Multiple sequence alignment - TraesCS6A01G309300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G309300 chr6A 100.000 4569 0 0 1 4569 545120952 545125520 0.000000e+00 8438.0
1 TraesCS6A01G309300 chr6A 100.000 2663 0 0 4720 7382 545125671 545128333 0.000000e+00 4918.0
2 TraesCS6A01G309300 chr6A 88.085 235 23 2 3324 3553 536983033 536983267 2.620000e-69 274.0
3 TraesCS6A01G309300 chr6B 92.599 2270 117 24 4731 6986 597293710 597295942 0.000000e+00 3214.0
4 TraesCS6A01G309300 chr6B 94.608 1762 67 14 2773 4508 597291623 597293382 0.000000e+00 2702.0
5 TraesCS6A01G309300 chr6B 86.845 2060 117 72 403 2396 597289259 597291230 0.000000e+00 2161.0
6 TraesCS6A01G309300 chr6B 88.517 418 30 9 6983 7382 597296106 597296523 2.390000e-134 490.0
7 TraesCS6A01G309300 chr6B 83.673 441 33 16 16 454 597288861 597289264 5.410000e-101 379.0
8 TraesCS6A01G309300 chr6B 89.575 259 22 5 3756 4011 539535651 539535907 2.570000e-84 324.0
9 TraesCS6A01G309300 chr6B 89.634 164 17 0 2487 2650 581936672 581936509 7.510000e-50 209.0
10 TraesCS6A01G309300 chr6B 87.850 107 10 2 4078 4184 539535925 539536028 1.010000e-23 122.0
11 TraesCS6A01G309300 chr6D 95.570 1580 57 6 2978 4545 399031546 399033124 0.000000e+00 2518.0
12 TraesCS6A01G309300 chr6D 85.592 2575 165 84 16 2486 399028917 399031389 0.000000e+00 2510.0
13 TraesCS6A01G309300 chr6D 92.825 1561 75 23 5853 7382 399034572 399036126 0.000000e+00 2228.0
14 TraesCS6A01G309300 chr6D 96.061 1041 38 2 4773 5813 399033524 399034561 0.000000e+00 1692.0
15 TraesCS6A01G309300 chr6D 87.602 492 52 8 3641 4129 466386539 466386054 5.000000e-156 562.0
16 TraesCS6A01G309300 chr6D 86.747 166 20 2 2485 2650 386274228 386274065 4.550000e-42 183.0
17 TraesCS6A01G309300 chr6D 88.710 62 4 3 2798 2858 6756525 6756466 1.030000e-08 73.1
18 TraesCS6A01G309300 chr1B 88.115 488 53 5 3527 4011 335546570 335547055 6.420000e-160 575.0
19 TraesCS6A01G309300 chr1B 90.968 155 13 1 2632 2786 30648845 30648998 2.700000e-49 207.0
20 TraesCS6A01G309300 chr1B 90.968 155 13 1 2632 2786 30660259 30660412 2.700000e-49 207.0
21 TraesCS6A01G309300 chr1B 87.975 158 18 1 4389 4546 540845343 540845499 1.260000e-42 185.0
22 TraesCS6A01G309300 chr1B 87.850 107 9 3 4078 4184 335547073 335547175 1.010000e-23 122.0
23 TraesCS6A01G309300 chr1B 79.528 127 11 11 7236 7357 8841879 8841763 7.940000e-10 76.8
24 TraesCS6A01G309300 chr3B 81.399 715 86 27 2976 3682 293694064 293693389 2.340000e-149 540.0
25 TraesCS6A01G309300 chr3B 88.571 175 17 3 4366 4539 500525143 500524971 7.510000e-50 209.0
26 TraesCS6A01G309300 chr3B 88.344 163 18 1 4389 4551 804589306 804589467 2.100000e-45 195.0
27 TraesCS6A01G309300 chr4B 81.127 710 89 22 2976 3682 342753800 342753133 1.820000e-145 527.0
28 TraesCS6A01G309300 chr5A 89.011 364 34 3 3324 3682 259088559 259088921 5.250000e-121 446.0
29 TraesCS6A01G309300 chr5A 85.965 171 21 3 4389 4557 365703376 365703207 5.880000e-41 180.0
30 TraesCS6A01G309300 chr2B 87.395 357 39 6 3324 3676 678365823 678366177 8.920000e-109 405.0
31 TraesCS6A01G309300 chr2B 82.036 334 46 8 2976 3307 678365513 678365834 9.440000e-69 272.0
32 TraesCS6A01G309300 chr2B 87.574 169 16 4 2485 2650 671240559 671240393 2.720000e-44 191.0
33 TraesCS6A01G309300 chr5D 96.350 137 4 1 2639 2775 558898549 558898414 2.680000e-54 224.0
34 TraesCS6A01G309300 chr5D 95.588 136 6 0 2645 2780 241844074 241844209 1.250000e-52 219.0
35 TraesCS6A01G309300 chr5D 88.415 164 17 2 2488 2650 565676638 565676800 5.840000e-46 196.0
36 TraesCS6A01G309300 chr7A 96.970 132 3 1 2649 2780 439786389 439786519 3.470000e-53 220.0
37 TraesCS6A01G309300 chr7A 87.342 158 19 1 4389 4546 664001452 664001608 5.880000e-41 180.0
38 TraesCS6A01G309300 chr5B 94.444 144 6 1 2634 2775 15561183 15561326 3.470000e-53 220.0
39 TraesCS6A01G309300 chr5B 93.662 142 7 1 2644 2785 577304125 577303986 2.090000e-50 211.0
40 TraesCS6A01G309300 chr5B 75.104 482 87 22 5922 6378 357552419 357552892 2.100000e-45 195.0
41 TraesCS6A01G309300 chr5B 87.195 164 19 2 2488 2650 707454119 707453957 1.260000e-42 185.0
42 TraesCS6A01G309300 chr5B 83.562 73 8 4 2742 2811 191030523 191030452 1.720000e-06 65.8
43 TraesCS6A01G309300 chr7B 96.241 133 4 1 2649 2781 680907439 680907570 4.490000e-52 217.0
44 TraesCS6A01G309300 chr7B 79.487 312 53 5 3666 3968 681741114 681741423 2.090000e-50 211.0
45 TraesCS6A01G309300 chr7B 85.714 168 21 2 2484 2650 116121528 116121693 2.740000e-39 174.0
46 TraesCS6A01G309300 chr1D 90.419 167 13 3 2485 2650 434612374 434612210 4.490000e-52 217.0
47 TraesCS6A01G309300 chr3D 87.302 189 18 3 4373 4561 255457641 255457459 2.090000e-50 211.0
48 TraesCS6A01G309300 chr4A 92.361 144 8 3 2647 2789 448542230 448542371 1.260000e-47 202.0
49 TraesCS6A01G309300 chr3A 87.952 166 16 1 2485 2650 741656512 741656673 7.560000e-45 193.0
50 TraesCS6A01G309300 chr3A 85.380 171 22 3 4389 4557 636843195 636843026 2.740000e-39 174.0
51 TraesCS6A01G309300 chr3A 91.509 106 8 1 3631 3736 44580124 44580228 2.150000e-30 145.0
52 TraesCS6A01G309300 chr7D 85.976 164 23 0 2485 2648 503512325 503512488 7.610000e-40 176.0
53 TraesCS6A01G309300 chr1A 87.179 78 9 1 2773 2850 430619298 430619222 3.670000e-13 87.9
54 TraesCS6A01G309300 chr1A 83.544 79 10 3 7276 7353 341025038 341025114 3.700000e-08 71.3
55 TraesCS6A01G309300 chr1A 89.286 56 5 1 7301 7356 580189815 580189869 1.330000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G309300 chr6A 545120952 545128333 7381 False 6678.0 8438 100.0000 1 7382 2 chr6A.!!$F2 7381
1 TraesCS6A01G309300 chr6B 597288861 597296523 7662 False 1789.2 3214 89.2484 16 7382 5 chr6B.!!$F2 7366
2 TraesCS6A01G309300 chr6D 399028917 399036126 7209 False 2237.0 2518 92.5120 16 7382 4 chr6D.!!$F1 7366
3 TraesCS6A01G309300 chr1B 335546570 335547175 605 False 348.5 575 87.9825 3527 4184 2 chr1B.!!$F4 657
4 TraesCS6A01G309300 chr3B 293693389 293694064 675 True 540.0 540 81.3990 2976 3682 1 chr3B.!!$R1 706
5 TraesCS6A01G309300 chr4B 342753133 342753800 667 True 527.0 527 81.1270 2976 3682 1 chr4B.!!$R1 706
6 TraesCS6A01G309300 chr2B 678365513 678366177 664 False 338.5 405 84.7155 2976 3676 2 chr2B.!!$F1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
397 428 0.179012 TCCCAACGGAGAAACCAACC 60.179 55.000 0.0 0.0 38.90 3.77 F
1529 1707 0.106918 GGTGCCCCGTTGAATATCCA 60.107 55.000 0.0 0.0 0.00 3.41 F
1690 1875 0.095935 CGCCTTTGATGCTCAAGTCG 59.904 55.000 0.0 0.0 37.70 4.18 F
2050 2238 1.197721 CCCATCGTTGTCACTTTCAGC 59.802 52.381 0.0 0.0 0.00 4.26 F
3415 3834 0.038166 TGGCTGGAATCAACACCCTC 59.962 55.000 0.0 0.0 0.00 4.30 F
