Multiple sequence alignment - TraesCS6A01G310600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G310600 chr6A 100.000 3982 0 0 1 3982 546622715 546618734 0.000000e+00 7354.0
1 TraesCS6A01G310600 chr6A 92.708 1673 96 14 2162 3819 409119737 409121398 0.000000e+00 2390.0
2 TraesCS6A01G310600 chr6A 91.837 539 38 5 656 1193 409119171 409119704 0.000000e+00 747.0
3 TraesCS6A01G310600 chr6A 87.981 416 48 2 1264 1678 376681342 376680928 1.290000e-134 490.0
4 TraesCS6A01G310600 chr7A 94.755 3527 146 23 469 3982 305701234 305697734 0.000000e+00 5452.0
5 TraesCS6A01G310600 chr7A 95.549 2314 92 6 469 2774 630248346 630246036 0.000000e+00 3692.0
6 TraesCS6A01G310600 chr7A 95.516 1115 38 8 2872 3982 630246037 630244931 0.000000e+00 1772.0
7 TraesCS6A01G310600 chr7A 87.723 953 73 26 1223 2144 675230335 675231274 0.000000e+00 1072.0
8 TraesCS6A01G310600 chr7A 92.128 470 30 7 10 475 305701725 305701259 0.000000e+00 656.0
9 TraesCS6A01G310600 chr7A 93.266 297 19 1 179 475 630248666 630248371 1.700000e-118 436.0
10 TraesCS6A01G310600 chr7B 94.278 1905 99 7 471 2370 660061311 660063210 0.000000e+00 2905.0
11 TraesCS6A01G310600 chr7B 95.004 1361 51 9 2468 3819 660063211 660064563 0.000000e+00 2121.0
12 TraesCS6A01G310600 chr7B 89.556 900 77 13 1224 2109 653019128 653018232 0.000000e+00 1125.0
13 TraesCS6A01G310600 chr7B 86.193 507 33 19 4 475 660060779 660061283 7.630000e-142 514.0
14 TraesCS6A01G310600 chr1D 93.401 1667 82 14 2165 3819 412547959 412546309 0.000000e+00 2444.0
15 TraesCS6A01G310600 chr1D 93.433 533 30 4 662 1193 412548523 412547995 0.000000e+00 785.0
16 TraesCS6A01G310600 chr6B 93.106 1668 92 12 2162 3819 553538699 553540353 0.000000e+00 2422.0
17 TraesCS6A01G310600 chr6B 85.028 354 33 15 4 340 216317321 216317671 3.810000e-90 342.0
18 TraesCS6A01G310600 chr6B 85.890 326 30 9 346 656 216317726 216318050 2.290000e-87 333.0
19 TraesCS6A01G310600 chr4A 93.046 1668 89 14 2162 3819 66422151 66420501 0.000000e+00 2412.0
20 TraesCS6A01G310600 chr4A 92.043 553 40 3 662 1213 66422717 66422168 0.000000e+00 774.0
21 TraesCS6A01G310600 chr4A 96.364 110 2 1 3873 3982 132833103 132833210 3.160000e-41 180.0
22 TraesCS6A01G310600 chr4A 96.296 108 4 0 3875 3982 464353412 464353305 1.140000e-40 178.0
23 TraesCS6A01G310600 chr4A 95.455 110 2 1 3873 3982 132810199 132810305 5.290000e-39 172.0
24 TraesCS6A01G310600 chrUn 92.331 1669 110 11 2162 3819 316628276 316629937 0.000000e+00 2357.0
25 TraesCS6A01G310600 chr2D 92.621 1667 77 16 2162 3816 154509546 154507914 0.000000e+00 2355.0
26 TraesCS6A01G310600 chr2D 93.621 533 29 4 662 1193 154510107 154509579 0.000000e+00 791.0
