000 0.00 0.00 38.45 2.75
1735 1848 5.847304 TCGCAGCTTTCACATATTATCTCT 58.153 37.500 0.00 0.00 0.00 3.10
1736 1849 5.923114 TCGCAGCTTTCACATATTATCTCTC 59.077 40.000 0.00 0.00 0.00 3.20
1737 1850 5.925397 CGCAGCTTTCACATATTATCTCTCT 59.075 40.000 0.00 0.00 0.00 3.10
1738 1851 7.040409 TCGCAGCTTTCACATATTATCTCTCTA 60.040 37.037 0.00 0.00 0.00 2.43
1739 1852 7.061673 CGCAGCTTTCACATATTATCTCTCTAC 59.938 40.741 0.00 0.00 0.00 2.59
1740 1853 7.330700 GCAGCTTTCACATATTATCTCTCTACC 59.669 40.741 0.00 0.00 0.00 3.18
1741 1854 8.363390 CAGCTTTCACATATTATCTCTCTACCA 58.637 37.037 0.00 0.00 0.00 3.25
1742 1855 9.099071 AGCTTTCACATATTATCTCTCTACCAT 57.901 33.333 0.00 0.00 0.00 3.55
1765 1878 9.522804 CCATAATATAATACCTCTCTTTCTCGC 57.477 37.037 0.00 0.00 0.00 5.03
1769 1882 9.832445 AATATAATACCTCTCTTTCTCGCAAAA 57.168 29.630 0.00 0.00 0.00 2.44
1770 1883 9.832445 ATATAATACCTCTCTTTCTCGCAAAAA 57.168 29.630 0.00 0.00 0.00 1.94
1816 1929 9.729281 AACGACTTATATTTAGAAACAAAGGGA 57.271 29.630 0.00 0.00 0.00 4.20
1817 1930 9.901172 ACGACTTATATTTAGAAACAAAGGGAT 57.099 29.630 0.00 0.00 0.00 3.85
1824 1937 6.470557 TTTAGAAACAAAGGGATTACGTCG 57.529 37.500 0.00 0.00 0.00 5.12
1825 1938 3.999046 AGAAACAAAGGGATTACGTCGT 58.001 40.909 2.21 2.21 0.00 4.34
1826 1939 4.383173 AGAAACAAAGGGATTACGTCGTT 58.617 39.130 1.78 0.00 0.00 3.85
1827 1940 4.818005 AGAAACAAAGGGATTACGTCGTTT 59.182 37.500 1.78 0.00 0.00 3.60
1828 1941 5.297527 AGAAACAAAGGGATTACGTCGTTTT 59.702 36.000 1.78 0.00 0.00 2.43
1829 1942 6.482973 AGAAACAAAGGGATTACGTCGTTTTA 59.517 34.615 1.78 0.00 0.00 1.52
1830 1943 5.851047 ACAAAGGGATTACGTCGTTTTAG 57.149 39.130 1.78 0.00 0.00 1.85
1831 1944 4.152938 ACAAAGGGATTACGTCGTTTTAGC 59.847 41.667 1.78 0.00 0.00 3.09
1832 1945 3.598019 AGGGATTACGTCGTTTTAGCA 57.402 42.857 1.78 0.00 0.00 3.49
1833 1946 3.518590 AGGGATTACGTCGTTTTAGCAG 58.481 45.455 1.78 0.00 0.00 4.24
1834 1947 3.056322 AGGGATTACGTCGTTTTAGCAGT 60.056 43.478 1.78 0.00 0.00 4.40
1835 1948 3.681417 GGGATTACGTCGTTTTAGCAGTT 59.319 43.478 1.78 0.00 0.00 3.16
1836 1949 4.201656 GGGATTACGTCGTTTTAGCAGTTC 60.202 45.833 1.78 0.00 0.00 3.01
1837 1950 4.386652 GGATTACGTCGTTTTAGCAGTTCA 59.613 41.667 1.78 0.00 0.00 3.18
1838 1951 5.107375 GGATTACGTCGTTTTAGCAGTTCAA 60.107 40.000 1.78 0.00 0.00 2.69
1843 1956 6.986118 ACGTCGTTTTAGCAGTTCAATATAC 58.014 36.000 0.00 0.00 0.00 1.47
1844 1957 6.587226 ACGTCGTTTTAGCAGTTCAATATACA 59.413 34.615 0.00 0.00 0.00 2.29
1874 1987 0.036388 GCTACAGCCAAGTACCAGCA 60.036 55.000 2.65 0.00 34.31 4.41
1877 1990 3.681594 GCTACAGCCAAGTACCAGCAATA 60.682 47.826 2.65 0.00 34.31 1.90
1878 1991 3.433306 ACAGCCAAGTACCAGCAATAA 57.567 42.857 2.65 0.00 0.00 1.40
1879 1992 3.761897 ACAGCCAAGTACCAGCAATAAA 58.238 40.909 2.65 0.00 0.00 1.40
1880 1993 3.758554 ACAGCCAAGTACCAGCAATAAAG 59.241 43.478 2.65 0.00 0.00 1.85
1881 1994 4.009675 CAGCCAAGTACCAGCAATAAAGA 58.990 43.478 2.65 0.00 0.00 2.52
1882 1995 4.641989 CAGCCAAGTACCAGCAATAAAGAT 59.358 41.667 2.65 0.00 0.00 2.40
1883 1996 5.126061 CAGCCAAGTACCAGCAATAAAGATT 59.874 40.000 2.65 0.00 0.00 2.40
1884 1997 5.358160 AGCCAAGTACCAGCAATAAAGATTC 59.642 40.000 2.65 0.00 0.00 2.52
1885 1998 5.125417 GCCAAGTACCAGCAATAAAGATTCA 59.875 40.000 0.00 0.00 0.00 2.57
1886 1999 6.350110 GCCAAGTACCAGCAATAAAGATTCAA 60.350 38.462 0.00 0.00 0.00 2.69
1887 2000 7.601856 CCAAGTACCAGCAATAAAGATTCAAA 58.398 34.615 0.00 0.00 0.00 2.69
1888 2001 8.087750 CCAAGTACCAGCAATAAAGATTCAAAA 58.912 33.333 0.00 0.00 0.00 2.44
1889 2002 9.474920 CAAGTACCAGCAATAAAGATTCAAAAA 57.525 29.630 0.00 0.00 0.00 1.94
1890 2003 9.476202 AAGTACCAGCAATAAAGATTCAAAAAC 57.524 29.630 0.00 0.00 0.00 2.43
1891 2004 8.637986 AGTACCAGCAATAAAGATTCAAAAACA 58.362 29.630 0.00 0.00 0.00 2.83
1892 2005 9.255304 GTACCAGCAATAAAGATTCAAAAACAA 57.745 29.630 0.00 0.00 0.00 2.83
1893 2006 8.729805 ACCAGCAATAAAGATTCAAAAACAAA 57.270 26.923 0.00 0.00 0.00 2.83
1894 2007 9.171877 ACCAGCAATAAAGATTCAAAAACAAAA 57.828 25.926 0.00 0.00 0.00 2.44
1895 2008 9.437045 CCAGCAATAAAGATTCAAAAACAAAAC 57.563 29.630 0.00 0.00 0.00 2.43
1896 2009 9.985318 CAGCAATAAAGATTCAAAAACAAAACA 57.015 25.926 0.00 0.00 0.00 2.83
1920 2033 9.708092 ACAAAAGACATAAACTAGTACTTCCTC 57.292 33.333 0.00 0.00 0.00 3.71
1921 2034 9.930693 CAAAAGACATAAACTAGTACTTCCTCT 57.069 33.333 0.00 0.00 0.00 3.69
1922 2035 9.930693 AAAAGACATAAACTAGTACTTCCTCTG 57.069 33.333 0.00 0.00 0.00 3.35
1923 2036 8.653036 AAGACATAAACTAGTACTTCCTCTGT 57.347 34.615 0.00 0.00 0.00 3.41
1924 2037 9.750783 AAGACATAAACTAGTACTTCCTCTGTA 57.249 33.333 0.00 0.00 0.00 2.74
1925 2038 9.750783 AGACATAAACTAGTACTTCCTCTGTAA 57.249 33.333 0.00 0.00 0.00 2.41
1992 2105 8.953368 ACACTTTTATATTAGTTTACGGAGGG 57.047 34.615 0.00 0.00 0.00 4.30
1993 2106 8.761689 ACACTTTTATATTAGTTTACGGAGGGA 58.238 33.333 0.00 0.00 0.00 4.20
1994 2107 9.257651 CACTTTTATATTAGTTTACGGAGGGAG 57.742 37.037 0.00 0.00 0.00 4.30
1995 2108 8.985922 ACTTTTATATTAGTTTACGGAGGGAGT 58.014 33.333 0.00 0.00 0.00 3.85
2039 2152 4.169264 TCCCCTTGTCTTAACCCTTTCTTT 59.831 41.667 0.00 0.00 0.00 2.52
2068 2315 2.904434 AGTAGGGAACGAGTTGGTCATT 59.096 45.455 0.00 0.00 0.00 2.57
2074 2321 3.626217 GGAACGAGTTGGTCATTATTCCC 59.374 47.826 0.00 0.00 0.00 3.97
2075 2322 2.901249 ACGAGTTGGTCATTATTCCCG 58.099 47.619 0.00 0.00 0.00 5.14
2078 2325 3.013921 GAGTTGGTCATTATTCCCGCAA 58.986 45.455 0.00 0.00 0.00 4.85
2080 2327 3.829601 AGTTGGTCATTATTCCCGCAAAA 59.170 39.130 0.00 0.00 0.00 2.44