4371 4805 0.252057 GGTGCCCCCTGGTATTGTTT 60.252 55.000 0.0 0.0 0.00 2.83 F
4561 4995 0.108585 TGTTGCTCTGGTGGAGGTTC 59.891 55.000 0.0 0.0 42.08 3.62 F
5862 6472 0.458543 CCACGACACTTGGATCGGAG 60.459 60.000 0.0 0.0 42.67 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 1872 0.729816 GAACCAGTCTGCGACTCGAC 60.730 60.000 1.63 0.00 41.37 4.20 R
2645 3013 0.178926 TTGGGACGGAGGGAGTACAA 60.179 55.000 0.00 0.00 0.00 2.41 R
2647 3015 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73 R
3513 3933 1.414550 TGTGTGGATCAGGTTCGTTCA 59.585 47.619 0.00 0.00 0.00 3.18 R
4546 4980 1.079750 GTCGAACCTCCACCAGAGC 60.080 63.158 0.00 0.00 41.74 4.09 R
6117 6727 0.673985 TCAGTGTCCGTTCACAGAGG 59.326 55.000 9.28 0.00 40.37 3.69 R
6120 6730 0.939577 CGGTCAGTGTCCGTTCACAG 60.940 60.000 19.05 2.58 42.62 3.66 R
6820 7435 0.687920 TGTCCTACCGCAATTCCACA 59.312 50.000 0.00 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.612732 TCCTGTAGGGTGGTGGTACG 60.613 60.000 0.00 0.00 36.25 3.67
53 54 1.610554 CCTGTAGGGTGGTGGTACGG 61.611 65.000 0.00 0.00 0.00 4.02
54 55 0.901580 CTGTAGGGTGGTGGTACGGT 60.902 60.000 0.00 0.00 0.00 4.83
55 56 0.407528 TGTAGGGTGGTGGTACGGTA 59.592 55.000 0.00 0.00 0.00 4.02
56 57 0.817654 GTAGGGTGGTGGTACGGTAC 59.182 60.000 9.82 9.82 0.00 3.34
67 72 0.301987 GTACGGTACCGCTAGTCGTC 59.698 60.000 33.62 11.28 44.19 4.20
131 138 2.742372 CACGGCTTTCACCCTCCG 60.742 66.667 0.00 0.00 46.61 4.63
141 148 0.473117 TCACCCTCCGTTTTCCCTCT 60.473 55.000 0.00 0.00 0.00 3.69
172 179 1.512156 GGTAAACCACTGTGGCGGTG 61.512 60.000 26.20 3.05 42.67 4.94
186 193 4.162690 GGTGGGACTAGCAGGGCG 62.163 72.222 0.00 0.00 0.00 6.13
187 194 4.162690 GTGGGACTAGCAGGGCGG 62.163 72.222 0.00 0.00 0.00 6.13
210 217 4.821589 GCACGGCGGAGGGAGAAG 62.822 72.222 13.24 0.00 0.00 2.85
337 364 8.384693 TCCCAACGGAGTAGTATCTATCTATA 57.615 38.462 0.00 0.00 45.00 1.31
338 365 8.263640 TCCCAACGGAGTAGTATCTATCTATAC 58.736 40.741 0.00 0.00 45.00 1.47
359 386 7.982761 ATACACCGTAAACTCCAAAAATACA 57.017 32.000 0.00 0.00 0.00 2.29
364 391 4.378666 CGTAAACTCCAAAAATACACCCGG 60.379 45.833 0.00 0.00 0.00 5.73
371 398 3.553302 CCAAAAATACACCCGGTTTCACC 60.553 47.826 0.00 0.00 34.05 4.02
396 427 3.407443 TCCCAACGGAGAAACCAAC 57.593 52.632 0.00 0.00 38.90 3.77
397 428 0.179012 TCCCAACGGAGAAACCAACC 60.179 55.000 0.00 0.00 38.90 3.77
398 429 0.466555 CCCAACGGAGAAACCAACCA 60.467 55.000 0.00 0.00 38.90 3.67
414 445 2.816958 CACGCAGAAGCATCGCCT 60.817 61.111 0.00 0.00 42.27 5.52
443 474 3.515286 CGCGCCGAGTAGGAGGAA 61.515 66.667 0.00 0.00 45.00 3.36
623 717 0.251077 AACCAAAGGCAGAGCAGAGG 60.251 55.000 0.00 0.00 0.00 3.69
685 796 3.699894 ACCTCCCTCTGCACTGCG 61.700 66.667 0.00 0.00 0.00 5.18
731 849 3.764466 CTTCTGCGCTCCCCGTCT 61.764 66.667 9.73 0.00 39.71 4.18
732 850 2.361992 TTCTGCGCTCCCCGTCTA 60.362 61.111 9.73 0.00 39.71 2.59
733 851 2.615262 CTTCTGCGCTCCCCGTCTAC 62.615 65.000 9.73 0.00 39.71 2.59
734 852 4.208686 CTGCGCTCCCCGTCTACC 62.209 72.222 9.73 0.00 39.71 3.18
739 857 4.835891 CTCCCCGTCTACCCCGCT 62.836 72.222 0.00 0.00 0.00 5.52
740 858 3.419580 TCCCCGTCTACCCCGCTA 61.420 66.667 0.00 0.00 0.00 4.26
744 862 3.207669 CGTCTACCCCGCTACGCT 61.208 66.667 0.00 0.00 0.00 5.07
765 883 4.947147 GACCCACCACCAGCGCAA 62.947 66.667 11.47 0.00 0.00 4.85
766 884 4.954970 ACCCACCACCAGCGCAAG 62.955 66.667 11.47 1.76 43.44 4.01
797 933 4.208686 CGGTAGCGTCCTGGGAGC 62.209 72.222 6.07 6.26 0.00 4.70
826 972 1.301401 CCATACCATACCGCCACCG 60.301 63.158 0.00 0.00 0.00 4.94
871 1017 3.330720 CACTCCCCCACTCCCCAC 61.331 72.222 0.00 0.00 0.00 4.61
872 1018 3.542602 ACTCCCCCACTCCCCACT 61.543 66.667 0.00 0.00 0.00 4.00
873 1019 3.011517 CTCCCCCACTCCCCACTG 61.012 72.222 0.00 0.00 0.00 3.66
886 1032 4.778143 CACTGCCCCGCTACCACC 62.778 72.222 0.00 0.00 0.00 4.61
932 1086 1.990060 TTTGAGCGAGGGAGGGAGG 60.990 63.158 0.00 0.00 0.00 4.30
933 1087 3.984186 TTGAGCGAGGGAGGGAGGG 62.984 68.421 0.00 0.00 0.00 4.30
952 1106 2.197324 CTCGGGAGGAGGAGGAGG 59.803 72.222 0.00 0.00 39.22 4.30
953 1107 2.286962 TCGGGAGGAGGAGGAGGA 60.287 66.667 0.00 0.00 0.00 3.71
955 1109 2.123033 GGGAGGAGGAGGAGGAGC 60.123 72.222 0.00 0.00 0.00 4.70
1054 1211 2.659610 GGCAGAAGCAGGACGACT 59.340 61.111 0.00 0.00 44.61 4.18
1083 1240 2.750350 CCCGTCAAGGACCAGCTT 59.250 61.111 0.00 0.00 45.00 3.74
1101 1258 1.807771 TTCCCGGGGTCTCCTACTGT 61.808 60.000 23.50 0.00 0.00 3.55
1152 1309 3.157949 CGCTCCCTCCCTTCCTCC 61.158 72.222 0.00 0.00 0.00 4.30
1156 1317 3.083997 CCCTCCCTTCCTCCCACG 61.084 72.222 0.00 0.00 0.00 4.94
1448 1626 1.064611 TCCCGGCGGATATTCCAAAAA 60.065 47.619 30.79 0.00 35.91 1.94
1459 1637 7.491048 GCGGATATTCCAAAAATAAAAAGCAGA 59.509 33.333 0.00 0.00 35.91 4.26
1529 1707 0.106918 GGTGCCCCGTTGAATATCCA 60.107 55.000 0.00 0.00 0.00 3.41
1531 1709 0.916086 TGCCCCGTTGAATATCCACT 59.084 50.000 0.00 0.00 0.00 4.00
1532 1710 1.308998 GCCCCGTTGAATATCCACTG 58.691 55.000 0.00 0.00 0.00 3.66
1533 1711 1.308998 CCCCGTTGAATATCCACTGC 58.691 55.000 0.00 0.00 0.00 4.40
1534 1712 1.134098 CCCCGTTGAATATCCACTGCT 60.134 52.381 0.00 0.00 0.00 4.24
1591 1776 2.244436 CTTTGACCCGTGCTGATGCG 62.244 60.000 0.00 0.00 43.34 4.73
1610 1795 1.057285 CGCGTACTCGACATTCAACAC 59.943 52.381 0.00 0.00 39.71 3.32
1633 1818 4.325204 CACAAGGAATTTGCATGATTGTCG 59.675 41.667 0.00 0.00 40.59 4.35
1641 1826 1.174712 GCATGATTGTCGGATGGGGG 61.175 60.000 0.00 0.00 0.00 5.40
1642 1827 1.151450 ATGATTGTCGGATGGGGGC 59.849 57.895 0.00 0.00 0.00 5.80
1645 1830 0.819666 GATTGTCGGATGGGGGCTTC 60.820 60.000 0.00 0.00 0.00 3.86
1657 1842 1.032794 GGGGCTTCGGATGGATTTTC 58.967 55.000 0.00 0.00 0.00 2.29
1661 1846 2.369394 GCTTCGGATGGATTTTCTGGT 58.631 47.619 0.00 0.00 0.00 4.00
1686 1871 2.192664 TTACCGCCTTTGATGCTCAA 57.807 45.000 0.00 0.00 34.03 3.02
1687 1872 1.737838 TACCGCCTTTGATGCTCAAG 58.262 50.000 0.00 0.00 37.70 3.02
1688 1873 0.250901 ACCGCCTTTGATGCTCAAGT 60.251 50.000 0.00 0.00 37.70 3.16
1689 1874 0.449388 CCGCCTTTGATGCTCAAGTC 59.551 55.000 0.00 0.00 37.70 3.01
1690 1875 0.095935 CGCCTTTGATGCTCAAGTCG 59.904 55.000 0.00 0.00 37.70 4.18
1717 1903 1.620819 AGACTGGTTCTGAATCTGCGT 59.379 47.619 7.37 0.00 31.12 5.24
1757 1944 1.852942 GACTTGAGTCAGCGTCAACA 58.147 50.000 15.71 0.00 44.18 3.33
1758 1945 2.408050 GACTTGAGTCAGCGTCAACAT 58.592 47.619 15.71 0.00 44.18 2.71
1761 1948 2.749280 TGAGTCAGCGTCAACATGAT 57.251 45.000 0.00 0.00 0.00 2.45
1790 1977 5.721232 ACTTCGATTCTTACGAGTTTCCAT 58.279 37.500 0.00 0.00 40.72 3.41
1820 2007 5.577835 TGGTGCTATATTTGCGATTTTGTC 58.422 37.500 0.00 0.00 0.00 3.18
1840 2028 9.504708 TTTTGTCGGTAGTAATTAATCTTTGGA 57.495 29.630 0.00 0.00 0.00 3.53
1845 2033 9.321562 TCGGTAGTAATTAATCTTTGGATTCAC 57.678 33.333 0.00 0.00 41.75 3.18