27 TraesCS6A01G310600 chr2D 92.512 414 30 1 1264 1676 87982037 87981624 3.430000e-165 592.0
28 TraesCS6A01G310600 chr2D 87.013 154 15 4 472 622 342001523 342001372 6.840000e-38 169.0
29 TraesCS6A01G310600 chr3A 92.091 1669 118 11 2162 3819 356687942 356689607 0.000000e+00 2338.0
30 TraesCS6A01G310600 chr3A 92.022 539 37 5 656 1193 356687376 356687909 0.000000e+00 752.0
31 TraesCS6A01G310600 chr3A 84.293 191 23 6 470 656 24931495 24931682 3.160000e-41 180.0
32 TraesCS6A01G310600 chr3A 96.296 108 4 0 3875 3982 607825867 607825974 1.140000e-40 178.0
33 TraesCS6A01G310600 chr3A 90.323 62 4 2 3923 3982 249175732 249175793 3.300000e-11 80.5
34 TraesCS6A01G310600 chr3B 92.031 1669 108 17 2162 3819 422098774 422097120 0.000000e+00 2322.0
35 TraesCS6A01G310600 chr3B 91.847 1668 111 13 2162 3819 565037379 565039031 0.000000e+00 2303.0
36 TraesCS6A01G310600 chr7D 89.823 904 67 12 1223 2109 584855246 584854351 0.000000e+00 1136.0
37 TraesCS6A01G310600 chr7D 90.490 673 51 8 1264 1928 92809591 92808924 0.000000e+00 876.0
38 TraesCS6A01G310600 chr7D 96.875 32 1 0 1956 1987 92808920 92808889 2.000000e-03 54.7
39 TraesCS6A01G310600 chr4D 93.393 560 25 7 656 1213 165302474 165303023 0.000000e+00 819.0
40 TraesCS6A01G310600 chr1A 79.545 704 66 35 24 656 344785932 344786628 7.910000e-117 431.0
41 TraesCS6A01G310600 chr1A 88.060 268 26 6 31 294 222461133 222460868 2.990000e-81 313.0
42 TraesCS6A01G310600 chr1A 92.405 158 10 2 3827 3982 295646119 295645962 1.440000e-54 224.0
43 TraesCS6A01G310600 chr1A 80.083 241 30 11 346 571 222460758 222460521 3.180000e-36 163.0
44 TraesCS6A01G310600 chr1A 75.781 384 54 27 284 638 250641315 250640942 1.480000e-34 158.0
45 TraesCS6A01G310600 chr1A 89.773 88 8 1 569 656 222459538 222459452 1.170000e-20 111.0
46 TraesCS6A01G310600 chr2A 97.222 36 1 0 468 503 92977614 92977649 1.190000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G310600 chr6A 546618734 546622715 3981 True 7354.000000 7354 100.0000 1 3982 1 chr6A.!!$R2 3981
1 TraesCS6A01G310600 chr6A 409119171 409121398 2227 False 1568.500000 2390 92.2725 656 3819 2 chr6A.!!$F1 3163
2 TraesCS6A01G310600 chr7A 305697734 305701725 3991 True 3054.000000 5452 93.4415 10 3982 2 chr7A.!!$R1 3972
3 TraesCS6A01G310600 chr7A 630244931 630248666 3735 True 1966.666667 3692 94.7770 179 3982 3 chr7A.!!$R2 3803
4 TraesCS6A01G310600 chr7A 675230335 675231274 939 False 1072.000000 1072 87.7230 1223 2144 1 chr7A.!!$F1 921
5 TraesCS6A01G310600 chr7B 660060779 660064563 3784 False 1846.666667 2905 91.8250 4 3819 3 chr7B.!!$F1 3815
