Multiple sequence alignment - TraesCS6A01G308900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G308900 chr6A 100.000 7937 0 0 1 7937 544144876 544152812 0.000000e+00 14657.0
1 TraesCS6A01G308900 chr6A 90.231 778 55 11 1 766 30521634 30520866 0.000000e+00 996.0
2 TraesCS6A01G308900 chr6A 87.887 710 64 16 54 747 585968960 585968257 0.000000e+00 815.0
3 TraesCS6A01G308900 chr6A 98.276 58 1 0 1 58 585969297 585969240 1.410000e-17 102.0
4 TraesCS6A01G308900 chr6B 95.573 5105 170 19 1900 6988 595207353 595212417 0.000000e+00 8124.0
5 TraesCS6A01G308900 chr6B 95.205 730 25 4 910 1635 595206413 595207136 0.000000e+00 1146.0
6 TraesCS6A01G308900 chr6B 80.748 535 30 28 7056 7532 595212587 595213106 4.560000e-92 350.0
7 TraesCS6A01G308900 chr6B 95.000 200 8 2 5524 5723 595211155 595211352 5.980000e-81 313.0
8 TraesCS6A01G308900 chr6B 94.416 197 8 2 5721 5914 595210957 595211153 4.660000e-77 300.0
9 TraesCS6A01G308900 chr6B 80.535 411 41 21 4903 5309 266751460 266751835 6.070000e-71 279.0
10 TraesCS6A01G308900 chr6B 86.170 94 10 2 4884 4975 566778121 566778029 1.820000e-16 99.0
11 TraesCS6A01G308900 chr6D 94.034 4056 155 47 1900 5915 397842284 397846292 0.000000e+00 6069.0
12 TraesCS6A01G308900 chr6D 94.290 1471 65 14 5523 6988 397846096 397847552 0.000000e+00 2233.0
13 TraesCS6A01G308900 chr6D 93.715 1066 33 12 869 1901 397840965 397842029 0.000000e+00 1567.0
14 TraesCS6A01G308900 chr6D 84.243 806 50 29 6991 7740 397847608 397848392 0.000000e+00 713.0
15 TraesCS6A01G308900 chr6D 95.876 194 5 2 5721 5913 397845903 397846094 2.150000e-80 311.0
16 TraesCS6A01G308900 chr6D 92.118 203 9 3 5522 5723 397846291 397846487 6.070000e-71 279.0
17 TraesCS6A01G308900 chr2B 91.622 752 53 8 1 747 601735983 601735237 0.000000e+00 1031.0
18 TraesCS6A01G308900 chr2B 89.059 457 44 6 254 706 788836918 788836464 5.380000e-156 562.0
19 TraesCS6A01G308900 chr2D 90.873 756 57 10 1 747 616118976 616118224 0.000000e+00 1003.0
20 TraesCS6A01G308900 chr2D 90.071 141 13 1 7796 7935 29821667 29821807 1.760000e-41 182.0
21 TraesCS6A01G308900 chr1A 90.310 774 48 10 1 756 490471942 490472706 0.000000e+00 989.0
22 TraesCS6A01G308900 chr3A 89.515 763 59 16 1 747 719761888 719761131 0.000000e+00 946.0
23 TraesCS6A01G308900 chr4B 88.904 712 67 10 1 702 466692353 466691644 0.000000e+00 867.0
24 TraesCS6A01G308900 chr4B 91.549 142 12 0 7796 7937 337535052 337534911 6.280000e-46 196.0
25 TraesCS6A01G308900 chr5D 89.970 668 56 8 1 660 369024598 369023934 0.000000e+00 852.0
26 TraesCS6A01G308900 chr5D 87.234 141 18 0 7797 7937 88172945 88173085 2.290000e-35 161.0
27 TraesCS6A01G308900 chr5B 85.479 606 54 18 1 586 680794746 680795337 1.140000e-167 601.0
28 TraesCS6A01G308900 chr5B 90.308 454 40 4 258 709 21668592 21668141 6.860000e-165 592.0
29 TraesCS6A01G308900 chr1B 90.498 442 40 2 258 698 20583898 20584338 4.130000e-162 582.0
30 TraesCS6A01G308900 chr7B 87.317 205 25 1 3370 3574 111307684 111307887 4.790000e-57 233.0
31 TraesCS6A01G308900 chr7B 91.803 61 5 0 5249 5309 111309914 111309974 1.420000e-12 86.1
32 TraesCS6A01G308900 chr7A 87.317 205 25 1 3370 3574 149295802 149296005 4.790000e-57 233.0
33 TraesCS6A01G308900 chr7A 84.393 173 16 6 4984 5149 48236891 48237059 8.240000e-35 159.0
34 TraesCS6A01G308900 chr7D 86.829 205 26 1 3370 3574 148142896 148143099 2.230000e-55 228.0
35 TraesCS6A01G308900 chr7D 86.331 139 19 0 7797 7935 86141342 86141480 1.380000e-32 152.0
36 TraesCS6A01G308900 chr7D 91.803 61 5 0 5249 5309 148144917 148144977 1.420000e-12 86.1
37 TraesCS6A01G308900 chr5A 83.333 192 20 7 4968 5152 472696420 472696234 4.930000e-37 167.0
38 TraesCS6A01G308900 chr2A 86.207 145 19 1 7793 7937 756364195 756364052 1.070000e-33 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G308900 chr6A 544144876 544152812 7936 False 14657.0 14657 100.000000 1 7937 1 chr6A.!!$F1 7936
1 TraesCS6A01G308900 chr6A 30520866 30521634 768 True 996.0 996 90.231000 1 766 1 chr6A.!!$R1 765
2 TraesCS6A01G308900 chr6A 585968257 585969297 1040 True 458.5 815 93.081500 1 747 2 chr6A.!!$R2 746
3 TraesCS6A01G308900 chr6B 595206413 595213106 6693 False 2046.6 8124 92.188400 910 7532 5 chr6B.!!$F2 6622
4 TraesCS6A01G308900 chr6D 397840965 397848392 7427 False 1862.0 6069 92.379333 869 7740 6 chr6D.!!$F1 6871
5 TraesCS6A01G308900 chr2B 601735237 601735983 746 True 1031.0 1031 91.622000 1 747 1 chr2B.!!$R1 746
6 TraesCS6A01G308900 chr2D 616118224 616118976 752 True 1003.0 1003 90.873000 1 747 1 chr2D.!!$R1 746
7 TraesCS6A01G308900 chr1A 490471942 490472706 764 False 989.0 989 90.310000 1 756 1 chr1A.!!$F1 755
8 TraesCS6A01G308900 chr3A 719761131 719761888 757 True 946.0 946 89.515000 1 747 1 chr3A.!!$R1 746
9 TraesCS6A01G308900 chr4B 466691644 466692353 709 True 867.0 867 88.904000 1 702 1 chr4B.!!$R2 701
10 TraesCS6A01G308900 chr5D 369023934 369024598 664 True 852.0 852 89.970000 1 660 1 chr5D.!!$R1 659
11 TraesCS6A01G308900 chr5B 680794746 680795337 591 False 601.0 601 85.479000 1 586 1 chr5B.!!$F1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
765 1105 0.317479 GGACCTGTCGTTAGCACAGT 59.683 55.000 1.03 0.0 39.84 3.55 F
790 1130 0.326264 AGAACAAGCCCACTAGCCAG 59.674 55.000 0.00 0.0 0.00 4.85 F
818 1158 0.396695 AGCCCGTCCGATCCTCTAAA 60.397 55.000 0.00 0.0 0.00 1.85 F
819 1159 0.462789 GCCCGTCCGATCCTCTAAAA 59.537 55.000 0.00 0.0 0.00 1.52 F
820 1160 1.134610 GCCCGTCCGATCCTCTAAAAA 60.135 52.381 0.00 0.0 0.00 1.94 F
1540 1903 1.375523 CACCAAGTACCTCGCCACC 60.376 63.158 0.00 0.0 0.00 4.61 F
1705 2072 1.383799 CTTCTCCAATGCACCCCCA 59.616 57.895 0.00 0.0 0.00 4.96 F
2875 3509 1.361668 CTTGGCAACGATCTGACCGG 61.362 60.000 0.00 0.0 42.51 5.28 F
3179 3826 2.132740 TCCGCACTTGTTTTGATTGC 57.867 45.000 0.00 0.0 0.00 3.56 F
3867 4519 1.077501 GCAGCTGGCCAACCTGATA 60.078 57.895 28.28 0.0 37.06 2.15 F
5118 5786 1.546323 CCTGATGAACAGCTGGTGGTT 60.546 52.381 19.93 2.3 44.52 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1708 2081 0.552848 TCGTAGTAATCGGGGGAGGT 59.447 55.000 0.00 0.00 0.00 3.85 R
2045 2678 1.325355 TTCCCCGAGCTAGAATACCG 58.675 55.000 0.00 0.00 0.00 4.02 R
2488 3121 3.106827 TGCATCTATCTGTCCACAGGAA 58.893 45.455 6.87 0.00 43.91 3.36 R
2569 3203 6.791887 TGTTTGAGAGACTGAAAAGCTATG 57.208 37.500 0.00 0.00 0.00 2.23 R
2820 3454 5.530915 CCTATAAAATCATCCGGCAAGTTCA 59.469 40.000 0.00 0.00 0.00 3.18 R
2862 3496 0.033796 TAGGGACCGGTCAGATCGTT 60.034 55.000 34.40 13.96 0.00 3.85 R
2952 3589 1.628340 TCCGACCACTGGACATGAAAT 59.372 47.619 0.71 0.00 0.00 2.17 R
3841 4493 1.401318 TTGGCCAGCTGCAAACATGT 61.401 50.000 8.66 0.00 43.89 3.21 R