2082 2329 4.448537 TGGTCATTATTCCCGCAAAAAG 57.551 40.909 0.00 0.00 0.00 2.27
2091 2338 2.799871 TCCCGCAAAAAGAAAAACGAC 58.200 42.857 0.00 0.00 0.00 4.34
2105 2352 5.473504 AGAAAAACGACTTGGTCATAATGCT 59.526 36.000 0.00 0.00 32.09 3.79
2110 2357 5.858381 ACGACTTGGTCATAATGCTGATAT 58.142 37.500 0.00 0.00 32.09 1.63
2119 2366 6.128336 GGTCATAATGCTGATATTGTCTGAGC 60.128 42.308 0.00 0.00 0.00 4.26
2125 2372 5.922053 TGCTGATATTGTCTGAGCTACATT 58.078 37.500 0.00 0.00 29.62 2.71
2126 2373 6.351711 TGCTGATATTGTCTGAGCTACATTT 58.648 36.000 0.00 0.00 29.62 2.32
2163 2448 9.248291 CAACAACTTGTGAGCATTATTAGTTTT 57.752 29.630 0.00 0.00 0.00 2.43
2217 2502 8.423906 TCTAAGGATGTCATATCTAAACTCCC 57.576 38.462 0.00 0.00 0.00 4.30
2218 2503 8.010697 TCTAAGGATGTCATATCTAAACTCCCA 58.989 37.037 0.00 0.00 0.00 4.37
2219 2504 6.426646 AGGATGTCATATCTAAACTCCCAC 57.573 41.667 0.00 0.00 0.00 4.61
2220 2505 5.905331 AGGATGTCATATCTAAACTCCCACA 59.095 40.000 0.00 0.00 0.00 4.17
2221 2506 6.386927 AGGATGTCATATCTAAACTCCCACAA 59.613 38.462 0.00 0.00 0.00 3.33
2222 2507 7.054124 GGATGTCATATCTAAACTCCCACAAA 58.946 38.462 0.00 0.00 0.00 2.83
2223 2508 7.721399 GGATGTCATATCTAAACTCCCACAAAT 59.279 37.037 0.00 0.00 0.00 2.32
2224 2509 9.778741 GATGTCATATCTAAACTCCCACAAATA 57.221 33.333 0.00 0.00 0.00 1.40
2226 2511 9.613428 TGTCATATCTAAACTCCCACAAATAAG 57.387 33.333 0.00 0.00 0.00 1.73
2227 2512 9.832445 GTCATATCTAAACTCCCACAAATAAGA 57.168 33.333 0.00 0.00 0.00 2.10
2228 2513 9.832445 TCATATCTAAACTCCCACAAATAAGAC 57.168 33.333 0.00 0.00 0.00 3.01
2229 2514 9.613428 CATATCTAAACTCCCACAAATAAGACA 57.387 33.333 0.00 0.00 0.00 3.41
2231 2516 7.739498 TCTAAACTCCCACAAATAAGACAAC 57.261 36.000 0.00 0.00 0.00 3.32
2232 2517 7.284074 TCTAAACTCCCACAAATAAGACAACA 58.716 34.615 0.00 0.00 0.00 3.33
2233 2518 6.783708 AAACTCCCACAAATAAGACAACAA 57.216 33.333 0.00 0.00 0.00 2.83
2234 2519 5.767816 ACTCCCACAAATAAGACAACAAC 57.232 39.130 0.00 0.00 0.00 3.32
2235 2520 5.197451 ACTCCCACAAATAAGACAACAACA 58.803 37.500 0.00 0.00 0.00 3.33
2236 2521 5.654650 ACTCCCACAAATAAGACAACAACAA 59.345 36.000 0.00 0.00 0.00 2.83
2237 2522 6.142818 TCCCACAAATAAGACAACAACAAG 57.857 37.500 0.00 0.00 0.00 3.16
2238 2523 5.888724 TCCCACAAATAAGACAACAACAAGA 59.111 36.000 0.00 0.00 0.00 3.02
2239 2524 6.378564 TCCCACAAATAAGACAACAACAAGAA 59.621 34.615 0.00 0.00 0.00 2.52
2240 2525 7.038659 CCCACAAATAAGACAACAACAAGAAA 58.961 34.615 0.00 0.00 0.00 2.52
2241 2526 7.010091 CCCACAAATAAGACAACAACAAGAAAC 59.990 37.037 0.00 0.00 0.00 2.78
2242 2527 7.543868 CCACAAATAAGACAACAACAAGAAACA 59.456 33.333 0.00 0.00 0.00 2.83
2243 2528 8.920665 CACAAATAAGACAACAACAAGAAACAA 58.079 29.630 0.00 0.00 0.00 2.83
2244 2529 9.482627 ACAAATAAGACAACAACAAGAAACAAA 57.517 25.926 0.00 0.00 0.00 2.83
2287 2572 9.912634 AAAGACCACAAACATAATAAACATCAG 57.087 29.630 0.00 0.00 0.00 2.90
2288 2573 8.862325 AGACCACAAACATAATAAACATCAGA 57.138 30.769 0.00 0.00 0.00 3.27
2289 2574 9.466497 AGACCACAAACATAATAAACATCAGAT 57.534 29.630 0.00 0.00 0.00 2.90
2324 2609 9.755804 ACATAACTAATGTCACATCTAGATGTG 57.244 33.333 41.65 41.65 46.15 3.21
2340 2625 5.895636 AGATGTGTTCTAGACAGACTCAG 57.104 43.478 0.00 0.00 39.39 3.35
2341 2626 5.321102 AGATGTGTTCTAGACAGACTCAGT 58.679 41.667 0.00 0.00 39.39 3.41
2342 2627 5.772672 AGATGTGTTCTAGACAGACTCAGTT 59.227 40.000 0.00 0.00 39.39 3.16
2343 2628 6.943146 AGATGTGTTCTAGACAGACTCAGTTA 59.057 38.462 0.00 0.00 39.39 2.24
2344 2629 6.561737 TGTGTTCTAGACAGACTCAGTTAG 57.438 41.667 0.00 0.00 39.39 2.34
2345 2630 6.062749 TGTGTTCTAGACAGACTCAGTTAGT 58.937 40.000 0.00 0.00 39.39 2.24
2346 2631 6.546403 TGTGTTCTAGACAGACTCAGTTAGTT 59.454 38.462 0.00 0.00 39.39 2.24
2347 2632 7.079475 GTGTTCTAGACAGACTCAGTTAGTTC 58.921 42.308 0.00 0.00 39.39 3.01
2348 2633 6.771267 TGTTCTAGACAGACTCAGTTAGTTCA 59.229 38.462 0.00 0.00 33.67 3.18
2349 2634 6.804770 TCTAGACAGACTCAGTTAGTTCAC 57.195 41.667 0.00 0.00 39.07 3.18
2350 2635 6.296803 TCTAGACAGACTCAGTTAGTTCACA 58.703 40.000 0.00 0.00 39.07 3.58
2407 2712 5.354792 TGTTTGCATCGATTGATTGATCAGA 59.645 36.000 0.00 0.00 38.19 3.27
2448 2753 1.133668 AGCAAGCAGGTGGAGTTCTTT 60.134 47.619 0.00 0.00 0.00 2.52
2451 2756 0.183492 AGCAGGTGGAGTTCTTTGCA 59.817 50.000 0.00 0.00 34.17 4.08
2472 2777 0.318120 CCACCAAGGCAAACATGACC 59.682 55.000 0.00 0.00 0.00 4.02
2568 2876 1.651987 ACGATATGTTGGCGTTCTGG 58.348 50.000 0.00 0.00 34.12 3.86
2586 2894 1.358046 GGGGAATAGTCCGTCGTCG 59.642 63.158 2.58 0.00 46.04 5.12
2645 2953 5.639506 CCAACTACACCAAGTATGTCAAGAG 59.360 44.000 0.00 0.00 30.93 2.85
2692 3000 2.677003 GGTGTCATCAACGTGCCGG 61.677 63.158 0.00 0.00 0.00 6.13
2741 3049 2.036475 CGAAATCCCTGATCGGTGAGAT 59.964 50.000 0.00 0.00 43.51 2.75
2750 3067 0.103208 ATCGGTGAGATCTGCGAACC 59.897 55.000 0.00 1.57 33.45 3.62
2756 3073 1.347707 TGAGATCTGCGAACCCTTTGT 59.652 47.619 0.00 0.00 0.00 2.83
2772 3089 3.374058 CCTTTGTCAATAAACTCGCCGAT 59.626 43.478 0.00 0.00 0.00 4.18
2977 3299 2.022238 GCAGCTTACCCAATACCACCC 61.022 57.143 0.00 0.00 0.00 4.61
3137 3459 4.022068 GCTTCTTGATGATCAACCCACAAA 60.022 41.667 3.29 0.00 32.21 2.83
3195 3541 5.048643 TCTCTGTTACTAGCACTTCTGTCAC 60.049 44.000 0.00 0.00 0.00 3.67
3216 3563 5.176223 TCACGTTCGTTTTATCCTTGTTCTC 59.824 40.000 0.00 0.00 0.00 2.87
3217 3564 5.050634 CACGTTCGTTTTATCCTTGTTCTCA 60.051 40.000 0.00 0.00 0.00 3.27
3350 4856 1.737696 CGTCGTATAAGTGGGCTGCAA 60.738 52.381 0.50 0.00 0.00 4.08
3408 4935 9.342308 TCATGTTTGATTCCTTACTGAATATCC 57.658 33.333 0.00 0.00 35.15 2.59