6 TraesCS6A01G310600 chr7B 653018232 653019128 896 True 1125.000000 1125 89.5560 1224 2109 1 chr7B.!!$R1 885
7 TraesCS6A01G310600 chr1D 412546309 412548523 2214 True 1614.500000 2444 93.4170 662 3819 2 chr1D.!!$R1 3157
8 TraesCS6A01G310600 chr6B 553538699 553540353 1654 False 2422.000000 2422 93.1060 2162 3819 1 chr6B.!!$F1 1657
9 TraesCS6A01G310600 chr6B 216317321 216318050 729 False 337.500000 342 85.4590 4 656 2 chr6B.!!$F2 652
10 TraesCS6A01G310600 chr4A 66420501 66422717 2216 True 1593.000000 2412 92.5445 662 3819 2 chr4A.!!$R2 3157
11 TraesCS6A01G310600 chrUn 316628276 316629937 1661 False 2357.000000 2357 92.3310 2162 3819 1 chrUn.!!$F1 1657
12 TraesCS6A01G310600 chr2D 154507914 154510107 2193 True 1573.000000 2355 93.1210 662 3816 2 chr2D.!!$R3 3154
13 TraesCS6A01G310600 chr3A 356687376 356689607 2231 False 1545.000000 2338 92.0565 656 3819 2 chr3A.!!$F4 3163
14 TraesCS6A01G310600 chr3B 422097120 422098774 1654 True 2322.000000 2322 92.0310 2162 3819 1 chr3B.!!$R1 1657
15 TraesCS6A01G310600 chr3B 565037379 565039031 1652 False 2303.000000 2303 91.8470 2162 3819 1 chr3B.!!$F1 1657
16 TraesCS6A01G310600 chr7D 584854351 584855246 895 True 1136.000000 1136 89.8230 1223 2109 1 chr7D.!!$R1 886
17 TraesCS6A01G310600 chr7D 92808889 92809591 702 True 465.350000 876 93.6825 1264 1987 2 chr7D.!!$R2 723
18 TraesCS6A01G310600 chr4D 165302474 165303023 549 False 819.000000 819 93.3930 656 1213 1 chr4D.!!$F1 557
19 TraesCS6A01G310600 chr1A 344785932 344786628 696 False 431.000000 431 79.5450 24 656 1 chr1A.!!$F1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 875 0.530870 GGATCTACTCGGTTGCTGGC 60.531 60.0 0.00 0.0 0.00 4.85 F
1304 1456 0.320946 GGTTGGGCGTGCAAGTACTA 60.321 55.0 0.00 0.0 0.00 1.82 F
1992 2190 0.525668 GACGAGGCGACGAACATGAT 60.526 55.0 13.15 0.0 37.03 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 1733 0.107312 CCTCCTGCTCCTTGGACATG 60.107 60.0 0.00 0.0 0.0 3.21 R
2297 2500 0.835941 AGGTAGCATGGCAGGAGAAG 59.164 55.0 1.99 0.0 0.0 2.85 R
3532 3794 0.951558 ACTGCACCACCGACATTTTC 59.048 50.0 0.00 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 200 0.626382 TCACCTCTGTCGGATCTCCT 59.374 55.000 0.00 0.00 0.00 3.69
204 209 1.187087 GTCGGATCTCCTGACACCTT 58.813 55.000 12.99 0.00 38.50 3.50
212 217 4.379243 CTGACACCTTCCGCCGCT 62.379 66.667 0.00 0.00 0.00 5.52
278 287 1.071471 CACTTCCTTCCACACGGCT 59.929 57.895 0.00 0.00 0.00 5.52
433 542 2.692368 GCCATCCTCCCCACTCCA 60.692 66.667 0.00 0.00 0.00 3.86
434 543 2.081161 GCCATCCTCCCCACTCCAT 61.081 63.158 0.00 0.00 0.00 3.41
435 544 2.061790 GCCATCCTCCCCACTCCATC 62.062 65.000 0.00 0.00 0.00 3.51