1914 2102 7.119360 GGGCGTTCGTTTTTGTTACTATATAC 58.881 38.462 0.00 0.00 0.00 1.47
1987 2175 1.524393 TGCATGCATCCTAGGCACG 60.524 57.895 18.46 0.00 45.23 5.34
2050 2238 1.197721 CCCATCGTTGTCACTTTCAGC 59.802 52.381 0.00 0.00 0.00 4.26
2051 2239 1.872952 CCATCGTTGTCACTTTCAGCA 59.127 47.619 0.00 0.00 0.00 4.41
2052 2240 2.349817 CCATCGTTGTCACTTTCAGCAC 60.350 50.000 0.00 0.00 0.00 4.40
2066 2254 2.799017 TCAGCACCTGCATTGATTCTT 58.201 42.857 0.00 0.00 45.16 2.52
2102 2296 3.384789 GGGGCATTTCCATTTTCTACCTC 59.615 47.826 0.00 0.00 36.21 3.85
2112 2306 6.103997 TCCATTTTCTACCTCGTGTGTTATC 58.896 40.000 0.00 0.00 0.00 1.75
2113 2307 5.872617 CCATTTTCTACCTCGTGTGTTATCA 59.127 40.000 0.00 0.00 0.00 2.15
2296 2491 2.737252 GTCTGAACCGAGTCAAATCCAC 59.263 50.000 0.00 0.00 0.00 4.02
2297 2492 2.367241 TCTGAACCGAGTCAAATCCACA 59.633 45.455 0.00 0.00 0.00 4.17
2334 2529 9.725019 TGACACTGTAAATAAAGAGAATCACAT 57.275 29.630 0.00 0.00 37.82 3.21
2396 2593 4.717280 CCCTTCCTAACCTGAGTTCTGTAT 59.283 45.833 0.00 0.00 37.42 2.29
2405 2602 1.833630 TGAGTTCTGTATGCAGGAGGG 59.166 52.381 11.15 0.00 42.78 4.30
2463 2831 9.202273 CTTCCTATCTTGAATTACTGCTCATAC 57.798 37.037 0.00 0.00 0.00 2.39
2475 2843 1.751351 TGCTCATACCTCCTGAGTTCG 59.249 52.381 2.63 0.00 41.77 3.95
2486 2854 4.416620 CTCCTGAGTTCGAAGACACATAC 58.583 47.826 0.00 0.00 34.32 2.39
2487 2855 4.079970 TCCTGAGTTCGAAGACACATACT 58.920 43.478 0.00 0.00 34.32 2.12
2488 2856 4.156190 TCCTGAGTTCGAAGACACATACTC 59.844 45.833 0.00 0.00 34.32 2.59
2489 2857 4.416620 CTGAGTTCGAAGACACATACTCC 58.583 47.826 0.00 0.00 34.32 3.85
2490 2858 3.192844 TGAGTTCGAAGACACATACTCCC 59.807 47.826 0.00 0.00 34.32 4.30
2491 2859 3.432378 AGTTCGAAGACACATACTCCCT 58.568 45.455 0.00 0.00 34.32 4.20
2492 2860 3.444388 AGTTCGAAGACACATACTCCCTC 59.556 47.826 0.00 0.00 34.32 4.30
2493 2861 3.367646 TCGAAGACACATACTCCCTCT 57.632 47.619 0.00 0.00 0.00 3.69
2494 2862 3.017442 TCGAAGACACATACTCCCTCTG 58.983 50.000 0.00 0.00 0.00 3.35
2495 2863 2.755655 CGAAGACACATACTCCCTCTGT 59.244 50.000 0.00 0.00 0.00 3.41
2496 2864 3.193691 CGAAGACACATACTCCCTCTGTT 59.806 47.826 0.00 0.00 0.00 3.16
2497 2865 4.675671 CGAAGACACATACTCCCTCTGTTC 60.676 50.000 0.00 0.00 0.00 3.18
2498 2866 3.100671 AGACACATACTCCCTCTGTTCC 58.899 50.000 0.00 0.00 0.00 3.62
2499 2867 2.832129 GACACATACTCCCTCTGTTCCA 59.168 50.000 0.00 0.00 0.00 3.53
2500 2868 3.452627 GACACATACTCCCTCTGTTCCAT 59.547 47.826 0.00 0.00 0.00 3.41
2501 2869 4.620723 ACACATACTCCCTCTGTTCCATA 58.379 43.478 0.00 0.00 0.00 2.74
2502 2870 5.030147 ACACATACTCCCTCTGTTCCATAA 58.970 41.667 0.00 0.00 0.00 1.90
2503 2871 5.104900 ACACATACTCCCTCTGTTCCATAAC 60.105 44.000 0.00 0.00 36.07 1.89
2504 2872 4.099573 ACATACTCCCTCTGTTCCATAACG 59.900 45.833 0.00 0.00 38.53 3.18
2518 2886 7.718525 TGTTCCATAACGTAGTGCATATAGAA 58.281 34.615 0.00 0.00 45.00 2.10
2539 2907 6.376978 AGAATTTTTGAGAAGTCAAGCATCG 58.623 36.000 0.00 0.00 43.66 3.84
2552 2920 1.317613 AGCATCGCAAACTTTGACCA 58.682 45.000 5.65 0.00 0.00 4.02
2553 2921 1.680735 AGCATCGCAAACTTTGACCAA 59.319 42.857 5.65 0.00 0.00 3.67
2564 2932 5.930837 AACTTTGACCAAATTTGTGGAGA 57.069 34.783 16.73 0.00 41.65 3.71
2566 2934 6.293004 ACTTTGACCAAATTTGTGGAGAAA 57.707 33.333 16.73 7.14 41.65 2.52
2574 2942 7.984391 ACCAAATTTGTGGAGAAAAACATTTC 58.016 30.769 16.73 0.00 41.65 2.17
2587 2955 8.358582 AGAAAAACATTTCCATCTAGAATGCT 57.641 30.769 0.00 0.00 34.86 3.79
2659 3027 4.895668 TTTTGTATTGTACTCCCTCCGT 57.104 40.909 0.00 0.00 0.00 4.69
2660 3028 4.460948 TTTGTATTGTACTCCCTCCGTC 57.539 45.455 0.00 0.00 0.00 4.79
2661 3029 2.381911 TGTATTGTACTCCCTCCGTCC 58.618 52.381 0.00 0.00 0.00 4.79
2662 3030 1.685517 GTATTGTACTCCCTCCGTCCC 59.314 57.143 0.00 0.00 0.00 4.46
2663 3031 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
2664 3032 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
2665 3033 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2666 3034 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2667 3035 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2668 3036 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2669 3037 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2670 3038 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2671 3039 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2672 3040 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2673 3041 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2674 3042 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2675 3043 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2676 3044 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2677 3045 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2678 3046 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2679 3047 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2680 3048 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2681 3049 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2682 3050 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2683 3051 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2684 3052 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2685 3053 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2686 3054 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
2694 3062 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
2695 3063 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
2697 3065 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
2698 3066 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
2717 3085 9.745880 ACGGATGTATCTAGTTACATTTTAGTG 57.254 33.333 21.77 13.11 41.67 2.74
2718 3086 9.745880 CGGATGTATCTAGTTACATTTTAGTGT 57.254 33.333 21.77 4.20 41.67 3.55
2729 3097 8.893727 AGTTACATTTTAGTGTTAGATGCATCC 58.106 33.333 23.06 8.72 33.62 3.51
2730 3098 6.363577 ACATTTTAGTGTTAGATGCATCCG 57.636 37.500 23.06 0.00 0.00 4.18
2731 3099 5.880332 ACATTTTAGTGTTAGATGCATCCGT 59.120 36.000 23.06 8.39 0.00 4.69
2732 3100 7.045416 ACATTTTAGTGTTAGATGCATCCGTA 58.955 34.615 23.06 7.32 0.00 4.02
2733 3101 7.715249 ACATTTTAGTGTTAGATGCATCCGTAT 59.285 33.333 23.06 7.24 0.00 3.06
2734 3102 7.709269 TTTTAGTGTTAGATGCATCCGTATC 57.291 36.000 23.06 11.17 34.68 2.24
2735 3103 6.650427 TTAGTGTTAGATGCATCCGTATCT 57.350 37.500 23.06 17.09 45.39 1.98
2736 3104 7.754851 TTAGTGTTAGATGCATCCGTATCTA 57.245 36.000 23.06 16.18 42.15 1.98
2737 3105 6.260870 AGTGTTAGATGCATCCGTATCTAG 57.739 41.667 23.06 0.00 44.49 2.43
2738 3106 6.004574 AGTGTTAGATGCATCCGTATCTAGA 58.995 40.000 23.06 0.00 44.49 2.43
2739 3107 6.072397 AGTGTTAGATGCATCCGTATCTAGAC 60.072 42.308 23.06 8.90 44.49 2.59