4388 5046 5.364157 ACAGCCTAGGAGTACAAGGATTAAG 59.636 44.000 14.75 0.00 31.64 1.85 R
5827 6499 1.484240 CCCCTCACCAAACAAAAGCAA 59.516 47.619 0.00 0.00 0.00 3.91 R
6988 7856 0.161024 GACAAGACGAAGCCGAAACG 59.839 55.000 0.00 0.00 39.50 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 357 6.540083 ACCTGCTAAATTAGGTACAAACACT 58.460 36.000 1.88 0.00 45.20 3.55
238 528 8.866970 AAGTTGTTAAAAATATCCCGGTAAGA 57.133 30.769 0.00 0.00 0.00 2.10
248 538 2.620242 TCCCGGTAAGATTTGCGTAAC 58.380 47.619 0.00 0.00 0.00 2.50
295 586 4.332543 CAGACCTGATAACTTATGCGCAAA 59.667 41.667 17.11 9.55 0.00 3.68
313 604 4.218312 GCAAACCCCCTGATAATTCTGAT 58.782 43.478 0.00 0.00 0.00 2.90
589 915 6.154445 CCCAGAAAACAAATGTCTCAATCTG 58.846 40.000 0.00 0.00 33.36 2.90
592 918 7.541091 CCAGAAAACAAATGTCTCAATCTGATG 59.459 37.037 0.00 0.00 35.05 3.07
600 926 5.929058 TGTCTCAATCTGATGACTAGCTT 57.071 39.130 0.00 0.00 30.91 3.74
661 990 1.209747 GAGGTAGCGGGTTTGAATCCT 59.790 52.381 0.00 0.00 0.00 3.24
723 1063 1.523938 GATGTAGCGCCAGGGGAAC 60.524 63.158 7.95 5.12 0.00 3.62
724 1064 1.972660 GATGTAGCGCCAGGGGAACT 61.973 60.000 7.95 0.00 0.00 3.01
731 1071 2.291043 GCCAGGGGAACTTCGGAGA 61.291 63.158 0.00 0.00 0.00 3.71
749 1089 3.004944 GGAGAGAAGTGGATCATACGGAC 59.995 52.174 0.00 0.00 0.00 4.79
756 1096 1.030457 GGATCATACGGACCTGTCGT 58.970 55.000 0.00 0.00 43.64 4.34
759 1099 3.304525 GGATCATACGGACCTGTCGTTAG 60.305 52.174 0.00 0.00 41.38 2.34
763 1103 1.287815 CGGACCTGTCGTTAGCACA 59.712 57.895 0.00 0.00 0.00 4.57
764 1104 0.732880 CGGACCTGTCGTTAGCACAG 60.733 60.000 0.00 0.00 40.96 3.66
765 1105 0.317479 GGACCTGTCGTTAGCACAGT 59.683 55.000 1.03 0.00 39.84 3.55
766 1106 1.669211 GGACCTGTCGTTAGCACAGTC 60.669 57.143 1.03 0.00 39.84 3.51
767 1107 1.000607 GACCTGTCGTTAGCACAGTCA 60.001 52.381 1.03 0.00 39.84 3.41
768 1108 1.411246 ACCTGTCGTTAGCACAGTCAA 59.589 47.619 1.03 0.00 39.84 3.18
769 1109 2.159014 ACCTGTCGTTAGCACAGTCAAA 60.159 45.455 1.03 0.00 39.84 2.69
770 1110 2.869801 CCTGTCGTTAGCACAGTCAAAA 59.130 45.455 1.03 0.00 39.84 2.44
771 1111 3.311322 CCTGTCGTTAGCACAGTCAAAAA 59.689 43.478 1.03 0.00 39.84 1.94
772 1112 4.518217 CTGTCGTTAGCACAGTCAAAAAG 58.482 43.478 0.00 0.00 37.15 2.27
773 1113 4.185394 TGTCGTTAGCACAGTCAAAAAGA 58.815 39.130 0.00 0.00 0.00 2.52
774 1114 4.632251 TGTCGTTAGCACAGTCAAAAAGAA 59.368 37.500 0.00 0.00 0.00 2.52
775 1115 4.962151 GTCGTTAGCACAGTCAAAAAGAAC 59.038 41.667 0.00 0.00 0.00 3.01
776 1116 4.632251 TCGTTAGCACAGTCAAAAAGAACA 59.368 37.500 0.00 0.00 0.00 3.18
777 1117 5.122554 TCGTTAGCACAGTCAAAAAGAACAA 59.877 36.000 0.00 0.00 0.00 2.83
778 1118 5.452302 CGTTAGCACAGTCAAAAAGAACAAG 59.548 40.000 0.00 0.00 0.00 3.16
779 1119 3.774066 AGCACAGTCAAAAAGAACAAGC 58.226 40.909 0.00 0.00 0.00 4.01
780 1120 2.860136 GCACAGTCAAAAAGAACAAGCC 59.140 45.455 0.00 0.00 0.00 4.35
781 1121 3.447742 CACAGTCAAAAAGAACAAGCCC 58.552 45.455 0.00 0.00 0.00 5.19
782 1122 3.096092 ACAGTCAAAAAGAACAAGCCCA 58.904 40.909 0.00 0.00 0.00 5.36
783 1123 3.119137 ACAGTCAAAAAGAACAAGCCCAC 60.119 43.478 0.00 0.00 0.00 4.61
784 1124 3.131046 CAGTCAAAAAGAACAAGCCCACT 59.869 43.478 0.00 0.00 0.00 4.00
785 1125 4.338118 CAGTCAAAAAGAACAAGCCCACTA 59.662 41.667 0.00 0.00 0.00 2.74
786 1126 4.580580 AGTCAAAAAGAACAAGCCCACTAG 59.419 41.667 0.00 0.00 0.00 2.57
787 1127 3.317993 TCAAAAAGAACAAGCCCACTAGC 59.682 43.478 0.00 0.00 0.00 3.42
788 1128 1.911057 AAAGAACAAGCCCACTAGCC 58.089 50.000 0.00 0.00 0.00 3.93
789 1129 0.771127 AAGAACAAGCCCACTAGCCA 59.229 50.000 0.00 0.00 0.00 4.75
790 1130 0.326264 AGAACAAGCCCACTAGCCAG 59.674 55.000 0.00 0.00 0.00 4.85
791 1131 0.678048 GAACAAGCCCACTAGCCAGG 60.678 60.000 0.00 0.00 0.00 4.45
796 1136 4.845580 CCCACTAGCCAGGCTGCG 62.846 72.222 25.59 16.91 40.10 5.18
814 1154 3.917760 CCAGCCCGTCCGATCCTC 61.918 72.222 0.00 0.00 0.00 3.71
815 1155 2.835431 CAGCCCGTCCGATCCTCT 60.835 66.667 0.00 0.00 0.00 3.69
816 1156 1.528542 CAGCCCGTCCGATCCTCTA 60.529 63.158 0.00 0.00 0.00 2.43
817 1157 1.107538 CAGCCCGTCCGATCCTCTAA 61.108 60.000 0.00 0.00 0.00 2.10
818 1158 0.396695 AGCCCGTCCGATCCTCTAAA 60.397 55.000 0.00 0.00 0.00 1.85
819 1159 0.462789 GCCCGTCCGATCCTCTAAAA 59.537 55.000 0.00 0.00 0.00 1.52
820 1160 1.134610 GCCCGTCCGATCCTCTAAAAA 60.135 52.381 0.00 0.00 0.00 1.94
839 1179 3.414759 AAAACTTGTTTTCCTCCCCCT 57.585 42.857 5.74 0.00 0.00 4.79
840 1180 4.546224 AAAACTTGTTTTCCTCCCCCTA 57.454 40.909 5.74 0.00 0.00 3.53
841 1181 4.546224 AAACTTGTTTTCCTCCCCCTAA 57.454 40.909 0.00 0.00 0.00 2.69
842 1182 4.546224 AACTTGTTTTCCTCCCCCTAAA 57.454 40.909 0.00 0.00 0.00 1.85
843 1183 4.546224 ACTTGTTTTCCTCCCCCTAAAA 57.454 40.909 0.00 0.00 0.00 1.52
844 1184 4.886163 ACTTGTTTTCCTCCCCCTAAAAA 58.114 39.130 0.00 0.00 0.00 1.94
868 1208 8.500753 AAAAACTTGTTTTCCTCATTTTACCC 57.499 30.769 11.25 0.00 0.00 3.69
869 1209 7.432148 AAACTTGTTTTCCTCATTTTACCCT 57.568 32.000 0.00 0.00 0.00 4.34
870 1210 8.541899 AAACTTGTTTTCCTCATTTTACCCTA 57.458 30.769 0.00 0.00 0.00 3.53
871 1211 7.761038 ACTTGTTTTCCTCATTTTACCCTAG 57.239 36.000 0.00 0.00 0.00 3.02
872 1212 7.523415 ACTTGTTTTCCTCATTTTACCCTAGA 58.477 34.615 0.00 0.00 0.00 2.43
873 1213 8.002459 ACTTGTTTTCCTCATTTTACCCTAGAA 58.998 33.333 0.00 0.00 0.00 2.10
1000 1346 3.141488 CCTCCTCCTCACCGTCCG 61.141 72.222 0.00 0.00 0.00 4.79
1540 1903 1.375523 CACCAAGTACCTCGCCACC 60.376 63.158 0.00 0.00 0.00 4.61
1705 2072 1.383799 CTTCTCCAATGCACCCCCA 59.616 57.895 0.00 0.00 0.00 4.96
1708 2081 3.188903 TCCAATGCACCCCCACCA 61.189 61.111 0.00 0.00 0.00 4.17
1734 2107 3.428999 CCCCCGATTACTACGATAGCATG 60.429 52.174 0.00 0.00 42.67 4.06
1772 2145 2.949447 AGTTGGGAACTTCAGCATGTT 58.051 42.857 0.00 0.00 39.04 2.71
1990 2623 7.532571 TCAGCTCTTGAAAATATCACAATGTG 58.467 34.615 7.12 7.12 37.92 3.21
2160 2793 3.652055 ACTGTTCTATCCATCTCAGCCT 58.348 45.455 0.00 0.00 0.00 4.58
2400 3033 6.000219 TCTTCTCTTCCCTTCATTTGACTTG 59.000 40.000 0.00 0.00 0.00 3.16
2421 3054 7.941919 ACTTGTATGATAGCTAGATTCGAACA 58.058 34.615 0.00 0.00 0.00 3.18
2569 3203 2.162681 GATAGGGGCATATGTGTTGGC 58.837 52.381 4.29 0.00 38.82 4.52
2828 3462 7.148590 CCATTTAGCTGGTTTATTTGAACTTGC 60.149 37.037 0.00 0.00 0.00 4.01
2837 3471 5.913137 TTATTTGAACTTGCCGGATGATT 57.087 34.783 5.05 0.00 0.00 2.57
2862 3496 8.582657 TTTATAGGCATAGTTTTTACTTGGCA 57.417 30.769 0.00 0.00 35.52 4.92
2873 3507 2.380084 TACTTGGCAACGATCTGACC 57.620 50.000 0.00 0.00 42.51 4.02
2875 3509 1.361668 CTTGGCAACGATCTGACCGG 61.362 60.000 0.00 0.00 42.51 5.28
2950 3587 5.208463 GTGTTTCTCACTTTCTCTCCTCT 57.792 43.478 0.00 0.00 43.13 3.69
2951 3588 5.606505 GTGTTTCTCACTTTCTCTCCTCTT 58.393 41.667 0.00 0.00 43.13 2.85