3410 4937 9.927081 ATGTTTGATTCCTTACTGAATATCCTT 57.073 29.630 0.00 0.00 35.15 3.36
3481 5016 4.084328 CGCAAAAATCTCGTGTCTTCTCTT 60.084 41.667 0.00 0.00 0.00 2.85
3499 5034 1.207089 CTTAGTGTTCATCAGGGCCGA 59.793 52.381 0.00 0.00 0.00 5.54
3501 5036 0.620556 AGTGTTCATCAGGGCCGATT 59.379 50.000 7.93 0.00 0.00 3.34
3504 5039 2.115427 TGTTCATCAGGGCCGATTCTA 58.885 47.619 7.93 0.00 0.00 2.10
3505 5040 2.503765 TGTTCATCAGGGCCGATTCTAA 59.496 45.455 7.93 2.28 0.00 2.10
3513 5048 3.947834 CAGGGCCGATTCTAAGATTTTGT 59.052 43.478 0.00 0.00 0.00 2.83
3520 5055 3.534357 TTCTAAGATTTTGTGGGCCCA 57.466 42.857 24.45 24.45 0.00 5.36
3547 5082 2.127065 TGAGAATCAGGGGCCCCA 59.873 61.111 42.48 24.62 42.56 4.96
3555 5090 3.833559 ATCAGGGGCCCCAAATATAAG 57.166 47.619 42.48 19.86 38.92 1.73
3556 5091 2.509243 TCAGGGGCCCCAAATATAAGT 58.491 47.619 42.48 16.39 38.92 2.24
3566 5101 5.621329 GCCCCAAATATAAGTGTCACACAAC 60.621 44.000 11.40 0.00 36.74 3.32
3569 5104 6.861055 CCCAAATATAAGTGTCACACAACAAC 59.139 38.462 11.40 0.00 36.74 3.32
3572 5107 9.462174 CAAATATAAGTGTCACACAACAACAAT 57.538 29.630 11.40 0.00 36.74 2.71
3574 5109 6.691754 ATAAGTGTCACACAACAACAATGA 57.308 33.333 11.40 0.00 36.74 2.57
3579 5114 5.339177 TGTCACACAACAACAATGACATTC 58.661 37.500 0.00 0.00 43.48 2.67
3626 5162 9.868277 CTTTACTGCACCCAATTTTGATATTTA 57.132 29.630 0.00 0.00 0.00 1.40
3681 5217 8.514330 AAAGTTTATTATAACATCCCGCTCAA 57.486 30.769 0.00 0.00 0.00 3.02
3682 5218 8.514330 AAGTTTATTATAACATCCCGCTCAAA 57.486 30.769 0.00 0.00 0.00 2.69
3691 5227 0.334676 TCCCGCTCAAAATTGGGGAT 59.665 50.000 4.99 0.00 41.92 3.85
3693 5229 0.381801 CCGCTCAAAATTGGGGATCG 59.618 55.000 0.00 0.00 38.38 3.69
3736 5272 7.789026 TGACACATGATCACTCATTCTTCTAT 58.211 34.615 0.00 0.00 40.20 1.98
3757 5296 4.907879 TTGACATACATGTGCACAAACA 57.092 36.364 25.72 11.82 41.95 2.83
3764 5303 6.255453 ACATACATGTGCACAAACAAAAACTC 59.745 34.615 25.72 0.00 40.03 3.01
3769 5308 4.212214 TGTGCACAAACAAAAACTCCAAAC 59.788 37.500 19.28 0.00 0.00 2.93
3838 5378 6.094742 ACAAATTACCAAACAAAGGCAAAAGG 59.905 34.615 0.00 0.00 0.00 3.11
3839 5379 2.708216 ACCAAACAAAGGCAAAAGGG 57.292 45.000 0.00 0.00 0.00 3.95
3841 5381 1.407989 CCAAACAAAGGCAAAAGGGCA 60.408 47.619 0.00 0.00 46.44 5.36
3845 5385 4.429854 AACAAAGGCAAAAGGGCAATAA 57.570 36.364 0.00 0.00 46.44 1.40
3856 5396 7.599998 GGCAAAAGGGCAATAAATAGATACATG 59.400 37.037 0.00 0.00 42.77 3.21
3858 5398 9.683069 CAAAAGGGCAATAAATAGATACATGAC 57.317 33.333 0.00 0.00 0.00 3.06
3859 5399 8.409358 AAAGGGCAATAAATAGATACATGACC 57.591 34.615 0.00 0.00 34.62 4.02
3861 5401 7.170965 AGGGCAATAAATAGATACATGACCTG 58.829 38.462 0.00 0.00 43.09 4.00
3871 5411 6.662865 AGATACATGACCTGGAGTCTATTG 57.337 41.667 0.00 0.00 46.46 1.90
3895 5435 8.619146 TGAAATAATTCTCGATGCAAATTCAC 57.381 30.769 0.00 0.00 36.48 3.18
3905 5445 7.280652 TCTCGATGCAAATTCACTTATGATTGA 59.719 33.333 0.00 0.00 33.85 2.57
3909 5449 6.545508 TGCAAATTCACTTATGATTGAGTCG 58.454 36.000 0.00 0.00 33.85 4.18
3913 5453 4.386867 TCACTTATGATTGAGTCGGACC 57.613 45.455 4.14 0.00 0.00 4.46
3923 5463 2.151202 TGAGTCGGACCTCAATTTTGC 58.849 47.619 4.14 0.00 38.49 3.68
3937 5477 4.874966 TCAATTTTGCCCAACAGTTTCTTG 59.125 37.500 0.00 0.00 0.00 3.02
3941 5481 2.582052 TGCCCAACAGTTTCTTGTAGG 58.418 47.619 0.00 0.00 0.00 3.18
3948 5488 5.240623 CCAACAGTTTCTTGTAGGTGCATAA 59.759 40.000 0.00 0.00 0.00 1.90
3951 5491 7.611213 ACAGTTTCTTGTAGGTGCATAATAC 57.389 36.000 0.00 0.00 0.00 1.89
3964 5504 5.418676 GTGCATAATACTGCCAAACCATTT 58.581 37.500 0.00 0.00 41.58 2.32
3965 5505 6.406400 GGTGCATAATACTGCCAAACCATTTA 60.406 38.462 0.00 0.00 41.58 1.40
3966 5506 7.038659 GTGCATAATACTGCCAAACCATTTAA 58.961 34.615 0.00 0.00 41.58 1.52
3967 5507 7.010091 GTGCATAATACTGCCAAACCATTTAAC 59.990 37.037 0.00 0.00 41.58 2.01
3968 5508 7.038659 GCATAATACTGCCAAACCATTTAACA 58.961 34.615 0.00 0.00 36.10 2.41
3979 5519 6.586082 CCAAACCATTTAACAGTGCAAGATAC 59.414 38.462 0.00 0.00 0.00 2.24
3991 5531 6.875726 ACAGTGCAAGATACGCATCATATATT 59.124 34.615 0.00 0.00 42.32 1.28
4005 5545 8.186163 CGCATCATATATTTATGTGAAGGCAAT 58.814 33.333 16.72 0.00 37.37 3.56
4083 5623 6.381133 TGATATACCTCATACCAATCGCATCT 59.619 38.462 0.00 0.00 0.00 2.90
4090 5630 1.091771 ACCAATCGCATCTGCTTCCG 61.092 55.000 0.09 0.00 39.32 4.30
4099 5639 2.541762 GCATCTGCTTCCGTGATTAGAC 59.458 50.000 0.00 0.00 38.21 2.59
4101 5641 0.924090 CTGCTTCCGTGATTAGACGC 59.076 55.000 0.00 0.00 38.05 5.19
4109 5649 1.321743 CGTGATTAGACGCTCAGCAAC 59.678 52.381 0.00 0.00 31.56 4.17
4134 5674 3.053455 GCACTCAGCGATATAGTGTTCC 58.947 50.000 14.52 0.00 42.10 3.62
4138 5678 2.292569 TCAGCGATATAGTGTTCCCGTC 59.707 50.000 0.00 0.00 0.00 4.79
4142 5682 2.607282 CGATATAGTGTTCCCGTCTGCC 60.607 54.545 0.00 0.00 0.00 4.85
4143 5683 1.855295 TATAGTGTTCCCGTCTGCCA 58.145 50.000 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.062206 GCGTCGTAGTCCCTCTTCG 59.938 63.158 0.00 0.00 38.09 3.79
107 110 0.696143 TGGTCCTTGACAACCCTGGA 60.696 55.000 0.00 0.00 34.47 3.86
110 113 0.765510 GTCTGGTCCTTGACAACCCT 59.234 55.000 9.67 0.00 34.47 4.34
194 197 1.112113 GTGAGCTTGGTCTCCGGATA 58.888 55.000 3.57 0.00 32.22 2.59
196 199 2.636412 CGTGAGCTTGGTCTCCGGA 61.636 63.158 2.93 2.93 32.22 5.14
245 248 2.362889 AAGATTTGGGGCGCCAGG 60.363 61.111 30.85 0.00 0.00 4.45
246 249 1.250154 TTCAAGATTTGGGGCGCCAG 61.250 55.000 30.85 10.29 0.00 4.85
257 292 0.036732 TGGCAGACGGCTTCAAGATT 59.963 50.000 0.00 0.00 44.01 2.40
303 339 3.770040 CGTCACGATGGGGGCTGA 61.770 66.667 0.00 0.00 0.00 4.26