2740 3108 5.768164 TGTTAGATGCATCCGTATCTAGACA 59.232 40.000 23.06 11.68 44.49 3.41
2741 3109 6.264518 TGTTAGATGCATCCGTATCTAGACAA 59.735 38.462 23.06 0.00 44.49 3.18
2742 3110 5.791336 AGATGCATCCGTATCTAGACAAA 57.209 39.130 23.06 0.00 42.15 2.83
2743 3111 6.352016 AGATGCATCCGTATCTAGACAAAT 57.648 37.500 23.06 0.00 42.15 2.32
2744 3112 6.162079 AGATGCATCCGTATCTAGACAAATG 58.838 40.000 23.06 0.00 42.15 2.32
2745 3113 5.276461 TGCATCCGTATCTAGACAAATGT 57.724 39.130 0.00 0.00 0.00 2.71
2746 3114 6.399639 TGCATCCGTATCTAGACAAATGTA 57.600 37.500 0.00 0.00 0.00 2.29
2747 3115 6.811954 TGCATCCGTATCTAGACAAATGTAA 58.188 36.000 0.00 0.00 0.00 2.41
2748 3116 6.923508 TGCATCCGTATCTAGACAAATGTAAG 59.076 38.462 0.00 0.00 0.00 2.34
2749 3117 7.145985 GCATCCGTATCTAGACAAATGTAAGA 58.854 38.462 0.00 1.82 0.00 2.10
2750 3118 7.115095 GCATCCGTATCTAGACAAATGTAAGAC 59.885 40.741 0.00 0.00 0.00 3.01
2751 3119 7.634671 TCCGTATCTAGACAAATGTAAGACA 57.365 36.000 0.00 0.00 0.00 3.41
2752 3120 8.058667 TCCGTATCTAGACAAATGTAAGACAA 57.941 34.615 0.00 0.00 0.00 3.18
2753 3121 8.188799 TCCGTATCTAGACAAATGTAAGACAAG 58.811 37.037 0.00 0.00 0.00 3.16
2754 3122 8.188799 CCGTATCTAGACAAATGTAAGACAAGA 58.811 37.037 0.00 0.00 0.00 3.02
2755 3123 9.569167 CGTATCTAGACAAATGTAAGACAAGAA 57.431 33.333 0.00 0.00 0.00 2.52
2762 3130 9.956720 AGACAAATGTAAGACAAGAATTTTGAG 57.043 29.630 8.74 0.00 31.32 3.02
2763 3131 9.950680 GACAAATGTAAGACAAGAATTTTGAGA 57.049 29.630 8.74 0.00 31.32 3.27
2764 3132 9.736023 ACAAATGTAAGACAAGAATTTTGAGAC 57.264 29.630 8.74 0.00 31.32 3.36
2765 3133 8.895845 CAAATGTAAGACAAGAATTTTGAGACG 58.104 33.333 7.18 0.00 29.37 4.18
2766 3134 6.539649 TGTAAGACAAGAATTTTGAGACGG 57.460 37.500 7.18 0.00 0.00 4.79
2767 3135 6.285224 TGTAAGACAAGAATTTTGAGACGGA 58.715 36.000 7.18 0.00 0.00 4.69
2768 3136 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
2769 3137 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
2770 3138 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
2771 3139 3.072476 ACAAGAATTTTGAGACGGAGGGA 59.928 43.478 7.18 0.00 0.00 4.20
2789 3157 7.611079 ACGGAGGGAGTAGATATGAATAGTTAC 59.389 40.741 0.00 0.00 0.00 2.50
2850 3219 9.944376 AAATCTACACGCACTATATTATGGAAT 57.056 29.630 0.00 0.00 0.00 3.01
2872 3241 3.587061 TGGAGTGATGTTTACATGGGAGT 59.413 43.478 0.00 0.00 36.57 3.85
2913 3282 3.444742 TCTGCATGGACAAATGATGAACC 59.555 43.478 0.00 0.00 0.00 3.62
2983 3388 7.658179 TCGGCAATTATATTTTTGTTTTGCA 57.342 28.000 7.00 0.00 39.66 4.08
3049 3456 9.727627 CTATAGAAAGCAGGAAAATTTTGCTAG 57.272 33.333 22.53 17.33 46.72 3.42
3296 3705 3.209410 AGTTCTGTTGCTTTGGACTGAG 58.791 45.455 0.00 0.00 0.00 3.35
3307 3716 4.310769 CTTTGGACTGAGTCTGTCGATTT 58.689 43.478 20.07 0.00 33.99 2.17
3415 3834 0.038166 TGGCTGGAATCAACACCCTC 59.962 55.000 0.00 0.00 0.00 4.30
3513 3933 2.430694 TCATACTTGCAGGACGCTACAT 59.569 45.455 1.40 0.00 43.06 2.29
3617 4045 4.042062 ACTGATGAGTCACCTGGATTTTGA 59.958 41.667 0.00 0.00 0.00 2.69
3622 4050 7.669304 TGATGAGTCACCTGGATTTTGATTTTA 59.331 33.333 0.00 0.00 0.00 1.52
3792 4220 0.468226 TGTTTCAGAGGCACCGAAGT 59.532 50.000 0.00 0.00 0.00 3.01
3825 4256 7.775093 TGTTCTAGCAGGAATAGCATGTTTAAT 59.225 33.333 0.00 0.00 0.00 1.40
3948 4380 5.395324 GGTTTTCCATCGGTAAGATCTGAGA 60.395 44.000 0.00 0.00 37.52 3.27
4075 4507 5.765510 TCCTGGTGATATTTGCTATGGTTT 58.234 37.500 0.00 0.00 0.00 3.27
4135 4567 2.348411 ACCCAGCATAACTATGTGCC 57.652 50.000 0.00 0.00 44.04 5.01
4160 4592 2.028130 CTGCATTTTTACGCCCCCATA 58.972 47.619 0.00 0.00 0.00 2.74
4300 4734 2.912956 TGGAGGAGCTTACAGGAATGTT 59.087 45.455 0.00 0.00 0.00 2.71
4336 4770 4.465512 CATTGCCGCACTGACCGC 62.466 66.667 4.76 0.00 0.00 5.68
4371 4805 0.252057 GGTGCCCCCTGGTATTGTTT 60.252 55.000 0.00 0.00 0.00 2.83
4408 4842 1.068895 TGCTTGTTCCATTTGCACCAG 59.931 47.619 0.00 0.00 0.00 4.00
4414 4848 1.375013 CCATTTGCACCAGCCTTGC 60.375 57.895 0.00 0.00 41.13 4.01
4420 4854 2.924105 GCACCAGCCTTGCCTGTTC 61.924 63.158 0.00 0.00 33.58 3.18
4545 4979 3.431626 CCATGATGGCTGCATCATTTGTT 60.432 43.478 18.49 3.43 46.68 2.83
4546 4980 3.239587 TGATGGCTGCATCATTTGTTG 57.760 42.857 0.50 0.00 36.74 3.33
4547 4981 1.931172 GATGGCTGCATCATTTGTTGC 59.069 47.619 0.50 6.65 40.24 4.17
4548 4982 0.970640 TGGCTGCATCATTTGTTGCT 59.029 45.000 13.16 0.00 40.41 3.91
4549 4983 1.067425 TGGCTGCATCATTTGTTGCTC 60.067 47.619 13.16 6.55 40.41 4.26
4550 4984 1.203994 GGCTGCATCATTTGTTGCTCT 59.796 47.619 13.16 0.00 40.41 4.09
4551 4985 2.259618 GCTGCATCATTTGTTGCTCTG 58.740 47.619 13.16 6.41 40.41 3.35
4552 4986 2.876091 CTGCATCATTTGTTGCTCTGG 58.124 47.619 13.16 0.91 40.41 3.86
4553 4987 2.230508 CTGCATCATTTGTTGCTCTGGT 59.769 45.455 13.16 0.00 40.41 4.00
4554 4988 2.029739 TGCATCATTTGTTGCTCTGGTG 60.030 45.455 13.16 0.00 40.41 4.17
4555 4989 2.673043 GCATCATTTGTTGCTCTGGTGG 60.673 50.000 6.40 0.00 37.66 4.61
4556 4990 2.655090 TCATTTGTTGCTCTGGTGGA 57.345 45.000 0.00 0.00 0.00 4.02
4557 4991 2.507484 TCATTTGTTGCTCTGGTGGAG 58.493 47.619 0.00 0.00 44.49 3.86
4558 4992 1.542915 CATTTGTTGCTCTGGTGGAGG 59.457 52.381 0.00 0.00 42.08 4.30
4559 4993 0.550914 TTTGTTGCTCTGGTGGAGGT 59.449 50.000 0.00 0.00 42.08 3.85
4560 4994 0.550914 TTGTTGCTCTGGTGGAGGTT 59.449 50.000 0.00 0.00 42.08 3.50
4561 4995 0.108585 TGTTGCTCTGGTGGAGGTTC 59.891 55.000 0.00 0.00 42.08 3.62
4562 4996 0.951040 GTTGCTCTGGTGGAGGTTCG 60.951 60.000 0.00 0.00 42.08 3.95
4563 4997 1.118965 TTGCTCTGGTGGAGGTTCGA 61.119 55.000 0.00 0.00 42.08 3.71
4564 4998 1.079750 GCTCTGGTGGAGGTTCGAC 60.080 63.158 0.00 0.00 42.08 4.20
4565 4999 1.592223 CTCTGGTGGAGGTTCGACC 59.408 63.158 3.61 3.61 44.35 4.79
4566 5000 1.889530 CTCTGGTGGAGGTTCGACCC 61.890 65.000 7.63 0.00 43.59 4.46
4567 5001 2.926242 TGGTGGAGGTTCGACCCC 60.926 66.667 7.63 0.00 43.59 4.95
4568 5002 3.714001 GGTGGAGGTTCGACCCCC 61.714 72.222 0.00 0.00 39.07 5.40
4744 5283 4.141018 ACCAGTTTTCCACCCTCTATTTGT 60.141 41.667 0.00 0.00 0.00 2.83
4922 5528 3.896133 GCATCCGCCACATGCCAG 61.896 66.667 0.00 0.00 40.79 4.85
5364 5973 5.277974 CCCAAATTGACCTGCTTATATGTCG 60.278 44.000 0.00 0.00 0.00 4.35
5412 6021 3.983344 GCTGTTTATTTGGTGCAGTTCTG 59.017 43.478 0.00 0.00 0.00 3.02
5456 6066 1.146930 CTGGGCTGTACCGATGCAT 59.853 57.895 0.00 0.00 40.62 3.96
5503 6113 4.776349 TCTGTGTATGTTGTGTGGAAACT 58.224 39.130 0.00 0.00 0.00 2.66
5520 6130 4.097892 GGAAACTGTGGAAATGTGAAGTGT 59.902 41.667 0.00 0.00 0.00 3.55
5524 6134 5.620206 ACTGTGGAAATGTGAAGTGTGATA 58.380 37.500 0.00 0.00 0.00 2.15
5534 6144 4.455533 TGTGAAGTGTGATAATGTGCCTTC 59.544 41.667 0.00 0.00 0.00 3.46
5541 6151 4.696877 TGTGATAATGTGCCTTCTCACTTG 59.303 41.667 0.00 0.00 34.84 3.16