2952 3589 6.750148 GTGTTTCTCACTTTCTCTCCTCTTA 58.250 40.000 0.00 0.00 43.13 2.10
3091 3728 6.636850 CAGTGTTTTCCCTTTTCTTCGTATTG 59.363 38.462 0.00 0.00 0.00 1.90
3102 3739 5.545658 TTCTTCGTATTGGATTCTGCAAC 57.454 39.130 0.00 0.00 28.29 4.17
3118 3755 4.523943 TCTGCAACCTGTCAATTATTTGCT 59.476 37.500 5.77 0.00 40.01 3.91
3144 3781 7.256756 AGTCATTCTCTTTCAGTTTGTTCAG 57.743 36.000 0.00 0.00 0.00 3.02
3162 3799 3.537580 TCAGTGCATTAACCGGTATTCC 58.462 45.455 8.00 0.00 0.00 3.01
3179 3826 2.132740 TCCGCACTTGTTTTGATTGC 57.867 45.000 0.00 0.00 0.00 3.56
3230 3880 7.267128 TGTATGATGCAAATGAAGAAAATCCC 58.733 34.615 0.00 0.00 0.00 3.85
3280 3930 2.552155 GCCTTCATGTCAACCCACAGTA 60.552 50.000 0.00 0.00 0.00 2.74
3867 4519 1.077501 GCAGCTGGCCAACCTGATA 60.078 57.895 28.28 0.00 37.06 2.15
4374 5032 7.665559 TCCTGTTCCCTATGCATTGAATATAAC 59.334 37.037 3.54 4.62 0.00 1.89
4388 5046 6.194796 TGAATATAACCAACAAGCAAGAGC 57.805 37.500 0.00 0.00 42.56 4.09
4508 5166 3.441101 AGGTCCTGTGCACTACTATCAA 58.559 45.455 19.41 0.00 0.00 2.57
4549 5208 3.890756 TCATTCACCTGCAATGTTTCAGT 59.109 39.130 0.00 0.00 33.61 3.41
4585 5244 6.511416 TCTGGTGTTAATGTTGTCAAATTGG 58.489 36.000 0.00 0.00 0.00 3.16
4809 5470 6.748333 TGCTTGATTTCTATTCTGGTCTTG 57.252 37.500 0.00 0.00 0.00 3.02
4810 5471 6.475504 TGCTTGATTTCTATTCTGGTCTTGA 58.524 36.000 0.00 0.00 0.00 3.02
4812 5473 7.066645 TGCTTGATTTCTATTCTGGTCTTGATG 59.933 37.037 0.00 0.00 0.00 3.07
4854 5521 5.405269 GGCTTATCATTTTTCGTGCAACTTT 59.595 36.000 0.00 0.00 31.75 2.66
4855 5522 6.073819 GGCTTATCATTTTTCGTGCAACTTTT 60.074 34.615 0.00 0.00 31.75 2.27
4856 5523 7.003648 GCTTATCATTTTTCGTGCAACTTTTC 58.996 34.615 0.00 0.00 31.75 2.29
5018 5686 9.308318 CTTCCTTAAGCTTCTTGATCTACTTAC 57.692 37.037 0.00 0.00 0.00 2.34
5118 5786 1.546323 CCTGATGAACAGCTGGTGGTT 60.546 52.381 19.93 2.30 44.52 3.67
5235 5903 5.408356 TCTTTTATCTCCTAACGTGACTGC 58.592 41.667 0.00 0.00 0.00 4.40
5314 5982 3.845178 TGTCAATACGCAGGTAACAGAG 58.155 45.455 0.00 0.00 41.41 3.35
5456 6125 9.555411 TCCTACTCTTTACCCATGCATATATAA 57.445 33.333 0.00 0.00 0.00 0.98
5546 6217 2.164624 GTCAGATAGGCGTTCTCAGTGT 59.835 50.000 0.00 0.00 0.00 3.55
5604 6276 8.273780 ACAGTTGATTCTGAAACCTAATGATC 57.726 34.615 0.00 0.00 38.63 2.92
5702 6374 6.469410 TGTTGATAGGTCCTTGACGTTAATT 58.531 36.000 0.00 0.00 32.77 1.40
5706 6378 4.618920 AGGTCCTTGACGTTAATTGTCT 57.381 40.909 10.86 0.00 37.26 3.41
5827 6499 4.163078 ACTGCATGTAGGCTATGACTTCTT 59.837 41.667 15.65 0.00 34.04 2.52
5915 6780 6.747280 CGTTAATGGTCATCCTGTGAAAAATC 59.253 38.462 0.00 0.00 38.90 2.17
6010 6875 6.954102 AGGTAAGCCCTGATTTCTTTATTTGT 59.046 34.615 0.00 0.00 44.08 2.83
6119 6985 4.771590 ACCAGTACTTCGTCGTGATTAA 57.228 40.909 0.00 0.00 0.00 1.40
6125 6991 6.745907 CAGTACTTCGTCGTGATTAATCAGAA 59.254 38.462 18.47 15.75 37.51 3.02
6143 7009 6.020971 TCAGAATTTCTCAGTAACGCTACA 57.979 37.500 0.00 0.00 0.00 2.74
6196 7062 4.100189 ACAAGTAGCCTCATACTGGATGTC 59.900 45.833 0.00 0.00 36.14 3.06
6197 7063 3.916035 AGTAGCCTCATACTGGATGTCA 58.084 45.455 0.00 0.00 34.68 3.58
6320 7186 0.033208 AATTGATGATGCGGGGGTGT 60.033 50.000 0.00 0.00 0.00 4.16
6322 7188 0.964860 TTGATGATGCGGGGGTGTTG 60.965 55.000 0.00 0.00 0.00 3.33
6401 7267 6.478016 AGCTCTTCTTTTCTTGCAAAATCAAC 59.522 34.615 0.00 0.00 0.00 3.18
6491 7357 0.882927 TCCTGGAGACAAAAACCGCG 60.883 55.000 0.00 0.00 42.06 6.46
6506 7372 2.125673 GCGAAGGCTGCTACCGAA 60.126 61.111 0.00 0.00 35.83 4.30
6530 7396 0.867746 TTCTGACAACGCACTGCATC 59.132 50.000 1.11 0.00 0.00 3.91
6579 7445 2.289002 GCCTAATGGAGAACAAGATGCG 59.711 50.000 0.00 0.00 34.57 4.73
6670 7537 1.141657 TGAGCTTATGCATCCAGACCC 59.858 52.381 0.19 0.00 42.74 4.46
6673 7540 1.419387 GCTTATGCATCCAGACCCTCT 59.581 52.381 0.19 0.00 39.41 3.69
6783 7650 7.172875 AGCATTAGTCATCATGAAAGTGATAGC 59.827 37.037 0.00 0.00 36.72 2.97
6798 7665 8.500753 AAAGTGATAGCGGTTAATTGATAACA 57.499 30.769 0.00 0.00 44.77 2.41
6871 7739 1.413812 CATATTTTTGCCTCAGCCCCC 59.586 52.381 0.00 0.00 38.69 5.40
6892 7760 3.142951 CACCGAAAAGTCCAATACACCA 58.857 45.455 0.00 0.00 0.00 4.17
6950 7818 0.462759 CCCATCTGCTCCCTCGTTTC 60.463 60.000 0.00 0.00 0.00 2.78
6952 7820 0.539051 CATCTGCTCCCTCGTTTCCT 59.461 55.000 0.00 0.00 0.00 3.36
6980 7848 3.080641 CTGGGTGCATGAGGTGGA 58.919 61.111 0.00 0.00 0.00 4.02
6988 7856 4.195334 ATGAGGTGGATGCCGGCC 62.195 66.667 26.77 9.46 0.00 6.13
6993 7914 3.810896 GTGGATGCCGGCCGTTTC 61.811 66.667 26.77 16.84 0.00 2.78
7012 7933 1.016130 CGGCTTCGTCTTGTCATGCT 61.016 55.000 0.00 0.00 0.00 3.79
7014 7935 0.179205 GCTTCGTCTTGTCATGCTGC 60.179 55.000 0.00 0.00 0.00 5.25
7015 7936 0.094216 CTTCGTCTTGTCATGCTGCG 59.906 55.000 0.00 0.00 0.00 5.18
7016 7937 0.599991 TTCGTCTTGTCATGCTGCGT 60.600 50.000 0.00 0.00 0.00 5.24
7017 7938 0.599991 TCGTCTTGTCATGCTGCGTT 60.600 50.000 0.00 0.00 0.00 4.84
7019 7940 1.201812 CGTCTTGTCATGCTGCGTTAC 60.202 52.381 0.00 0.00 0.00 2.50
7020 7941 2.069273 GTCTTGTCATGCTGCGTTACT 58.931 47.619 7.60 0.00 0.00 2.24
7021 7942 2.092838 GTCTTGTCATGCTGCGTTACTC 59.907 50.000 7.60 0.00 0.00 2.59
7022 7943 1.059692 CTTGTCATGCTGCGTTACTCG 59.940 52.381 7.60 0.00 43.12 4.18
7103 8090 4.436998 CTGGTGGCTCGTCCCGTC 62.437 72.222 0.00 0.00 0.00 4.79
7203 8205 1.816863 TTGTCGTCCTGGTCAGCTCC 61.817 60.000 0.00 0.00 0.00 4.70
7205 8207 1.979155 TCGTCCTGGTCAGCTCCTG 60.979 63.158 0.00 0.00 0.00 3.86
7221 8234 3.127721 GCTCCTGCTGGTGTATCTTTTTC 59.872 47.826 9.73 0.00 36.03 2.29
7223 8236 4.579869 TCCTGCTGGTGTATCTTTTTCTC 58.420 43.478 9.73 0.00 34.23 2.87
7256 8279 2.363359 GGATCAACAAGATTGGGATGGC 59.637 50.000 0.00 0.00 37.00 4.40
7304 8347 0.542333 TTGGTTCACGAGTTGGGTCA 59.458 50.000 0.00 0.00 0.00 4.02
7311 8354 0.249911 ACGAGTTGGGTCAGCTGTTC 60.250 55.000 14.67 8.29 0.00 3.18
7379 8422 2.283821 TGGATTGGTTGGCTGGCC 60.284 61.111 4.43 4.43 0.00 5.36
7437 8480 0.109723 TGTACTGCACCCACTTTCCC 59.890 55.000 0.00 0.00 0.00 3.97
7460 8503 3.963428 AGGTTGAAGCACTAGTACTGG 57.037 47.619 5.39 4.89 0.00 4.00
7461 8504 2.028020 AGGTTGAAGCACTAGTACTGGC 60.028 50.000 5.39 6.77 0.00 4.85
7555 8598 0.971386 TTGAACTGGACCGAGTACCC 59.029 55.000 0.00 0.00 0.00 3.69
7583 8626 1.611006 TGCCTGCTCGAGAATAGCTAG 59.389 52.381 18.75 1.73 40.73 3.42
7584 8627 1.611491 GCCTGCTCGAGAATAGCTAGT 59.389 52.381 18.75 0.00 40.73 2.57
7585 8628 2.814919 GCCTGCTCGAGAATAGCTAGTA 59.185 50.000 18.75 0.00 40.73 1.82
7586 8629 3.365565 GCCTGCTCGAGAATAGCTAGTAC 60.366 52.174 18.75 0.00 40.73 2.73
7593 8661 1.536331 AGAATAGCTAGTACCGAGCGC 59.464 52.381 0.00 0.00 44.98 5.92
7619 8687 3.402110 CATTTCGCCACCATAGATAGCA 58.598 45.455 0.00 0.00 0.00 3.49
7621 8689 0.318441 TCGCCACCATAGATAGCAGC 59.682 55.000 0.00 0.00 0.00 5.25