436 545 1.750930 CATCCTCCCCACTCCATCG 59.249 63.158 0.00 0.00 0.00 3.84
437 546 2.143419 ATCCTCCCCACTCCATCGC 61.143 63.158 0.00 0.00 0.00 4.58
438 547 2.611964 ATCCTCCCCACTCCATCGCT 62.612 60.000 0.00 0.00 0.00 4.93
439 548 2.503061 CTCCCCACTCCATCGCTG 59.497 66.667 0.00 0.00 0.00 5.18
440 549 3.746949 CTCCCCACTCCATCGCTGC 62.747 68.421 0.00 0.00 0.00 5.25
441 550 4.864334 CCCCACTCCATCGCTGCC 62.864 72.222 0.00 0.00 0.00 4.85
442 551 4.100084 CCCACTCCATCGCTGCCA 62.100 66.667 0.00 0.00 0.00 4.92
443 552 2.821366 CCACTCCATCGCTGCCAC 60.821 66.667 0.00 0.00 0.00 5.01
444 553 2.821366 CACTCCATCGCTGCCACC 60.821 66.667 0.00 0.00 0.00 4.61
445 554 4.101448 ACTCCATCGCTGCCACCC 62.101 66.667 0.00 0.00 0.00 4.61
446 555 4.864334 CTCCATCGCTGCCACCCC 62.864 72.222 0.00 0.00 0.00 4.95
734 875 0.530870 GGATCTACTCGGTTGCTGGC 60.531 60.000 0.00 0.00 0.00 4.85
735 876 0.872021 GATCTACTCGGTTGCTGGCG 60.872 60.000 0.00 0.00 0.00 5.69
736 877 1.605058 ATCTACTCGGTTGCTGGCGT 61.605 55.000 0.00 0.00 0.00 5.68
737 878 0.961857 TCTACTCGGTTGCTGGCGTA 60.962 55.000 0.00 0.00 0.00 4.42
946 1092 6.127310 ACTGCATAGAACTTAACTGTCTAGGG 60.127 42.308 0.00 0.00 0.00 3.53
1036 1182 0.806868 CGTTCAACTCATGCAGCCAT 59.193 50.000 0.00 0.00 0.00 4.40
1108 1254 0.324614 TCTGGGCATGTGTCGATGTT 59.675 50.000 0.00 0.00 0.00 2.71
1298 1450 2.520500 ATGTGGTTGGGCGTGCAA 60.521 55.556 0.00 0.00 0.00 4.08
1304 1456 0.320946 GGTTGGGCGTGCAAGTACTA 60.321 55.000 0.00 0.00 0.00 1.82
1446 1598 2.505819 GTGGGACTTCACCATGGACTAT 59.494 50.000 21.47 0.00 40.70 2.12
1495 1647 1.005984 TACAACAAGGCGTGCGCTA 60.006 52.632 16.21 0.00 41.60 4.26
1541 1693 2.753029 GCTGGAGAAGGTGCTGGT 59.247 61.111 0.00 0.00 0.00 4.00
1581 1733 2.778679 GACGCTGACAATGCCGTC 59.221 61.111 0.00 0.00 36.40 4.79
1582 1734 2.027073 GACGCTGACAATGCCGTCA 61.027 57.895 7.09 2.44 43.54 4.35
1670 1823 1.374125 TCATCAACGGCGTCCAGTG 60.374 57.895 15.17 8.25 0.00 3.66
1719 1885 1.234821 TGCGCCGTCTCTTTCATTTT 58.765 45.000 4.18 0.00 0.00 1.82
1728 1894 3.127030 GTCTCTTTCATTTTTCCGGCGAT 59.873 43.478 9.30 0.00 0.00 4.58
1784 1964 2.604686 AAGCTGGAGAGGACGGCA 60.605 61.111 0.00 0.00 42.62 5.69
1942 2140 1.668919 GCAGACATGGAGACGAACGAA 60.669 52.381 0.00 0.00 0.00 3.85
1954 2152 2.031919 AACGAATGCCTGCACCGA 59.968 55.556 18.38 0.00 32.41 4.69
1992 2190 0.525668 GACGAGGCGACGAACATGAT 60.526 55.000 13.15 0.00 37.03 2.45
2126 2326 2.817258 CCTCTCGATAGCACTAGGGAAG 59.183 54.545 0.00 0.00 0.00 3.46
2129 2329 3.072622 TCTCGATAGCACTAGGGAAGCTA 59.927 47.826 0.00 3.51 44.10 3.32
2160 2360 3.808466 TCACTCATAGTCTCATGTGCC 57.192 47.619 0.00 0.00 0.00 5.01
2297 2500 2.625737 TCTGATGAAGCAAGCACTAGC 58.374 47.619 0.00 0.00 42.56 3.42
