Multiple sequence alignment - TraesCS6A01G310800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G310800 chr6A 100.000 6013 0 0 1 6013 546935268 546929256 0.000000e+00 11105.0
1 TraesCS6A01G310800 chr6A 80.233 258 47 4 566 819 608292439 608292182 2.210000e-44 191.0
2 TraesCS6A01G310800 chr6B 93.375 2249 123 12 822 3068 599770775 599768551 0.000000e+00 3304.0
3 TraesCS6A01G310800 chr6B 90.548 1259 75 17 3899 5138 599768550 599767317 0.000000e+00 1626.0
4 TraesCS6A01G310800 chr6B 96.816 848 16 2 3065 3902 225321050 225321896 0.000000e+00 1406.0
5 TraesCS6A01G310800 chr6B 94.814 752 24 4 5263 6013 599759227 599758490 0.000000e+00 1158.0
6 TraesCS6A01G310800 chr6B 83.721 430 51 15 1 426 599771700 599771286 7.310000e-104 388.0
7 TraesCS6A01G310800 chr6B 100.000 35 0 0 1207 1241 98407537 98407571 1.400000e-06 65.8
8 TraesCS6A01G310800 chr6B 100.000 35 0 0 1207 1241 98450747 98450781 1.400000e-06 65.8
9 TraesCS6A01G310800 chr6B 100.000 35 0 0 1207 1241 98518190 98518224 1.400000e-06 65.8
10 TraesCS6A01G310800 chr6B 100.000 35 0 0 1207 1241 98677578 98677612 1.400000e-06 65.8
11 TraesCS6A01G310800 chr6B 82.432 74 11 2 1169 1241 98689691 98689763 5.030000e-06 63.9
12 TraesCS6A01G310800 chr6D 92.786 1511 76 11 948 2456 400709565 400708086 0.000000e+00 2156.0
13 TraesCS6A01G310800 chr6D 95.816 717 13 5 5303 6013 400702435 400701730 0.000000e+00 1142.0
14 TraesCS6A01G310800 chr6D 93.475 613 38 2 4457 5068 400706808 400706197 0.000000e+00 909.0
15 TraesCS6A01G310800 chr6D 93.640 566 31 3 2506 3068 400707826 400707263 0.000000e+00 841.0
16 TraesCS6A01G310800 chr6D 92.222 180 13 1 4294 4472 400707044 400706865 2.780000e-63 254.0
17 TraesCS6A01G310800 chr6D 82.400 250 30 12 577 819 31814247 31814005 7.900000e-49 206.0
18 TraesCS6A01G310800 chr5B 99.045 838 8 0 3065 3902 339088242 339089079 0.000000e+00 1504.0
19 TraesCS6A01G310800 chr5B 100.000 165 0 0 4131 4295 687987888 687987724 7.570000e-79 305.0
20 TraesCS6A01G310800 chr2B 99.045 838 8 0 3065 3902 165281222 165282059 0.000000e+00 1504.0
21 TraesCS6A01G310800 chr1A 98.811 841 10 0 3065 3905 582536404 582535564 0.000000e+00 1498.0
22 TraesCS6A01G310800 chr1A 93.956 182 9 2 4130 4311 493208149 493207970 2.140000e-69 274.0
23 TraesCS6A01G310800 chr1A 84.874 238 29 7 592 825 321905703 321905469 3.620000e-57 233.0
24 TraesCS6A01G310800 chr1A 80.357 112 16 5 5651 5759 497240925 497241033 5.000000e-11 80.5
25 TraesCS6A01G310800 chr1A 88.525 61 5 2 5690 5749 492801143 492801084 8.360000e-09 73.1
26 TraesCS6A01G310800 chr3A 98.810 840 10 0 3065 3904 57270997 57270158 0.000000e+00 1496.0
27 TraesCS6A01G310800 chr3A 84.674 261 31 9 566 819 61977257 61977515 1.000000e-62 252.0
28 TraesCS6A01G310800 chr7B 98.580 845 12 0 3065 3909 476790671 476789827 0.000000e+00 1495.0
29 TraesCS6A01G310800 chr7B 85.714 259 29 8 565 819 537460604 537460350 3.570000e-67 267.0
30 TraesCS6A01G310800 chr7A 96.740 859 7 6 3065 3902 652475830 652474972 0.000000e+00 1411.0
31 TraesCS6A01G310800 chr7A 96.244 852 18 4 3065 3903 299422193 299423043 0.000000e+00 1384.0
32 TraesCS6A01G310800 chr7A 84.898 245 29 7 579 819 59013393 59013633 2.170000e-59 241.0
33 TraesCS6A01G310800 chr7A 96.875 32 0 1 3946 3976 422642065 422642096 1.100000e-02 52.8
34 TraesCS6A01G310800 chr5A 97.020 839 4 1 3065 3903 637095791 637094974 0.000000e+00 1391.0
35 TraesCS6A01G310800 chr4A 96.539 838 8 1 3065 3902 162139062 162139878 0.000000e+00 1367.0
36 TraesCS6A01G310800 chr4A 96.420 838 9 1 3065 3902 162142961 162143777 0.000000e+00 1362.0
37 TraesCS6A01G310800 chr4A 96.301 838 10 1 3065 3902 162147311 162148127 0.000000e+00 1356.0
38 TraesCS6A01G310800 chr4A 94.944 178 8 1 4120 4297 92731998 92731822 1.650000e-70 278.0
39 TraesCS6A01G310800 chr5D 87.500 248 26 4 579 822 9905127 9904881 1.280000e-71 281.0
40 TraesCS6A01G310800 chr5D 84.959 246 31 6 579 819 442857835 442858079 1.670000e-60 244.0
41 TraesCS6A01G310800 chr2D 96.491 171 5 1 4130 4300 593801761 593801592 1.280000e-71 281.0
42 TraesCS6A01G310800 chr2D 94.475 181 9 1 4120 4300 176904096 176904275 1.650000e-70 278.0
43 TraesCS6A01G310800 chr2D 94.444 180 9 1 4116 4295 609886777 609886955 5.940000e-70 276.0
44 TraesCS6A01G310800 chr2D 85.057 261 32 6 565 819 622498146 622498405 5.980000e-65 259.0
45 TraesCS6A01G310800 chr4D 95.455 176 6 2 4131 4305 93336684 93336858 4.590000e-71 279.0
46 TraesCS6A01G310800 chr4D 82.824 262 39 6 566 822 435601151 435600891 4.690000e-56 230.0
47 TraesCS6A01G310800 chr4D 100.000 29 0 0 3946 3974 446136488 446136460 3.000000e-03 54.7
48 TraesCS6A01G310800 chr1B 95.429 175 8 0 4121 4295 564906394 564906568 4.590000e-71 279.0
49 TraesCS6A01G310800 chr1B 90.741 54 3 2 5697 5749 530052994 530052942 3.010000e-08 71.3
50 TraesCS6A01G310800 chr1D 85.441 261 30 8 565 819 398495210 398495468 1.290000e-66 265.0
51 TraesCS6A01G310800 chr1D 82.731 249 38 4 573 819 443094168 443093923 3.650000e-52 217.0
52 TraesCS6A01G310800 chr1D 80.247 243 43 5 580 819 413228343 413228583 1.720000e-40 178.0
53 TraesCS6A01G310800 chr1D 79.297 256 49 4 568 819 402130889 402131144 6.190000e-40 176.0
54 TraesCS6A01G310800 chr1D 80.531 226 30 11 606 819 111838952 111838729 1.730000e-35 161.0
55 TraesCS6A01G310800 chr1D 78.378 259 48 6 566 819 470923892 470923637 1.730000e-35 161.0
56 TraesCS6A01G310800 chr3D 83.846 260 35 7 566 819 170678834 170679092 2.170000e-59 241.0
57 TraesCS6A01G310800 chr3D 83.846 260 35 7 566 819 250765428 250765686 2.170000e-59 241.0
58 TraesCS6A01G310800 chr7D 81.008 258 45 3 565 819 84805120 84805376 1.020000e-47 202.0
59 TraesCS6A01G310800 chrUn 79.079 239 38 8 579 814 36490640 36490411 2.900000e-33 154.0
60 TraesCS6A01G310800 chrUn 100.000 35 0 0 1207 1241 21368881 21368847 1.400000e-06 65.8
61 TraesCS6A01G310800 chr4B 87.755 49 5 1 3938 3985 40834816 40834864 8.420000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G310800 chr6A 546929256 546935268 6012 True 11105.000000 11105 100.000000 1 6013 1 chr6A.!!$R1 6012
1 TraesCS6A01G310800 chr6B 599767317 599771700 4383 True 1772.666667 3304 89.214667 1 5138 3 chr6B.!!$R2 5137
2 TraesCS6A01G310800 chr6B 225321050 225321896 846 False 1406.000000 1406 96.816000 3065 3902 1 chr6B.!!$F6 837
3 TraesCS6A01G310800 chr6B 599758490 599759227 737 True 1158.000000 1158 94.814000 5263 6013 1 chr6B.!!$R1 750
4 TraesCS6A01G310800 chr6D 400701730 400709565 7835 True 1060.400000 2156 93.587800 948 6013 5 chr6D.!!$R2 5065
5 TraesCS6A01G310800 chr5B 339088242 339089079 837 False 1504.000000 1504 99.045000 3065 3902 1 chr5B.!!$F1 837