5542 6152 3.691118 TGATAATGTGCCTTCTCACTTGC 59.309 43.478 0.00 0.00 37.81 4.01
5622 6232 8.432013 ACATATATTCAGAGCTGGTTGACATTA 58.568 33.333 0.00 0.00 0.00 1.90
5756 6366 3.664276 CGTCTTCTTTGCATACGTTGGTG 60.664 47.826 0.00 0.00 0.00 4.17
5765 6375 2.230266 GCATACGTTGGTGGGTGAAAAT 59.770 45.455 0.00 0.00 0.00 1.82
5782 6392 7.554118 GGGTGAAAATCTTCAGATCACTCATTA 59.446 37.037 8.32 0.00 42.27 1.90
5789 6399 7.993821 TCTTCAGATCACTCATTACGATTTC 57.006 36.000 0.00 0.00 0.00 2.17
5828 6438 4.855298 AATTACTCCCTCCGATCCAAAA 57.145 40.909 0.00 0.00 0.00 2.44
5829 6439 5.388599 AATTACTCCCTCCGATCCAAAAT 57.611 39.130 0.00 0.00 0.00 1.82
5830 6440 6.509523 AATTACTCCCTCCGATCCAAAATA 57.490 37.500 0.00 0.00 0.00 1.40
5831 6441 5.961398 TTACTCCCTCCGATCCAAAATAA 57.039 39.130 0.00 0.00 0.00 1.40
5834 6444 5.133221 ACTCCCTCCGATCCAAAATAATTG 58.867 41.667 0.00 0.00 0.00 2.32
5854 6464 4.868450 TGAACTAAAACCACGACACTTG 57.132 40.909 0.00 0.00 0.00 3.16
5855 6465 3.623960 TGAACTAAAACCACGACACTTGG 59.376 43.478 0.00 0.00 40.32 3.61
5856 6466 3.547054 ACTAAAACCACGACACTTGGA 57.453 42.857 0.00 0.00 37.58 3.53
5857 6467 4.081322 ACTAAAACCACGACACTTGGAT 57.919 40.909 0.00 0.00 37.58 3.41
5858 6468 4.062991 ACTAAAACCACGACACTTGGATC 58.937 43.478 0.00 0.00 37.58 3.36
5862 6472 0.458543 CCACGACACTTGGATCGGAG 60.459 60.000 0.00 0.00 42.67 4.63
5908 6518 5.458595 TGGTATTCTGATAGAAGCTCTGGA 58.541 41.667 0.00 0.00 37.69 3.86
5997 6607 4.141158 ACAAAGTTCATCCTTGGGTTCTCT 60.141 41.667 0.00 0.00 0.00 3.10
6051 6661 2.572647 GAGTACACGTCCGTCGCG 60.573 66.667 0.00 0.00 44.19 5.87
6117 6727 2.082733 CAATCGATCACGCTTGCTTC 57.917 50.000 0.00 0.00 38.43 3.86
6120 6730 0.458543 TCGATCACGCTTGCTTCCTC 60.459 55.000 0.00 0.00 39.58 3.71
6395 7006 2.287788 CGGTTTGAGCAAAGCTGTGATT 60.288 45.455 8.49 0.00 44.15 2.57
6407 7018 4.445452 AGCTGTGATTAATGCAACAAGG 57.555 40.909 0.00 0.00 0.00 3.61
6420 7031 2.228103 GCAACAAGGCACTAAGGTTACC 59.772 50.000 0.00 0.00 38.49 2.85
6454 7069 2.639839 CTCTCCCCCAAGTTCTCTGAAA 59.360 50.000 0.00 0.00 0.00 2.69
6458 7073 1.882623 CCCCAAGTTCTCTGAAAGTGC 59.117 52.381 0.00 0.00 33.76 4.40
6484 7099 0.312102 GTTGGGCTGAACTGTCTTGC 59.688 55.000 0.00 0.00 0.00 4.01
6569 7184 2.033049 TCTCGCTAGAACTATGTTCCGC 59.967 50.000 6.80 8.83 0.00 5.54
6700 7315 9.349713 ACCTCTAGTAGTTTATCTCATTCTGAG 57.650 37.037 0.00 0.00 45.59 3.35
6720 7335 3.154710 AGACGTGGTCACTCTATTGACA 58.845 45.455 0.00 0.00 46.68 3.58
6757 7372 7.265647 CTACTACTTAGCAGTGAAGCTATGA 57.734 40.000 13.55 0.00 45.72 2.15
6773 7388 6.985653 AGCTATGATCTGTATGTTGTAGGT 57.014 37.500 0.00 0.00 0.00 3.08
6826 7441 6.099701 ACCTGTTATGCTATGTATCTGTGGAA 59.900 38.462 0.00 0.00 0.00 3.53
6835 7450 3.792401 TGTATCTGTGGAATTGCGGTAG 58.208 45.455 0.00 0.00 0.00 3.18
6979 7602 6.624352 TGAAGTTCTGAATGTTTCTTCTGG 57.376 37.500 14.75 0.00 34.37 3.86
7013 7803 5.615764 GCTCTTTTCCATGTCGTTTCTTCTC 60.616 44.000 0.00 0.00 0.00 2.87
7081 7873 1.596709 CGAGCTGATACTGACAGAGCG 60.597 57.143 10.08 0.00 37.54 5.03
7101 7901 0.526662 CGTGGAACTCTAGTCGCCTT 59.473 55.000 0.00 0.00 31.75 4.35
7122 7922 9.796120 CGCCTTCCAAGTAAAATAAATAAATGA 57.204 29.630 0.00 0.00 0.00 2.57
7143 7943 8.924511 AATGAAACCTCTCAGTAAATTTGAGA 57.075 30.769 7.84 7.84 46.47 3.27
7234 8035 6.808321 TCTATACCACTAGAGGCAAACATT 57.192 37.500 6.07 0.00 0.00 2.71
7240 8046 3.189287 CACTAGAGGCAAACATTCGCTTT 59.811 43.478 0.00 0.00 0.00 3.51
7274 8080 9.605275 TGTTTTTCATTCATTTGTGGATTAACA 57.395 25.926 0.00 0.00 0.00 2.41
7310 8116 6.174760 AGCAGATTATTACGGTTGGTTGTTA 58.825 36.000 0.00 0.00 0.00 2.41
7315 8121 7.666804 AGATTATTACGGTTGGTTGTTACCTTT 59.333 33.333 0.00 0.00 45.27 3.11
7350 8156 8.415553 TCTATGTTGGCTTGGATTTTAATGATG 58.584 33.333 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.507944 GTGCTCAGCCGGATGGAT 59.492 61.111 21.53 0.00 37.49 3.41
4 5 3.785859 GGTGCTCAGCCGGATGGA 61.786 66.667 21.53 5.74 37.49 3.41
5 6 3.746949 GAGGTGCTCAGCCGGATGG 62.747 68.421 21.53 11.86 38.77 3.51
6 7 2.202987 GAGGTGCTCAGCCGGATG 60.203 66.667 15.12 15.12 0.00 3.51
7 8 3.474570 GGAGGTGCTCAGCCGGAT 61.475 66.667 5.05 0.00 31.08 4.18
10 11 4.154347 GAGGGAGGTGCTCAGCCG 62.154 72.222 0.00 0.00 31.08 5.52
11 12 3.791586 GGAGGGAGGTGCTCAGCC 61.792 72.222 0.00 0.00 31.08 4.85
12 13 3.791586 GGGAGGGAGGTGCTCAGC 61.792 72.222 0.00 0.00 31.08 4.26
13 14 2.040278 AGGGAGGGAGGTGCTCAG 59.960 66.667 0.00 0.00 31.08 3.35
14 15 2.039624 GAGGGAGGGAGGTGCTCA 59.960 66.667 0.00 0.00 31.08 4.26
52 53 0.463474 AGGAGACGACTAGCGGTACC 60.463 60.000 0.16 0.16 46.49 3.34
53 54 0.656785 CAGGAGACGACTAGCGGTAC 59.343 60.000 10.53 0.00 46.49 3.34
54 55 1.094073 GCAGGAGACGACTAGCGGTA 61.094 60.000 10.53 0.00 46.49 4.02
55 56 2.408241 GCAGGAGACGACTAGCGGT 61.408 63.158 10.53 0.00 46.49 5.68
56 57 0.814410 TAGCAGGAGACGACTAGCGG 60.814 60.000 10.53 0.00 46.49 5.52
67 72 3.922640 GGGCGAGGCTAGCAGGAG 61.923 72.222 21.15 5.72 36.08 3.69
85 92 4.176271 GGCTGAATTATTGTGCCTGTTTC 58.824 43.478 9.53 0.00 40.36 2.78
131 138 1.916874 AGGGGAGCTAAGAGGGAAAAC 59.083 52.381 0.00 0.00 0.00 2.43
141 148 3.109928 GTGGTTTACCTAGGGGAGCTAA 58.890 50.000 14.81 0.00 36.82 3.09
209 216 4.394712 CGCGTGGAGAAAGGGGCT 62.395 66.667 0.00 0.00 0.00 5.19
220 227 1.009335 CATCATGGATTGCGCGTGG 60.009 57.895 8.43 0.00 0.00 4.94
325 352 9.224267 TGGAGTTTACGGTGTATAGATAGATAC 57.776 37.037 0.00 0.00 33.60 2.24
326 353 9.797642 TTGGAGTTTACGGTGTATAGATAGATA 57.202 33.333 0.00 0.00 0.00 1.98
327 354 8.701908 TTGGAGTTTACGGTGTATAGATAGAT 57.298 34.615 0.00 0.00 0.00 1.98
337 364 5.008911 GGTGTATTTTTGGAGTTTACGGTGT 59.991 40.000 0.00 0.00 0.00 4.16
338 365 5.454520 GGTGTATTTTTGGAGTTTACGGTG 58.545 41.667 0.00 0.00 0.00 4.94
364 391 3.056328 GGGAGCTGGCGGTGAAAC 61.056 66.667 0.00 0.00 0.00 2.78
395 426 3.121030 GCGATGCTTCTGCGTGGT 61.121 61.111 0.00 0.00 43.34 4.16
396 427 3.869272 GGCGATGCTTCTGCGTGG 61.869 66.667 9.19 0.00 43.34 4.94
397 428 2.806856 GAGGCGATGCTTCTGCGTG 61.807 63.158 13.25 0.00 43.34 5.34
398 429 2.510238 GAGGCGATGCTTCTGCGT 60.510 61.111 9.90 9.90 43.34 5.24
443 474 6.615726 ACTGTATACTCCTCTTCTCTCTCTCT 59.384 42.308 4.17 0.00 0.00 3.10
479 556 1.967779 GAATCTCCCCTGTAGCTCCTC 59.032 57.143 0.00 0.00 0.00 3.71
598 683 3.737172 CTGCCTTTGGTTCGCGGG 61.737 66.667 6.13 0.00 0.00 6.13
601 686 2.192608 CTGCTCTGCCTTTGGTTCGC 62.193 60.000 0.00 0.00 0.00 4.70
603 688 1.163554 CTCTGCTCTGCCTTTGGTTC 58.836 55.000 0.00 0.00 0.00 3.62
608 702 2.610519 CCCCCTCTGCTCTGCCTTT 61.611 63.158 0.00 0.00 0.00 3.11
725 843 3.589881 CGTAGCGGGGTAGACGGG 61.590 72.222 0.00 0.00 0.00 5.28
738 856 2.183555 GGTGGGTCGGAAGCGTAG 59.816 66.667 0.00 0.00 0.00 3.51