7623 8691 1.805869 GCCACCATAGATAGCAGCAG 58.194 55.000 0.00 0.00 0.00 4.24
7624 8692 1.071385 GCCACCATAGATAGCAGCAGT 59.929 52.381 0.00 0.00 0.00 4.40
7625 8693 2.300152 GCCACCATAGATAGCAGCAGTA 59.700 50.000 0.00 0.00 0.00 2.74
7626 8694 3.862642 GCCACCATAGATAGCAGCAGTAC 60.863 52.174 0.00 0.00 0.00 2.73
7627 8695 3.321968 CCACCATAGATAGCAGCAGTACA 59.678 47.826 0.00 0.00 0.00 2.90
7630 8698 6.328714 CACCATAGATAGCAGCAGTACATAG 58.671 44.000 0.00 0.00 0.00 2.23
7631 8699 6.013379 ACCATAGATAGCAGCAGTACATAGT 58.987 40.000 0.00 0.00 0.00 2.12
7632 8700 7.121315 CACCATAGATAGCAGCAGTACATAGTA 59.879 40.741 0.00 0.00 0.00 1.82
7633 8701 7.338196 ACCATAGATAGCAGCAGTACATAGTAG 59.662 40.741 0.00 0.00 0.00 2.57
7645 8713 6.570692 CAGTACATAGTAGAACCGTGGAAAT 58.429 40.000 0.00 0.00 0.00 2.17
7649 8717 1.274167 AGTAGAACCGTGGAAATCGCA 59.726 47.619 0.00 0.00 0.00 5.10
7650 8718 1.659098 GTAGAACCGTGGAAATCGCAG 59.341 52.381 0.00 0.00 0.00 5.18
7660 8728 1.000938 GGAAATCGCAGGAATGCCATC 60.001 52.381 0.00 0.00 36.29 3.51
7726 8794 0.373716 CGTACGTACGTACTCCCACC 59.626 60.000 40.05 22.55 46.22 4.61
7727 8795 0.733150 GTACGTACGTACTCCCACCC 59.267 60.000 38.40 18.70 45.30 4.61
7728 8796 0.326595 TACGTACGTACTCCCACCCA 59.673 55.000 23.60 0.00 0.00 4.51
7729 8797 1.244019 ACGTACGTACTCCCACCCAC 61.244 60.000 21.41 0.00 0.00 4.61
7731 8799 0.813821 GTACGTACTCCCACCCACTC 59.186 60.000 18.47 0.00 0.00 3.51
7732 8800 0.323725 TACGTACTCCCACCCACTCC 60.324 60.000 0.00 0.00 0.00 3.85
7734 8802 1.189524 CGTACTCCCACCCACTCCAA 61.190 60.000 0.00 0.00 0.00 3.53
7736 8804 0.838987 TACTCCCACCCACTCCAACC 60.839 60.000 0.00 0.00 0.00 3.77
7738 8806 1.698116 TCCCACCCACTCCAACCAA 60.698 57.895 0.00 0.00 0.00 3.67
7739 8807 1.071314 TCCCACCCACTCCAACCAAT 61.071 55.000 0.00 0.00 0.00 3.16
7740 8808 0.899717 CCCACCCACTCCAACCAATG 60.900 60.000 0.00 0.00 0.00 2.82
7741 8809 0.178964 CCACCCACTCCAACCAATGT 60.179 55.000 0.00 0.00 0.00 2.71
7742 8810 1.703411 CACCCACTCCAACCAATGTT 58.297 50.000 0.00 0.00 34.14 2.71
7743 8811 1.613437 CACCCACTCCAACCAATGTTC 59.387 52.381 0.00 0.00 30.42 3.18
7744 8812 1.499007 ACCCACTCCAACCAATGTTCT 59.501 47.619 0.00 0.00 30.42 3.01
7745 8813 2.091333 ACCCACTCCAACCAATGTTCTT 60.091 45.455 0.00 0.00 30.42 2.52
7746 8814 2.558359 CCCACTCCAACCAATGTTCTTC 59.442 50.000 0.00 0.00 30.42 2.87
7747 8815 3.490348 CCACTCCAACCAATGTTCTTCT 58.510 45.455 0.00 0.00 30.42 2.85
7748 8816 3.503748 CCACTCCAACCAATGTTCTTCTC 59.496 47.826 0.00 0.00 30.42 2.87
7749 8817 4.392940 CACTCCAACCAATGTTCTTCTCT 58.607 43.478 0.00 0.00 30.42 3.10
7750 8818 4.823989 CACTCCAACCAATGTTCTTCTCTT 59.176 41.667 0.00 0.00 30.42 2.85
7751 8819 5.997746 CACTCCAACCAATGTTCTTCTCTTA 59.002 40.000 0.00 0.00 30.42 2.10
7752 8820 6.656693 CACTCCAACCAATGTTCTTCTCTTAT 59.343 38.462 0.00 0.00 30.42 1.73
7753 8821 7.824289 CACTCCAACCAATGTTCTTCTCTTATA 59.176 37.037 0.00 0.00 30.42 0.98
7754 8822 8.383175 ACTCCAACCAATGTTCTTCTCTTATAA 58.617 33.333 0.00 0.00 30.42 0.98
7755 8823 9.231297 CTCCAACCAATGTTCTTCTCTTATAAA 57.769 33.333 0.00 0.00 30.42 1.40
7756 8824 9.581289 TCCAACCAATGTTCTTCTCTTATAAAA 57.419 29.630 0.00 0.00 30.42 1.52
7759 8827 9.893305 AACCAATGTTCTTCTCTTATAAAAACG 57.107 29.630 0.00 0.00 0.00 3.60
7760 8828 9.280174 ACCAATGTTCTTCTCTTATAAAAACGA 57.720 29.630 0.00 0.00 0.00 3.85
7764 8832 9.807386 ATGTTCTTCTCTTATAAAAACGAAACG 57.193 29.630 0.00 0.00 0.00 3.60
7765 8833 7.795272 TGTTCTTCTCTTATAAAAACGAAACGC 59.205 33.333 0.00 0.00 0.00 4.84
7767 8835 6.363088 TCTTCTCTTATAAAAACGAAACGCGA 59.637 34.615 15.93 0.00 44.57 5.87
7768 8836 6.636666 TCTCTTATAAAAACGAAACGCGAT 57.363 33.333 15.93 0.00 44.57 4.58
7769 8837 7.739022 TCTCTTATAAAAACGAAACGCGATA 57.261 32.000 15.93 0.00 44.57 2.92
7770 8838 7.603515 TCTCTTATAAAAACGAAACGCGATAC 58.396 34.615 15.93 1.68 44.57 2.24
7771 8839 7.485913 TCTCTTATAAAAACGAAACGCGATACT 59.514 33.333 15.93 0.00 44.57 2.12
7772 8840 7.952339 TCTTATAAAAACGAAACGCGATACTT 58.048 30.769 15.93 0.00 44.57 2.24
7773 8841 8.434661 TCTTATAAAAACGAAACGCGATACTTT 58.565 29.630 15.93 1.61 44.57 2.66
7774 8842 8.931905 TTATAAAAACGAAACGCGATACTTTT 57.068 26.923 15.93 12.52 44.57 2.27
7775 8843 5.534365 AAAAACGAAACGCGATACTTTTG 57.466 34.783 15.93 9.46 44.57 2.44
7776 8844 4.455917 AAACGAAACGCGATACTTTTGA 57.544 36.364 15.93 0.00 44.57 2.69
7777 8845 3.429061 ACGAAACGCGATACTTTTGAC 57.571 42.857 15.93 0.00 44.57 3.18
7778 8846 2.160065 ACGAAACGCGATACTTTTGACG 60.160 45.455 15.93 5.92 44.57 4.35
7779 8847 2.754478 GAAACGCGATACTTTTGACGG 58.246 47.619 15.93 0.00 0.00 4.79
7780 8848 0.441145 AACGCGATACTTTTGACGGC 59.559 50.000 15.93 0.00 0.00 5.68
7781 8849 1.347221 CGCGATACTTTTGACGGCC 59.653 57.895 0.00 0.00 0.00 6.13
7782 8850 1.355796 CGCGATACTTTTGACGGCCA 61.356 55.000 0.00 0.00 0.00 5.36
7783 8851 0.373716 GCGATACTTTTGACGGCCAG 59.626 55.000 2.24 0.00 0.00 4.85
7784 8852 1.006832 CGATACTTTTGACGGCCAGG 58.993 55.000 2.24 0.00 0.00 4.45
7785 8853 1.379527 GATACTTTTGACGGCCAGGG 58.620 55.000 2.24 0.00 0.00 4.45
7786 8854 0.034477 ATACTTTTGACGGCCAGGGG 60.034 55.000 2.24 0.00 0.00 4.79
7787 8855 2.132089 TACTTTTGACGGCCAGGGGG 62.132 60.000 2.24 0.00 37.18 5.40
7801 8869 4.745116 GGGGGAAAAGGAGTCTGC 57.255 61.111 0.00 0.00 0.00 4.26
7802 8870 2.079326 GGGGGAAAAGGAGTCTGCT 58.921 57.895 0.00 0.00 0.00 4.24
7803 8871 0.405973 GGGGGAAAAGGAGTCTGCTT 59.594 55.000 0.00 0.00 0.00 3.91
7804 8872 1.614583 GGGGGAAAAGGAGTCTGCTTC 60.615 57.143 7.11 0.00 0.00 3.86
7805 8873 1.443802 GGGAAAAGGAGTCTGCTTCG 58.556 55.000 7.11 0.00 0.00 3.79
7806 8874 1.270893 GGGAAAAGGAGTCTGCTTCGT 60.271 52.381 7.11 0.00 0.00 3.85
7807 8875 2.070028 GGAAAAGGAGTCTGCTTCGTC 58.930 52.381 7.11 7.92 0.00 4.20
7808 8876 2.289133 GGAAAAGGAGTCTGCTTCGTCT 60.289 50.000 7.11 0.00 0.00 4.18
7809 8877 3.056749 GGAAAAGGAGTCTGCTTCGTCTA 60.057 47.826 7.11 0.00 0.00 2.59
7810 8878 3.859411 AAAGGAGTCTGCTTCGTCTAG 57.141 47.619 7.11 0.00 0.00 2.43
7811 8879 1.757682 AGGAGTCTGCTTCGTCTAGG 58.242 55.000 0.00 0.00 0.00 3.02
7812 8880 0.741915 GGAGTCTGCTTCGTCTAGGG 59.258 60.000 0.00 0.00 0.00 3.53
7813 8881 1.465794 GAGTCTGCTTCGTCTAGGGT 58.534 55.000 0.00 0.00 0.00 4.34
7814 8882 1.819903 GAGTCTGCTTCGTCTAGGGTT 59.180 52.381 0.00 0.00 0.00 4.11
7815 8883 2.231721 GAGTCTGCTTCGTCTAGGGTTT 59.768 50.000 0.00 0.00 0.00 3.27
7816 8884 2.633481 AGTCTGCTTCGTCTAGGGTTTT 59.367 45.455 0.00 0.00 0.00 2.43
7817 8885 3.830755 AGTCTGCTTCGTCTAGGGTTTTA 59.169 43.478 0.00 0.00 0.00 1.52
7818 8886 4.082136 AGTCTGCTTCGTCTAGGGTTTTAG 60.082 45.833 0.00 0.00 0.00 1.85
7819 8887 2.930682 CTGCTTCGTCTAGGGTTTTAGC 59.069 50.000 0.00 0.00 0.00 3.09
