Multiple sequence alignment - TraesCS6A01G308200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G308200 chr6A 100.000 4748 0 0 1 4748 542937124 542932377 0.000000e+00 8769.0
1 TraesCS6A01G308200 chr6D 91.361 1447 68 22 3320 4748 396608045 396606638 0.000000e+00 1927.0
2 TraesCS6A01G308200 chr6D 91.971 1370 71 12 421 1770 396610677 396609327 0.000000e+00 1884.0
3 TraesCS6A01G308200 chr6D 92.864 1037 44 19 2011 3038 396609329 396608314 0.000000e+00 1478.0
4 TraesCS6A01G308200 chr6D 92.929 198 11 2 3124 3318 396608287 396608090 7.780000e-73 285.0
5 TraesCS6A01G308200 chr6D 82.857 280 35 6 4 270 396612008 396611729 6.140000e-59 239.0
6 TraesCS6A01G308200 chr6B 88.258 1303 77 38 505 1774 593266154 593264895 0.000000e+00 1489.0
7 TraesCS6A01G308200 chr6B 91.480 892 41 9 3124 4004 593263901 593263034 0.000000e+00 1194.0
8 TraesCS6A01G308200 chr6B 89.374 847 52 20 2011 2848 593264900 593264083 0.000000e+00 1031.0
9 TraesCS6A01G308200 chr6B 88.829 555 28 16 3986 4535 593260108 593259583 0.000000e+00 651.0
10 TraesCS6A01G308200 chr6B 85.236 508 59 4 7 498 593304846 593304339 4.240000e-140 508.0
11 TraesCS6A01G308200 chr6B 90.367 218 16 3 4531 4748 593129034 593128822 1.010000e-71 281.0
12 TraesCS6A01G308200 chr6B 94.375 160 8 1 2880 3038 593264087 593263928 1.320000e-60 244.0
13 TraesCS6A01G308200 chr1B 93.725 255 10 4 1759 2012 659106240 659106489 1.250000e-100 377.0
14 TraesCS6A01G308200 chr1B 92.941 255 12 4 1759 2012 659197070 659197319 2.700000e-97 366.0
15 TraesCS6A01G308200 chr1A 94.715 246 7 5 1768 2012 42602161 42601921 1.250000e-100 377.0
16 TraesCS6A01G308200 chr1A 93.522 247 15 1 1766 2012 333749696 333749941 2.700000e-97 366.0
17 TraesCS6A01G308200 chr1A 92.520 254 13 5 1762 2015 33962520 33962273 4.520000e-95 359.0
18 TraesCS6A01G308200 chr2A 94.024 251 9 2 1763 2012 73032789 73032544 4.490000e-100 375.0
19 TraesCS6A01G308200 chr2A 93.902 246 9 5 1768 2012 193830814 193830574 2.700000e-97 366.0
20 TraesCS6A01G308200 chr2A 97.849 93 0 2 3039 3130 177665196 177665287 4.920000e-35 159.0
21 TraesCS6A01G308200 chr2A 90.291 103 10 0 3037 3139 407739273 407739171 8.290000e-28 135.0
22 TraesCS6A01G308200 chr4A 93.574 249 10 4 1764 2012 660475064 660475306 2.700000e-97 366.0
23 TraesCS6A01G308200 chr4A 91.892 111 4 5 3022 3131 661959892 661959786 2.960000e-32 150.0
24 TraesCS6A01G308200 chr5A 92.075 265 12 8 1749 2012 411605802 411605546 9.710000e-97 364.0
25 TraesCS6A01G308200 chr5A 94.898 98 2 3 3032 3128 680511710 680511805 2.960000e-32 150.0
26 TraesCS6A01G308200 chr5A 91.150 113 5 4 3020 3128 475528919 475529030 1.060000e-31 148.0
27 TraesCS6A01G308200 chr3A 88.789 223 24 1 1509 1730 309003854 309004076 6.050000e-69 272.0
28 TraesCS6A01G308200 chr2D 84.942 259 31 4 3600 3851 2759966 2760223 6.100000e-64 255.0
29 TraesCS6A01G308200 chr2B 82.918 281 34 10 3600 3867 9016564 9016285 1.710000e-59 241.0