363 402 2.345244 CGCTTGTGAGGAGCTGGT 59.655 61.111 0.00 0.00 37.99 4.00
376 415 3.083997 CTAGGTGCCCTCCCGCTT 61.084 66.667 0.00 0.00 34.61 4.68
406 445 4.947147 AAGCCTTGCCGTTGCCGA 62.947 61.111 0.00 0.00 36.33 5.54
520 576 8.078060 AGTGTAATTCTCCCCCAATTTTTATG 57.922 34.615 0.00 0.00 0.00 1.90
521 577 8.679344 AAGTGTAATTCTCCCCCAATTTTTAT 57.321 30.769 0.00 0.00 0.00 1.40
522 578 7.179516 GGAAGTGTAATTCTCCCCCAATTTTTA 59.820 37.037 0.00 0.00 0.00 1.52
523 579 6.013725 GGAAGTGTAATTCTCCCCCAATTTTT 60.014 38.462 0.00 0.00 0.00 1.94
524 580 5.483937 GGAAGTGTAATTCTCCCCCAATTTT 59.516 40.000 0.00 0.00 0.00 1.82
525 581 5.023452 GGAAGTGTAATTCTCCCCCAATTT 58.977 41.667 0.00 0.00 0.00 1.82
526 582 4.572007 GGGAAGTGTAATTCTCCCCCAATT 60.572 45.833 0.00 0.00 32.07 2.32
527 583 3.052869 GGGAAGTGTAATTCTCCCCCAAT 60.053 47.826 0.00 0.00 32.07 3.16
528 584 2.310647 GGGAAGTGTAATTCTCCCCCAA 59.689 50.000 0.00 0.00 32.07 4.12
529 585 1.920351 GGGAAGTGTAATTCTCCCCCA 59.080 52.381 0.00 0.00 32.07 4.96
530 586 2.730934 GGGAAGTGTAATTCTCCCCC 57.269 55.000 0.00 0.00 0.00 5.40
531 587 1.134189 CGGGGAAGTGTAATTCTCCCC 60.134 57.143 14.12 14.12 45.66 4.81
532 588 1.134189 CCGGGGAAGTGTAATTCTCCC 60.134 57.143 5.48 6.89 45.66 4.30
533 589 1.746171 GCCGGGGAAGTGTAATTCTCC 60.746 57.143 2.18 0.97 45.08 3.71
534 590 1.664873 GCCGGGGAAGTGTAATTCTC 58.335 55.000 2.18 0.00 0.00 2.87
535 591 0.255033 GGCCGGGGAAGTGTAATTCT 59.745 55.000 2.18 0.00 0.00 2.40
536 592 0.255033 AGGCCGGGGAAGTGTAATTC 59.745 55.000 2.18 0.00 0.00 2.17
537 593 0.255033 GAGGCCGGGGAAGTGTAATT 59.745 55.000 2.18 0.00 0.00 1.40
538 594 0.620700 AGAGGCCGGGGAAGTGTAAT 60.621 55.000 2.18 0.00 0.00 1.89
539 595 1.229400 AGAGGCCGGGGAAGTGTAA 60.229 57.895 2.18 0.00 0.00 2.41
540 596 1.987855 CAGAGGCCGGGGAAGTGTA 60.988 63.158 2.18 0.00 0.00 2.90
541 597 3.322466 CAGAGGCCGGGGAAGTGT 61.322 66.667 2.18 0.00 0.00 3.55
542 598 4.785453 GCAGAGGCCGGGGAAGTG 62.785 72.222 2.18 0.00 0.00 3.16
544 600 4.785453 GTGCAGAGGCCGGGGAAG 62.785 72.222 2.18 0.00 40.13 3.46
549 605 2.463589 TTAGTTGGTGCAGAGGCCGG 62.464 60.000 0.00 0.00 40.13 6.13
550 606 1.003839 TTAGTTGGTGCAGAGGCCG 60.004 57.895 0.00 0.00 40.13 6.13
551 607 0.678048 CCTTAGTTGGTGCAGAGGCC 60.678 60.000 0.00 0.00 40.13 5.19
552 608 0.324943 TCCTTAGTTGGTGCAGAGGC 59.675 55.000 0.00 0.00 41.68 4.70
553 609 2.636830 CATCCTTAGTTGGTGCAGAGG 58.363 52.381 0.00 0.00 0.00 3.69
554 610 2.012673 GCATCCTTAGTTGGTGCAGAG 58.987 52.381 0.00 0.00 35.63 3.35
555 611 1.350684 TGCATCCTTAGTTGGTGCAGA 59.649 47.619 0.00 0.00 38.34 4.26
556 612 1.825090 TGCATCCTTAGTTGGTGCAG 58.175 50.000 0.00 0.00 38.34 4.41
557 613 2.512692 ATGCATCCTTAGTTGGTGCA 57.487 45.000 0.17 0.17 43.02 4.57
558 614 2.287915 CGTATGCATCCTTAGTTGGTGC 59.712 50.000 0.19 0.00 35.89 5.01
559 615 2.872245 CCGTATGCATCCTTAGTTGGTG 59.128 50.000 0.19 0.00 0.00 4.17
560 616 2.504175 ACCGTATGCATCCTTAGTTGGT 59.496 45.455 0.19 0.00 0.00 3.67
561 617 3.131396 GACCGTATGCATCCTTAGTTGG 58.869 50.000 0.19 0.00 0.00 3.77
562 618 4.060038 AGACCGTATGCATCCTTAGTTG 57.940 45.455 0.19 0.00 0.00 3.16
563 619 4.755266 AAGACCGTATGCATCCTTAGTT 57.245 40.909 0.19 0.00 0.00 2.24
564 620 4.755266 AAAGACCGTATGCATCCTTAGT 57.245 40.909 0.19 0.00 0.00 2.24
565 621 6.761714 ACTTAAAAGACCGTATGCATCCTTAG 59.238 38.462 0.19 0.00 0.00 2.18
566 622 6.646267 ACTTAAAAGACCGTATGCATCCTTA 58.354 36.000 0.19 0.00 0.00 2.69
567 623 5.497474 ACTTAAAAGACCGTATGCATCCTT 58.503 37.500 0.19 0.00 0.00 3.36
568 624 5.099042 ACTTAAAAGACCGTATGCATCCT 57.901 39.130 0.19 0.00 0.00 3.24
569 625 6.704493 TCATACTTAAAAGACCGTATGCATCC 59.296 38.462 0.19 0.00 39.17 3.51
570 626 7.438459 ACTCATACTTAAAAGACCGTATGCATC 59.562 37.037 0.19 0.00 39.17 3.91
571 627 7.272978 ACTCATACTTAAAAGACCGTATGCAT 58.727 34.615 3.79 3.79 39.17 3.96
572 628 6.636705 ACTCATACTTAAAAGACCGTATGCA 58.363 36.000 0.00 0.00 39.17 3.96
573 629 7.919621 AGTACTCATACTTAAAAGACCGTATGC 59.080 37.037 0.00 0.00 38.59 3.14
577 633 9.236006 TCTTAGTACTCATACTTAAAAGACCGT 57.764 33.333 0.00 0.00 41.99 4.83
599 655 9.493206 GGTGCGTAATCGAAATTAAAAATCTTA 57.507 29.630 0.00 0.00 39.71 2.10
600 656 7.217447 CGGTGCGTAATCGAAATTAAAAATCTT 59.783 33.333 0.00 0.00 39.71 2.40
601 657 6.685403 CGGTGCGTAATCGAAATTAAAAATCT 59.315 34.615 0.00 0.00 39.71 2.40
602 658 6.683708 TCGGTGCGTAATCGAAATTAAAAATC 59.316 34.615 0.00 0.00 39.71 2.17
603 659 6.544622 TCGGTGCGTAATCGAAATTAAAAAT 58.455 32.000 0.00 0.00 39.71 1.82
604 660 5.924786 TCGGTGCGTAATCGAAATTAAAAA 58.075 33.333 0.00 0.00 39.71 1.94
605 661 5.527511 TCGGTGCGTAATCGAAATTAAAA 57.472 34.783 0.00 0.00 39.71 1.52
606 662 4.492895 GCTCGGTGCGTAATCGAAATTAAA 60.493 41.667 0.00 0.00 39.71 1.52
607 663 3.000523 GCTCGGTGCGTAATCGAAATTAA 59.999 43.478 0.00 0.00 39.71 1.40
608 664 2.536803 GCTCGGTGCGTAATCGAAATTA 59.463 45.455 0.00 0.00 39.71 1.40
609 665 1.326548 GCTCGGTGCGTAATCGAAATT 59.673 47.619 0.00 0.00 39.71 1.82
610 666 0.928229 GCTCGGTGCGTAATCGAAAT 59.072 50.000 0.00 0.00 39.71 2.17
611 667 1.079875 GGCTCGGTGCGTAATCGAAA 61.080 55.000 0.00 0.00 44.05 3.46
612 668 1.517694 GGCTCGGTGCGTAATCGAA 60.518 57.895 0.00 0.00 44.05 3.71
613 669 1.096967 TAGGCTCGGTGCGTAATCGA 61.097 55.000 0.00 0.00 44.05 3.59
614 670 0.660595 CTAGGCTCGGTGCGTAATCG 60.661 60.000 0.00 0.00 44.05 3.34
615 671 0.384669 ACTAGGCTCGGTGCGTAATC 59.615 55.000 0.00 0.00 44.05 1.75
616 672 0.384669 GACTAGGCTCGGTGCGTAAT 59.615 55.000 0.00 0.00 44.05 1.89