2358 2561 3.256879 TCAGTAGACAGAGCTTGACAAGG 59.743 47.826 16.80 2.73 0.00 3.61
2379 2582 3.255642 GGTAGAAATGCAACATGTGGTGT 59.744 43.478 0.00 0.00 44.84 4.16
2466 2673 6.152154 GTGTTTAGGCTTACCACCACATTTAT 59.848 38.462 0.00 0.00 39.06 1.40
2501 2708 1.229625 TCCTCCACCATGCTCCTGT 60.230 57.895 0.00 0.00 0.00 4.00
2571 2778 4.062991 GGACGAAATTCCAACTGTACTGT 58.937 43.478 0.00 0.00 35.49 3.55
2588 2795 3.464828 ACTGTAACCCCTCAAGATCCAT 58.535 45.455 0.00 0.00 0.00 3.41
2750 2960 3.072184 AGGAGCAAACAATGTCTCTCACT 59.928 43.478 10.17 4.45 34.56 3.41
2936 3152 1.803334 GACCGTTCAACTATGCCACA 58.197 50.000 0.00 0.00 0.00 4.17
3249 3502 6.368791 GGAGCAGTTTGGATTTGGTATTTTTC 59.631 38.462 0.00 0.00 0.00 2.29
3277 3531 6.480651 CAGTTTGGCACCGTGTTATATGTATA 59.519 38.462 0.00 0.00 0.00 1.47
3280 3534 8.991026 GTTTGGCACCGTGTTATATGTATATTA 58.009 33.333 0.00 0.00 0.00 0.98
3532 3794 2.767505 ACGCTGGAAGTTTGTAGAAGG 58.232 47.619 0.00 0.00 35.30 3.46
3783 4051 3.080300 TCGCCTACCAAAATGTCCAAT 57.920 42.857 0.00 0.00 0.00 3.16
3910 4179 9.606631 CTAGAAGCTCAATTAAAATACTGGAGT 57.393 33.333 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 6.090898 GCGCCGTGATCATAATAGTTATTCTT 59.909 38.462 0.00 0.00 0.00 2.52
70 71 3.181475 CCTATATAAGGCGCCGTGATCAT 60.181 47.826 25.89 12.73 38.97 2.45
140 144 1.603236 GGTTGGGAATGCGCCAATCA 61.603 55.000 4.18 0.00 30.41 2.57
148 152 2.683572 GGGTGGGGTTGGGAATGC 60.684 66.667 0.00 0.00 0.00 3.56
196 200 4.680237 CAGCGGCGGAAGGTGTCA 62.680 66.667 9.78 0.00 32.96 3.58
255 264 2.281484 GTGGAAGGAAGTGCGGCA 60.281 61.111 0.00 0.00 0.00 5.69
447 556 1.973812 GTGGGTTTCAGCTGGGAGC 60.974 63.158 15.13 11.98 42.84 4.70
448 557 1.672356 CGTGGGTTTCAGCTGGGAG 60.672 63.158 15.13 0.00 0.00 4.30
449 558 2.144078 TCGTGGGTTTCAGCTGGGA 61.144 57.895 15.13 0.00 0.00 4.37
450 559 1.966451 GTCGTGGGTTTCAGCTGGG 60.966 63.158 15.13 0.00 0.00 4.45
734 875 1.918609 GTAGCCTCGAAGCAAACTACG 59.081 52.381 9.03 0.00 34.23 3.51
735 876 3.180613 GAGTAGCCTCGAAGCAAACTAC 58.819 50.000 9.03 2.07 33.09 2.73
736 877 2.823747 TGAGTAGCCTCGAAGCAAACTA 59.176 45.455 9.03 0.00 40.85 2.24
737 878 1.618837 TGAGTAGCCTCGAAGCAAACT 59.381 47.619 9.03 10.94 40.85 2.66
904 1050 2.543848 GCAGTTCAATCAGTCGACACAA 59.456 45.455 19.50 2.40 0.00 3.33
946 1092 4.012895 CGCGTGACACCCTTGCAC 62.013 66.667 0.00 0.00 0.00 4.57
1108 1254 5.440610 AGAGAAAGAAAGAGCTTCAACCAA 58.559 37.500 0.00 0.00 36.40 3.67
1228 1374 0.321122 AAAGCTTCCTCGACCAGCAG 60.321 55.000 0.00 0.00 35.88 4.24
1298 1450 3.512516 GGTCCGGCGCGTAGTACT 61.513 66.667 8.43 0.00 0.00 2.73
1390 1542 4.329545 GCTCTCGTTGGCCACCCA 62.330 66.667 3.88 0.00 40.06 4.51