30 TraesCS6A01G308200 chr2B 79.710 276 41 9 3600 3867 8061253 8061521 8.110000e-43 185.0
31 TraesCS6A01G308200 chr2B 79.710 276 41 9 3600 3867 8217012 8217280 8.110000e-43 185.0
32 TraesCS6A01G308200 chr3B 96.000 100 0 4 3034 3131 790540239 790540336 4.920000e-35 159.0
33 TraesCS6A01G308200 chr7B 95.918 98 3 1 3037 3134 414571374 414571470 1.770000e-34 158.0
34 TraesCS6A01G308200 chr1D 93.519 108 4 3 3030 3135 211632321 211632427 1.770000e-34 158.0
35 TraesCS6A01G308200 chr5D 92.523 107 5 3 3030 3135 228556532 228556428 2.960000e-32 150.0
36 TraesCS6A01G308200 chr4D 97.561 41 1 0 218 258 18989113 18989073 2.370000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G308200 chr6A 542932377 542937124 4747 True 8769.0 8769 100.0000 1 4748 1 chr6A.!!$R1 4747
1 TraesCS6A01G308200 chr6D 396606638 396612008 5370 True 1162.6 1927 90.3964 4 4748 5 chr6D.!!$R1 4744
2 TraesCS6A01G308200 chr6B 593259583 593266154 6571 True 921.8 1489 90.4632 505 4535 5 chr6B.!!$R3 4030
3 TraesCS6A01G308200 chr6B 593304339 593304846 507 True 508.0 508 85.2360 7 498 1 chr6B.!!$R2 491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 118 0.530650 AACACGACACAGTCAGGCAG 60.531 55.000 0.00 0.0 32.09 4.85 F
1263 2196 0.039798 GCATGCTCTGTGGTGTGTTG 60.040 55.000 11.37 0.0 0.00 3.33 F
2013 2962 0.106116 AGATGGACGGAGGGAGTACC 60.106 60.000 0.00 0.0 40.67 3.34 F
2738 3698 0.322456 TCAGGGCAAATCGGGTGAAG 60.322 55.000 0.00 0.0 0.00 3.02 F
2873 3833 1.663643 GGCGCACTGTCGATTTCATTA 59.336 47.619 10.83 0.0 0.00 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1429 2362 0.035317 TGTCACTGACCATGGAGCAC 59.965 55.000 21.47 7.41 0.00 4.40 R
2873 3833 0.394080 TGTTCCCCGTTTCCGTTGTT 60.394 50.000 0.00 0.00 0.00 2.83 R
3635 4646 1.444553 CTTCTCGCCGTCTCACCAC 60.445 63.158 0.00 0.00 0.00 4.16 R
3707 4718 1.819632 GGGCATGAACCGTGGCTAG 60.820 63.158 11.57 0.00 43.95 3.42 R
4486 8458 1.909302 CAAGGCATATATCTCCCGGGT 59.091 52.381 22.86 3.24 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.296715 GGCAGGAGGTGAATGACGT 59.703 57.895 0.00 0.00 0.00 4.34
87 103 0.922111 CCGCGTGAACGAAACAACAC 60.922 55.000 4.92 0.00 43.02 3.32
102 118 0.530650 AACACGACACAGTCAGGCAG 60.531 55.000 0.00 0.00 32.09 4.85
103 119 1.363807 CACGACACAGTCAGGCAGA 59.636 57.895 0.00 0.00 32.09 4.26
230 246 2.755103 GAGATGGAAAACACCCCATGAC 59.245 50.000 0.00 0.00 42.80 3.06
231 247 1.472480 GATGGAAAACACCCCATGACG 59.528 52.381 0.00 0.00 42.80 4.35
262 278 2.386100 ACATCCATGGCCCATCCGT 61.386 57.895 6.96 0.00 37.80 4.69
354 405 6.017852 GGACAACTCGAAGAATTCTTTTCACT 60.018 38.462 21.33 4.93 44.75 3.41
429 1346 9.872684 ATCCTATGTAGAAACATGAATCCATTT 57.127 29.630 0.00 0.00 45.99 2.32
457 1374 4.936685 ACTAGAGGGCTCCAAAGAAAAT 57.063 40.909 0.00 0.00 0.00 1.82
578 1508 1.590932 CTTCCATCCGCTCCAATCAG 58.409 55.000 0.00 0.00 0.00 2.90
608 1538 1.962807 TGGGCTCCAATTCAAACACAG 59.037 47.619 0.00 0.00 0.00 3.66