617 673 1.660560 GGACTAGGCTCGGTGCGTAA 61.661 60.000 0.00 0.00 44.05 3.18
618 674 2.117156 GGACTAGGCTCGGTGCGTA 61.117 63.158 0.00 4.65 44.05 4.42
619 675 3.450115 GGACTAGGCTCGGTGCGT 61.450 66.667 0.00 2.72 44.05 5.24
620 676 3.127352 GAGGACTAGGCTCGGTGCG 62.127 68.421 0.00 0.00 44.05 5.34
621 677 1.605058 TTGAGGACTAGGCTCGGTGC 61.605 60.000 0.00 0.00 41.94 5.01
622 678 1.115467 ATTGAGGACTAGGCTCGGTG 58.885 55.000 0.00 0.00 0.00 4.94
623 679 2.750141 TATTGAGGACTAGGCTCGGT 57.250 50.000 0.00 0.00 0.00 4.69
624 680 4.310769 CATTTATTGAGGACTAGGCTCGG 58.689 47.826 0.00 0.00 0.00 4.63
625 681 3.743396 GCATTTATTGAGGACTAGGCTCG 59.257 47.826 0.00 0.00 0.00 5.03
626 682 3.743396 CGCATTTATTGAGGACTAGGCTC 59.257 47.826 0.00 0.00 0.00 4.70
627 683 3.134804 ACGCATTTATTGAGGACTAGGCT 59.865 43.478 0.00 0.00 0.00 4.58
628 684 3.248602 CACGCATTTATTGAGGACTAGGC 59.751 47.826 0.00 0.00 0.00 3.93
629 685 4.693283 TCACGCATTTATTGAGGACTAGG 58.307 43.478 0.00 0.00 0.00 3.02
630 686 5.352284 ACTCACGCATTTATTGAGGACTAG 58.648 41.667 3.09 0.00 41.00 2.57
631 687 5.339008 ACTCACGCATTTATTGAGGACTA 57.661 39.130 3.09 0.00 41.00 2.59
632 688 4.207891 ACTCACGCATTTATTGAGGACT 57.792 40.909 3.09 0.00 41.00 3.85
633 689 4.270325 GGTACTCACGCATTTATTGAGGAC 59.730 45.833 4.84 4.84 46.57 3.85
634 690 4.081365 TGGTACTCACGCATTTATTGAGGA 60.081 41.667 3.09 0.00 41.00 3.71
635 691 4.188462 TGGTACTCACGCATTTATTGAGG 58.812 43.478 3.09 0.00 41.00 3.86
636 692 5.109210 TCTGGTACTCACGCATTTATTGAG 58.891 41.667 0.00 0.00 42.17 3.02
637 693 5.079689 TCTGGTACTCACGCATTTATTGA 57.920 39.130 0.00 0.00 0.00 2.57
638 694 5.794687 TTCTGGTACTCACGCATTTATTG 57.205 39.130 0.00 0.00 0.00 1.90
639 695 7.391148 AAATTCTGGTACTCACGCATTTATT 57.609 32.000 0.00 0.00 0.00 1.40
640 696 7.391148 AAAATTCTGGTACTCACGCATTTAT 57.609 32.000 0.00 0.00 0.00 1.40
641 697 6.811253 AAAATTCTGGTACTCACGCATTTA 57.189 33.333 0.00 0.00 0.00 1.40
642 698 5.705609 AAAATTCTGGTACTCACGCATTT 57.294 34.783 0.00 0.00 0.00 2.32
643 699 5.705609 AAAAATTCTGGTACTCACGCATT 57.294 34.783 0.00 0.00 0.00 3.56
664 720 7.693969 ACCACAAATCCACAAAATTCAAAAA 57.306 28.000 0.00 0.00 0.00 1.94
665 721 8.970859 ATACCACAAATCCACAAAATTCAAAA 57.029 26.923 0.00 0.00 0.00 2.44
666 722 9.703892 CTATACCACAAATCCACAAAATTCAAA 57.296 29.630 0.00 0.00 0.00 2.69
667 723 7.816995 GCTATACCACAAATCCACAAAATTCAA 59.183 33.333 0.00 0.00 0.00 2.69
668 724 7.178274 AGCTATACCACAAATCCACAAAATTCA 59.822 33.333 0.00 0.00 0.00 2.57
669 725 7.547227 AGCTATACCACAAATCCACAAAATTC 58.453 34.615 0.00 0.00 0.00 2.17
670 726 7.480760 AGCTATACCACAAATCCACAAAATT 57.519 32.000 0.00 0.00 0.00 1.82
671 727 7.834181 AGTAGCTATACCACAAATCCACAAAAT 59.166 33.333 0.00 0.00 31.78 1.82
672 728 7.172342 AGTAGCTATACCACAAATCCACAAAA 58.828 34.615 0.00 0.00 31.78 2.44
673 729 6.717289 AGTAGCTATACCACAAATCCACAAA 58.283 36.000 0.00 0.00 31.78 2.83
674 730 6.070481 TGAGTAGCTATACCACAAATCCACAA 60.070 38.462 0.00 0.00 31.78 3.33
675 731 5.423931 TGAGTAGCTATACCACAAATCCACA 59.576 40.000 0.00 0.00 31.78 4.17
676 732 5.753921 GTGAGTAGCTATACCACAAATCCAC 59.246 44.000 14.33 0.00 35.18 4.02
677 733 5.451381 CGTGAGTAGCTATACCACAAATCCA 60.451 44.000 17.39 0.00 34.96 3.41
678 734 4.982916 CGTGAGTAGCTATACCACAAATCC 59.017 45.833 17.39 0.00 34.96 3.01
679 735 5.589192 ACGTGAGTAGCTATACCACAAATC 58.411 41.667 17.39 0.00 46.88 2.17
680 736 5.593679 ACGTGAGTAGCTATACCACAAAT 57.406 39.130 17.39 5.46 46.88 2.32
698 754 5.964887 ATTTGTGGATTTGTTTGAACGTG 57.035 34.783 0.00 0.00 0.00 4.49
700 756 7.683746 AGAAAATTTGTGGATTTGTTTGAACG 58.316 30.769 0.00 0.00 30.06 3.95
701 757 9.838975 AAAGAAAATTTGTGGATTTGTTTGAAC 57.161 25.926 0.00 0.00 30.06 3.18
712 768 7.725251 ACTATTGCTGAAAGAAAATTTGTGGA 58.275 30.769 0.00 0.00 33.13 4.02
763 819 4.571580 CCGAGTTAAATACCGCAATTACCA 59.428 41.667 0.00 0.00 0.00 3.25
835 891 3.705638 CAGCACTCACGCACGTGG 61.706 66.667 21.73 14.86 45.43 4.94
874 937 2.973945 GCCCTCCTGCCTATTTATACG 58.026 52.381 0.00 0.00 0.00 3.06
902 965 0.981183 TACCGGTGAGTTGGAGCAAT 59.019 50.000 19.93 0.00 0.00 3.56
930 995 0.447801 GTGCGCTTGGAATGGTAGTG 59.552 55.000 9.73 0.00 0.00 2.74
931 996 0.036164 TGTGCGCTTGGAATGGTAGT 59.964 50.000 9.73 0.00 0.00 2.73
946 1011 1.012841 GCAGAGTAGCTGGAATGTGC 58.987 55.000 0.00 0.00 45.03 4.57
998 1077 0.819582 CACTTTCACCCCCATCATGC 59.180 55.000 0.00 0.00 0.00 4.06
1168 1247 1.000731 CGTAACGTTCCCCAGGTACAA 59.999 52.381 2.82 0.00 0.00 2.41
1183 1274 1.593479 GGGGATACGGCAGCGTAAC 60.593 63.158 0.00 0.00 37.60 2.50
1230 1321 4.404098 CTTCCGTTGGGTCCGGGG 62.404 72.222 0.00 0.00 45.51 5.73
1341 1448 3.058914 GGTGAAAAGACACGATGACCTTG 60.059 47.826 0.00 0.00 41.12 3.61
1484 1596 2.267961 GTAGTTGACCCCGCCCAG 59.732 66.667 0.00 0.00 0.00 4.45
1597 1709 8.907222 ATGTATTCCTGCAAAAGAAAAACAAT 57.093 26.923 12.37 0.00 30.52 2.71
1599 1711 9.995003 AATATGTATTCCTGCAAAAGAAAAACA 57.005 25.926 11.44 11.44 0.00 2.83
1660 1773 5.505780 TCCTCCGTCCAAAAATATTGTCAT 58.494 37.500 0.00 0.00 0.00 3.06
1661 1774 4.912586 TCCTCCGTCCAAAAATATTGTCA 58.087 39.130 0.00 0.00 0.00 3.58
1662 1775 5.890424 TTCCTCCGTCCAAAAATATTGTC 57.110 39.130 0.00 0.00 0.00 3.18
1663 1776 6.850752 ATTTCCTCCGTCCAAAAATATTGT 57.149 33.333 0.00 0.00 0.00 2.71
1714 1827 7.330700 GGTAGAGAGATAATATGTGAAAGCTGC 59.669 40.741 0.00 0.00 0.00 5.25
1739 1852 9.522804 GCGAGAAAGAGAGGTATTATATTATGG 57.477 37.037 0.00 0.00 0.00 2.74
1743 1856 9.832445 TTTTGCGAGAAAGAGAGGTATTATATT 57.168 29.630 0.00 0.00 0.00 1.28