739 857 2.601067 TGGTGGGTCGGAAGCGTA 60.601 61.111 0.00 0.00 0.00 4.42
740 858 4.309950 GTGGTGGGTCGGAAGCGT 62.310 66.667 0.00 0.00 0.00 5.07
744 862 3.948719 GCTGGTGGTGGGTCGGAA 61.949 66.667 0.00 0.00 0.00 4.30
762 880 2.863153 CTAGCGTGTGGTGCTTGC 59.137 61.111 0.00 0.00 43.71 4.01
763 881 2.863153 GCTAGCGTGTGGTGCTTG 59.137 61.111 0.00 0.00 43.71 4.01
764 882 2.738521 CGCTAGCGTGTGGTGCTT 60.739 61.111 28.66 0.00 43.71 3.91
765 883 4.742201 CCGCTAGCGTGTGGTGCT 62.742 66.667 33.18 0.00 46.29 4.40
826 972 2.820037 GGTACAGCGGCTTCCAGC 60.820 66.667 0.00 0.00 41.46 4.85
868 1014 4.778143 GTGGTAGCGGGGCAGTGG 62.778 72.222 0.00 0.00 0.00 4.00
871 1017 4.778143 GTGGTGGTAGCGGGGCAG 62.778 72.222 0.00 0.00 0.00 4.85
933 1087 4.144727 TCCTCCTCCTCCCGAGCC 62.145 72.222 0.00 0.00 37.27 4.70
959 1113 2.125952 CCTCAGATCACACGCGCA 60.126 61.111 5.73 0.00 0.00 6.09
1035 1189 3.706373 TCGTCCTGCTTCTGCCCC 61.706 66.667 0.00 0.00 38.71 5.80
1083 1240 0.920763 TACAGTAGGAGACCCCGGGA 60.921 60.000 26.32 0.00 40.87 5.14
1101 1258 0.543410 ACGGTGGTGGACTGGTGATA 60.543 55.000 0.00 0.00 34.90 2.15
1156 1317 4.754667 GGACGAACGGGGGAGCAC 62.755 72.222 0.00 0.00 0.00 4.40
1289 1467 3.116531 CCGAAAACGACGGGAGCC 61.117 66.667 0.00 0.00 45.65 4.70
1417 1595 3.804193 GCCGGGAAGCAAAGCTCG 61.804 66.667 2.18 0.00 38.25 5.03
1459 1637 2.159156 GGAACAAAACGGAAAAGGCAGT 60.159 45.455 0.00 0.00 0.00 4.40
1572 1757 1.503542 GCATCAGCACGGGTCAAAG 59.496 57.895 0.00 0.00 41.58 2.77
1591 1776 2.055838 TGTGTTGAATGTCGAGTACGC 58.944 47.619 0.00 0.00 39.58 4.42
1592 1777 3.047093 TGTGTGTTGAATGTCGAGTACG 58.953 45.455 0.00 0.00 41.26 3.67
1610 1795 4.325204 CGACAATCATGCAAATTCCTTGTG 59.675 41.667 0.00 0.00 37.36 3.33
1633 1818 2.113986 CATCCGAAGCCCCCATCC 59.886 66.667 0.00 0.00 0.00 3.51
1641 1826 2.369394 ACCAGAAAATCCATCCGAAGC 58.631 47.619 0.00 0.00 0.00 3.86
1642 1827 3.758554 ACAACCAGAAAATCCATCCGAAG 59.241 43.478 0.00 0.00 0.00 3.79
1645 1830 4.519540 AAACAACCAGAAAATCCATCCG 57.480 40.909 0.00 0.00 0.00 4.18
1657 1842 3.120041 CAAAGGCGGTAAAAACAACCAG 58.880 45.455 0.00 0.00 36.78 4.00
1661 1846 3.068873 AGCATCAAAGGCGGTAAAAACAA 59.931 39.130 0.00 0.00 36.08 2.83
1686 1871 1.173444 AACCAGTCTGCGACTCGACT 61.173 55.000 1.63 0.00 41.37 4.18
1687 1872 0.729816 GAACCAGTCTGCGACTCGAC 60.730 60.000 1.63 0.00 41.37 4.20
1688 1873 0.889638 AGAACCAGTCTGCGACTCGA 60.890 55.000 1.63 0.00 41.37 4.04
1689 1874 1.581954 AGAACCAGTCTGCGACTCG 59.418 57.895 8.02 5.29 41.37 4.18
1757 1944 6.993878 CGTAAGAATCGAAGTCACAAATCAT 58.006 36.000 0.00 0.00 43.02 2.45
1758 1945 6.389622 CGTAAGAATCGAAGTCACAAATCA 57.610 37.500 0.00 0.00 43.02 2.57
1790 1977 5.122519 TCGCAAATATAGCACCAGATTTCA 58.877 37.500 1.62 0.00 0.00 2.69
1820 2007 9.104965 TGTGAATCCAAAGATTAATTACTACCG 57.895 33.333 0.00 0.00 42.93 4.02
1840 2028 1.795768 ACGCGTGAGTTCATGTGAAT 58.204 45.000 12.93 0.00 43.92 2.57
1845 2033 1.125021 GAGTCAACGCGTGAGTTCATG 59.875 52.381 14.98 5.32 40.19 3.07
2029 2217 1.197721 CTGAAAGTGACAACGATGGGC 59.802 52.381 0.00 0.00 0.00 5.36
2050 2238 4.778534 AACTGAAGAATCAATGCAGGTG 57.221 40.909 0.00 0.00 34.49 4.00
2051 2239 5.564550 AGTAACTGAAGAATCAATGCAGGT 58.435 37.500 0.00 0.00 34.49 4.00
2052 2240 6.320171 CAAGTAACTGAAGAATCAATGCAGG 58.680 40.000 0.00 0.00 34.49 4.85
2066 2254 1.378762 GCCCCTGCCAAGTAACTGA 59.621 57.895 0.00 0.00 0.00 3.41
2102 2296 7.125536 AGAATGCATGATATGATAACACACG 57.874 36.000 0.00 0.00 0.00 4.49
2112 2306 8.697846 AAAACAGACAAAGAATGCATGATATG 57.302 30.769 0.00 0.31 0.00 1.78
2227 2422 6.659776 ACAAGAATTCGCTCTTCTACAAAAC 58.340 36.000 0.00 0.00 33.25 2.43
2296 2491 2.771089 ACAGTGTCAGCCTTACATGTG 58.229 47.619 9.11 0.00 0.00 3.21
2297 2492 4.617253 TTACAGTGTCAGCCTTACATGT 57.383 40.909 2.69 2.69 0.00 3.21
2358 2554 4.929479 AGGAAGGGTACACATTAAATGCA 58.071 39.130 0.00 0.00 0.00 3.96
2412 2609 6.008331 ACATAAAAGGAACTAACAAGGACCC 58.992 40.000 0.00 0.00 38.49 4.46
2413 2610 6.940867 AGACATAAAAGGAACTAACAAGGACC 59.059 38.462 0.00 0.00 38.49 4.46
2414 2611 7.981102 AGACATAAAAGGAACTAACAAGGAC 57.019 36.000 0.00 0.00 38.49 3.85
2415 2612 7.664318 GGAAGACATAAAAGGAACTAACAAGGA 59.336 37.037 0.00 0.00 38.49 3.36
2416 2613 7.665974 AGGAAGACATAAAAGGAACTAACAAGG 59.334 37.037 0.00 0.00 38.49 3.61
2417 2614 8.622948 AGGAAGACATAAAAGGAACTAACAAG 57.377 34.615 0.00 0.00 38.49 3.16
2419 2616 9.886132 GATAGGAAGACATAAAAGGAACTAACA 57.114 33.333 0.00 0.00 38.49 2.41
2424 2621 9.449719 TTCAAGATAGGAAGACATAAAAGGAAC 57.550 33.333 0.00 0.00 0.00 3.62
2453 2821 2.541233 ACTCAGGAGGTATGAGCAGT 57.459 50.000 2.96 0.00 46.64 4.40
2463 2831 1.613925 TGTGTCTTCGAACTCAGGAGG 59.386 52.381 0.00 0.00 0.00 4.30
2475 2843 4.382147 GGAACAGAGGGAGTATGTGTCTTC 60.382 50.000 0.00 0.00 28.49 2.87
2494 2862 8.758633 ATTCTATATGCACTACGTTATGGAAC 57.241 34.615 0.00 0.00 0.00 3.62
2495 2863 9.772973 AAATTCTATATGCACTACGTTATGGAA 57.227 29.630 0.00 0.00 0.00 3.53
2496 2864 9.772973 AAAATTCTATATGCACTACGTTATGGA 57.227 29.630 0.00 0.00 0.00 3.41
2501 2869 9.378551 TCTCAAAAATTCTATATGCACTACGTT 57.621 29.630 0.00 0.00 0.00 3.99
2502 2870 8.942338 TCTCAAAAATTCTATATGCACTACGT 57.058 30.769 0.00 0.00 0.00 3.57
2503 2871 9.855361 CTTCTCAAAAATTCTATATGCACTACG 57.145 33.333 0.00 0.00 0.00 3.51
2518 2886 4.022935 TGCGATGCTTGACTTCTCAAAAAT 60.023 37.500 0.00 0.00 35.92 1.82
2526 2894 2.977405 AGTTTGCGATGCTTGACTTC 57.023 45.000 0.00 0.00 0.00 3.01
2539 2907 4.633565 TCCACAAATTTGGTCAAAGTTTGC 59.366 37.500 21.74 6.16 36.60 3.68
2552 2920 8.750515 ATGGAAATGTTTTTCTCCACAAATTT 57.249 26.923 0.00 0.00 40.91 1.82
2553 2921 8.212995 AGATGGAAATGTTTTTCTCCACAAATT 58.787 29.630 0.00 0.00 40.91 1.82
2566 2934 9.247861 AGTTTAGCATTCTAGATGGAAATGTTT 57.752 29.630 0.00 0.00 0.00 2.83
2633 3001 8.877195 ACGGAGGGAGTACAATACAAAATATAT 58.123 33.333 0.00 0.00 0.00 0.86
2645 3013 0.178926 TTGGGACGGAGGGAGTACAA 60.179 55.000 0.00 0.00 0.00 2.41
2647 3015 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
2648 3016 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2649 3017 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
2650 3018 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2651 3019 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2652 3020 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2653 3021 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2654 3022 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2655 3023 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2656 3024 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2657 3025 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2658 3026 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2659 3027 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2660 3028 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