7820 8888 1.925185 GCTTCGTCTAGGGTTTTAGCG 59.075 52.381 0.00 0.00 0.00 4.26
7821 8889 2.416431 GCTTCGTCTAGGGTTTTAGCGA 60.416 50.000 0.00 0.00 31.94 4.93
7822 8890 3.737355 GCTTCGTCTAGGGTTTTAGCGAT 60.737 47.826 0.00 0.00 33.02 4.58
7823 8891 3.431922 TCGTCTAGGGTTTTAGCGATG 57.568 47.619 0.00 0.00 30.23 3.84
7824 8892 2.100252 TCGTCTAGGGTTTTAGCGATGG 59.900 50.000 0.00 0.00 30.23 3.51
7825 8893 2.802057 CGTCTAGGGTTTTAGCGATGGG 60.802 54.545 0.00 0.00 0.00 4.00
7826 8894 1.140252 TCTAGGGTTTTAGCGATGGGC 59.860 52.381 0.00 0.00 44.05 5.36
7859 8927 4.038080 CCGCCAAAACCTGCCGAC 62.038 66.667 0.00 0.00 0.00 4.79
7860 8928 4.383602 CGCCAAAACCTGCCGACG 62.384 66.667 0.00 0.00 0.00 5.12
7861 8929 4.038080 GCCAAAACCTGCCGACGG 62.038 66.667 10.29 10.29 0.00 4.79
7863 8931 2.281208 CAAAACCTGCCGACGGGA 60.281 61.111 17.22 12.84 46.41 5.14
7864 8932 2.032071 AAAACCTGCCGACGGGAG 59.968 61.111 26.95 26.95 46.41 4.30
7865 8933 4.699522 AAACCTGCCGACGGGAGC 62.700 66.667 28.29 8.76 46.41 4.70
7869 8937 4.514577 CTGCCGACGGGAGCGAAT 62.515 66.667 23.01 0.00 33.72 3.34
7870 8938 4.508128 TGCCGACGGGAGCGAATC 62.508 66.667 17.22 0.00 34.06 2.52
7873 8941 3.884350 CGACGGGAGCGAATCGGA 61.884 66.667 4.35 0.00 0.00 4.55
7874 8942 2.728817 GACGGGAGCGAATCGGAT 59.271 61.111 4.35 0.00 0.00 4.18
7875 8943 1.371881 GACGGGAGCGAATCGGATC 60.372 63.158 4.35 0.00 0.00 3.36
7876 8944 2.429236 CGGGAGCGAATCGGATCG 60.429 66.667 4.35 6.43 45.41 3.69
7895 8963 4.857251 CGGGAGGAATCCTTTCGG 57.143 61.111 2.09 0.15 31.76 4.30
7896 8964 1.146263 CGGGAGGAATCCTTTCGGG 59.854 63.158 2.09 0.00 31.76 5.14
7897 8965 1.152943 GGGAGGAATCCTTTCGGGC 60.153 63.158 2.09 0.00 31.76 6.13
7898 8966 1.152943 GGAGGAATCCTTTCGGGCC 60.153 63.158 2.09 0.00 31.76 5.80
7899 8967 1.607612 GAGGAATCCTTTCGGGCCA 59.392 57.895 2.09 0.00 31.76 5.36
7900 8968 0.748367 GAGGAATCCTTTCGGGCCAC 60.748 60.000 2.09 0.00 31.76 5.01
7901 8969 2.112815 GGAATCCTTTCGGGCCACG 61.113 63.158 4.39 6.13 46.11 4.94
7911 8979 2.189521 GGGCCACGATTCCGATGT 59.810 61.111 4.39 0.00 39.50 3.06
7912 8980 1.444250 GGGCCACGATTCCGATGTA 59.556 57.895 4.39 0.00 39.50 2.29
7913 8981 0.878961 GGGCCACGATTCCGATGTAC 60.879 60.000 4.39 0.00 39.50 2.90
7914 8982 0.179094 GGCCACGATTCCGATGTACA 60.179 55.000 0.00 0.00 39.50 2.90
7915 8983 0.928229 GCCACGATTCCGATGTACAC 59.072 55.000 0.00 0.00 39.50 2.90
7916 8984 1.197055 CCACGATTCCGATGTACACG 58.803 55.000 0.00 4.23 39.50 4.49
7924 8992 2.184385 CCGATGTACACGGTGTCTAC 57.816 55.000 18.43 11.97 44.57 2.59
7925 8993 1.530441 CCGATGTACACGGTGTCTACG 60.530 57.143 18.43 17.34 44.57 3.51
7926 8994 1.394572 CGATGTACACGGTGTCTACGA 59.605 52.381 18.43 0.00 34.93 3.43
7927 8995 2.536329 CGATGTACACGGTGTCTACGAG 60.536 54.545 18.43 2.83 34.93 4.18
7928 8996 1.882912 TGTACACGGTGTCTACGAGT 58.117 50.000 18.43 0.00 38.59 4.18
7929 8997 1.800586 TGTACACGGTGTCTACGAGTC 59.199 52.381 18.43 0.82 36.59 3.36
7930 8998 2.072298 GTACACGGTGTCTACGAGTCT 58.928 52.381 18.43 0.00 36.59 3.24
7931 8999 2.462456 ACACGGTGTCTACGAGTCTA 57.538 50.000 8.21 0.00 29.45 2.59
7932 9000 2.771089 ACACGGTGTCTACGAGTCTAA 58.229 47.619 8.21 0.00 29.45 2.10
7933 9001 2.740981 ACACGGTGTCTACGAGTCTAAG 59.259 50.000 8.21 0.00 29.45 2.18
7934 9002 1.736681 ACGGTGTCTACGAGTCTAAGC 59.263 52.381 0.00 0.00 34.93 3.09
7935 9003 1.063764 CGGTGTCTACGAGTCTAAGCC 59.936 57.143 0.00 0.00 0.00 4.35
7936 9004 1.063764 GGTGTCTACGAGTCTAAGCCG 59.936 57.143 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 357 6.885952 TTCTTCCGGTTCAAAATTATCACA 57.114 33.333 0.00 0.00 0.00 3.58
108 394 6.596497 ACACTTATGTTACCGAGGGTATTTTG 59.404 38.462 0.00 0.00 38.05 2.44
111 397 5.945144 ACACTTATGTTACCGAGGGTATT 57.055 39.130 0.00 0.00 38.05 1.89
158 444 4.584743 TCATACATGAGTTATCAGCTCCGT 59.415 41.667 0.00 0.00 39.29 4.69
238 528 5.385509 AAAACCATGCTAGTTACGCAAAT 57.614 34.783 0.00 0.00 41.26 2.32
270 561 3.491267 GCGCATAAGTTATCAGGTCTGTC 59.509 47.826 0.30 0.00 0.00 3.51
295 586 3.073062 CCGAATCAGAATTATCAGGGGGT 59.927 47.826 0.00 0.00 0.00 4.95
350 644 5.875359 TGTGTGTGGCGTGTAAATTATCATA 59.125 36.000 0.00 0.00 0.00 2.15
437 747 6.819947 AGTTACCTAGAATTTATTCGGGGT 57.180 37.500 18.66 18.66 43.35 4.95
500 825 7.812191 GGATTTATGTACTGCACAATTTTCACA 59.188 33.333 0.00 0.00 41.55 3.58
557 883 9.614792 GAGACATTTGTTTTCTGGGTATAGTAT 57.385 33.333 0.00 0.00 0.00 2.12
566 892 6.973843 TCAGATTGAGACATTTGTTTTCTGG 58.026 36.000 0.00 0.00 31.33 3.86
567 893 8.294577 TCATCAGATTGAGACATTTGTTTTCTG 58.705 33.333 0.00 0.00 0.00 3.02
589 915 6.428771 ACTCGGTCTAGATTAAGCTAGTCATC 59.571 42.308 23.39 13.82 39.10 2.92
592 918 5.049267 CCACTCGGTCTAGATTAAGCTAGTC 60.049 48.000 23.39 18.75 39.10 2.59
621 947 1.613925 CTTGATAGCCTGCGGTAGCTA 59.386 52.381 6.04 6.04 45.17 3.32
724 1064 3.315470 CGTATGATCCACTTCTCTCCGAA 59.685 47.826 0.00 0.00 0.00 4.30
731 1071 2.695666 CAGGTCCGTATGATCCACTTCT 59.304 50.000 0.00 0.00 0.00 2.85
749 1089 2.148916 TTGACTGTGCTAACGACAGG 57.851 50.000 6.15 0.00 44.39 4.00
756 1096 5.339990 GCTTGTTCTTTTTGACTGTGCTAA 58.660 37.500 0.00 0.00 0.00 3.09
759 1099 2.860136 GGCTTGTTCTTTTTGACTGTGC 59.140 45.455 0.00 0.00 0.00 4.57
763 1103 3.365472 AGTGGGCTTGTTCTTTTTGACT 58.635 40.909 0.00 0.00 0.00 3.41
764 1104 3.801114 AGTGGGCTTGTTCTTTTTGAC 57.199 42.857 0.00 0.00 0.00 3.18
765 1105 3.317993 GCTAGTGGGCTTGTTCTTTTTGA 59.682 43.478 0.00 0.00 0.00 2.69
766 1106 3.552890 GGCTAGTGGGCTTGTTCTTTTTG 60.553 47.826 0.00 0.00 37.53 2.44
767 1107 2.628178 GGCTAGTGGGCTTGTTCTTTTT 59.372 45.455 0.00 0.00 37.53 1.94
768 1108 2.239400 GGCTAGTGGGCTTGTTCTTTT 58.761 47.619 0.00 0.00 37.53 2.27
769 1109 1.144913 TGGCTAGTGGGCTTGTTCTTT 59.855 47.619 0.84 0.00 41.48 2.52
770 1110 0.771127 TGGCTAGTGGGCTTGTTCTT 59.229 50.000 0.84 0.00 41.48 2.52
771 1111 0.326264 CTGGCTAGTGGGCTTGTTCT 59.674 55.000 0.84 0.00 41.48 3.01
772 1112 0.678048 CCTGGCTAGTGGGCTTGTTC 60.678 60.000 0.84 0.00 41.48 3.18
773 1113 1.380302 CCTGGCTAGTGGGCTTGTT 59.620 57.895 0.84 0.00 41.48 2.83
774 1114 3.081554 CCTGGCTAGTGGGCTTGT 58.918 61.111 0.84 0.00 41.48 3.16
775 1115 2.439156 GCCTGGCTAGTGGGCTTG 60.439 66.667 12.43 0.00 42.31 4.01
779 1119 4.845580 CGCAGCCTGGCTAGTGGG 62.846 72.222 22.90 14.67 36.40 4.61
797 1137 2.978298 TAGAGGATCGGACGGGCTGG 62.978 65.000 0.00 0.00 42.67 4.85
798 1138 1.107538 TTAGAGGATCGGACGGGCTG 61.108 60.000 0.00 0.00 42.67 4.85
799 1139 0.396695 TTTAGAGGATCGGACGGGCT 60.397 55.000 0.00 0.00 42.67 5.19
800 1140 0.462789 TTTTAGAGGATCGGACGGGC 59.537 55.000 0.00 0.00 42.67 6.13
801 1141 2.973694 TTTTTAGAGGATCGGACGGG 57.026 50.000 0.00 0.00 42.67 5.28
818 1158 3.731431 AGGGGGAGGAAAACAAGTTTTT 58.269 40.909 11.75 0.00 42.26 1.94