6 TraesCS6A01G310800 chr2B 165281222 165282059 837 False 1504.000000 1504 99.045000 3065 3902 1 chr2B.!!$F1 837
7 TraesCS6A01G310800 chr1A 582535564 582536404 840 True 1498.000000 1498 98.811000 3065 3905 1 chr1A.!!$R4 840
8 TraesCS6A01G310800 chr3A 57270158 57270997 839 True 1496.000000 1496 98.810000 3065 3904 1 chr3A.!!$R1 839
9 TraesCS6A01G310800 chr7B 476789827 476790671 844 True 1495.000000 1495 98.580000 3065 3909 1 chr7B.!!$R1 844
10 TraesCS6A01G310800 chr7A 652474972 652475830 858 True 1411.000000 1411 96.740000 3065 3902 1 chr7A.!!$R1 837
11 TraesCS6A01G310800 chr7A 299422193 299423043 850 False 1384.000000 1384 96.244000 3065 3903 1 chr7A.!!$F2 838
12 TraesCS6A01G310800 chr5A 637094974 637095791 817 True 1391.000000 1391 97.020000 3065 3903 1 chr5A.!!$R1 838
13 TraesCS6A01G310800 chr4A 162139062 162148127 9065 False 1361.666667 1367 96.420000 3065 3902 3 chr4A.!!$F1 837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 582 0.179108 AAGCCTCTTCGCATCCGTAC 60.179 55.000 0.00 0.00 35.54 3.67 F
563 674 0.316278 CGCTCTATCGGTCACGTGAG 60.316 60.000 20.73 8.64 41.85 3.51 F
870 1107 0.395311 TCTGTCTGGCTAGGGTACGG 60.395 60.000 0.00 0.00 0.00 4.02 F
2241 2479 0.680618 TGGAAATGGCAAGGCAACAG 59.319 50.000 0.00 0.00 41.41 3.16 F
2457 2695 1.066303 ACCGCTCTCGATGATTCAGTC 59.934 52.381 0.00 0.00 38.10 3.51 F
2475 2713 1.067776 GTCCGGAGTACAGTTCCTGTG 60.068 57.143 3.06 0.00 45.01 3.66 F
4329 13058 1.228124 TGGCACTAACACCACCAGC 60.228 57.895 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 2016 0.036858 GGCGAGGTCTTCAAGCTTCT 60.037 55.000 0.00 0.00 35.33 2.85 R
2063 2301 0.108207 GATCATGGTGGCCTGAGAGG 59.892 60.000 3.32 0.00 38.80 3.69 R
2268 2506 0.530744 CCTTGTAGGCGCTGTACTGA 59.469 55.000 7.64 2.69 0.00 3.41 R
3055 3507 2.783135 TGCTCTCCAAAAGGTCACATC 58.217 47.619 0.00 0.00 0.00 3.06 R
4329 13058 2.551912 GCCACGGGTGTTTGGACTG 61.552 63.158 0.00 0.00 34.46 3.51 R
4384 13113 3.642848 AGTGGCAATTTGGATGAGTTTGT 59.357 39.130 0.00 0.00 0.00 2.83 R
5140 13971 0.168128 GCCAACATCGCCAACAGTAC 59.832 55.000 0.00 0.00 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.030228 CAGATTTAAATCAAAGACTTCCGCC 58.970 40.000 26.02 0.00 37.89 6.13
29 30 4.776795 TTTAAATCAAAGACTTCCGCCC 57.223 40.909 0.00 0.00 0.00 6.13
32 33 2.990066 ATCAAAGACTTCCGCCCTAG 57.010 50.000 0.00 0.00 0.00 3.02
48 49 0.733150 CTAGCGGGTTTTGCTAAGCC 59.267 55.000 5.23 5.23 43.82 4.35
59 60 1.086696 TGCTAAGCCTGAATTGTCGC 58.913 50.000 0.00 0.00 0.00 5.19
80 81 6.528423 GTCGCGTATTCATGCTTAGATATCTT 59.472 38.462 11.25 0.00 34.29 2.40
126 127 4.021102 AGCGGTATTGCCAGCTAATAAT 57.979 40.909 7.99 0.00 42.33 1.28
127 128 4.398319 AGCGGTATTGCCAGCTAATAATT 58.602 39.130 7.99 0.00 42.33 1.40
128 129 4.216257 AGCGGTATTGCCAGCTAATAATTG 59.784 41.667 7.99 0.00 42.33 2.32
169 170 1.745653 TGACTCGATCGCAGTGAAGAT 59.254 47.619 20.05 0.00 0.00 2.40
181 182 3.485633 CAGTGAAGATGCATGACAAACG 58.514 45.455 2.46 0.00 0.00 3.60
216 217 4.569966 CCTCATTCATCCTTGTCTTCTTCG 59.430 45.833 0.00 0.00 0.00 3.79
229 230 2.171840 CTTCTTCGTCCCTCTTCCTCA 58.828 52.381 0.00 0.00 0.00 3.86
231 232 2.103373 TCTTCGTCCCTCTTCCTCATG 58.897 52.381 0.00 0.00 0.00 3.07
233 234 1.769026 TCGTCCCTCTTCCTCATGAG 58.231 55.000 16.24 16.24 0.00 2.90
238 239 3.454082 GTCCCTCTTCCTCATGAGTGAAT 59.546 47.826 21.11 0.00 33.05 2.57
239 240 3.708631 TCCCTCTTCCTCATGAGTGAATC 59.291 47.826 21.11 0.00 33.05 2.52
240 241 3.710677 CCCTCTTCCTCATGAGTGAATCT 59.289 47.826 21.11 0.00 33.05 2.40
241 242 4.163839 CCCTCTTCCTCATGAGTGAATCTT 59.836 45.833 21.11 0.00 33.05 2.40
242 243 5.339035 CCCTCTTCCTCATGAGTGAATCTTT 60.339 44.000 21.11 0.00 33.05 2.52
243 244 6.126940 CCCTCTTCCTCATGAGTGAATCTTTA 60.127 42.308 21.11 2.30 33.05 1.85
244 245 7.334090 CCTCTTCCTCATGAGTGAATCTTTAA 58.666 38.462 21.11 1.68 33.05 1.52
245 246 7.992033 CCTCTTCCTCATGAGTGAATCTTTAAT 59.008 37.037 21.11 0.00 33.05 1.40
246 247 8.728337 TCTTCCTCATGAGTGAATCTTTAATG 57.272 34.615 21.11 9.54 33.05 1.90
247 248 8.542926 TCTTCCTCATGAGTGAATCTTTAATGA 58.457 33.333 21.11 11.28 33.05 2.57
248 249 9.170734 CTTCCTCATGAGTGAATCTTTAATGAA 57.829 33.333 21.11 10.98 33.05 2.57
249 250 8.728337 TCCTCATGAGTGAATCTTTAATGAAG 57.272 34.615 21.11 0.09 33.05 3.02
250 251 7.772292 TCCTCATGAGTGAATCTTTAATGAAGG 59.228 37.037 21.11 0.50 33.28 3.46
251 252 7.555554 CCTCATGAGTGAATCTTTAATGAAGGT 59.444 37.037 21.11 0.00 33.28 3.50
252 253 8.868522 TCATGAGTGAATCTTTAATGAAGGTT 57.131 30.769 0.00 0.00 41.38 3.50
274 275 9.905713 AGGTTCTTTATTTATTCATGCTACTCA 57.094 29.630 0.00 0.00 0.00 3.41
287 288 7.953158 TCATGCTACTCATAATTTACTCAGC 57.047 36.000 0.00 0.00 33.19 4.26
288 289 6.642540 TCATGCTACTCATAATTTACTCAGCG 59.357 38.462 0.00 0.00 33.19 5.18
289 290 6.144078 TGCTACTCATAATTTACTCAGCGA 57.856 37.500 0.00 0.00 0.00 4.93
290 291 6.569780 TGCTACTCATAATTTACTCAGCGAA 58.430 36.000 0.00 0.00 0.00 4.70
300 301 2.806608 ACTCAGCGAACCTTTAACGA 57.193 45.000 0.00 0.00 0.00 3.85
321 322 5.992217 ACGAGGGTTCTCTATTTATTCATGC 59.008 40.000 0.00 0.00 37.86 4.06
347 349 9.331282 CTACTCATAATTTCCTTAAGTTCCTGG 57.669 37.037 0.97 0.00 0.00 4.45
348 350 6.603599 ACTCATAATTTCCTTAAGTTCCTGGC 59.396 38.462 0.97 0.00 0.00 4.85
349 351 6.731467 TCATAATTTCCTTAAGTTCCTGGCT 58.269 36.000 0.97 0.00 0.00 4.75
350 352 7.867921 TCATAATTTCCTTAAGTTCCTGGCTA 58.132 34.615 0.97 0.00 0.00 3.93
351 353 7.993183 TCATAATTTCCTTAAGTTCCTGGCTAG 59.007 37.037 0.97 0.00 0.00 3.42
352 354 5.780958 ATTTCCTTAAGTTCCTGGCTAGT 57.219 39.130 0.97 0.00 0.00 2.57
353 355 4.820894 TTCCTTAAGTTCCTGGCTAGTC 57.179 45.455 0.97 0.00 0.00 2.59
355 357 4.024670 TCCTTAAGTTCCTGGCTAGTCTC 58.975 47.826 0.97 0.00 0.00 3.36
383 426 4.646492 AGTTTGTTGAACTTCCAGCTGAAT 59.354 37.500 17.39 0.00 46.34 2.57
391 434 4.405116 ACTTCCAGCTGAATCTGATCTC 57.595 45.455 17.39 0.00 36.19 2.75
393 436 4.141892 ACTTCCAGCTGAATCTGATCTCTG 60.142 45.833 17.39 0.00 36.19 3.35
394 437 2.102757 TCCAGCTGAATCTGATCTCTGC 59.897 50.000 17.39 16.29 36.19 4.26
448 559 0.895559 GGCTTTGGTGAAGTCAGGGG 60.896 60.000 0.00 0.00 39.81 4.79
461 572 0.251341 TCAGGGGCAAAAGCCTCTTC 60.251 55.000 6.07 0.00 38.92 2.87
465 576 1.598701 GGGCAAAAGCCTCTTCGCAT 61.599 55.000 6.45 0.00 0.00 4.73
471 582 0.179108 AAGCCTCTTCGCATCCGTAC 60.179 55.000 0.00 0.00 35.54 3.67
472 583 1.038130 AGCCTCTTCGCATCCGTACT 61.038 55.000 0.00 0.00 35.54 2.73
474 585 1.560923 CCTCTTCGCATCCGTACTTG 58.439 55.000 0.00 0.00 35.54 3.16
477 588 0.460284 CTTCGCATCCGTACTTGGCT 60.460 55.000 0.00 0.00 35.54 4.75
483 594 2.755650 CATCCGTACTTGGCTATGGTC 58.244 52.381 0.00 0.00 0.00 4.02