2668 3036 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
2669 3037 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
2671 3039 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
2672 3040 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
2691 3059 9.745880 CACTAAAATGTAACTAGATACATCCGT 57.254 33.333 21.77 14.49 43.83 4.69
2692 3060 9.745880 ACACTAAAATGTAACTAGATACATCCG 57.254 33.333 21.77 14.02 43.83 4.18
2703 3071 8.893727 GGATGCATCTAACACTAAAATGTAACT 58.106 33.333 25.28 0.00 30.75 2.24
2704 3072 7.850982 CGGATGCATCTAACACTAAAATGTAAC 59.149 37.037 25.28 2.13 30.75 2.50
2705 3073 7.551262 ACGGATGCATCTAACACTAAAATGTAA 59.449 33.333 25.28 0.00 30.75 2.41
2706 3074 7.045416 ACGGATGCATCTAACACTAAAATGTA 58.955 34.615 25.28 0.00 30.75 2.29
2707 3075 5.880332 ACGGATGCATCTAACACTAAAATGT 59.120 36.000 25.28 0.00 0.00 2.71
2708 3076 6.363577 ACGGATGCATCTAACACTAAAATG 57.636 37.500 25.28 0.00 0.00 2.32
2709 3077 8.150945 AGATACGGATGCATCTAACACTAAAAT 58.849 33.333 25.28 5.90 29.66 1.82
2710 3078 7.497595 AGATACGGATGCATCTAACACTAAAA 58.502 34.615 25.28 1.60 29.66 1.52
2711 3079 7.050970 AGATACGGATGCATCTAACACTAAA 57.949 36.000 25.28 2.95 29.66 1.85
2712 3080 6.650427 AGATACGGATGCATCTAACACTAA 57.350 37.500 25.28 4.42 29.66 2.24
2713 3081 7.119407 GTCTAGATACGGATGCATCTAACACTA 59.881 40.741 25.28 19.55 34.25 2.74
2714 3082 6.004574 TCTAGATACGGATGCATCTAACACT 58.995 40.000 25.28 19.49 34.25 3.55
2715 3083 6.087522 GTCTAGATACGGATGCATCTAACAC 58.912 44.000 25.28 14.23 34.25 3.32
2716 3084 5.768164 TGTCTAGATACGGATGCATCTAACA 59.232 40.000 25.28 12.86 34.25 2.41
2717 3085 6.255596 TGTCTAGATACGGATGCATCTAAC 57.744 41.667 25.28 10.33 34.25 2.34
2718 3086 6.894339 TTGTCTAGATACGGATGCATCTAA 57.106 37.500 25.28 11.93 34.25 2.10
2719 3087 6.894339 TTTGTCTAGATACGGATGCATCTA 57.106 37.500 25.28 12.00 33.58 1.98
2720 3088 5.791336 TTTGTCTAGATACGGATGCATCT 57.209 39.130 25.28 10.06 35.67 2.90
2721 3089 5.928839 ACATTTGTCTAGATACGGATGCATC 59.071 40.000 18.81 18.81 0.00 3.91
2722 3090 5.858381 ACATTTGTCTAGATACGGATGCAT 58.142 37.500 0.00 0.00 0.00 3.96
2723 3091 5.276461 ACATTTGTCTAGATACGGATGCA 57.724 39.130 0.00 0.00 0.00 3.96
2724 3092 7.115095 GTCTTACATTTGTCTAGATACGGATGC 59.885 40.741 0.00 0.00 0.00 3.91
2725 3093 8.135529 TGTCTTACATTTGTCTAGATACGGATG 58.864 37.037 0.00 0.85 0.00 3.51
2726 3094 8.234136 TGTCTTACATTTGTCTAGATACGGAT 57.766 34.615 0.00 0.00 0.00 4.18
2727 3095 7.634671 TGTCTTACATTTGTCTAGATACGGA 57.365 36.000 0.00 0.00 0.00 4.69
2728 3096 8.188799 TCTTGTCTTACATTTGTCTAGATACGG 58.811 37.037 0.00 0.00 0.00 4.02
2729 3097 9.569167 TTCTTGTCTTACATTTGTCTAGATACG 57.431 33.333 0.00 0.00 0.00 3.06
2736 3104 9.956720 CTCAAAATTCTTGTCTTACATTTGTCT 57.043 29.630 0.00 0.00 29.85 3.41
2737 3105 9.950680 TCTCAAAATTCTTGTCTTACATTTGTC 57.049 29.630 0.00 0.00 29.85 3.18
2738 3106 9.736023 GTCTCAAAATTCTTGTCTTACATTTGT 57.264 29.630 0.00 0.00 29.85 2.83
2739 3107 8.895845 CGTCTCAAAATTCTTGTCTTACATTTG 58.104 33.333 0.00 0.00 29.24 2.32
2740 3108 8.076178 CCGTCTCAAAATTCTTGTCTTACATTT 58.924 33.333 0.00 0.00 0.00 2.32
2741 3109 7.444183 TCCGTCTCAAAATTCTTGTCTTACATT 59.556 33.333 0.00 0.00 0.00 2.71
2742 3110 6.934645 TCCGTCTCAAAATTCTTGTCTTACAT 59.065 34.615 0.00 0.00 0.00 2.29
2743 3111 6.285224 TCCGTCTCAAAATTCTTGTCTTACA 58.715 36.000 0.00 0.00 0.00 2.41
2744 3112 6.128526 CCTCCGTCTCAAAATTCTTGTCTTAC 60.129 42.308 0.00 0.00 0.00 2.34
2745 3113 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
2746 3114 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
2747 3115 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
2748 3116 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
2749 3117 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
2750 3118 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
2751 3119 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
2752 3120 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
2753 3121 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
2754 3122 4.094476 TCTACTCCCTCCGTCTCAAAATT 58.906 43.478 0.00 0.00 0.00 1.82
2755 3123 3.709587 TCTACTCCCTCCGTCTCAAAAT 58.290 45.455 0.00 0.00 0.00 1.82
2756 3124 3.165087 TCTACTCCCTCCGTCTCAAAA 57.835 47.619 0.00 0.00 0.00 2.44
2757 3125 2.893215 TCTACTCCCTCCGTCTCAAA 57.107 50.000 0.00 0.00 0.00 2.69
2758 3126 4.104261 TCATATCTACTCCCTCCGTCTCAA 59.896 45.833 0.00 0.00 0.00 3.02
2759 3127 3.651423 TCATATCTACTCCCTCCGTCTCA 59.349 47.826 0.00 0.00 0.00 3.27
2760 3128 4.289238 TCATATCTACTCCCTCCGTCTC 57.711 50.000 0.00 0.00 0.00 3.36
2761 3129 4.726035 TTCATATCTACTCCCTCCGTCT 57.274 45.455 0.00 0.00 0.00 4.18
2762 3130 6.181908 ACTATTCATATCTACTCCCTCCGTC 58.818 44.000 0.00 0.00 0.00 4.79
2763 3131 6.142259 ACTATTCATATCTACTCCCTCCGT 57.858 41.667 0.00 0.00 0.00 4.69
2764 3132 7.067251 GGTAACTATTCATATCTACTCCCTCCG 59.933 44.444 0.00 0.00 0.00 4.63
2765 3133 8.296211 GGTAACTATTCATATCTACTCCCTCC 57.704 42.308 0.00 0.00 0.00 4.30
2850 3219 3.587061 ACTCCCATGTAAACATCACTCCA 59.413 43.478 0.00 0.00 33.61 3.86
2872 3241 4.695455 GCAGAGCATTCAACCTTACAACTA 59.305 41.667 0.00 0.00 0.00 2.24
2901 3270 5.972107 AAGGACTTCTGGTTCATCATTTG 57.028 39.130 0.00 0.00 0.00 2.32
2913 3282 9.403110 CAATATTCTGAACAAAAAGGACTTCTG 57.597 33.333 0.00 0.00 0.00 3.02
2983 3388 8.633561 GGCTAGCAAAAGATTAAGTTAATGGAT 58.366 33.333 18.24 0.00 0.00 3.41
2995 3401 2.436417 TCGCAAGGCTAGCAAAAGATT 58.564 42.857 18.24 0.00 38.47 2.40
3192 3601 5.023533 TGATAACAGTAGTTCCCAGCATC 57.976 43.478 0.00 0.00 39.15 3.91
3513 3933 1.414550 TGTGTGGATCAGGTTCGTTCA 59.585 47.619 0.00 0.00 0.00 3.18
3622 4050 6.366877 CACGCATGATTTTGAGGAATTTCTTT 59.633 34.615 0.00 0.00 0.00 2.52
3792 4220 7.165485 TGCTATTCCTGCTAGAACACTTTTTA 58.835 34.615 0.00 0.00 0.00 1.52
3948 4380 8.603242 AACAAGTATCGAGTAGAAACACAATT 57.397 30.769 0.00 0.00 0.00 2.32
4014 4446 4.393062 AGACCAATCTCAACACATTTAGCG 59.607 41.667 0.00 0.00 0.00 4.26
4075 4507 4.284829 TGAGTGCATAGGAATTGTGTCA 57.715 40.909 0.00 0.00 0.00 3.58
4135 4567 0.458370 GGCGTAAAAATGCAGCTGGG 60.458 55.000 17.12 0.00 0.00 4.45
4160 4592 4.223144 AGGTACTGCAAAAATGAAAGGGT 58.777 39.130 0.00 0.00 37.18 4.34
4258 4692 3.309961 ACCGTCAGCAGATATGCATAG 57.690 47.619 15.82 4.11 37.25 2.23
4300 4734 5.885449 AATGAAATTGGGTCTTTGGTGAA 57.115 34.783 0.00 0.00 33.44 3.18
4336 4770 2.359900 GCACCACCAATTAGACCAGAG 58.640 52.381 0.00 0.00 0.00 3.35
4371 4805 7.867403 GGAACAAGCATATCTTCAGAAAAACAA 59.133 33.333 0.00 0.00 31.27 2.83