1744 1857 9.832445 TTTTTGCGAGAAAGAGAGGTATTATAT 57.168 29.630 0.00 0.00 0.00 0.86
1790 1903 9.729281 TCCCTTTGTTTCTAAATATAAGTCGTT 57.271 29.630 0.00 0.00 0.00 3.85
1791 1904 9.901172 ATCCCTTTGTTTCTAAATATAAGTCGT 57.099 29.630 0.00 0.00 0.00 4.34
1798 1911 8.823818 CGACGTAATCCCTTTGTTTCTAAATAT 58.176 33.333 0.00 0.00 0.00 1.28
1799 1912 7.818930 ACGACGTAATCCCTTTGTTTCTAAATA 59.181 33.333 0.00 0.00 0.00 1.40
1800 1913 6.652062 ACGACGTAATCCCTTTGTTTCTAAAT 59.348 34.615 0.00 0.00 0.00 1.40
1801 1914 5.990996 ACGACGTAATCCCTTTGTTTCTAAA 59.009 36.000 0.00 0.00 0.00 1.85
1802 1915 5.540911 ACGACGTAATCCCTTTGTTTCTAA 58.459 37.500 0.00 0.00 0.00 2.10
1803 1916 5.138125 ACGACGTAATCCCTTTGTTTCTA 57.862 39.130 0.00 0.00 0.00 2.10
1804 1917 3.999046 ACGACGTAATCCCTTTGTTTCT 58.001 40.909 0.00 0.00 0.00 2.52
1805 1918 4.737353 AACGACGTAATCCCTTTGTTTC 57.263 40.909 0.00 0.00 0.00 2.78
1806 1919 5.503662 AAAACGACGTAATCCCTTTGTTT 57.496 34.783 0.00 0.00 0.00 2.83
1807 1920 5.334337 GCTAAAACGACGTAATCCCTTTGTT 60.334 40.000 0.00 0.00 0.00 2.83
1808 1921 4.152938 GCTAAAACGACGTAATCCCTTTGT 59.847 41.667 0.00 0.00 0.00 2.83
1809 1922 4.152759 TGCTAAAACGACGTAATCCCTTTG 59.847 41.667 0.00 0.00 0.00 2.77
1810 1923 4.317488 TGCTAAAACGACGTAATCCCTTT 58.683 39.130 0.00 0.00 0.00 3.11
1811 1924 3.929094 TGCTAAAACGACGTAATCCCTT 58.071 40.909 0.00 0.00 0.00 3.95
1812 1925 3.056322 ACTGCTAAAACGACGTAATCCCT 60.056 43.478 0.00 0.00 0.00 4.20
1813 1926 3.256558 ACTGCTAAAACGACGTAATCCC 58.743 45.455 0.00 0.00 0.00 3.85
1814 1927 4.386652 TGAACTGCTAAAACGACGTAATCC 59.613 41.667 0.00 0.00 0.00 3.01
1815 1928 5.505165 TGAACTGCTAAAACGACGTAATC 57.495 39.130 0.00 0.00 0.00 1.75
1816 1929 5.910637 TTGAACTGCTAAAACGACGTAAT 57.089 34.783 0.00 0.00 0.00 1.89
1817 1930 5.910637 ATTGAACTGCTAAAACGACGTAA 57.089 34.783 0.00 0.00 0.00 3.18
1818 1931 7.754475 TGTATATTGAACTGCTAAAACGACGTA 59.246 33.333 0.00 0.00 0.00 3.57
1819 1932 6.587226 TGTATATTGAACTGCTAAAACGACGT 59.413 34.615 0.00 0.00 0.00 4.34
1820 1933 6.985013 TGTATATTGAACTGCTAAAACGACG 58.015 36.000 0.00 0.00 0.00 5.12
1821 1934 9.601971 TTTTGTATATTGAACTGCTAAAACGAC 57.398 29.630 0.00 0.00 0.00 4.34
1862 1975 6.757897 TGAATCTTTATTGCTGGTACTTGG 57.242 37.500 0.00 0.00 0.00 3.61
1894 2007 9.708092 GAGGAAGTACTAGTTTATGTCTTTTGT 57.292 33.333 0.00 0.00 0.00 2.83
1895 2008 9.930693 AGAGGAAGTACTAGTTTATGTCTTTTG 57.069 33.333 0.00 0.00 0.00 2.44
1896 2009 9.930693 CAGAGGAAGTACTAGTTTATGTCTTTT 57.069 33.333 0.00 0.00 0.00 2.27
1966 2079 9.387257 CCCTCCGTAAACTAATATAAAAGTGTT 57.613 33.333 0.00 0.00 0.00 3.32
1967 2080 8.761689 TCCCTCCGTAAACTAATATAAAAGTGT 58.238 33.333 0.00 0.00 0.00 3.55
1968 2081 9.257651 CTCCCTCCGTAAACTAATATAAAAGTG 57.742 37.037 0.00 0.00 0.00 3.16
1969 2082 8.985922 ACTCCCTCCGTAAACTAATATAAAAGT 58.014 33.333 0.00 0.00 0.00 2.66
1975 2088 9.118300 CGATATACTCCCTCCGTAAACTAATAT 57.882 37.037 0.00 0.00 0.00 1.28
1976 2089 7.554118 CCGATATACTCCCTCCGTAAACTAATA 59.446 40.741 0.00 0.00 0.00 0.98
1977 2090 6.376581 CCGATATACTCCCTCCGTAAACTAAT 59.623 42.308 0.00 0.00 0.00 1.73
1978 2091 5.707298 CCGATATACTCCCTCCGTAAACTAA 59.293 44.000 0.00 0.00 0.00 2.24
1979 2092 5.248640 CCGATATACTCCCTCCGTAAACTA 58.751 45.833 0.00 0.00 0.00 2.24
1980 2093 4.077822 CCGATATACTCCCTCCGTAAACT 58.922 47.826 0.00 0.00 0.00 2.66
1981 2094 3.192212 CCCGATATACTCCCTCCGTAAAC 59.808 52.174 0.00 0.00 0.00 2.01
1982 2095 3.074390 TCCCGATATACTCCCTCCGTAAA 59.926 47.826 0.00 0.00 0.00 2.01
1983 2096 2.644299 TCCCGATATACTCCCTCCGTAA 59.356 50.000 0.00 0.00 0.00 3.18
1984 2097 2.269023 TCCCGATATACTCCCTCCGTA 58.731 52.381 0.00 0.00 0.00 4.02
1985 2098 1.070604 TCCCGATATACTCCCTCCGT 58.929 55.000 0.00 0.00 0.00 4.69
1986 2099 2.211250 TTCCCGATATACTCCCTCCG 57.789 55.000 0.00 0.00 0.00 4.63
1987 2100 3.261137 CCTTTTCCCGATATACTCCCTCC 59.739 52.174 0.00 0.00 0.00 4.30
1988 2101 3.261137 CCCTTTTCCCGATATACTCCCTC 59.739 52.174 0.00 0.00 0.00 4.30
1989 2102 3.248888 CCCTTTTCCCGATATACTCCCT 58.751 50.000 0.00 0.00 0.00 4.20
1990 2103 2.290134 GCCCTTTTCCCGATATACTCCC 60.290 54.545 0.00 0.00 0.00 4.30
1991 2104 2.638363 AGCCCTTTTCCCGATATACTCC 59.362 50.000 0.00 0.00 0.00 3.85
1992 2105 5.046520 ACATAGCCCTTTTCCCGATATACTC 60.047 44.000 0.00 0.00 0.00 2.59
1993 2106 4.844655 ACATAGCCCTTTTCCCGATATACT 59.155 41.667 0.00 0.00 0.00 2.12
1994 2107 5.161943 ACATAGCCCTTTTCCCGATATAC 57.838 43.478 0.00 0.00 0.00 1.47
1995 2108 4.224370 GGACATAGCCCTTTTCCCGATATA 59.776 45.833 0.00 0.00 0.00 0.86
1996 2109 3.009143 GGACATAGCCCTTTTCCCGATAT 59.991 47.826 0.00 0.00 0.00 1.63
1997 2110 2.370849 GGACATAGCCCTTTTCCCGATA 59.629 50.000 0.00 0.00 0.00 2.92
1998 2111 1.143073 GGACATAGCCCTTTTCCCGAT 59.857 52.381 0.00 0.00 0.00 4.18
2039 2152 5.510179 CCAACTCGTTCCCTACTTTAAGACA 60.510 44.000 0.00 0.00 0.00 3.41
2068 2315 4.977347 GTCGTTTTTCTTTTTGCGGGAATA 59.023 37.500 0.00 0.00 0.00 1.75
2074 2321 3.610677 ACCAAGTCGTTTTTCTTTTTGCG 59.389 39.130 0.00 0.00 0.00 4.85
2075 2322 4.623595 TGACCAAGTCGTTTTTCTTTTTGC 59.376 37.500 0.00 0.00 34.95 3.68
2078 2325 7.169140 GCATTATGACCAAGTCGTTTTTCTTTT 59.831 33.333 0.00 0.00 34.95 2.27
2080 2327 6.016276 AGCATTATGACCAAGTCGTTTTTCTT 60.016 34.615 0.00 0.00 34.95 2.52
2082 2329 5.569059 CAGCATTATGACCAAGTCGTTTTTC 59.431 40.000 0.00 0.00 34.95 2.29
2091 2338 7.443272 TCAGACAATATCAGCATTATGACCAAG 59.557 37.037 0.00 0.00 30.46 3.61
2191 2476 8.871125 GGGAGTTTAGATATGACATCCTTAGAA 58.129 37.037 0.00 0.00 0.00 2.10