484 595 2.154567 TCCGTACTTGGCTATGGTCT 57.845 50.000 0.00 0.00 0.00 3.85
488 599 3.004524 CCGTACTTGGCTATGGTCTAGTC 59.995 52.174 0.37 0.00 35.13 2.59
500 611 3.042682 TGGTCTAGTCTTCCCACACAAA 58.957 45.455 0.00 0.00 0.00 2.83
508 619 5.720202 AGTCTTCCCACACAAAAAGAAAAC 58.280 37.500 0.00 0.00 30.10 2.43
512 623 5.667539 TCCCACACAAAAAGAAAACATGA 57.332 34.783 0.00 0.00 0.00 3.07
513 624 6.042638 TCCCACACAAAAAGAAAACATGAA 57.957 33.333 0.00 0.00 0.00 2.57
540 651 7.416154 TTTCGTCCAGTAGTGTTATGAAAAG 57.584 36.000 12.02 0.00 0.00 2.27
550 661 5.790593 AGTGTTATGAAAAGAACCGCTCTA 58.209 37.500 0.00 0.00 32.46 2.43
563 674 0.316278 CGCTCTATCGGTCACGTGAG 60.316 60.000 20.73 8.64 41.85 3.51
567 678 3.364167 GCTCTATCGGTCACGTGAGATAC 60.364 52.174 20.73 7.60 41.85 2.24
568 679 4.059511 CTCTATCGGTCACGTGAGATACT 58.940 47.826 20.73 5.68 41.85 2.12
569 680 4.056740 TCTATCGGTCACGTGAGATACTC 58.943 47.826 20.73 5.71 41.85 2.59
570 681 2.103537 TCGGTCACGTGAGATACTCA 57.896 50.000 20.73 0.00 41.85 3.41
778 1015 9.921637 TTTCTCAAATTTTGTGTAGTTTGACTT 57.078 25.926 8.89 0.00 36.11 3.01
779 1016 9.567848 TTCTCAAATTTTGTGTAGTTTGACTTC 57.432 29.630 8.89 0.00 36.11 3.01
780 1017 8.735315 TCTCAAATTTTGTGTAGTTTGACTTCA 58.265 29.630 8.89 0.00 36.11 3.02
781 1018 9.352784 CTCAAATTTTGTGTAGTTTGACTTCAA 57.647 29.630 8.89 0.00 36.11 2.69
782 1019 9.698309 TCAAATTTTGTGTAGTTTGACTTCAAA 57.302 25.926 8.89 0.07 42.90 2.69
813 1050 9.504708 TTTTATATGTGGAGTAAAAGAAACGGA 57.495 29.630 0.00 0.00 0.00 4.69
814 1051 8.712285 TTATATGTGGAGTAAAAGAAACGGAG 57.288 34.615 0.00 0.00 0.00 4.63
815 1052 3.735591 TGTGGAGTAAAAGAAACGGAGG 58.264 45.455 0.00 0.00 0.00 4.30
816 1053 3.072211 GTGGAGTAAAAGAAACGGAGGG 58.928 50.000 0.00 0.00 0.00 4.30
817 1054 2.974099 TGGAGTAAAAGAAACGGAGGGA 59.026 45.455 0.00 0.00 0.00 4.20
818 1055 3.007614 TGGAGTAAAAGAAACGGAGGGAG 59.992 47.826 0.00 0.00 0.00 4.30
819 1056 3.260128 GGAGTAAAAGAAACGGAGGGAGA 59.740 47.826 0.00 0.00 0.00 3.71
820 1057 4.262765 GGAGTAAAAGAAACGGAGGGAGAA 60.263 45.833 0.00 0.00 0.00 2.87
826 1063 2.840651 AGAAACGGAGGGAGAATGTGAT 59.159 45.455 0.00 0.00 0.00 3.06
827 1064 4.030913 AGAAACGGAGGGAGAATGTGATA 58.969 43.478 0.00 0.00 0.00 2.15
832 1069 4.202367 ACGGAGGGAGAATGTGATAAATCC 60.202 45.833 0.00 0.00 0.00 3.01
840 1077 6.239120 GGAGAATGTGATAAATCCACCCAATG 60.239 42.308 0.00 0.00 33.80 2.82
870 1107 0.395311 TCTGTCTGGCTAGGGTACGG 60.395 60.000 0.00 0.00 0.00 4.02
898 1135 3.193395 TCCATTACCACAGTCCACCTA 57.807 47.619 0.00 0.00 0.00 3.08
990 1228 2.507322 GAATCACAGCGCCGCGAAAA 62.507 55.000 18.91 0.00 0.00 2.29
992 1230 1.922135 ATCACAGCGCCGCGAAAATT 61.922 50.000 18.91 0.00 0.00 1.82
994 1232 2.576847 CAGCGCCGCGAAAATTCC 60.577 61.111 18.91 0.00 0.00 3.01
1014 1252 1.675641 GGCCATGGTTCTCAAGCGT 60.676 57.895 14.67 0.00 31.71 5.07
1323 1561 2.223803 AGGAGAAGAAGAAGGCGAGA 57.776 50.000 0.00 0.00 0.00 4.04
1325 1563 2.900546 AGGAGAAGAAGAAGGCGAGAAA 59.099 45.455 0.00 0.00 0.00 2.52
1530 1768 1.587054 CAACGCCGACCTTCTCTCT 59.413 57.895 0.00 0.00 0.00 3.10
1611 1849 1.228124 CACCAAGACGGCCCTCAAA 60.228 57.895 0.00 0.00 39.03 2.69
1693 1931 1.522580 GCCTCTCGGATGGAGCAAC 60.523 63.158 1.96 0.00 42.82 4.17
1743 1981 1.377725 CCTCTCCTGCAACGCCATT 60.378 57.895 0.00 0.00 0.00 3.16
1746 1984 0.955428 TCTCCTGCAACGCCATTGAC 60.955 55.000 0.00 0.00 41.23 3.18
1766 2004 0.961857 AGCATCCACGCATTGCTGAA 60.962 50.000 7.12 0.00 44.63 3.02
1787 2025 4.722700 GCCCCGGCAGAAGCTTGA 62.723 66.667 2.10 0.00 41.70 3.02
1790 2028 1.003355 CCCGGCAGAAGCTTGAAGA 60.003 57.895 2.10 0.00 41.70 2.87
1861 2099 1.136446 CGCCGTTCGTTCCTACAAAAG 60.136 52.381 0.00 0.00 0.00 2.27
2103 2341 1.510480 GCTCACGCAGCCTTGTTCTT 61.510 55.000 0.00 0.00 43.17 2.52
2130 2368 4.394712 CGCTCCCTTCGTGGCCTT 62.395 66.667 3.32 0.00 0.00 4.35
2211 2449 3.056250 TGCTCTTCACAGAGGTCAATCTC 60.056 47.826 1.53 0.00 46.24 2.75
2227 2465 1.371467 TCTCTGGGGAGCAATGGAAA 58.629 50.000 0.00 0.00 39.31 3.13
2241 2479 0.680618 TGGAAATGGCAAGGCAACAG 59.319 50.000 0.00 0.00 41.41 3.16
2250 2488 1.152756 AAGGCAACAGGGACACACC 60.153 57.895 0.00 0.00 41.41 4.16
2268 2506 2.233922 CACCGAGGGAACTATGTTGAGT 59.766 50.000 0.00 0.00 44.43 3.41
2330 2568 1.503542 CAGAACCTGATGCCGTTGC 59.496 57.895 0.00 0.00 32.44 4.17
2347 2585 4.539870 CGTTGCAGAGTTTTTCATGTCAT 58.460 39.130 0.00 0.00 0.00 3.06
2372 2610 1.070604 CCCATGATGCCTCTACCCAT 58.929 55.000 0.00 0.00 0.00 4.00
2391 2629 4.005487 CATGGAGGATGGAGAGACATTC 57.995 50.000 0.00 0.00 0.00 2.67
2392 2630 2.034878 TGGAGGATGGAGAGACATTCG 58.965 52.381 0.00 0.00 31.41 3.34
2393 2631 2.035632 GGAGGATGGAGAGACATTCGT 58.964 52.381 0.00 0.00 31.41 3.85
2406 2644 5.070981 AGAGACATTCGTATTGGATGTGGAT 59.929 40.000 0.00 0.00 0.00 3.41
2437 2675 3.677148 GCAGCTGCTGTCTGAATACTGTA 60.677 47.826 31.33 0.00 38.21 2.74
2439 2677 3.118956 AGCTGCTGTCTGAATACTGTACC 60.119 47.826 0.00 0.00 0.00 3.34
2440 2678 3.439293 CTGCTGTCTGAATACTGTACCG 58.561 50.000 0.00 0.00 0.00 4.02
2444 2682 3.353557 TGTCTGAATACTGTACCGCTCT 58.646 45.455 0.00 0.00 0.00 4.09
2446 2684 2.612672 TCTGAATACTGTACCGCTCTCG 59.387 50.000 0.00 0.00 0.00 4.04
2447 2685 2.612672 CTGAATACTGTACCGCTCTCGA 59.387 50.000 0.00 0.00 38.10 4.04
2456 2694 1.107114 ACCGCTCTCGATGATTCAGT 58.893 50.000 0.00 0.00 38.10 3.41
2457 2695 1.066303 ACCGCTCTCGATGATTCAGTC 59.934 52.381 0.00 0.00 38.10 3.51
2459 2697 1.764851 GCTCTCGATGATTCAGTCCG 58.235 55.000 0.00 0.00 0.00 4.79
2460 2698 1.601663 GCTCTCGATGATTCAGTCCGG 60.602 57.143 0.00 0.00 0.00 5.14
2461 2699 1.950216 CTCTCGATGATTCAGTCCGGA 59.050 52.381 0.00 0.00 0.00 5.14
2462 2700 1.950216 TCTCGATGATTCAGTCCGGAG 59.050 52.381 3.06 0.00 0.00 4.63
2463 2701 1.678627 CTCGATGATTCAGTCCGGAGT 59.321 52.381 3.06 4.57 0.00 3.85
2475 2713 1.067776 GTCCGGAGTACAGTTCCTGTG 60.068 57.143 3.06 0.00 45.01 3.66
2580 3031 2.419673 TGCCATGCTGAAGAAATACACG 59.580 45.455 0.00 0.00 0.00 4.49
2764 3216 1.931635 TTGTTTGGGGCCTCCATTAC 58.068 50.000 13.07 13.71 46.52 1.89
2818 3270 4.694509 ACTCAGCATTCTCACATCAACTTC 59.305 41.667 0.00 0.00 0.00 3.01
2866 3318 5.014858 TCTTCTGACACGGTTCCTATACTT 58.985 41.667 0.00 0.00 0.00 2.24
2902 3354 2.947652 CTCCAATGATGAAGATGCCGTT 59.052 45.455 0.00 0.00 0.00 4.44
2908 3360 3.200483 TGATGAAGATGCCGTTGATGAG 58.800 45.455 0.00 0.00 0.00 2.90
2929 3381 1.599518 GTCATGTTGGCCGGTCACA 60.600 57.895 9.15 11.39 0.00 3.58
2977 3429 7.210174 TCTCTCCATTTGAATAATCTACACCG 58.790 38.462 0.00 0.00 0.00 4.94
2995 3447 5.698832 ACACCGTATGTTCATCAAAACATG 58.301 37.500 11.46 0.00 46.56 3.21
3048 3500 4.836125 TCCTTTTGACAATGTCTTCTGC 57.164 40.909 14.97 0.00 33.15 4.26