4408 4842 1.266989 GTGTTACTGAACAGGCAAGGC 59.733 52.381 6.76 0.00 46.20 4.35
4414 4848 4.307432 AGACATTCGTGTTACTGAACAGG 58.693 43.478 6.76 4.54 46.20 4.00
4420 4854 2.942710 ACGGAGACATTCGTGTTACTG 58.057 47.619 0.00 0.00 38.25 2.74
4545 4979 1.533033 TCGAACCTCCACCAGAGCA 60.533 57.895 0.00 0.00 41.74 4.26
4546 4980 1.079750 GTCGAACCTCCACCAGAGC 60.080 63.158 0.00 0.00 41.74 4.09
4547 4981 1.592223 GGTCGAACCTCCACCAGAG 59.408 63.158 0.00 0.00 42.83 3.35
4548 4982 1.911766 GGGTCGAACCTCCACCAGA 60.912 63.158 13.76 0.00 38.64 3.86
4549 4983 2.663196 GGGTCGAACCTCCACCAG 59.337 66.667 13.76 0.00 38.64 4.00
4550 4984 2.926242 GGGGTCGAACCTCCACCA 60.926 66.667 21.19 0.00 38.64 4.17
4719 5153 4.838904 ATAGAGGGTGGAAAACTGGTAC 57.161 45.455 0.00 0.00 0.00 3.34
4720 5154 5.073965 ACAAATAGAGGGTGGAAAACTGGTA 59.926 40.000 0.00 0.00 0.00 3.25
4721 5155 4.141018 ACAAATAGAGGGTGGAAAACTGGT 60.141 41.667 0.00 0.00 0.00 4.00
4722 5156 4.407365 ACAAATAGAGGGTGGAAAACTGG 58.593 43.478 0.00 0.00 0.00 4.00
4723 5157 6.238648 AGTACAAATAGAGGGTGGAAAACTG 58.761 40.000 0.00 0.00 0.00 3.16
4724 5158 6.043938 TGAGTACAAATAGAGGGTGGAAAACT 59.956 38.462 0.00 0.00 0.00 2.66
4725 5159 6.148976 GTGAGTACAAATAGAGGGTGGAAAAC 59.851 42.308 0.00 0.00 0.00 2.43
4726 5160 6.043938 AGTGAGTACAAATAGAGGGTGGAAAA 59.956 38.462 0.00 0.00 0.00 2.29
4727 5161 5.546499 AGTGAGTACAAATAGAGGGTGGAAA 59.454 40.000 0.00 0.00 0.00 3.13
4728 5162 5.091552 AGTGAGTACAAATAGAGGGTGGAA 58.908 41.667 0.00 0.00 0.00 3.53
4729 5163 4.684724 AGTGAGTACAAATAGAGGGTGGA 58.315 43.478 0.00 0.00 0.00 4.02
4766 5305 9.484806 AGAAGTTGGGAGATTGATTATTTCATT 57.515 29.630 0.00 0.00 33.34 2.57
4770 5309 9.927081 ACATAGAAGTTGGGAGATTGATTATTT 57.073 29.630 0.00 0.00 0.00 1.40
4785 5391 8.088981 ACCAGTAGACTACAAACATAGAAGTTG 58.911 37.037 14.95 0.00 0.00 3.16
5069 5675 7.004691 GGAAATAAGGTGCATTCCTAGGTATT 58.995 38.462 9.08 0.00 38.61 1.89
5070 5676 6.102615 TGGAAATAAGGTGCATTCCTAGGTAT 59.897 38.462 9.08 0.93 41.51 2.73
5128 5737 4.558178 CAAAGAAGCATAATGGTTGCACA 58.442 39.130 0.00 0.00 42.62 4.57
5338 5947 6.194235 ACATATAAGCAGGTCAATTTGGGAA 58.806 36.000 0.00 0.00 0.00 3.97
5364 5973 7.798516 CCTACGAAATACAATGATGCAACATAC 59.201 37.037 10.15 0.00 0.00 2.39
5412 6021 7.807680 ACACTAGAAGCAAAATAACAAGCTAC 58.192 34.615 0.00 0.00 36.07 3.58
5456 6066 5.105023 AGCTCTTCTAATCAAGCATGAGACA 60.105 40.000 0.00 0.00 39.39 3.41
5503 6113 6.489700 ACATTATCACACTTCACATTTCCACA 59.510 34.615 0.00 0.00 0.00 4.17
5520 6130 3.691118 GCAAGTGAGAAGGCACATTATCA 59.309 43.478 0.00 0.00 41.19 2.15
5524 6134 0.877071 CGCAAGTGAGAAGGCACATT 59.123 50.000 0.00 0.00 41.19 2.71
5605 6215 5.633830 AATTGTAATGTCAACCAGCTCTG 57.366 39.130 0.00 0.00 0.00 3.35
5606 6216 5.565439 GCAAATTGTAATGTCAACCAGCTCT 60.565 40.000 0.00 0.00 0.00 4.09
5622 6232 6.486657 TCAGAGCTAAGTTAACTGCAAATTGT 59.513 34.615 17.40 0.00 0.00 2.71
5756 6366 5.248640 TGAGTGATCTGAAGATTTTCACCC 58.751 41.667 8.31 0.00 38.37 4.61
5765 6375 6.980978 GGAAATCGTAATGAGTGATCTGAAGA 59.019 38.462 0.00 0.00 0.00 2.87
5823 6433 8.696175 GTCGTGGTTTTAGTTCAATTATTTTGG 58.304 33.333 0.00 0.00 0.00 3.28
5828 6438 7.739498 AGTGTCGTGGTTTTAGTTCAATTAT 57.261 32.000 0.00 0.00 0.00 1.28
5829 6439 7.411274 CAAGTGTCGTGGTTTTAGTTCAATTA 58.589 34.615 0.00 0.00 0.00 1.40
5830 6440 6.262601 CAAGTGTCGTGGTTTTAGTTCAATT 58.737 36.000 0.00 0.00 0.00 2.32
5831 6441 5.220970 CCAAGTGTCGTGGTTTTAGTTCAAT 60.221 40.000 0.00 0.00 0.00 2.57
5834 6444 3.872771 TCCAAGTGTCGTGGTTTTAGTTC 59.127 43.478 2.19 0.00 37.43 3.01
5846 6456 1.141881 CCCTCCGATCCAAGTGTCG 59.858 63.158 0.00 0.00 37.58 4.35
5854 6464 3.697045 CTCATATGTACTCCCTCCGATCC 59.303 52.174 1.90 0.00 0.00 3.36
5855 6465 4.590918 TCTCATATGTACTCCCTCCGATC 58.409 47.826 1.90 0.00 0.00 3.69
5856 6466 4.289934 TCTCTCATATGTACTCCCTCCGAT 59.710 45.833 1.90 0.00 0.00 4.18
5857 6467 3.651423 TCTCTCATATGTACTCCCTCCGA 59.349 47.826 1.90 0.00 0.00 4.55
5858 6468 4.022413 TCTCTCATATGTACTCCCTCCG 57.978 50.000 1.90 0.00 0.00 4.63
5884 6494 6.080682 TCCAGAGCTTCTATCAGAATACCAT 58.919 40.000 0.00 0.00 33.13 3.55
5886 6496 6.603940 ATCCAGAGCTTCTATCAGAATACC 57.396 41.667 0.00 0.00 33.13 2.73
5908 6518 6.375455 CCAGCAGAACCTGTTAACAGATTAAT 59.625 38.462 32.50 14.42 46.59 1.40
5997 6607 2.665165 ACTGAAAAGCCCATGAACACA 58.335 42.857 0.00 0.00 0.00 3.72
6054 6664 3.660111 GTGTGCACAGGGCCGAAC 61.660 66.667 22.40 1.29 43.89 3.95
6117 6727 0.673985 TCAGTGTCCGTTCACAGAGG 59.326 55.000 9.28 0.00 40.37 3.69
6120 6730 0.939577 CGGTCAGTGTCCGTTCACAG 60.940 60.000 19.05 2.58 42.62 3.66
6395 7006 3.761897 ACCTTAGTGCCTTGTTGCATTA 58.238 40.909 0.00 0.00 44.30 1.90
6407 7018 6.505272 CAGATAGTACAGGTAACCTTAGTGC 58.495 44.000 0.00 0.00 37.17 4.40
6420 7031 2.243810 GGGGAGAGGCAGATAGTACAG 58.756 57.143 0.00 0.00 0.00 2.74
6484 7099 4.157911 AGGGCATAGGATTTCCCTGCAG 62.158 54.545 18.26 6.78 46.80 4.41
6569 7184 8.922676 CAAATATACAGCGGTAACCTAACATAG 58.077 37.037 0.00 0.00 32.19 2.23
6614 7229 5.801531 TGAGTAGCAAAACTTCCTAGTCA 57.198 39.130 0.00 0.00 38.51 3.41
6700 7315 3.502920 CTGTCAATAGAGTGACCACGTC 58.497 50.000 7.58 0.00 46.13 4.34
6704 7319 2.256306 TGGCTGTCAATAGAGTGACCA 58.744 47.619 7.58 0.00 46.13 4.02
6755 7370 7.390823 TGCTAAAACCTACAACATACAGATCA 58.609 34.615 0.00 0.00 0.00 2.92
6756 7371 7.764443 TCTGCTAAAACCTACAACATACAGATC 59.236 37.037 0.00 0.00 0.00 2.75
6757 7372 7.620880 TCTGCTAAAACCTACAACATACAGAT 58.379 34.615 0.00 0.00 0.00 2.90
6773 7388 5.957842 ACCATTCGATTGTTCTGCTAAAA 57.042 34.783 6.56 0.00 0.00 1.52
6820 7435 0.687920 TGTCCTACCGCAATTCCACA 59.312 50.000 0.00 0.00 0.00 4.17
6826 7441 6.720112 TTACTATTAGTGTCCTACCGCAAT 57.280 37.500 6.60 0.00 0.00 3.56
6835 7450 5.751990 CCCGACAACATTACTATTAGTGTCC 59.248 44.000 6.60 0.00 28.38 4.02
6873 7490 5.607119 AATTAATCATCCATAACGACCGC 57.393 39.130 0.00 0.00 0.00 5.68
6902 7519 1.200716 CTGCAAACATGCTGTGGTAGG 59.799 52.381 2.22 0.00 35.49 3.18
6979 7602 4.878397 ACATGGAAAAGAGCTGTAGTATGC 59.122 41.667 0.00 0.00 0.00 3.14
7054 7846 3.381590 TGTCAGTATCAGCTCGCAGTATT 59.618 43.478 0.00 0.00 0.00 1.89
7081 7873 1.516603 GGCGACTAGAGTTCCACGC 60.517 63.158 0.00 0.00 44.18 5.34
7176 7977 1.376812 GCGGTCCCCATCGAACTTT 60.377 57.895 0.00 0.00 0.00 2.66
7182 7983 3.622060 AAACAGGCGGTCCCCATCG 62.622 63.158 0.00 0.00 0.00 3.84
7240 8046 1.332065 TGAATGAAAAACAGCGCGACA 59.668 42.857 12.10 0.00 0.00 4.35
7246 8052 6.790285 ATCCACAAATGAATGAAAAACAGC 57.210 33.333 0.00 0.00 0.00 4.40
7310 8116 8.366359 AGCCAACATAGATAAAATCAAAAGGT 57.634 30.769 0.00 0.00 0.00 3.50
7315 8121 7.953005 TCCAAGCCAACATAGATAAAATCAA 57.047 32.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.