819 1159 3.414759 AGGGGGAGGAAAACAAGTTTT 57.585 42.857 10.43 10.43 44.59 2.43
820 1160 4.546224 TTAGGGGGAGGAAAACAAGTTT 57.454 40.909 0.00 0.00 0.00 2.66
821 1161 4.546224 TTTAGGGGGAGGAAAACAAGTT 57.454 40.909 0.00 0.00 0.00 2.66
822 1162 4.546224 TTTTAGGGGGAGGAAAACAAGT 57.454 40.909 0.00 0.00 0.00 3.16
843 1183 8.325787 AGGGTAAAATGAGGAAAACAAGTTTTT 58.674 29.630 11.75 0.00 42.26 1.94
844 1184 7.857456 AGGGTAAAATGAGGAAAACAAGTTTT 58.143 30.769 10.43 10.43 44.59 2.43
845 1185 7.432148 AGGGTAAAATGAGGAAAACAAGTTT 57.568 32.000 0.00 0.00 0.00 2.66
846 1186 8.002459 TCTAGGGTAAAATGAGGAAAACAAGTT 58.998 33.333 0.00 0.00 0.00 2.66
847 1187 7.523415 TCTAGGGTAAAATGAGGAAAACAAGT 58.477 34.615 0.00 0.00 0.00 3.16
848 1188 7.996098 TCTAGGGTAAAATGAGGAAAACAAG 57.004 36.000 0.00 0.00 0.00 3.16
849 1189 8.770010 TTTCTAGGGTAAAATGAGGAAAACAA 57.230 30.769 0.00 0.00 0.00 2.83
850 1190 8.770010 TTTTCTAGGGTAAAATGAGGAAAACA 57.230 30.769 0.00 0.00 30.10 2.83
873 1213 8.185003 CTCGAAAATGAGGAAAACAAGTTTTT 57.815 30.769 11.75 0.00 42.26 1.94
902 1242 1.739929 CGCATACGGCACTGGTTGA 60.740 57.895 0.00 0.00 45.17 3.18
1635 1998 5.016051 ACTGGACAAGCTATGTGATACAG 57.984 43.478 6.31 10.20 44.12 2.74
1680 2047 1.016627 TGCATTGGAGAAGTATGCGC 58.983 50.000 0.00 0.00 45.80 6.09
1705 2072 0.638292 TAGTAATCGGGGGAGGTGGT 59.362 55.000 0.00 0.00 0.00 4.16
1708 2081 0.552848 TCGTAGTAATCGGGGGAGGT 59.447 55.000 0.00 0.00 0.00 3.85
1718 2091 4.560128 CTGTGCCATGCTATCGTAGTAAT 58.440 43.478 0.00 0.00 0.00 1.89
1754 2127 1.962807 CCAACATGCTGAAGTTCCCAA 59.037 47.619 0.00 0.00 0.00 4.12
1772 2145 3.360867 TGAAAGTTCAAAGGAAGCACCA 58.639 40.909 2.96 0.00 36.18 4.17
1781 2154 5.894807 ACTCCACAACATGAAAGTTCAAAG 58.105 37.500 0.00 0.00 41.13 2.77
1929 2562 8.947055 AAACAATTGAGCAAACATAGAAGTTT 57.053 26.923 13.59 0.00 42.10 2.66
1946 2579 6.385537 GCTGATGCTAAGACAAAACAATTG 57.614 37.500 3.24 3.24 36.03 2.32
2045 2678 1.325355 TTCCCCGAGCTAGAATACCG 58.675 55.000 0.00 0.00 0.00 4.02
2160 2793 6.524734 ACTCATCATCACTGACAGTTAACAA 58.475 36.000 5.04 0.00 33.22 2.83
2400 3033 9.291664 GGTTATGTTCGAATCTAGCTATCATAC 57.708 37.037 0.00 0.00 0.00 2.39
2488 3121 3.106827 TGCATCTATCTGTCCACAGGAA 58.893 45.455 6.87 0.00 43.91 3.36
2569 3203 6.791887 TGTTTGAGAGACTGAAAAGCTATG 57.208 37.500 0.00 0.00 0.00 2.23
2820 3454 5.530915 CCTATAAAATCATCCGGCAAGTTCA 59.469 40.000 0.00 0.00 0.00 3.18
2828 3462 7.687941 AAACTATGCCTATAAAATCATCCGG 57.312 36.000 0.00 0.00 0.00 5.14
2837 3471 8.582657 TGCCAAGTAAAAACTATGCCTATAAA 57.417 30.769 0.00 0.00 0.00 1.40
2857 3491 1.375396 CCGGTCAGATCGTTGCCAA 60.375 57.895 1.58 0.00 0.00 4.52
2861 3495 1.153628 GGGACCGGTCAGATCGTTG 60.154 63.158 34.40 0.00 0.00 4.10
2862 3496 0.033796 TAGGGACCGGTCAGATCGTT 60.034 55.000 34.40 13.96 0.00 3.85
2937 3574 7.038017 TGGACATGAAATAAGAGGAGAGAAAGT 60.038 37.037 0.00 0.00 0.00 2.66
2941 3578 5.960811 ACTGGACATGAAATAAGAGGAGAGA 59.039 40.000 0.00 0.00 0.00 3.10
2942 3579 6.047870 CACTGGACATGAAATAAGAGGAGAG 58.952 44.000 0.00 0.00 0.00 3.20
2944 3581 5.121811 CCACTGGACATGAAATAAGAGGAG 58.878 45.833 0.00 0.00 0.00 3.69
2946 3583 4.848357 ACCACTGGACATGAAATAAGAGG 58.152 43.478 0.71 0.53 0.00 3.69
2947 3584 4.568359 CGACCACTGGACATGAAATAAGAG 59.432 45.833 0.71 0.00 0.00 2.85
2948 3585 4.503910 CGACCACTGGACATGAAATAAGA 58.496 43.478 0.71 0.00 0.00 2.10
2949 3586 3.623060 CCGACCACTGGACATGAAATAAG 59.377 47.826 0.71 0.00 0.00 1.73
2950 3587 3.262151 TCCGACCACTGGACATGAAATAA 59.738 43.478 0.71 0.00 0.00 1.40
2951 3588 2.835156 TCCGACCACTGGACATGAAATA 59.165 45.455 0.71 0.00 0.00 1.40
2952 3589 1.628340 TCCGACCACTGGACATGAAAT 59.372 47.619 0.71 0.00 0.00 2.17
3091 3728 5.841957 ATAATTGACAGGTTGCAGAATCC 57.158 39.130 0.00 0.00 0.00 3.01
3102 3739 8.680903 AGAATGACTAAGCAAATAATTGACAGG 58.319 33.333 0.00 0.00 38.94 4.00
3118 3755 8.731275 TGAACAAACTGAAAGAGAATGACTAA 57.269 30.769 0.00 0.00 37.43 2.24
3162 3799 2.216940 CACAGCAATCAAAACAAGTGCG 59.783 45.455 0.00 0.00 42.22 5.34
3168 3805 5.581126 AAAGAGACACAGCAATCAAAACA 57.419 34.783 0.00 0.00 0.00 2.83
3169 3806 5.460091 GGAAAAGAGACACAGCAATCAAAAC 59.540 40.000 0.00 0.00 0.00 2.43
3179 3826 5.924475 AACAATACGGAAAAGAGACACAG 57.076 39.130 0.00 0.00 0.00 3.66
3309 3959 6.793349 AGCAAATGCATAAGATCAAAGAGAC 58.207 36.000 8.28 0.00 45.16 3.36
3351 4001 6.699575 AGCCTGAAATAATATCGCAAAAGT 57.300 33.333 0.00 0.00 0.00 2.66
3655 4307 6.942976 AGAAGACCGTGGAACTGATAATAAA 58.057 36.000 0.00 0.00 31.75 1.40
3672 4324 4.283212 AGGCATCTAGAGCAATAGAAGACC 59.717 45.833 13.76 4.84 35.48 3.85
3760 4412 1.535462 GAACCGTCATTTGACACCAGG 59.465 52.381 11.02 6.24 44.99 4.45
3841 4493 1.401318 TTGGCCAGCTGCAAACATGT 61.401 50.000 8.66 0.00 43.89 3.21
3938 4590 6.625081 GCCAATATAAACCCCGCAAGAATATC 60.625 42.308 0.00 0.00 43.02 1.63
4388 5046 5.364157 ACAGCCTAGGAGTACAAGGATTAAG 59.636 44.000 14.75 0.00 31.64 1.85
4549 5208 8.074613 ACATTAACACCAGAGTAGTATAAGCA 57.925 34.615 0.00 0.00 0.00 3.91
4809 5470 6.292150 AGCCCTAGTTCTGCTTTATAACATC 58.708 40.000 0.00 0.00 29.17 3.06
4810 5471 6.253946 AGCCCTAGTTCTGCTTTATAACAT 57.746 37.500 0.00 0.00 29.17 2.71
4812 5473 7.931948 TGATAAGCCCTAGTTCTGCTTTATAAC 59.068 37.037 10.15 0.00 42.37 1.89
4854 5521 8.680820 TTCCTAGGGAGATTTTCTAAGAAGAA 57.319 34.615 9.46 0.00 34.80 2.52
4855 5522 8.541234 GTTTCCTAGGGAGATTTTCTAAGAAGA 58.459 37.037 9.46 0.00 31.21 2.87
4856 5523 8.322091 TGTTTCCTAGGGAGATTTTCTAAGAAG 58.678 37.037 9.46 0.00 31.21 2.85
5018 5686 6.395629 TCGTAGTCTTTCCCATACTGAAAAG 58.604 40.000 0.00 0.00 31.77 2.27
5118 5786 7.562135 GGGAAGAACTTATAACCTGTGATACA 58.438 38.462 0.00 0.00 0.00 2.29
5314 5982 4.159135 ACATGCAAATGGATCCAGAACTTC 59.841 41.667 21.33 7.48 0.00 3.01
5546 6217 6.114187 AGAGGAACTGTGATGACAACATAA 57.886 37.500 0.00 0.00 41.55 1.90
5604 6276 3.310774 GTCATAGCCTACATGCAGTGTTG 59.689 47.826 7.02 5.69 42.29 3.33
5827 6499 1.484240 CCCCTCACCAAACAAAAGCAA 59.516 47.619 0.00 0.00 0.00 3.91
5866 6731 5.128919 GCAAGGACCTATCAACAAGATGAT 58.871 41.667 0.00 0.00 42.52 2.45
5915 6780 4.747108 CACTGTTGTCACTAAGTCCTTCAG 59.253 45.833 0.00 0.00 0.00 3.02
6010 6875 8.556194 GTGACAGATGTTTACAACAGAAATACA 58.444 33.333 0.00 0.00 45.95 2.29
6105 6971 7.899974 AGAAATTCTGATTAATCACGACGAAG 58.100 34.615 14.23 3.40 32.50 3.79
6119 6985 6.631016 TGTAGCGTTACTGAGAAATTCTGAT 58.369 36.000 10.88 0.00 0.00 2.90
6125 6991 7.097192 TGATCTTTGTAGCGTTACTGAGAAAT 58.903 34.615 10.88 0.94 30.72 2.17
6143 7009 6.944862 ACTATCTTCCAACTTGCTTGATCTTT 59.055 34.615 0.00 0.00 30.42 2.52
6320 7186 9.814507 GTTATTATTGTTATGTCACGACAACAA 57.185 29.630 15.92 15.92 45.41 2.83