3055 3507 4.318332 TGACAATGTCTTCTGCTAACCAG 58.682 43.478 14.97 0.00 36.87 4.00
3629 8001 2.271493 GAGGAGGGGGAGGGGAATGA 62.271 65.000 0.00 0.00 0.00 2.57
3887 12609 4.218417 GTGATGCCTGAATTGTGGTACTTT 59.782 41.667 0.00 0.00 0.00 2.66
4051 12777 6.698380 TGACCTGGATAGAACTTCTGTTAAC 58.302 40.000 0.00 0.00 36.39 2.01
4052 12778 6.269077 TGACCTGGATAGAACTTCTGTTAACA 59.731 38.462 8.28 8.28 36.39 2.41
4064 12792 7.510549 ACTTCTGTTAACACTTTATGCACAT 57.489 32.000 3.59 0.00 0.00 3.21
4069 12797 9.448438 TCTGTTAACACTTTATGCACATCTATT 57.552 29.630 3.59 0.00 0.00 1.73
4136 12865 9.930693 CCATAAAAATACTACTGATCTACTCCC 57.069 37.037 0.00 0.00 0.00 4.30
4145 12874 2.962421 CTGATCTACTCCCTCTGTTCCC 59.038 54.545 0.00 0.00 0.00 3.97
4151 12880 5.538877 TCTACTCCCTCTGTTCCCAAATAT 58.461 41.667 0.00 0.00 0.00 1.28
4160 12889 7.283354 CCCTCTGTTCCCAAATATAAGTCTTTC 59.717 40.741 0.00 0.00 0.00 2.62
4161 12890 8.049721 CCTCTGTTCCCAAATATAAGTCTTTCT 58.950 37.037 0.00 0.00 0.00 2.52
4177 12906 7.309770 AGTCTTTCTAGAGATTCCAACAAGT 57.690 36.000 0.00 0.00 0.00 3.16
4178 12907 7.158021 AGTCTTTCTAGAGATTCCAACAAGTG 58.842 38.462 0.00 0.00 0.00 3.16
4179 12908 7.015682 AGTCTTTCTAGAGATTCCAACAAGTGA 59.984 37.037 0.00 0.00 0.00 3.41
4181 12910 6.672266 TTCTAGAGATTCCAACAAGTGACT 57.328 37.500 0.00 0.00 0.00 3.41
4191 12920 5.845103 TCCAACAAGTGACTACATACGAAA 58.155 37.500 0.00 0.00 0.00 3.46
4206 12935 9.478019 CTACATACGAAACAAAATGAGTGAATC 57.522 33.333 0.00 0.00 0.00 2.52
4209 12938 9.478019 CATACGAAACAAAATGAGTGAATCTAC 57.522 33.333 0.00 0.00 0.00 2.59
4249 12978 2.927553 ACGTCCGTATGTTGTAGTCC 57.072 50.000 0.00 0.00 0.00 3.85
4250 12979 2.161855 ACGTCCGTATGTTGTAGTCCA 58.838 47.619 0.00 0.00 0.00 4.02
4251 12980 2.756760 ACGTCCGTATGTTGTAGTCCAT 59.243 45.455 0.00 0.00 0.00 3.41
4252 12981 3.194116 ACGTCCGTATGTTGTAGTCCATT 59.806 43.478 0.00 0.00 0.00 3.16
4259 12988 6.966632 CCGTATGTTGTAGTCCATTTGAAATG 59.033 38.462 10.84 10.84 0.00 2.32
4264 12993 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
4329 13058 1.228124 TGGCACTAACACCACCAGC 60.228 57.895 0.00 0.00 0.00 4.85
4343 13072 2.260869 CCAGCAGTCCAAACACCCG 61.261 63.158 0.00 0.00 0.00 5.28
4370 13099 3.635373 AGTGTTTCACTGAAGTCCGTAGA 59.365 43.478 1.44 0.00 43.63 2.59
4371 13100 4.098960 AGTGTTTCACTGAAGTCCGTAGAA 59.901 41.667 1.44 0.00 43.63 2.10
4372 13101 4.989168 GTGTTTCACTGAAGTCCGTAGAAT 59.011 41.667 0.00 0.00 0.00 2.40
4373 13102 5.465724 GTGTTTCACTGAAGTCCGTAGAATT 59.534 40.000 0.00 0.00 31.77 2.17
4374 13103 5.694910 TGTTTCACTGAAGTCCGTAGAATTC 59.305 40.000 0.00 0.00 45.23 2.17
4385 13114 9.623350 GAAGTCCGTAGAATTCATAACCTATAC 57.377 37.037 8.44 0.00 44.57 1.47
4474 13292 8.654094 TGATGGTATCTGAGAACAACATATGAT 58.346 33.333 10.38 0.00 0.00 2.45
4615 13433 4.212214 GTCTGCACTTTAGCTATATGGTGC 59.788 45.833 22.39 22.39 46.65 5.01
4647 13475 9.004717 GGGATTTACCTCTTCTTATCTTAATGC 57.995 37.037 0.00 0.00 38.98 3.56
4759 13588 3.617263 GGCCGTTGTTATTACTGTGAGAG 59.383 47.826 0.00 0.00 0.00 3.20
4826 13655 0.874607 GTGACACCGACTTTGAGCGT 60.875 55.000 0.00 0.00 0.00 5.07
4856 13685 2.506438 GACCGCAGTAGCACGACC 60.506 66.667 0.00 0.00 42.27 4.79
4899 13728 7.800380 GTGATGGCGAGTTTATAATTGATTCTG 59.200 37.037 0.00 0.00 0.00 3.02
4908 13737 9.890629 AGTTTATAATTGATTCTGCTGTAGACA 57.109 29.630 0.00 0.00 34.43 3.41
4934 13763 5.759059 TGTGAGGAGGATTGCATCTATTTT 58.241 37.500 0.00 0.00 0.00 1.82
5007 13836 0.042581 TATGCAGGGTCCCAGACTCA 59.957 55.000 11.55 0.33 35.11 3.41
5013 13842 2.840651 CAGGGTCCCAGACTCATTTAGT 59.159 50.000 11.55 0.00 42.80 2.24
5035 13865 6.342111 AGTATACTTTCAGCTTCAAGCCTAC 58.658 40.000 5.53 4.60 43.77 3.18
5050 13880 2.302157 AGCCTACTTTGTTACCTTCGCT 59.698 45.455 0.00 0.00 0.00 4.93
5057 13887 5.362263 ACTTTGTTACCTTCGCTTGAACTA 58.638 37.500 0.00 0.00 0.00 2.24
5078 13909 2.040544 CCCGGGATGTTGCACAGAC 61.041 63.158 18.48 0.00 0.00 3.51
5107 13938 5.337009 GGTTCATCAAGGATGCTCACATTTT 60.337 40.000 1.37 0.00 39.63 1.82
5118 13949 2.289002 GCTCACATTTTCTATGCGAGGG 59.711 50.000 0.00 0.00 31.03 4.30
5138 13969 4.158025 AGGGTATACATCGATCATCCGTTC 59.842 45.833 5.01 0.00 0.00 3.95
5139 13970 4.082408 GGGTATACATCGATCATCCGTTCA 60.082 45.833 5.01 0.00 0.00 3.18
5140 13971 5.096169 GGTATACATCGATCATCCGTTCAG 58.904 45.833 5.01 0.00 0.00 3.02
5141 13972 4.855715 ATACATCGATCATCCGTTCAGT 57.144 40.909 0.00 0.00 0.00 3.41
5143 13974 3.966154 ACATCGATCATCCGTTCAGTAC 58.034 45.455 0.00 0.00 0.00 2.73
5146 13977 3.014623 TCGATCATCCGTTCAGTACTGT 58.985 45.455 21.99 0.00 0.00 3.55
5147 13978 3.442625 TCGATCATCCGTTCAGTACTGTT 59.557 43.478 21.99 0.00 0.00 3.16
5148 13979 3.547868 CGATCATCCGTTCAGTACTGTTG 59.452 47.826 21.99 12.62 0.00 3.33
5149 13980 3.313012 TCATCCGTTCAGTACTGTTGG 57.687 47.619 21.99 19.98 0.00 3.77
5150 13981 1.732259 CATCCGTTCAGTACTGTTGGC 59.268 52.381 21.99 9.95 0.00 4.52
5151 13982 0.319211 TCCGTTCAGTACTGTTGGCG 60.319 55.000 21.99 19.10 0.00 5.69
5152 13983 0.319211 CCGTTCAGTACTGTTGGCGA 60.319 55.000 21.99 0.00 0.00 5.54
5156 13987 2.806244 GTTCAGTACTGTTGGCGATGTT 59.194 45.455 21.99 0.00 0.00 2.71
5157 13988 2.412870 TCAGTACTGTTGGCGATGTTG 58.587 47.619 21.99 0.00 0.00 3.33
5158 13989 1.464608 CAGTACTGTTGGCGATGTTGG 59.535 52.381 15.06 0.00 0.00 3.77
5159 13990 0.168128 GTACTGTTGGCGATGTTGGC 59.832 55.000 0.00 0.00 0.00 4.52
5160 13991 0.250510 TACTGTTGGCGATGTTGGCA 60.251 50.000 0.00 0.00 43.36 4.92
5164 13995 2.115052 TGGCGATGTTGGCAAGGT 59.885 55.556 0.00 0.00 41.96 3.50
5165 13996 1.971167 TGGCGATGTTGGCAAGGTC 60.971 57.895 0.00 0.54 41.96 3.85
5167 13998 1.523154 GGCGATGTTGGCAAGGTCAA 61.523 55.000 0.00 0.00 0.00 3.18
5168 13999 0.527565 GCGATGTTGGCAAGGTCAAT 59.472 50.000 0.00 0.00 27.28 2.57
5169 14000 1.733389 GCGATGTTGGCAAGGTCAATG 60.733 52.381 0.00 0.00 27.28 2.82
5170 14001 1.811965 CGATGTTGGCAAGGTCAATGA 59.188 47.619 0.00 0.00 27.28 2.57
5172 14003 3.119388 CGATGTTGGCAAGGTCAATGATT 60.119 43.478 0.00 0.00 27.28 2.57
5174 14005 4.255833 TGTTGGCAAGGTCAATGATTTC 57.744 40.909 0.00 0.00 27.28 2.17
5175 14006 3.006752 TGTTGGCAAGGTCAATGATTTCC 59.993 43.478 0.00 0.00 27.28 3.13
5177 14008 2.827322 TGGCAAGGTCAATGATTTCCTG 59.173 45.455 0.43 0.00 0.00 3.86
5178 14009 2.827921 GGCAAGGTCAATGATTTCCTGT 59.172 45.455 0.43 0.00 0.00 4.00
5180 14011 3.256631 GCAAGGTCAATGATTTCCTGTGT 59.743 43.478 0.43 0.00 0.00 3.72
5181 14012 4.616835 GCAAGGTCAATGATTTCCTGTGTC 60.617 45.833 0.43 0.00 0.00 3.67
5182 14013 3.690460 AGGTCAATGATTTCCTGTGTCC 58.310 45.455 0.00 0.00 0.00 4.02
5183 14014 3.331889 AGGTCAATGATTTCCTGTGTCCT 59.668 43.478 0.00 0.00 0.00 3.85
5184 14015 3.691609 GGTCAATGATTTCCTGTGTCCTC 59.308 47.826 0.00 0.00 0.00 3.71