1446 1598 1.450134 CATGGAGCACCGCAGCTTA 60.450 57.895 1.28 0.00 46.75 3.09
1481 1633 2.742372 CCTTAGCGCACGCCTTGT 60.742 61.111 11.47 0.00 43.17 3.16
1581 1733 0.107312 CCTCCTGCTCCTTGGACATG 60.107 60.000 0.00 0.00 0.00 3.21
1582 1734 0.252881 TCCTCCTGCTCCTTGGACAT 60.253 55.000 0.00 0.00 0.00 3.06
1661 1814 2.740055 CACCTCTGCACTGGACGC 60.740 66.667 7.19 0.00 0.00 5.19
1695 1853 0.517316 GAAAGAGACGGCGCAACAAT 59.483 50.000 10.83 0.00 0.00 2.71
1699 1861 1.234821 AAATGAAAGAGACGGCGCAA 58.765 45.000 10.83 0.00 0.00 4.85
1719 1885 0.391130 CAGTTCTTCCATCGCCGGAA 60.391 55.000 5.05 5.41 42.89 4.30
1728 1894 4.067192 CACACATCATGTCAGTTCTTCCA 58.933 43.478 0.00 0.00 40.64 3.53
1784 1964 2.281070 CACACGGCCTTGAGCACT 60.281 61.111 17.43 0.00 46.50 4.40
1942 2140 3.055719 CCGTTTCGGTGCAGGCAT 61.056 61.111 0.00 0.00 42.73 4.40
1992 2190 2.134933 TACGTGTCCCTGCACACCA 61.135 57.895 0.00 0.00 43.34 4.17
2126 2326 1.208052 TGAGTGAACCTCCAGCATAGC 59.792 52.381 0.00 0.00 39.65 2.97
2129 2329 3.110705 ACTATGAGTGAACCTCCAGCAT 58.889 45.455 0.00 0.00 39.65 3.79
2199 2400 1.717032 TAGAGTGCACCTGGTTCACT 58.283 50.000 28.17 28.17 42.09 3.41
2291 2494 1.950828 CATGGCAGGAGAAGCTAGTG 58.049 55.000 0.00 0.00 0.00 2.74
2297 2500 0.835941 AGGTAGCATGGCAGGAGAAG 59.164 55.000 1.99 0.00 0.00 2.85
2299 2502 1.065199 CAAAGGTAGCATGGCAGGAGA 60.065 52.381 1.99 0.00 0.00 3.71
2358 2561 4.503741 ACACCACATGTTGCATTTCTAC 57.496 40.909 0.00 0.00 38.98 2.59
2379 2582 3.368427 CGTGAGAAATGTGGCCTTCTCTA 60.368 47.826 24.87 13.70 45.19 2.43
2466 2673 2.170607 GAGGAGACCGAAAATGGATCCA 59.829 50.000 18.88 18.88 39.42 3.41
2501 2708 3.755628 GGCGGTGCAGTCGACCTA 61.756 66.667 13.01 0.00 0.00 3.08
2571 2778 4.295905 ACCTATGGATCTTGAGGGGTTA 57.704 45.455 10.71 0.00 33.02 2.85
2588 2795 6.313519 AGAGCTTGTGGATCATTTTACCTA 57.686 37.500 0.00 0.00 31.91 3.08
2645 2855 3.446442 AAGATCAGGCATGGACACTTT 57.554 42.857 0.00 0.00 0.00 2.66
2819 3035 1.395045 CCCAGCTGCAGGTCGAGATA 61.395 60.000 17.16 0.00 0.00 1.98
2820 3036 2.729479 CCCAGCTGCAGGTCGAGAT 61.729 63.158 17.16 0.00 0.00 2.75
2978 3194 7.378966 TCACAAAACACAACATTTGAACCTAA 58.621 30.769 5.35 0.00 38.50 2.69
3249 3502 2.003658 AACACGGTGCCAAACTGCAG 62.004 55.000 13.48 13.48 43.02 4.41
3532 3794 0.951558 ACTGCACCACCGACATTTTC 59.048 50.000 0.00 0.00 0.00 2.29
3699 3967 6.192137 CGTCAACGTTAAAAACTGAACTTCTG 59.808 38.462 0.00 0.00 34.11 3.02
3905 4174 6.428083 TCTTATAAACACTGAACCACTCCA 57.572 37.500 0.00 0.00 0.00 3.86
3910 4179 7.013846 CCAGGTTTTCTTATAAACACTGAACCA 59.986 37.037 14.01 0.00 39.27 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.