6322 7188 9.814507 TTGTTATTATTGTTATGTCACGACAAC 57.185 29.630 3.61 0.00 45.41 3.32
6401 7267 0.537188 ACACAGGGACCTTGCTATCG 59.463 55.000 2.96 0.00 0.00 2.92
6491 7357 0.246635 TGTCTTCGGTAGCAGCCTTC 59.753 55.000 0.00 0.00 0.00 3.46
6506 7372 2.138320 CAGTGCGTTGTCAGAATGTCT 58.862 47.619 0.00 0.00 37.40 3.41
6530 7396 3.094062 ATCAGACATGGCCGACGGG 62.094 63.158 17.22 0.56 0.00 5.28
6654 7521 3.123157 CAGAGGGTCTGGATGCATAAG 57.877 52.381 0.00 0.10 40.71 1.73
6670 7537 3.406200 CACCCAGGAGCCCCAGAG 61.406 72.222 0.00 0.00 33.88 3.35
6673 7540 4.590553 TCACACCCAGGAGCCCCA 62.591 66.667 0.00 0.00 33.88 4.96
6751 7618 4.700700 TCATGATGACTAATGCTGGACAG 58.299 43.478 0.00 0.00 0.00 3.51
6761 7628 5.985530 CCGCTATCACTTTCATGATGACTAA 59.014 40.000 0.00 0.00 39.68 2.24
6762 7629 5.069119 ACCGCTATCACTTTCATGATGACTA 59.931 40.000 0.00 0.00 39.68 2.59
6783 7650 8.925161 ATGAAACCATTGTTATCAATTAACCG 57.075 30.769 0.00 0.00 41.66 4.44
6840 7707 6.934083 TGAGGCAAAAATATGAACTTTTTCCC 59.066 34.615 0.00 0.00 34.82 3.97
6842 7709 7.360353 GGCTGAGGCAAAAATATGAACTTTTTC 60.360 37.037 0.00 0.00 40.87 2.29
6849 7717 2.765699 GGGGCTGAGGCAAAAATATGAA 59.234 45.455 8.68 0.00 40.87 2.57
6871 7739 3.142951 TGGTGTATTGGACTTTTCGGTG 58.857 45.455 0.00 0.00 0.00 4.94
6892 7760 7.389330 TGATAAATTGTTGTAACTGGTGACGAT 59.611 33.333 0.00 0.00 0.00 3.73
6950 7818 1.171308 CACCCAGCAGACAAATGAGG 58.829 55.000 0.00 0.00 0.00 3.86
6952 7820 2.644887 GCACCCAGCAGACAAATGA 58.355 52.632 0.00 0.00 44.79 2.57
6988 7856 0.161024 GACAAGACGAAGCCGAAACG 59.839 55.000 0.00 0.00 39.50 3.60
6989 7857 1.214367 TGACAAGACGAAGCCGAAAC 58.786 50.000 0.00 0.00 39.50 2.78
6993 7914 1.016130 AGCATGACAAGACGAAGCCG 61.016 55.000 0.00 0.00 42.50 5.52
7012 7933 1.654954 GAGCTCCTCCGAGTAACGCA 61.655 60.000 0.87 0.00 41.07 5.24
7014 7935 1.352404 CGAGCTCCTCCGAGTAACG 59.648 63.158 8.47 0.00 38.49 3.18
7015 7936 1.064458 GCGAGCTCCTCCGAGTAAC 59.936 63.158 8.47 0.00 38.49 2.50
7016 7937 0.680280 AAGCGAGCTCCTCCGAGTAA 60.680 55.000 8.47 0.00 38.49 2.24
7017 7938 1.077644 AAGCGAGCTCCTCCGAGTA 60.078 57.895 8.47 0.00 38.49 2.59
7019 7940 2.411290 GAAGCGAGCTCCTCCGAG 59.589 66.667 8.47 0.00 39.33 4.63
7020 7941 3.141488 GGAAGCGAGCTCCTCCGA 61.141 66.667 8.47 0.00 0.00 4.55
7021 7942 3.423162 CTGGAAGCGAGCTCCTCCG 62.423 68.421 8.47 0.00 0.00 4.63
7022 7943 2.498726 CTGGAAGCGAGCTCCTCC 59.501 66.667 8.47 12.20 0.00 4.30
7103 8090 6.834168 ATATATCAAAATAAAGGCGTGGGG 57.166 37.500 0.00 0.00 0.00 4.96
7147 8149 1.597663 CCGTGGCGTATTTTCCTCATC 59.402 52.381 0.00 0.00 0.00 2.92
7148 8150 1.065709 ACCGTGGCGTATTTTCCTCAT 60.066 47.619 0.00 0.00 0.00 2.90
7203 8205 4.999950 ACAGAGAAAAAGATACACCAGCAG 59.000 41.667 0.00 0.00 0.00 4.24
7205 8207 4.757149 ACACAGAGAAAAAGATACACCAGC 59.243 41.667 0.00 0.00 0.00 4.85
7207 8209 5.924356 TCACACAGAGAAAAAGATACACCA 58.076 37.500 0.00 0.00 0.00 4.17
7223 8236 3.949842 TGTTGATCCTCTCTCACACAG 57.050 47.619 0.00 0.00 0.00 3.66
7240 8253 1.077663 ACCAGCCATCCCAATCTTGTT 59.922 47.619 0.00 0.00 0.00 2.83
7256 8279 3.204827 GCCATGCTGCCGTACCAG 61.205 66.667 0.00 0.00 35.93 4.00
7311 8354 0.385390 GCCAGGACCACAAAACTGTG 59.615 55.000 0.00 0.00 39.37 3.66
7322 8365 1.673665 CAGCAGACAAGCCAGGACC 60.674 63.158 0.00 0.00 34.23 4.46
7325 8368 1.248785 AATGCAGCAGACAAGCCAGG 61.249 55.000 0.00 0.00 34.23 4.45
7391 8434 2.362329 GATGAGACCGAGCCTGAGCC 62.362 65.000 0.00 0.00 41.25 4.70
7392 8435 1.067250 GATGAGACCGAGCCTGAGC 59.933 63.158 0.00 0.00 40.32 4.26
7393 8436 0.385029 CTGATGAGACCGAGCCTGAG 59.615 60.000 0.00 0.00 0.00 3.35
7394 8437 1.039785 CCTGATGAGACCGAGCCTGA 61.040 60.000 0.00 0.00 0.00 3.86
7395 8438 1.326213 ACCTGATGAGACCGAGCCTG 61.326 60.000 0.00 0.00 0.00 4.85
7396 8439 0.259065 TACCTGATGAGACCGAGCCT 59.741 55.000 0.00 0.00 0.00 4.58
7437 8480 3.997021 CAGTACTAGTGCTTCAACCTTGG 59.003 47.826 11.16 0.00 0.00 3.61
7460 8503 9.825109 TTTTATTATGGCTTTTATTTACCAGGC 57.175 29.630 0.00 0.00 35.20 4.85
7509 8552 2.413108 GGTACGGTGTAAAATGTTGGCG 60.413 50.000 0.00 0.00 0.00 5.69
7583 8626 2.588856 AAATGGGAGGCGCTCGGTAC 62.589 60.000 7.64 0.00 0.00 3.34
7584 8627 2.306255 GAAATGGGAGGCGCTCGGTA 62.306 60.000 7.64 0.00 0.00 4.02
7585 8628 3.682292 GAAATGGGAGGCGCTCGGT 62.682 63.158 7.64 0.00 0.00 4.69
7586 8629 2.897350 GAAATGGGAGGCGCTCGG 60.897 66.667 7.64 0.00 0.00 4.63
7593 8661 0.182537 TATGGTGGCGAAATGGGAGG 59.817 55.000 0.00 0.00 0.00 4.30
7619 8687 3.380637 CCACGGTTCTACTATGTACTGCT 59.619 47.826 0.00 0.00 0.00 4.24
7621 8689 5.571784 TTCCACGGTTCTACTATGTACTG 57.428 43.478 0.00 0.00 0.00 2.74
7623 8691 5.684626 CGATTTCCACGGTTCTACTATGTAC 59.315 44.000 0.00 0.00 0.00 2.90
7624 8692 5.734220 GCGATTTCCACGGTTCTACTATGTA 60.734 44.000 0.00 0.00 0.00 2.29
7625 8693 4.679662 CGATTTCCACGGTTCTACTATGT 58.320 43.478 0.00 0.00 0.00 2.29
7626 8694 3.489785 GCGATTTCCACGGTTCTACTATG 59.510 47.826 0.00 0.00 0.00 2.23
7627 8695 3.131577 TGCGATTTCCACGGTTCTACTAT 59.868 43.478 0.00 0.00 0.00 2.12
7630 8698 1.659098 CTGCGATTTCCACGGTTCTAC 59.341 52.381 0.00 0.00 0.00 2.59
7631 8699 1.404986 CCTGCGATTTCCACGGTTCTA 60.405 52.381 0.00 0.00 0.00 2.10
7632 8700 0.673644 CCTGCGATTTCCACGGTTCT 60.674 55.000 0.00 0.00 0.00 3.01
7633 8701 0.672401 TCCTGCGATTTCCACGGTTC 60.672 55.000 0.00 0.00 0.00 3.62
7670 8738 3.019564 CCTTCTTCAAGATGGGCGAATT 58.980 45.455 10.95 0.00 36.27 2.17
7680 8748 2.426522 CCATGTTCGCCTTCTTCAAGA 58.573 47.619 0.00 0.00 0.00 3.02
7724 8792 1.499007 AGAACATTGGTTGGAGTGGGT 59.501 47.619 0.00 0.00 37.36 4.51
7726 8794 3.490348 AGAAGAACATTGGTTGGAGTGG 58.510 45.455 0.00 0.00 37.36 4.00
7727 8795 4.392940 AGAGAAGAACATTGGTTGGAGTG 58.607 43.478 0.00 0.00 37.36 3.51
7728 8796 4.713792 AGAGAAGAACATTGGTTGGAGT 57.286 40.909 0.00 0.00 37.36 3.85
7729 8797 8.792830 TTATAAGAGAAGAACATTGGTTGGAG 57.207 34.615 0.00 0.00 37.36 3.86
7734 8802 9.280174 TCGTTTTTATAAGAGAAGAACATTGGT 57.720 29.630 0.00 0.00 0.00 3.67
7738 8806 9.807386 CGTTTCGTTTTTATAAGAGAAGAACAT 57.193 29.630 0.00 0.00 0.00 2.71
7739 8807 7.795272 GCGTTTCGTTTTTATAAGAGAAGAACA 59.205 33.333 0.00 0.00 0.00 3.18
7740 8808 7.005067 CGCGTTTCGTTTTTATAAGAGAAGAAC 59.995 37.037 0.00 0.00 0.00 3.01
7741 8809 7.005380 CGCGTTTCGTTTTTATAAGAGAAGAA 58.995 34.615 0.00 0.00 0.00 2.52
7742 8810 6.363088 TCGCGTTTCGTTTTTATAAGAGAAGA 59.637 34.615 5.77 0.00 39.67 2.87
7743 8811 6.519315 TCGCGTTTCGTTTTTATAAGAGAAG 58.481 36.000 5.77 0.00 39.67 2.85
7744 8812 6.450845 TCGCGTTTCGTTTTTATAAGAGAA 57.549 33.333 5.77 0.00 39.67 2.87
7745 8813 6.636666 ATCGCGTTTCGTTTTTATAAGAGA 57.363 33.333 5.77 0.00 39.67 3.10
7746 8814 7.607005 AGTATCGCGTTTCGTTTTTATAAGAG 58.393 34.615 5.77 0.00 39.67 2.85