5187 14018 4.042062 TCAATGATTTCCTGTGTCCTCTGT 59.958 41.667 0.00 0.00 0.00 3.41
5188 14019 5.248248 TCAATGATTTCCTGTGTCCTCTGTA 59.752 40.000 0.00 0.00 0.00 2.74
5189 14020 5.965033 ATGATTTCCTGTGTCCTCTGTAT 57.035 39.130 0.00 0.00 0.00 2.29
5191 14022 6.126863 TGATTTCCTGTGTCCTCTGTATTT 57.873 37.500 0.00 0.00 0.00 1.40
5192 14023 6.173339 TGATTTCCTGTGTCCTCTGTATTTC 58.827 40.000 0.00 0.00 0.00 2.17
5195 14026 5.407407 TCCTGTGTCCTCTGTATTTCTTC 57.593 43.478 0.00 0.00 0.00 2.87
5197 14028 5.047021 TCCTGTGTCCTCTGTATTTCTTCAG 60.047 44.000 0.00 0.00 0.00 3.02
5200 14031 5.070446 TGTGTCCTCTGTATTTCTTCAGTGT 59.930 40.000 0.00 0.00 33.89 3.55
5201 14032 5.992217 GTGTCCTCTGTATTTCTTCAGTGTT 59.008 40.000 0.00 0.00 33.89 3.32
5202 14033 7.152645 GTGTCCTCTGTATTTCTTCAGTGTTA 58.847 38.462 0.00 0.00 33.89 2.41
5203 14034 7.819900 GTGTCCTCTGTATTTCTTCAGTGTTAT 59.180 37.037 0.00 0.00 33.89 1.89
5205 14036 9.303537 GTCCTCTGTATTTCTTCAGTGTTATAC 57.696 37.037 0.00 0.00 33.89 1.47
5206 14037 9.031537 TCCTCTGTATTTCTTCAGTGTTATACA 57.968 33.333 0.00 0.00 33.89 2.29
5210 14041 9.708222 CTGTATTTCTTCAGTGTTATACATTGC 57.292 33.333 0.00 0.00 36.01 3.56
5211 14042 9.448438 TGTATTTCTTCAGTGTTATACATTGCT 57.552 29.630 0.00 0.00 36.01 3.91
5217 14048 9.764363 TCTTCAGTGTTATACATTGCTAATAGG 57.236 33.333 0.00 0.00 36.01 2.57
5219 14050 8.257602 TCAGTGTTATACATTGCTAATAGGGA 57.742 34.615 0.00 0.00 36.01 4.20
5220 14051 8.710239 TCAGTGTTATACATTGCTAATAGGGAA 58.290 33.333 0.00 0.00 36.01 3.97
5221 14052 8.993121 CAGTGTTATACATTGCTAATAGGGAAG 58.007 37.037 0.00 0.00 29.25 3.46
5222 14053 7.661847 AGTGTTATACATTGCTAATAGGGAAGC 59.338 37.037 0.00 0.00 39.25 3.86
5229 17291 3.945346 TGCTAATAGGGAAGCGTTTTCA 58.055 40.909 0.00 0.00 41.77 2.69
5235 17297 6.679327 AATAGGGAAGCGTTTTCATACTTC 57.321 37.500 0.00 0.00 38.22 3.01
5246 17308 6.347881 CGTTTTCATACTTCGATAGCATGTC 58.652 40.000 0.00 0.00 0.00 3.06
5247 17309 6.199154 CGTTTTCATACTTCGATAGCATGTCT 59.801 38.462 0.00 0.00 0.00 3.41
5248 17310 7.340699 GTTTTCATACTTCGATAGCATGTCTG 58.659 38.462 0.00 0.00 0.00 3.51
5379 17737 5.240623 TGACTGTCACCCAAATTAACATCAC 59.759 40.000 6.36 0.00 0.00 3.06
5392 17750 7.706281 AATTAACATCACTCGACTGATCATC 57.294 36.000 4.76 0.00 0.00 2.92
5433 17791 2.021457 GCAAAAATTAGGCGCTCCCTA 58.979 47.619 7.64 0.00 44.08 3.53
5481 17839 6.920569 GCTAGCAAGCTTTACCAAACTATA 57.079 37.500 10.63 0.00 45.85 1.31
5482 17840 6.716438 GCTAGCAAGCTTTACCAAACTATAC 58.284 40.000 10.63 0.00 45.85 1.47
5483 17841 6.539103 GCTAGCAAGCTTTACCAAACTATACT 59.461 38.462 10.63 0.00 45.85 2.12
5605 17963 0.597568 CCTCGCCAACAGCAAATTCA 59.402 50.000 0.00 0.00 44.04 2.57
5613 17971 3.003689 CCAACAGCAAATTCAGAAGACGT 59.996 43.478 0.00 0.00 0.00 4.34
5620 17978 0.793478 ATTCAGAAGACGTCGACGCG 60.793 55.000 35.92 16.05 44.43 6.01
5749 18113 3.095347 GCTCCAGTCCGACATCCCC 62.095 68.421 0.40 0.00 0.00 4.81
5923 18287 3.918253 GAACTCCCGCATGCACCCA 62.918 63.158 19.57 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.733150 GCTTAGCAAAACCCGCTAGG 59.267 55.000 0.00 0.00 42.63 3.02
29 30 0.733150 GGCTTAGCAAAACCCGCTAG 59.267 55.000 6.53 0.00 42.63 3.42
32 33 1.212751 CAGGCTTAGCAAAACCCGC 59.787 57.895 6.53 0.00 0.00 6.13
48 49 3.001634 AGCATGAATACGCGACAATTCAG 59.998 43.478 26.91 21.75 43.34 3.02
90 91 6.017440 GCAATACCGCTTTATTCAGGTTCATA 60.017 38.462 0.00 0.00 38.12 2.15
92 93 4.095782 GCAATACCGCTTTATTCAGGTTCA 59.904 41.667 0.00 0.00 38.12 3.18
94 95 3.380320 GGCAATACCGCTTTATTCAGGTT 59.620 43.478 0.00 0.00 38.12 3.50
156 157 1.938577 GTCATGCATCTTCACTGCGAT 59.061 47.619 0.00 0.00 42.62 4.58
169 170 2.032117 GTGATGTGTCGTTTGTCATGCA 60.032 45.455 0.00 0.00 0.00 3.96
181 182 2.959516 TGAATGAGGTCGTGATGTGTC 58.040 47.619 0.00 0.00 0.00 3.67
216 217 2.461695 TCACTCATGAGGAAGAGGGAC 58.538 52.381 26.08 0.00 39.27 4.46
229 230 9.525826 AAGAACCTTCATTAAAGATTCACTCAT 57.474 29.630 0.00 0.00 39.67 2.90
248 249 9.905713 TGAGTAGCATGAATAAATAAAGAACCT 57.094 29.630 0.00 0.00 0.00 3.50
261 262 8.997323 GCTGAGTAAATTATGAGTAGCATGAAT 58.003 33.333 0.00 0.00 37.87 2.57
262 263 7.169813 CGCTGAGTAAATTATGAGTAGCATGAA 59.830 37.037 0.00 0.00 37.87 2.57
263 264 6.642540 CGCTGAGTAAATTATGAGTAGCATGA 59.357 38.462 0.00 0.00 37.87 3.07
264 265 6.642540 TCGCTGAGTAAATTATGAGTAGCATG 59.357 38.462 0.00 0.00 37.87 4.06
265 266 6.749139 TCGCTGAGTAAATTATGAGTAGCAT 58.251 36.000 0.00 0.00 41.08 3.79
266 267 6.144078 TCGCTGAGTAAATTATGAGTAGCA 57.856 37.500 0.00 0.00 0.00 3.49
267 268 6.074249 GGTTCGCTGAGTAAATTATGAGTAGC 60.074 42.308 0.00 0.00 0.00 3.58
268 269 7.203910 AGGTTCGCTGAGTAAATTATGAGTAG 58.796 38.462 0.00 0.00 0.00 2.57
269 270 7.108841 AGGTTCGCTGAGTAAATTATGAGTA 57.891 36.000 0.00 0.00 0.00 2.59
270 271 5.978814 AGGTTCGCTGAGTAAATTATGAGT 58.021 37.500 0.00 0.00 0.00 3.41
271 272 6.910536 AAGGTTCGCTGAGTAAATTATGAG 57.089 37.500 0.00 0.00 0.00 2.90
272 273 8.662141 GTTAAAGGTTCGCTGAGTAAATTATGA 58.338 33.333 0.00 0.00 0.00 2.15
273 274 7.634817 CGTTAAAGGTTCGCTGAGTAAATTATG 59.365 37.037 0.00 0.00 0.00 1.90
274 275 7.546667 TCGTTAAAGGTTCGCTGAGTAAATTAT 59.453 33.333 0.00 0.00 0.00 1.28
275 276 6.867816 TCGTTAAAGGTTCGCTGAGTAAATTA 59.132 34.615 0.00 0.00 0.00 1.40
276 277 5.697633 TCGTTAAAGGTTCGCTGAGTAAATT 59.302 36.000 0.00 0.00 0.00 1.82
277 278 5.232463 TCGTTAAAGGTTCGCTGAGTAAAT 58.768 37.500 0.00 0.00 0.00 1.40
278 279 4.619973 TCGTTAAAGGTTCGCTGAGTAAA 58.380 39.130 0.00 0.00 0.00 2.01
279 280 4.232221 CTCGTTAAAGGTTCGCTGAGTAA 58.768 43.478 0.00 0.00 0.00 2.24
280 281 3.366679 CCTCGTTAAAGGTTCGCTGAGTA 60.367 47.826 0.00 0.00 0.00 2.59
281 282 2.609737 CCTCGTTAAAGGTTCGCTGAGT 60.610 50.000 0.00 0.00 0.00 3.41
282 283 1.993370 CCTCGTTAAAGGTTCGCTGAG 59.007 52.381 0.00 0.00 0.00 3.35
283 284 1.337447 CCCTCGTTAAAGGTTCGCTGA 60.337 52.381 0.00 0.00 34.34 4.26
284 285 1.076332 CCCTCGTTAAAGGTTCGCTG 58.924 55.000 0.00 0.00 34.34 5.18
285 286 0.683412 ACCCTCGTTAAAGGTTCGCT 59.317 50.000 0.00 0.00 34.34 4.93
286 287 1.516161 AACCCTCGTTAAAGGTTCGC 58.484 50.000 0.00 0.00 39.75 4.70
289 290 6.370186 AATAGAGAACCCTCGTTAAAGGTT 57.630 37.500 0.00 0.00 46.48 3.50
290 291 6.370186 AAATAGAGAACCCTCGTTAAAGGT 57.630 37.500 0.00 0.00 44.08 3.50
300 301 8.268878 AGTAGCATGAATAAATAGAGAACCCT 57.731 34.615 0.00 0.00 0.00 4.34
321 322 9.331282 CCAGGAACTTAAGGAAATTATGAGTAG 57.669 37.037 7.53 0.00 34.60 2.57
334 336 3.769844 TGAGACTAGCCAGGAACTTAAGG 59.230 47.826 7.53 0.00 34.60 2.69
347 349 8.089115 AGTTCAACAAACTATTTGAGACTAGC 57.911 34.615 8.24 0.00 46.55 3.42
374 417 2.485903 GCAGAGATCAGATTCAGCTGG 58.514 52.381 15.13 0.00 36.55 4.85