2192 2477 8.010697 TGGGAGTTTAGATATGACATCCTTAGA 58.989 37.037 0.00 0.00 0.00 2.10
2193 2478 8.091449 GTGGGAGTTTAGATATGACATCCTTAG 58.909 40.741 0.00 0.00 0.00 2.18
2194 2479 7.567250 TGTGGGAGTTTAGATATGACATCCTTA 59.433 37.037 0.00 0.00 0.00 2.69
2195 2480 6.386927 TGTGGGAGTTTAGATATGACATCCTT 59.613 38.462 0.00 0.00 0.00 3.36
2196 2481 5.905331 TGTGGGAGTTTAGATATGACATCCT 59.095 40.000 0.00 0.00 0.00 3.24
2197 2482 6.174720 TGTGGGAGTTTAGATATGACATCC 57.825 41.667 0.00 0.00 0.00 3.51
2198 2483 8.682936 ATTTGTGGGAGTTTAGATATGACATC 57.317 34.615 0.00 0.00 0.00 3.06
2200 2485 9.613428 CTTATTTGTGGGAGTTTAGATATGACA 57.387 33.333 0.00 0.00 0.00 3.58
2201 2486 9.832445 TCTTATTTGTGGGAGTTTAGATATGAC 57.168 33.333 0.00 0.00 0.00 3.06
2202 2487 9.832445 GTCTTATTTGTGGGAGTTTAGATATGA 57.168 33.333 0.00 0.00 0.00 2.15
2203 2488 9.613428 TGTCTTATTTGTGGGAGTTTAGATATG 57.387 33.333 0.00 0.00 0.00 1.78
2205 2490 9.444600 GTTGTCTTATTTGTGGGAGTTTAGATA 57.555 33.333 0.00 0.00 0.00 1.98
2206 2491 7.942341 TGTTGTCTTATTTGTGGGAGTTTAGAT 59.058 33.333 0.00 0.00 0.00 1.98
2207 2492 7.284074 TGTTGTCTTATTTGTGGGAGTTTAGA 58.716 34.615 0.00 0.00 0.00 2.10
2208 2493 7.504924 TGTTGTCTTATTTGTGGGAGTTTAG 57.495 36.000 0.00 0.00 0.00 1.85
2209 2494 7.339721 TGTTGTTGTCTTATTTGTGGGAGTTTA 59.660 33.333 0.00 0.00 0.00 2.01
2210 2495 6.153680 TGTTGTTGTCTTATTTGTGGGAGTTT 59.846 34.615 0.00 0.00 0.00 2.66
2211 2496 5.654650 TGTTGTTGTCTTATTTGTGGGAGTT 59.345 36.000 0.00 0.00 0.00 3.01
2212 2497 5.197451 TGTTGTTGTCTTATTTGTGGGAGT 58.803 37.500 0.00 0.00 0.00 3.85
2213 2498 5.766150 TGTTGTTGTCTTATTTGTGGGAG 57.234 39.130 0.00 0.00 0.00 4.30
2214 2499 5.888724 TCTTGTTGTTGTCTTATTTGTGGGA 59.111 36.000 0.00 0.00 0.00 4.37
2215 2500 6.142818 TCTTGTTGTTGTCTTATTTGTGGG 57.857 37.500 0.00 0.00 0.00 4.61
2216 2501 7.543868 TGTTTCTTGTTGTTGTCTTATTTGTGG 59.456 33.333 0.00 0.00 0.00 4.17
2217 2502 8.459521 TGTTTCTTGTTGTTGTCTTATTTGTG 57.540 30.769 0.00 0.00 0.00 3.33
2218 2503 9.482627 TTTGTTTCTTGTTGTTGTCTTATTTGT 57.517 25.926 0.00 0.00 0.00 2.83
2261 2546 9.912634 CTGATGTTTATTATGTTTGTGGTCTTT 57.087 29.630 0.00 0.00 0.00 2.52
2262 2547 9.295825 TCTGATGTTTATTATGTTTGTGGTCTT 57.704 29.630 0.00 0.00 0.00 3.01
2263 2548 8.862325 TCTGATGTTTATTATGTTTGTGGTCT 57.138 30.769 0.00 0.00 0.00 3.85
2317 2602 6.477253 ACTGAGTCTGTCTAGAACACATCTA 58.523 40.000 0.00 0.00 39.71 1.98
2318 2603 5.321102 ACTGAGTCTGTCTAGAACACATCT 58.679 41.667 0.00 0.00 42.48 2.90
2319 2604 5.637006 ACTGAGTCTGTCTAGAACACATC 57.363 43.478 0.00 0.00 34.01 3.06
2320 2605 6.717540 ACTAACTGAGTCTGTCTAGAACACAT 59.282 38.462 17.75 0.23 29.95 3.21
2321 2606 6.062749 ACTAACTGAGTCTGTCTAGAACACA 58.937 40.000 17.75 0.00 29.95 3.72
2322 2607 6.563222 ACTAACTGAGTCTGTCTAGAACAC 57.437 41.667 17.75 0.00 29.95 3.32
2323 2608 6.771267 TGAACTAACTGAGTCTGTCTAGAACA 59.229 38.462 17.75 14.70 37.44 3.18
2324 2609 7.079475 GTGAACTAACTGAGTCTGTCTAGAAC 58.921 42.308 17.75 0.00 37.44 3.01
2325 2610 6.771267 TGTGAACTAACTGAGTCTGTCTAGAA 59.229 38.462 17.75 0.00 37.44 2.10
2326 2611 6.296803 TGTGAACTAACTGAGTCTGTCTAGA 58.703 40.000 17.75 0.00 37.44 2.43
2327 2612 6.561737 TGTGAACTAACTGAGTCTGTCTAG 57.438 41.667 2.84 9.51 37.44 2.43
2328 2613 6.954487 TTGTGAACTAACTGAGTCTGTCTA 57.046 37.500 2.84 0.00 37.44 2.59
2329 2614 5.854010 TTGTGAACTAACTGAGTCTGTCT 57.146 39.130 2.84 0.00 37.44 3.41
2330 2615 5.986135 ACATTGTGAACTAACTGAGTCTGTC 59.014 40.000 2.84 0.00 37.44 3.51
2331 2616 5.918608 ACATTGTGAACTAACTGAGTCTGT 58.081 37.500 0.00 0.00 37.44 3.41
2332 2617 6.145209 CAGACATTGTGAACTAACTGAGTCTG 59.855 42.308 0.00 0.00 41.90 3.51
2333 2618 6.040955 TCAGACATTGTGAACTAACTGAGTCT 59.959 38.462 0.00 0.00 37.44 3.24
2334 2619 6.216569 TCAGACATTGTGAACTAACTGAGTC 58.783 40.000 0.00 0.00 37.44 3.36
2335 2620 6.161855 TCAGACATTGTGAACTAACTGAGT 57.838 37.500 0.00 0.00 41.56 3.41
2336 2621 6.702972 CTCAGACATTGTGAACTAACTGAG 57.297 41.667 12.33 12.33 42.10 3.35
2337 2622 6.161855 ACTCAGACATTGTGAACTAACTGA 57.838 37.500 0.00 0.00 0.00 3.41
2338 2623 6.851222 AACTCAGACATTGTGAACTAACTG 57.149 37.500 0.00 0.00 0.00 3.16
2339 2624 7.727181 AGTAACTCAGACATTGTGAACTAACT 58.273 34.615 0.00 0.00 0.00 2.24
2340 2625 7.948278 AGTAACTCAGACATTGTGAACTAAC 57.052 36.000 0.00 0.00 0.00 2.34
2341 2626 7.985184 ACAAGTAACTCAGACATTGTGAACTAA 59.015 33.333 0.00 0.00 30.20 2.24
2342 2627 7.497595 ACAAGTAACTCAGACATTGTGAACTA 58.502 34.615 0.00 0.00 30.20 2.24
2343 2628 6.349300 ACAAGTAACTCAGACATTGTGAACT 58.651 36.000 0.00 0.00 30.20 3.01
2344 2629 6.604735 ACAAGTAACTCAGACATTGTGAAC 57.395 37.500 0.00 0.00 30.20 3.18
2345 2630 7.497595 AGTACAAGTAACTCAGACATTGTGAA 58.502 34.615 0.00 0.00 33.31 3.18
2346 2631 7.050970 AGTACAAGTAACTCAGACATTGTGA 57.949 36.000 0.00 0.00 33.31 3.58
2347 2632 8.812147 TTAGTACAAGTAACTCAGACATTGTG 57.188 34.615 0.00 0.00 33.31 3.33
2348 2633 9.640963 GATTAGTACAAGTAACTCAGACATTGT 57.359 33.333 0.00 0.00 35.28 2.71
2349 2634 9.088512 GGATTAGTACAAGTAACTCAGACATTG 57.911 37.037 0.00 0.00 0.00 2.82
2350 2635 9.036980 AGGATTAGTACAAGTAACTCAGACATT 57.963 33.333 0.00 0.00 0.00 2.71
2407 2712 0.544697 AACGGGAGGTCGGCATTATT 59.455 50.000 0.00 0.00 0.00 1.40
2472 2777 1.701545 TATTGCCGCCGCTTTTCTCG 61.702 55.000 0.00 0.00 35.36 4.04
2497 2805 1.699656 GACAGCAGCGCATCGATGTT 61.700 55.000 25.47 9.94 45.34 2.71
2559 2867 0.179054 GACTATTCCCCCAGAACGCC 60.179 60.000 0.00 0.00 37.29 5.68
2567 2875 1.738432 GACGACGGACTATTCCCCC 59.262 63.158 0.00 0.00 38.99 5.40
2568 2876 1.358046 CGACGACGGACTATTCCCC 59.642 63.158 0.00 0.00 38.99 4.81