7747 8815 7.510428 AGTATCGCGTTTCGTTTTTATAAGA 57.490 32.000 5.77 0.00 39.67 2.10
7748 8816 8.578174 AAAGTATCGCGTTTCGTTTTTATAAG 57.422 30.769 5.77 0.00 39.67 1.73
7749 8817 8.829484 CAAAAGTATCGCGTTTCGTTTTTATAA 58.171 29.630 5.77 0.00 39.67 0.98
7750 8818 8.219769 TCAAAAGTATCGCGTTTCGTTTTTATA 58.780 29.630 5.77 0.00 39.67 0.98
7751 8819 7.058693 GTCAAAAGTATCGCGTTTCGTTTTTAT 59.941 33.333 5.77 0.00 39.67 1.40
7752 8820 6.354102 GTCAAAAGTATCGCGTTTCGTTTTTA 59.646 34.615 5.77 0.00 39.67 1.52
7753 8821 5.170092 GTCAAAAGTATCGCGTTTCGTTTTT 59.830 36.000 5.77 4.66 39.67 1.94
7754 8822 4.667504 GTCAAAAGTATCGCGTTTCGTTTT 59.332 37.500 5.77 4.67 39.67 2.43
7755 8823 4.206088 GTCAAAAGTATCGCGTTTCGTTT 58.794 39.130 5.77 3.90 39.67 3.60
7756 8824 3.659876 CGTCAAAAGTATCGCGTTTCGTT 60.660 43.478 5.77 0.00 39.67 3.85
7757 8825 2.160065 CGTCAAAAGTATCGCGTTTCGT 60.160 45.455 5.77 0.00 39.67 3.85
7758 8826 2.405736 CGTCAAAAGTATCGCGTTTCG 58.594 47.619 5.77 0.00 40.15 3.46
7759 8827 2.754478 CCGTCAAAAGTATCGCGTTTC 58.246 47.619 5.77 0.00 0.00 2.78
7760 8828 1.136169 GCCGTCAAAAGTATCGCGTTT 60.136 47.619 5.77 0.00 0.00 3.60
7761 8829 0.441145 GCCGTCAAAAGTATCGCGTT 59.559 50.000 5.77 0.00 0.00 4.84
7762 8830 1.356527 GGCCGTCAAAAGTATCGCGT 61.357 55.000 5.77 0.00 0.00 6.01
7763 8831 1.347221 GGCCGTCAAAAGTATCGCG 59.653 57.895 0.00 0.00 0.00 5.87
7764 8832 0.373716 CTGGCCGTCAAAAGTATCGC 59.626 55.000 0.00 0.00 0.00 4.58
7765 8833 1.006832 CCTGGCCGTCAAAAGTATCG 58.993 55.000 0.00 0.00 0.00 2.92
7766 8834 1.379527 CCCTGGCCGTCAAAAGTATC 58.620 55.000 0.00 0.00 0.00 2.24
7767 8835 0.034477 CCCCTGGCCGTCAAAAGTAT 60.034 55.000 0.00 0.00 0.00 2.12
7768 8836 1.377229 CCCCTGGCCGTCAAAAGTA 59.623 57.895 0.00 0.00 0.00 2.24
7769 8837 2.115266 CCCCTGGCCGTCAAAAGT 59.885 61.111 0.00 0.00 0.00 2.66
7770 8838 2.676471 CCCCCTGGCCGTCAAAAG 60.676 66.667 0.00 0.00 0.00 2.27
7784 8852 0.405973 AAGCAGACTCCTTTTCCCCC 59.594 55.000 0.00 0.00 0.00 5.40
7785 8853 1.827681 GAAGCAGACTCCTTTTCCCC 58.172 55.000 0.00 0.00 0.00 4.81
7786 8854 1.270893 ACGAAGCAGACTCCTTTTCCC 60.271 52.381 0.00 0.00 0.00 3.97
7787 8855 2.070028 GACGAAGCAGACTCCTTTTCC 58.930 52.381 0.00 0.00 0.00 3.13
7788 8856 3.033368 AGACGAAGCAGACTCCTTTTC 57.967 47.619 0.00 0.00 0.00 2.29
7789 8857 3.056465 CCTAGACGAAGCAGACTCCTTTT 60.056 47.826 0.00 0.00 0.00 2.27
7790 8858 2.494073 CCTAGACGAAGCAGACTCCTTT 59.506 50.000 0.00 0.00 0.00 3.11
7791 8859 2.096248 CCTAGACGAAGCAGACTCCTT 58.904 52.381 0.00 0.00 0.00 3.36
7792 8860 1.683629 CCCTAGACGAAGCAGACTCCT 60.684 57.143 0.00 0.00 0.00 3.69
7793 8861 0.741915 CCCTAGACGAAGCAGACTCC 59.258 60.000 0.00 0.00 0.00 3.85
7794 8862 1.465794 ACCCTAGACGAAGCAGACTC 58.534 55.000 0.00 0.00 0.00 3.36
7795 8863 1.926108 AACCCTAGACGAAGCAGACT 58.074 50.000 0.00 0.00 0.00 3.24
7796 8864 2.745515 AAACCCTAGACGAAGCAGAC 57.254 50.000 0.00 0.00 0.00 3.51
7797 8865 3.368116 GCTAAAACCCTAGACGAAGCAGA 60.368 47.826 0.00 0.00 0.00 4.26
7798 8866 2.930682 GCTAAAACCCTAGACGAAGCAG 59.069 50.000 0.00 0.00 0.00 4.24
7799 8867 2.673043 CGCTAAAACCCTAGACGAAGCA 60.673 50.000 0.00 0.00 0.00 3.91
7800 8868 1.925185 CGCTAAAACCCTAGACGAAGC 59.075 52.381 0.00 0.00 0.00 3.86
7801 8869 3.498927 TCGCTAAAACCCTAGACGAAG 57.501 47.619 0.00 0.00 30.18 3.79
7802 8870 3.429822 CCATCGCTAAAACCCTAGACGAA 60.430 47.826 0.00 0.00 33.96 3.85
7803 8871 2.100252 CCATCGCTAAAACCCTAGACGA 59.900 50.000 0.00 0.00 34.40 4.20
7804 8872 2.470821 CCATCGCTAAAACCCTAGACG 58.529 52.381 0.00 0.00 0.00 4.18
7805 8873 2.835027 CCCATCGCTAAAACCCTAGAC 58.165 52.381 0.00 0.00 0.00 2.59
7806 8874 1.140252 GCCCATCGCTAAAACCCTAGA 59.860 52.381 0.00 0.00 0.00 2.43
7807 8875 1.594331 GCCCATCGCTAAAACCCTAG 58.406 55.000 0.00 0.00 0.00 3.02
7808 8876 0.179067 CGCCCATCGCTAAAACCCTA 60.179 55.000 0.00 0.00 34.21 3.53
7809 8877 1.451387 CGCCCATCGCTAAAACCCT 60.451 57.895 0.00 0.00 34.21 4.34
7810 8878 3.107447 CGCCCATCGCTAAAACCC 58.893 61.111 0.00 0.00 34.21 4.11
7845 8913 3.361977 CCCGTCGGCAGGTTTTGG 61.362 66.667 5.50 0.00 0.00 3.28
7846 8914 2.281208 TCCCGTCGGCAGGTTTTG 60.281 61.111 5.50 0.00 0.00 2.44
7847 8915 2.032071 CTCCCGTCGGCAGGTTTT 59.968 61.111 5.50 0.00 0.00 2.43
7848 8916 4.699522 GCTCCCGTCGGCAGGTTT 62.700 66.667 5.50 0.00 0.00 3.27
7852 8920 4.514577 ATTCGCTCCCGTCGGCAG 62.515 66.667 5.50 0.30 35.54 4.85
7853 8921 4.508128 GATTCGCTCCCGTCGGCA 62.508 66.667 5.50 0.00 35.54 5.69
7855 8923 4.925576 CCGATTCGCTCCCGTCGG 62.926 72.222 3.60 3.60 43.47 4.79
7856 8924 3.195591 ATCCGATTCGCTCCCGTCG 62.196 63.158 0.00 0.00 34.14 5.12
7857 8925 1.371881 GATCCGATTCGCTCCCGTC 60.372 63.158 0.00 0.00 35.54 4.79
7858 8926 2.728817 GATCCGATTCGCTCCCGT 59.271 61.111 0.00 0.00 35.54 5.28
7859 8927 2.429236 CGATCCGATTCGCTCCCG 60.429 66.667 0.00 0.00 31.60 5.14
7871 8939 2.344129 GATTCCTCCCGGCGATCC 59.656 66.667 9.30 0.00 0.00 3.36
7872 8940 1.759459 AAGGATTCCTCCCGGCGATC 61.759 60.000 9.30 1.29 43.21 3.69
7873 8941 1.345715 AAAGGATTCCTCCCGGCGAT 61.346 55.000 9.30 0.00 43.21 4.58
7874 8942 1.968050 GAAAGGATTCCTCCCGGCGA 61.968 60.000 9.30 0.00 43.21 5.54
7875 8943 1.523938 GAAAGGATTCCTCCCGGCG 60.524 63.158 5.48 0.00 43.21 6.46
7876 8944 1.523938 CGAAAGGATTCCTCCCGGC 60.524 63.158 5.48 0.00 43.21 6.13
7877 8945 4.857251 CGAAAGGATTCCTCCCGG 57.143 61.111 5.48 0.00 43.21 5.73
7893 8961 2.358193 TACATCGGAATCGTGGCCCG 62.358 60.000 0.00 3.30 44.22 6.13
7894 8962 0.878961 GTACATCGGAATCGTGGCCC 60.879 60.000 0.00 0.00 37.69 5.80
7895 8963 0.179094 TGTACATCGGAATCGTGGCC 60.179 55.000 0.00 0.00 37.69 5.36
7896 8964 0.928229 GTGTACATCGGAATCGTGGC 59.072 55.000 0.00 0.00 37.69 5.01
7897 8965 1.197055 CGTGTACATCGGAATCGTGG 58.803 55.000 0.00 0.00 37.69 4.94
7906 8974 1.394572 TCGTAGACACCGTGTACATCG 59.605 52.381 3.58 4.85 32.81 3.84
7907 8975 2.417933 ACTCGTAGACACCGTGTACATC 59.582 50.000 3.58 0.00 32.81 3.06
7908 8976 2.417933 GACTCGTAGACACCGTGTACAT 59.582 50.000 3.58 0.00 32.81 2.29
7909 8977 1.800586 GACTCGTAGACACCGTGTACA 59.199 52.381 3.58 0.00 32.81 2.90
7910 8978 2.072298 AGACTCGTAGACACCGTGTAC 58.928 52.381 3.58 0.00 32.83 2.90
7911 8979 2.462456 AGACTCGTAGACACCGTGTA 57.538 50.000 3.58 0.00 32.83 2.90
7912 8980 2.462456 TAGACTCGTAGACACCGTGT 57.538 50.000 3.13 3.13 35.06 4.49
7913 8981 2.475852 GCTTAGACTCGTAGACACCGTG 60.476 54.545 0.00 0.00 0.00 4.94
7914 8982 1.736681 GCTTAGACTCGTAGACACCGT 59.263 52.381 0.00 0.00 0.00 4.83
7915 8983 1.063764 GGCTTAGACTCGTAGACACCG 59.936 57.143 0.00 0.00 0.00 4.94
7916 8984 1.063764 CGGCTTAGACTCGTAGACACC 59.936 57.143 0.00 0.00 0.00 4.16
7917 8985 2.455295 CGGCTTAGACTCGTAGACAC 57.545 55.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.