383 426 0.826062 TCATTGGCGCAGAGATCAGA 59.174 50.000 10.83 0.00 0.00 3.27
391 434 0.241749 ATGTTGTGTCATTGGCGCAG 59.758 50.000 10.83 0.00 0.00 5.18
393 436 0.039256 ACATGTTGTGTCATTGGCGC 60.039 50.000 0.00 0.00 35.77 6.53
394 437 1.688793 CACATGTTGTGTCATTGGCG 58.311 50.000 0.00 0.00 43.08 5.69
420 463 7.419057 CCTGACTTCACCAAAGCCTTATAGATA 60.419 40.741 0.00 0.00 38.67 1.98
434 545 0.260230 TTTTGCCCCTGACTTCACCA 59.740 50.000 0.00 0.00 0.00 4.17
448 559 0.179153 GGATGCGAAGAGGCTTTTGC 60.179 55.000 12.10 12.10 46.64 3.68
461 572 1.139989 CATAGCCAAGTACGGATGCG 58.860 55.000 4.58 4.58 0.00 4.73
465 576 2.154567 AGACCATAGCCAAGTACGGA 57.845 50.000 0.00 0.00 0.00 4.69
471 582 3.070302 GGGAAGACTAGACCATAGCCAAG 59.930 52.174 0.00 0.00 0.00 3.61
472 583 3.039011 GGGAAGACTAGACCATAGCCAA 58.961 50.000 0.00 0.00 0.00 4.52
474 585 2.365941 GTGGGAAGACTAGACCATAGCC 59.634 54.545 0.00 0.00 35.13 3.93
477 588 4.055710 TGTGTGGGAAGACTAGACCATA 57.944 45.455 0.00 0.00 35.13 2.74
483 594 6.693315 TTTCTTTTTGTGTGGGAAGACTAG 57.307 37.500 0.00 0.00 0.00 2.57
484 595 6.434652 TGTTTTCTTTTTGTGTGGGAAGACTA 59.565 34.615 0.00 0.00 0.00 2.59
488 599 6.105333 TCATGTTTTCTTTTTGTGTGGGAAG 58.895 36.000 0.00 0.00 0.00 3.46
500 611 8.576442 ACTGGACGAAATATTCATGTTTTCTTT 58.424 29.630 0.00 0.00 0.00 2.52
508 619 7.539712 AACACTACTGGACGAAATATTCATG 57.460 36.000 0.00 0.00 0.00 3.07
512 623 9.661563 TTTCATAACACTACTGGACGAAATATT 57.338 29.630 0.00 0.00 0.00 1.28
513 624 9.661563 TTTTCATAACACTACTGGACGAAATAT 57.338 29.630 0.00 0.00 0.00 1.28
521 632 5.929992 CGGTTCTTTTCATAACACTACTGGA 59.070 40.000 0.00 0.00 0.00 3.86
550 661 2.640184 TGAGTATCTCACGTGACCGAT 58.360 47.619 15.76 18.55 35.39 4.18
752 989 9.921637 AAGTCAAACTACACAAAATTTGAGAAA 57.078 25.926 13.19 0.00 40.67 2.52
753 990 9.567848 GAAGTCAAACTACACAAAATTTGAGAA 57.432 29.630 13.19 0.00 40.67 2.87
754 991 8.735315 TGAAGTCAAACTACACAAAATTTGAGA 58.265 29.630 13.19 0.00 40.67 3.27
755 992 8.909708 TGAAGTCAAACTACACAAAATTTGAG 57.090 30.769 13.19 7.18 40.67 3.02
756 993 9.698309 TTTGAAGTCAAACTACACAAAATTTGA 57.302 25.926 13.19 0.00 40.55 2.69
787 1024 9.504708 TCCGTTTCTTTTACTCCACATATAAAA 57.495 29.630 0.00 0.00 0.00 1.52
788 1025 9.158233 CTCCGTTTCTTTTACTCCACATATAAA 57.842 33.333 0.00 0.00 0.00 1.40
789 1026 7.767198 CCTCCGTTTCTTTTACTCCACATATAA 59.233 37.037 0.00 0.00 0.00 0.98
790 1027 7.270047 CCTCCGTTTCTTTTACTCCACATATA 58.730 38.462 0.00 0.00 0.00 0.86
791 1028 6.113411 CCTCCGTTTCTTTTACTCCACATAT 58.887 40.000 0.00 0.00 0.00 1.78
792 1029 5.484715 CCTCCGTTTCTTTTACTCCACATA 58.515 41.667 0.00 0.00 0.00 2.29
793 1030 4.324267 CCTCCGTTTCTTTTACTCCACAT 58.676 43.478 0.00 0.00 0.00 3.21
794 1031 3.495453 CCCTCCGTTTCTTTTACTCCACA 60.495 47.826 0.00 0.00 0.00 4.17
795 1032 3.072211 CCCTCCGTTTCTTTTACTCCAC 58.928 50.000 0.00 0.00 0.00 4.02
796 1033 2.974099 TCCCTCCGTTTCTTTTACTCCA 59.026 45.455 0.00 0.00 0.00 3.86
797 1034 3.260128 TCTCCCTCCGTTTCTTTTACTCC 59.740 47.826 0.00 0.00 0.00 3.85
798 1035 4.532314 TCTCCCTCCGTTTCTTTTACTC 57.468 45.455 0.00 0.00 0.00 2.59
799 1036 4.968971 TTCTCCCTCCGTTTCTTTTACT 57.031 40.909 0.00 0.00 0.00 2.24
800 1037 5.001874 ACATTCTCCCTCCGTTTCTTTTAC 58.998 41.667 0.00 0.00 0.00 2.01
801 1038 5.001232 CACATTCTCCCTCCGTTTCTTTTA 58.999 41.667 0.00 0.00 0.00 1.52
802 1039 3.821033 CACATTCTCCCTCCGTTTCTTTT 59.179 43.478 0.00 0.00 0.00 2.27
803 1040 3.072476 TCACATTCTCCCTCCGTTTCTTT 59.928 43.478 0.00 0.00 0.00 2.52
804 1041 2.637872 TCACATTCTCCCTCCGTTTCTT 59.362 45.455 0.00 0.00 0.00 2.52
805 1042 2.257207 TCACATTCTCCCTCCGTTTCT 58.743 47.619 0.00 0.00 0.00 2.52
806 1043 2.762535 TCACATTCTCCCTCCGTTTC 57.237 50.000 0.00 0.00 0.00 2.78
807 1044 4.837093 TTATCACATTCTCCCTCCGTTT 57.163 40.909 0.00 0.00 0.00 3.60
808 1045 4.837093 TTTATCACATTCTCCCTCCGTT 57.163 40.909 0.00 0.00 0.00 4.44
809 1046 4.202367 GGATTTATCACATTCTCCCTCCGT 60.202 45.833 0.00 0.00 0.00 4.69
810 1047 4.202357 TGGATTTATCACATTCTCCCTCCG 60.202 45.833 0.00 0.00 0.00 4.63
811 1048 5.066593 GTGGATTTATCACATTCTCCCTCC 58.933 45.833 0.00 0.00 35.39 4.30
812 1049 5.066593 GGTGGATTTATCACATTCTCCCTC 58.933 45.833 0.00 0.00 36.90 4.30
813 1050 4.141158 GGGTGGATTTATCACATTCTCCCT 60.141 45.833 0.00 0.00 36.90 4.20
814 1051 4.145052 GGGTGGATTTATCACATTCTCCC 58.855 47.826 0.00 0.00 36.90 4.30
815 1052 4.792068 TGGGTGGATTTATCACATTCTCC 58.208 43.478 0.00 0.00 36.90 3.71
816 1053 6.547141 TCATTGGGTGGATTTATCACATTCTC 59.453 38.462 0.00 0.00 36.90 2.87
817 1054 6.434302 TCATTGGGTGGATTTATCACATTCT 58.566 36.000 0.00 0.00 36.90 2.40
818 1055 6.713762 TCATTGGGTGGATTTATCACATTC 57.286 37.500 0.00 0.00 36.90 2.67
819 1056 7.493499 TTTCATTGGGTGGATTTATCACATT 57.507 32.000 0.00 0.00 36.90 2.71
820 1057 7.493499 TTTTCATTGGGTGGATTTATCACAT 57.507 32.000 0.00 0.00 36.90 3.21
847 1084 2.790791 CCCTAGCCAGACAGAGCGG 61.791 68.421 0.00 0.00 0.00 5.52
870 1107 0.107410 TGTGGTAATGGATGTCCGGC 60.107 55.000 0.00 0.00 39.43 6.13
873 1110 2.238646 TGGACTGTGGTAATGGATGTCC 59.761 50.000 0.00 0.00 41.81 4.02
919 1156 1.320507 TACAGGGGCGGTTGTTTTTC 58.679 50.000 0.00 0.00 0.00 2.29
921 1158 1.034356 GTTACAGGGGCGGTTGTTTT 58.966 50.000 0.00 0.00 0.00 2.43
922 1159 0.106619 TGTTACAGGGGCGGTTGTTT 60.107 50.000 0.00 0.00 0.00 2.83
990 1228 1.002069 TGAGAACCATGGCCAGGAAT 58.998 50.000 21.32 6.81 0.00 3.01
992 1230 0.329261 CTTGAGAACCATGGCCAGGA 59.671 55.000 21.32 0.00 0.00 3.86
994 1232 1.651240 CGCTTGAGAACCATGGCCAG 61.651 60.000 13.05 0.00 0.00 4.85
1046 1284 0.378610 CGAGCTGTCGCATCTGTAGA 59.621 55.000 0.00 0.00 39.88 2.59
1185 1423 3.282745 GAAGCCGACGCAGAGACCA 62.283 63.158 0.00 0.00 37.52 4.02
1743 1981 1.925415 GCAATGCGTGGATGCTGTCA 61.925 55.000 0.00 0.00 37.12 3.58
1778 2016 0.036858 GGCGAGGTCTTCAAGCTTCT 60.037 55.000 0.00 0.00 35.33 2.85
1787 2025 0.896940 TGTTACTCCGGCGAGGTCTT 60.897 55.000 9.30 0.00 40.77 3.01
1790 2028 2.643232 GGTGTTACTCCGGCGAGGT 61.643 63.158 9.30 9.31 40.77 3.85
1810 2048 1.356124 AGCTCCAGATGGAACTGTGT 58.644 50.000 3.99 0.00 44.91 3.72
1883 2121 4.278669 TGAGGTAGAATCCGTAGATCTTGC 59.721 45.833 0.00 0.00 0.00 4.01
1884 2122 6.392625 TTGAGGTAGAATCCGTAGATCTTG 57.607 41.667 0.00 0.00 0.00 3.02
2063 2301 0.108207 GATCATGGTGGCCTGAGAGG 59.892 60.000 3.32 0.00 38.80 3.69
2069 2307 1.276859 TGAGCAGATCATGGTGGCCT 61.277 55.000 3.32 0.00 40.53 5.19
2130 2368 0.953471 AAGCGCGGATGTAAGCAACA 60.953 50.000 8.83 0.00 43.86 3.33
2211 2449 1.117150 CCATTTCCATTGCTCCCCAG 58.883 55.000 0.00 0.00 0.00 4.45
2227 2465 1.607467 GTCCCTGTTGCCTTGCCAT 60.607 57.895 0.00 0.00 0.00 4.40
2241 2479 0.901580 TAGTTCCCTCGGTGTGTCCC 60.902 60.000 0.00 0.00 0.00 4.46