2741 3049 2.270352 ATTGACAAAGGGTTCGCAGA 57.730 45.000 0.00 0.00 0.00 4.26
2750 3067 2.739913 TCGGCGAGTTTATTGACAAAGG 59.260 45.455 4.99 0.00 0.00 3.11
2756 3073 1.295792 GCCATCGGCGAGTTTATTGA 58.704 50.000 17.22 0.00 39.62 2.57
2893 3212 2.829043 TTCACATCGTCGAAGCCGGG 62.829 60.000 2.18 0.00 36.24 5.73
2898 3217 0.910513 CGCTCTTCACATCGTCGAAG 59.089 55.000 0.00 0.00 40.02 3.79
2955 3274 2.442413 GTGGTATTGGGTAAGCTGCAA 58.558 47.619 1.02 0.00 0.00 4.08
2964 3286 1.382629 GCAGTGGGTGGTATTGGGT 59.617 57.895 0.00 0.00 0.00 4.51
3195 3541 5.176958 ACTGAGAACAAGGATAAAACGAACG 59.823 40.000 0.00 0.00 0.00 3.95
3350 4856 1.535462 GCCACGAACAGCTTGTAACAT 59.465 47.619 0.00 0.00 0.00 2.71
3410 4937 8.647796 TCCTGTTTCTCTTCTTTATTCAGTGTA 58.352 33.333 0.00 0.00 0.00 2.90
3411 4938 7.509546 TCCTGTTTCTCTTCTTTATTCAGTGT 58.490 34.615 0.00 0.00 0.00 3.55
3412 4939 7.969536 TCCTGTTTCTCTTCTTTATTCAGTG 57.030 36.000 0.00 0.00 0.00 3.66
3481 5016 1.496060 ATCGGCCCTGATGAACACTA 58.504 50.000 0.00 0.00 0.00 2.74
3499 5034 4.026052 CTGGGCCCACAAAATCTTAGAAT 58.974 43.478 24.45 0.00 0.00 2.40
3501 5036 2.291540 CCTGGGCCCACAAAATCTTAGA 60.292 50.000 24.45 0.00 0.00 2.10
3504 5039 0.545071 CCCTGGGCCCACAAAATCTT 60.545 55.000 24.45 0.00 0.00 2.40
3505 5040 1.079073 CCCTGGGCCCACAAAATCT 59.921 57.895 24.45 0.00 0.00 2.40
3530 5065 1.145900 TTTGGGGCCCCTGATTCTCA 61.146 55.000 40.66 16.48 36.94 3.27
3533 5068 2.702270 ATATTTGGGGCCCCTGATTC 57.298 50.000 40.66 14.85 36.94 2.52
3547 5082 9.462174 CATTGTTGTTGTGTGACACTTATATTT 57.538 29.630 17.47 0.00 35.11 1.40
3555 5090 4.090138 TGTCATTGTTGTTGTGTGACAC 57.910 40.909 9.14 9.14 42.82 3.67
3586 5121 8.085909 GGGTGCAGTAAAGTGTTTATTTGTAAT 58.914 33.333 0.00 0.00 0.00 1.89
3605 5141 8.199449 AGATGTAAATATCAAAATTGGGTGCAG 58.801 33.333 0.00 0.00 0.00 4.41
3658 5194 8.514330 TTTTGAGCGGGATGTTATAATAAACT 57.486 30.769 0.00 0.00 0.00 2.66
3666 5202 3.384467 CCCAATTTTGAGCGGGATGTTAT 59.616 43.478 0.00 0.00 41.62 1.89
3679 5215 5.637006 TGAACTTACGATCCCCAATTTTG 57.363 39.130 0.00 0.00 0.00 2.44
3681 5217 5.505780 TCATGAACTTACGATCCCCAATTT 58.494 37.500 0.00 0.00 0.00 1.82
3682 5218 5.110814 TCATGAACTTACGATCCCCAATT 57.889 39.130 0.00 0.00 0.00 2.32
3736 5272 4.907879 TGTTTGTGCACATGTATGTCAA 57.092 36.364 22.39 6.28 39.39 3.18
3757 5296 7.749539 CAAATGTCTAACGTTTGGAGTTTTT 57.250 32.000 5.91 3.65 46.14 1.94
3769 5308 2.550978 AGGATCGGCAAATGTCTAACG 58.449 47.619 0.00 0.00 0.00 3.18
3838 5378 7.168219 TCCAGGTCATGTATCTATTTATTGCC 58.832 38.462 0.00 0.00 0.00 4.52
3839 5379 7.880195 ACTCCAGGTCATGTATCTATTTATTGC 59.120 37.037 0.00 0.00 0.00 3.56
3841 5381 9.386122 AGACTCCAGGTCATGTATCTATTTATT 57.614 33.333 0.00 0.00 46.72 1.40
3845 5385 8.811017 CAATAGACTCCAGGTCATGTATCTATT 58.189 37.037 8.31 8.31 46.72 1.73
3856 5396 9.267084 GAGAATTATTTCAATAGACTCCAGGTC 57.733 37.037 0.56 0.00 38.48 3.85
3858 5398 8.144478 TCGAGAATTATTTCAATAGACTCCAGG 58.856 37.037 0.56 0.00 34.08 4.45
3859 5399 9.703892 ATCGAGAATTATTTCAATAGACTCCAG 57.296 33.333 0.00 0.00 34.08 3.86
3861 5401 8.439286 GCATCGAGAATTATTTCAATAGACTCC 58.561 37.037 0.00 0.00 34.08 3.85
3868 5408 9.806203 TGAATTTGCATCGAGAATTATTTCAAT 57.194 25.926 0.00 0.00 34.08 2.57
3871 5411 8.847444 AGTGAATTTGCATCGAGAATTATTTC 57.153 30.769 0.00 0.00 0.00 2.17
3895 5435 4.655762 TGAGGTCCGACTCAATCATAAG 57.344 45.455 0.00 0.00 44.03 1.73
3905 5445 1.534729 GGCAAAATTGAGGTCCGACT 58.465 50.000 0.00 0.00 0.00 4.18
3909 5449 1.691434 TGTTGGGCAAAATTGAGGTCC 59.309 47.619 0.00 0.00 0.00 4.46
3913 5453 4.696455 AGAAACTGTTGGGCAAAATTGAG 58.304 39.130 0.00 0.00 0.00 3.02
3923 5463 2.293399 GCACCTACAAGAAACTGTTGGG 59.707 50.000 8.66 2.66 43.84 4.12
3948 5488 5.566627 GCACTGTTAAATGGTTTGGCAGTAT 60.567 40.000 10.83 0.00 37.07 2.12
3951 5491 3.059166 GCACTGTTAAATGGTTTGGCAG 58.941 45.455 0.00 0.00 34.31 4.85
3964 5504 3.855858 TGATGCGTATCTTGCACTGTTA 58.144 40.909 14.76 0.00 46.57 2.41
3965 5505 2.698803 TGATGCGTATCTTGCACTGTT 58.301 42.857 14.76 0.00 46.57 3.16
3966 5506 2.385013 TGATGCGTATCTTGCACTGT 57.615 45.000 14.76 0.00 46.57 3.55
3967 5507 6.898912 ATATATGATGCGTATCTTGCACTG 57.101 37.500 14.76 0.00 46.57 3.66
3968 5508 7.912056 AAATATATGATGCGTATCTTGCACT 57.088 32.000 14.76 0.00 46.57 4.40
3979 5519 7.075674 TGCCTTCACATAAATATATGATGCG 57.924 36.000 3.03 0.59 41.25 4.73
4016 5556 5.418840 CCCCAATCCTTATATGTATGTTGCC 59.581 44.000 0.00 0.00 0.00 4.52
4030 5570 8.836735 CATACTATTACCTATTCCCCAATCCTT 58.163 37.037 0.00 0.00 0.00 3.36
4055 5595 6.154363 TGCGATTGGTATGAGGTATATCATCA 59.846 38.462 0.00 0.00 40.40 3.07
4083 5623 0.530744 AGCGTCTAATCACGGAAGCA 59.469 50.000 0.00 0.00 40.29 3.91
4090 5630 1.321743 CGTTGCTGAGCGTCTAATCAC 59.678 52.381 0.00 0.00 0.00 3.06
4099 5639 3.782244 GTGCCTCGTTGCTGAGCG 61.782 66.667 0.00 0.00 34.56 5.03
4101 5641 1.005748 TGAGTGCCTCGTTGCTGAG 60.006 57.895 1.05 0.00 32.35 3.35
4109 5649 1.537638 ACTATATCGCTGAGTGCCTCG 59.462 52.381 0.00 0.00 38.78 4.63
4120 5660 2.662700 CAGACGGGAACACTATATCGC 58.337 52.381 0.00 0.00 0.00 4.58
4125 5665 1.139058 GATGGCAGACGGGAACACTAT 59.861 52.381 0.00 0.00 0.00 2.12
4128 5668 1.745489 GGATGGCAGACGGGAACAC 60.745 63.158 0.00 0.00 0.00 3.32
4129 5669 2.220586 TGGATGGCAGACGGGAACA 61.221 57.895 0.00 0.00 0.00 3.18
4130 5670 1.745489 GTGGATGGCAGACGGGAAC 60.745 63.158 0.00 0.00 0.00 3.62
4131 5671 1.561769 ATGTGGATGGCAGACGGGAA 61.562 55.000 0.00 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.