2250 2488 3.193691 ACTGACTCAACATAGTTCCCTCG 59.806 47.826 0.00 0.00 0.00 4.63
2268 2506 0.530744 CCTTGTAGGCGCTGTACTGA 59.469 55.000 7.64 2.69 0.00 3.41
2304 2542 1.001641 ATCAGGTTCTGGGTGCTGC 60.002 57.895 0.00 0.00 31.51 5.25
2330 2568 6.385033 GGAAAGGATGACATGAAAAACTCTG 58.615 40.000 0.00 0.00 0.00 3.35
2334 2572 5.467035 TGGGAAAGGATGACATGAAAAAC 57.533 39.130 0.00 0.00 0.00 2.43
2347 2585 1.600058 AGAGGCATCATGGGAAAGGA 58.400 50.000 0.00 0.00 0.00 3.36
2372 2610 2.034878 CGAATGTCTCTCCATCCTCCA 58.965 52.381 0.00 0.00 0.00 3.86
2379 2617 4.405680 ACATCCAATACGAATGTCTCTCCA 59.594 41.667 0.00 0.00 0.00 3.86
2381 2619 4.747108 CCACATCCAATACGAATGTCTCTC 59.253 45.833 0.00 0.00 0.00 3.20
2382 2620 4.405680 TCCACATCCAATACGAATGTCTCT 59.594 41.667 0.00 0.00 0.00 3.10
2386 2624 4.058124 CGATCCACATCCAATACGAATGT 58.942 43.478 0.00 0.00 0.00 2.71
2388 2626 3.067106 GCGATCCACATCCAATACGAAT 58.933 45.455 0.00 0.00 0.00 3.34
2389 2627 2.159028 TGCGATCCACATCCAATACGAA 60.159 45.455 0.00 0.00 0.00 3.85
2390 2628 1.410882 TGCGATCCACATCCAATACGA 59.589 47.619 0.00 0.00 0.00 3.43
2391 2629 1.864565 TGCGATCCACATCCAATACG 58.135 50.000 0.00 0.00 0.00 3.06
2419 2657 3.439293 CGGTACAGTATTCAGACAGCAG 58.561 50.000 0.00 0.00 0.00 4.24
2430 2668 2.847441 TCATCGAGAGCGGTACAGTAT 58.153 47.619 0.00 0.00 38.28 2.12
2437 2675 1.066303 GACTGAATCATCGAGAGCGGT 59.934 52.381 0.00 0.00 38.28 5.68
2439 2677 1.764851 GGACTGAATCATCGAGAGCG 58.235 55.000 0.00 0.00 39.35 5.03
2440 2678 1.601663 CCGGACTGAATCATCGAGAGC 60.602 57.143 0.00 0.00 0.00 4.09
2444 2682 1.763968 ACTCCGGACTGAATCATCGA 58.236 50.000 0.00 0.00 0.00 3.59
2446 2684 3.381908 ACTGTACTCCGGACTGAATCATC 59.618 47.826 0.00 0.00 0.00 2.92
2447 2685 3.366396 ACTGTACTCCGGACTGAATCAT 58.634 45.455 0.00 0.00 0.00 2.45
2502 2740 3.555139 GGAAATCTCTCAGAATGCACGAG 59.445 47.826 0.00 0.00 34.76 4.18
2538 2989 4.377431 GCATTGACCTTCGTACAGACAAAG 60.377 45.833 0.00 0.00 0.00 2.77
2580 3031 0.676782 AACATACCCCAGTTCGCTGC 60.677 55.000 0.00 0.00 43.67 5.25
2649 3100 6.479006 TCATGGTGAAGAAAGAATCAGACAT 58.521 36.000 0.00 0.00 0.00 3.06
2764 3216 2.639327 CCAAGAAAGCAAGGGGCCG 61.639 63.158 0.00 0.00 46.50 6.13
2902 3354 1.026182 GCCAACATGACGGCTCATCA 61.026 55.000 18.92 0.00 45.29 3.07
2974 3426 5.698832 CACATGTTTTGATGAACATACGGT 58.301 37.500 0.00 0.00 45.75 4.83
2977 3429 8.915871 AATAGCACATGTTTTGATGAACATAC 57.084 30.769 0.00 0.00 45.75 2.39
2995 3447 8.283291 GGAACATATGTAACAAGCTAATAGCAC 58.717 37.037 15.28 3.98 45.56 4.40
3048 3500 4.651778 TCCAAAAGGTCACATCTGGTTAG 58.348 43.478 0.00 0.00 0.00 2.34
3055 3507 2.783135 TGCTCTCCAAAAGGTCACATC 58.217 47.619 0.00 0.00 0.00 3.06
4003 12729 9.520515 TCAGATGCCTTATTATATCCCTTTTTC 57.479 33.333 0.00 0.00 0.00 2.29
4064 12792 7.701539 ATTGCTGTGACACCATTTAAATAGA 57.298 32.000 2.45 0.00 0.00 1.98
4069 12797 7.040132 TCACATTATTGCTGTGACACCATTTAA 60.040 33.333 2.45 0.00 45.97 1.52
4070 12798 6.432472 TCACATTATTGCTGTGACACCATTTA 59.568 34.615 2.45 0.00 45.97 1.40
4101 12830 6.761714 CAGTAGTATTTTTATGGCGAGGTCTT 59.238 38.462 0.00 0.00 0.00 3.01
4103 12832 6.278363 TCAGTAGTATTTTTATGGCGAGGTC 58.722 40.000 0.00 0.00 0.00 3.85
4109 12838 9.425577 GGAGTAGATCAGTAGTATTTTTATGGC 57.574 37.037 0.00 0.00 0.00 4.40
4151 12880 8.871125 ACTTGTTGGAATCTCTAGAAAGACTTA 58.129 33.333 0.00 0.00 0.00 2.24
4160 12889 6.925211 TGTAGTCACTTGTTGGAATCTCTAG 58.075 40.000 0.00 0.00 0.00 2.43
4161 12890 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
4169 12898 5.464057 TGTTTCGTATGTAGTCACTTGTTGG 59.536 40.000 0.00 0.00 0.00 3.77
4172 12901 7.542534 TTTTGTTTCGTATGTAGTCACTTGT 57.457 32.000 0.00 0.00 0.00 3.16
4173 12902 8.279800 TCATTTTGTTTCGTATGTAGTCACTTG 58.720 33.333 0.00 0.00 0.00 3.16
4175 12904 7.656137 ACTCATTTTGTTTCGTATGTAGTCACT 59.344 33.333 0.00 0.00 0.00 3.41
4177 12906 7.654116 TCACTCATTTTGTTTCGTATGTAGTCA 59.346 33.333 0.00 0.00 0.00 3.41
4178 12907 8.014322 TCACTCATTTTGTTTCGTATGTAGTC 57.986 34.615 0.00 0.00 0.00 2.59
4179 12908 7.956420 TCACTCATTTTGTTTCGTATGTAGT 57.044 32.000 0.00 0.00 0.00 2.73
4181 12910 9.214957 AGATTCACTCATTTTGTTTCGTATGTA 57.785 29.630 0.00 0.00 0.00 2.29
4209 12938 9.395707 GGACGTATGTAGACATATTTTAGAGTG 57.604 37.037 5.69 0.00 40.53 3.51
4232 12961 5.172934 TCAAATGGACTACAACATACGGAC 58.827 41.667 0.00 0.00 0.00 4.79
4245 12974 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
4246 12975 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
4264 12993 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4329 13058 2.551912 GCCACGGGTGTTTGGACTG 61.552 63.158 0.00 0.00 34.46 3.51
4359 13088 9.623350 GTATAGGTTATGAATTCTACGGACTTC 57.377 37.037 7.05 0.00 33.50 3.01
4372 13101 9.967451 TTTGGATGAGTTTGTATAGGTTATGAA 57.033 29.630 0.00 0.00 0.00 2.57
4376 13105 8.682710 GCAATTTGGATGAGTTTGTATAGGTTA 58.317 33.333 0.00 0.00 0.00 2.85
4377 13106 7.363793 GGCAATTTGGATGAGTTTGTATAGGTT 60.364 37.037 0.00 0.00 0.00 3.50
4378 13107 6.096846 GGCAATTTGGATGAGTTTGTATAGGT 59.903 38.462 0.00 0.00 0.00 3.08
4379 13108 6.096705 TGGCAATTTGGATGAGTTTGTATAGG 59.903 38.462 0.00 0.00 0.00 2.57
4380 13109 6.974622 GTGGCAATTTGGATGAGTTTGTATAG 59.025 38.462 0.00 0.00 0.00 1.31
4381 13110 6.663093 AGTGGCAATTTGGATGAGTTTGTATA 59.337 34.615 0.00 0.00 0.00 1.47
4382 13111 5.481473 AGTGGCAATTTGGATGAGTTTGTAT 59.519 36.000 0.00 0.00 0.00 2.29
4383 13112 4.832266 AGTGGCAATTTGGATGAGTTTGTA 59.168 37.500 0.00 0.00 0.00 2.41
4384 13113 3.642848 AGTGGCAATTTGGATGAGTTTGT 59.357 39.130 0.00 0.00 0.00 2.83
4385 13114 3.991773 CAGTGGCAATTTGGATGAGTTTG 59.008 43.478 0.00 0.00 0.00 2.93
4481 13299 8.846943 TTGTAATGATGAAGCTCTAAAAGACA 57.153 30.769 0.00 0.00 0.00 3.41
4500 13318 6.152323 AGCATGCTCAGAATGTTTCTTGTAAT 59.848 34.615 16.30 0.00 38.11 1.89
4503 13321 3.825014 AGCATGCTCAGAATGTTTCTTGT 59.175 39.130 16.30 0.00 38.11 3.16
4615 13433 8.929487 AGATAAGAAGAGGTAAATCCCTAACAG 58.071 37.037 0.00 0.00 34.03 3.16
4644 13472 3.851458 TCATCACTTCATAGCCTGCAT 57.149 42.857 0.00 0.00 0.00 3.96
4647 13475 8.618702 AAAGATTATCATCACTTCATAGCCTG 57.381 34.615 0.00 0.00 0.00 4.85
4674 13502 7.889469 AGCAACAAGAAAATATCTGTGTGAAT 58.111 30.769 0.00 0.00 38.79 2.57
4694 13522 4.170292 AGCAATCATCAGTTCAAGCAAC 57.830 40.909 0.00 0.00 34.86 4.17
4759 13588 5.163713 GGATGTACAATCTTTGCACCTTCTC 60.164 44.000 0.00 0.00 0.00 2.87
4826 13655 4.201679 CGGTCACCGCGAGCCATA 62.202 66.667 8.23 0.00 41.17 2.74
4899 13728 3.891977 TCCTCCTCACATATGTCTACAGC 59.108 47.826 5.07 0.00 0.00 4.40
4934 13763 3.845259 GCGTCCCTACCGGCATCA 61.845 66.667 0.00 0.00 0.00 3.07
4942 13771 0.887387 TGCAAACTTGGCGTCCCTAC 60.887 55.000 0.00 0.00 0.00 3.18
5007 13836 8.049721 AGGCTTGAAGCTGAAAGTATACTAAAT 58.950 33.333 17.59 0.00 41.99 1.40
5013 13842 6.546428 AGTAGGCTTGAAGCTGAAAGTATA 57.454 37.500 17.59 2.29 41.99 1.47
5035 13865 4.813296 AGTTCAAGCGAAGGTAACAAAG 57.187 40.909 0.00 0.00 37.06 2.77
5050 13880 0.916086 ACATCCCGGGCATAGTTCAA 59.084 50.000 18.49 0.00 0.00 2.69
5057 13887 2.755469 GTGCAACATCCCGGGCAT 60.755 61.111 18.49 7.71 38.68 4.40
5078 13909 4.133078 GAGCATCCTTGATGAACCTAAGG 58.867 47.826 8.21 0.00 42.09 2.69
5107 13938 3.946606 TCGATGTATACCCTCGCATAGA 58.053 45.455 16.12 0.42 32.62 1.98
5118 13949 5.700846 ACTGAACGGATGATCGATGTATAC 58.299 41.667 0.54 0.00 0.00 1.47
5138 13969 1.464608 CCAACATCGCCAACAGTACTG 59.535 52.381 21.44 21.44 0.00 2.74
5139 13970 1.808411 CCAACATCGCCAACAGTACT 58.192 50.000 0.00 0.00 0.00 2.73
5140 13971 0.168128 GCCAACATCGCCAACAGTAC 59.832 55.000 0.00 0.00 0.00 2.73
5141 13972 0.250510 TGCCAACATCGCCAACAGTA 60.251 50.000 0.00 0.00 0.00 2.74
5143 13974 0.387622 CTTGCCAACATCGCCAACAG 60.388 55.000 0.00 0.00 0.00 3.16
5146 13977 1.523154 GACCTTGCCAACATCGCCAA 61.523 55.000 0.00 0.00 0.00 4.52
5147 13978 1.971167 GACCTTGCCAACATCGCCA 60.971 57.895 0.00 0.00 0.00 5.69
5148 13979 1.523154 TTGACCTTGCCAACATCGCC 61.523 55.000 0.00 0.00 0.00 5.54
5149 13980 0.527565 ATTGACCTTGCCAACATCGC 59.472 50.000 0.00 0.00 0.00 4.58
5150 13981 1.811965 TCATTGACCTTGCCAACATCG 59.188 47.619 0.00 0.00 0.00 3.84
5151 13982 4.460948 AATCATTGACCTTGCCAACATC 57.539 40.909 0.00 0.00 0.00 3.06
5152 13983 4.322953 GGAAATCATTGACCTTGCCAACAT 60.323 41.667 0.00 0.00 0.00 2.71
5156 13987 2.827322 CAGGAAATCATTGACCTTGCCA 59.173 45.455 0.81 0.00 0.00 4.92
5157 13988 2.827921 ACAGGAAATCATTGACCTTGCC 59.172 45.455 0.00 0.00 0.00 4.52
5158 13989 3.256631 ACACAGGAAATCATTGACCTTGC 59.743 43.478 0.00 0.00 0.00 4.01
5159 13990 4.082571 GGACACAGGAAATCATTGACCTTG 60.083 45.833 0.00 0.00 0.00 3.61
5160 13991 4.082125 GGACACAGGAAATCATTGACCTT 58.918 43.478 0.00 0.00 0.00 3.50
5161 13992 3.331889 AGGACACAGGAAATCATTGACCT 59.668 43.478 0.00 0.00 0.00 3.85
5162 13993 3.690460 AGGACACAGGAAATCATTGACC 58.310 45.455 0.00 0.00 0.00 4.02
5163 13994 4.394300 CAGAGGACACAGGAAATCATTGAC 59.606 45.833 0.00 0.00 0.00 3.18
5164 13995 4.042062 ACAGAGGACACAGGAAATCATTGA 59.958 41.667 0.00 0.00 0.00 2.57
5165 13996 4.330250 ACAGAGGACACAGGAAATCATTG 58.670 43.478 0.00 0.00 0.00 2.82
5167 13998 5.965033 ATACAGAGGACACAGGAAATCAT 57.035 39.130 0.00 0.00 0.00 2.45
5168 13999 5.762179 AATACAGAGGACACAGGAAATCA 57.238 39.130 0.00 0.00 0.00 2.57
5169 14000 6.410540 AGAAATACAGAGGACACAGGAAATC 58.589 40.000 0.00 0.00 0.00 2.17
5170 14001 6.380079 AGAAATACAGAGGACACAGGAAAT 57.620 37.500 0.00 0.00 0.00 2.17
5172 14003 5.306937 TGAAGAAATACAGAGGACACAGGAA 59.693 40.000 0.00 0.00 0.00 3.36
5174 14005 5.152623 TGAAGAAATACAGAGGACACAGG 57.847 43.478 0.00 0.00 0.00 4.00
5175 14006 5.636965 CACTGAAGAAATACAGAGGACACAG 59.363 44.000 0.00 0.00 37.54 3.66
5177 14008 5.542779 ACACTGAAGAAATACAGAGGACAC 58.457 41.667 0.00 0.00 37.54 3.67
5178 14009 5.808366 ACACTGAAGAAATACAGAGGACA 57.192 39.130 0.00 0.00 37.54 4.02
5180 14011 9.031537 TGTATAACACTGAAGAAATACAGAGGA 57.968 33.333 0.00 0.00 37.54 3.71
5181 14012 9.823647 ATGTATAACACTGAAGAAATACAGAGG 57.176 33.333 0.00 0.00 34.38 3.69
5184 14015 9.708222 GCAATGTATAACACTGAAGAAATACAG 57.292 33.333 0.00 0.00 34.38 2.74
5191 14022 9.764363 CCTATTAGCAATGTATAACACTGAAGA 57.236 33.333 0.00 0.00 24.12 2.87
5192 14023 8.993121 CCCTATTAGCAATGTATAACACTGAAG 58.007 37.037 0.00 0.00 24.12 3.02
5195 14026 8.902540 TTCCCTATTAGCAATGTATAACACTG 57.097 34.615 0.00 0.00 0.00 3.66
5197 14028 7.360101 CGCTTCCCTATTAGCAATGTATAACAC 60.360 40.741 0.00 0.00 37.23 3.32
5200 14031 6.765403 ACGCTTCCCTATTAGCAATGTATAA 58.235 36.000 0.00 0.00 37.23 0.98
5201 14032 6.354794 ACGCTTCCCTATTAGCAATGTATA 57.645 37.500 0.00 0.00 37.23 1.47
5202 14033 5.228945 ACGCTTCCCTATTAGCAATGTAT 57.771 39.130 0.00 0.00 37.23 2.29
5203 14034 4.682778 ACGCTTCCCTATTAGCAATGTA 57.317 40.909 0.00 0.00 37.23 2.29
5205 14036 4.900635 AAACGCTTCCCTATTAGCAATG 57.099 40.909 0.00 0.00 37.23 2.82
5206 14037 4.947388 TGAAAACGCTTCCCTATTAGCAAT 59.053 37.500 0.00 0.00 37.23 3.56
5209 14040 5.758784 AGTATGAAAACGCTTCCCTATTAGC 59.241 40.000 0.00 0.00 0.00 3.09
5210 14041 7.306632 CGAAGTATGAAAACGCTTCCCTATTAG 60.307 40.741 0.00 0.00 35.28 1.73
5211 14042 6.477688 CGAAGTATGAAAACGCTTCCCTATTA 59.522 38.462 0.00 0.00 35.28 0.98
5212 14043 5.293569 CGAAGTATGAAAACGCTTCCCTATT 59.706 40.000 0.00 0.00 35.28 1.73
5214 14045 4.082081 TCGAAGTATGAAAACGCTTCCCTA 60.082 41.667 0.00 0.00 35.28 3.53
5215 14046 3.000727 CGAAGTATGAAAACGCTTCCCT 58.999 45.455 0.00 0.00 35.28 4.20
5216 14047 2.997986 TCGAAGTATGAAAACGCTTCCC 59.002 45.455 0.00 0.00 35.28 3.97
5217 14048 4.859629 ATCGAAGTATGAAAACGCTTCC 57.140 40.909 0.00 0.00 35.28 3.46
5219 14050 4.868171 TGCTATCGAAGTATGAAAACGCTT 59.132 37.500 0.00 0.00 0.00 4.68
5220 14051 4.430007 TGCTATCGAAGTATGAAAACGCT 58.570 39.130 0.00 0.00 0.00 5.07
5221 14052 4.772046 TGCTATCGAAGTATGAAAACGC 57.228 40.909 0.00 0.00 0.00 4.84
5246 17308 6.582437 TTCACATACGTATAACACATGCAG 57.418 37.500 7.96 0.00 0.00 4.41
5247 17309 6.758886 TGATTCACATACGTATAACACATGCA 59.241 34.615 7.96 0.00 0.00 3.96
5248 17310 7.172654 TGATTCACATACGTATAACACATGC 57.827 36.000 7.96 0.00 0.00 4.06
5249 17311 9.636965 CTTTGATTCACATACGTATAACACATG 57.363 33.333 7.96 0.00 0.00 3.21
5251 17313 8.766000 ACTTTGATTCACATACGTATAACACA 57.234 30.769 7.96 2.04 0.00 3.72
5254 17316 9.698617 GGAAACTTTGATTCACATACGTATAAC 57.301 33.333 7.96 0.00 0.00 1.89
5257 17319 6.592607 ACGGAAACTTTGATTCACATACGTAT 59.407 34.615 1.14 1.14 0.00 3.06
5259 17321 4.753107 ACGGAAACTTTGATTCACATACGT 59.247 37.500 0.00 0.00 0.00 3.57
5260 17322 5.277601 ACGGAAACTTTGATTCACATACG 57.722 39.130 0.00 0.00 0.00 3.06
5261 17323 5.856455 CCAACGGAAACTTTGATTCACATAC 59.144 40.000 0.00 0.00 41.80 2.39
5379 17737 4.350346 GAAGTGTCTGATGATCAGTCGAG 58.650 47.826 20.82 0.00 44.58 4.04
5392 17750 3.878778 CAGGGGAATTAGGAAGTGTCTG 58.121 50.000 0.00 0.00 0.00 3.51
5481 17839 7.661536 TCTGACCTTATGCTTTGATAGTAGT 57.338 36.000 0.00 0.00 0.00 2.73
5482 17840 8.986847 CATTCTGACCTTATGCTTTGATAGTAG 58.013 37.037 0.00 0.00 0.00 2.57
5483 17841 8.486210 ACATTCTGACCTTATGCTTTGATAGTA 58.514 33.333 0.00 0.00 0.00 1.82
5605 17963 4.755614 GCCGCGTCGACGTCTTCT 62.756 66.667 35.48 0.00 42.22 2.85
5644 18008 1.200760 TGCTGGTGGTGCAGTCCTAT 61.201 55.000 0.00 0.00 35.31 2.57
5904 18268 2.045926 GGTGCATGCGGGAGTTCT 60.046 61.111 14.09 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.