615 1545 5.451798 GCTCCAATTCAAACACAGGAAAGAA 60.452 40.000 0.00 0.00 0.00 2.52
664 1595 7.015779 AGGTGAAGTAAAGTAAGAAGAAGAGCT 59.984 37.037 0.00 0.00 0.00 4.09
665 1596 7.117092 GGTGAAGTAAAGTAAGAAGAAGAGCTG 59.883 40.741 0.00 0.00 0.00 4.24
666 1597 7.117092 GTGAAGTAAAGTAAGAAGAAGAGCTGG 59.883 40.741 0.00 0.00 0.00 4.85
667 1598 5.483811 AGTAAAGTAAGAAGAAGAGCTGGC 58.516 41.667 0.00 0.00 0.00 4.85
668 1599 2.663826 AGTAAGAAGAAGAGCTGGCG 57.336 50.000 0.00 0.00 0.00 5.69
723 1654 2.671619 TGCCCCGAAAAGAAGCCG 60.672 61.111 0.00 0.00 0.00 5.52
745 1676 3.307059 GCTACCAACACAGAGAGGAACAT 60.307 47.826 0.00 0.00 0.00 2.71
938 1870 4.021925 GCCCACTCCAACGAGCCT 62.022 66.667 0.00 0.00 40.03 4.58
939 1871 2.656069 GCCCACTCCAACGAGCCTA 61.656 63.158 0.00 0.00 40.03 3.93
968 1900 3.494232 CGCCAAAAATAAACCCGTACTG 58.506 45.455 0.00 0.00 0.00 2.74
1140 2072 2.464865 CTCTTCGCTCTCGGTAATTGG 58.535 52.381 0.00 0.00 36.13 3.16
1149 2081 1.743623 CGGTAATTGGTCGCTGGCA 60.744 57.895 0.00 0.00 0.00 4.92
1263 2196 0.039798 GCATGCTCTGTGGTGTGTTG 60.040 55.000 11.37 0.00 0.00 3.33
1354 2287 3.791586 GGAGCTGGACTGGGAGCC 61.792 72.222 0.00 0.00 35.69 4.70
1445 2378 1.004560 ACGTGCTCCATGGTCAGTG 60.005 57.895 12.58 9.01 0.00 3.66
1462 2395 4.092091 GTCAGTGACATTAAGCTTCTTCCG 59.908 45.833 18.54 0.00 32.09 4.30
1491 2424 7.094720 CCCTTGATGCTATCAGAATTCAGAATC 60.095 40.741 8.44 6.40 40.94 2.52
1495 2428 8.208903 TGATGCTATCAGAATTCAGAATCTCAA 58.791 33.333 8.44 0.00 33.59 3.02
1541 2474 5.684704 TCCATAATGTCTTCCCAAGATGAC 58.315 41.667 2.98 2.98 43.90 3.06
1556 2489 3.650948 AGATGACATCTGGTGATCCTGA 58.349 45.455 17.27 0.00 40.57 3.86
1562 2506 2.408271 TCTGGTGATCCTGAACATGC 57.592 50.000 0.00 0.00 38.44 4.06
1564 2508 3.106827 TCTGGTGATCCTGAACATGCTA 58.893 45.455 0.00 0.00 38.44 3.49
1572 2516 4.226427 TCCTGAACATGCTATCTGCTTT 57.774 40.909 0.00 0.00 43.37 3.51
1634 2580 4.226620 TGGTAGGTCCTTTTAGCTTTAGGG 59.773 45.833 0.00 0.00 37.07 3.53
1645 2591 3.618690 AGCTTTAGGGTCTGCTAGTTG 57.381 47.619 0.00 0.00 33.64 3.16
1646 2592 2.010497 GCTTTAGGGTCTGCTAGTTGC 58.990 52.381 0.00 0.00 43.25 4.17
1733 2682 2.298729 GTGCCATTTGGTAGAAAAGGCA 59.701 45.455 11.06 11.06 39.18 4.75
1737 2686 4.631377 GCCATTTGGTAGAAAAGGCAAATC 59.369 41.667 8.19 0.00 35.34 2.17
1793 2742 4.369809 CCCCCTTCCATCTATATAGGGT 57.630 50.000 9.89 0.00 43.35 4.34
1794 2743 4.299485 CCCCCTTCCATCTATATAGGGTC 58.701 52.174 9.89 0.00 43.35 4.46
1795 2744 4.015163 CCCCCTTCCATCTATATAGGGTCT 60.015 50.000 9.89 0.00 43.35 3.85
1796 2745 5.198013 CCCCCTTCCATCTATATAGGGTCTA 59.802 48.000 9.89 0.00 43.35 2.59
1797 2746 6.298841 CCCCCTTCCATCTATATAGGGTCTAA 60.299 46.154 9.89 0.00 43.35 2.10
1798 2747 7.374271 CCCCTTCCATCTATATAGGGTCTAAT 58.626 42.308 9.89 0.00 43.35 1.73
1799 2748 7.291182 CCCCTTCCATCTATATAGGGTCTAATG 59.709 44.444 9.89 5.15 43.35 1.90
1800 2749 7.202047 CCCTTCCATCTATATAGGGTCTAATGC 60.202 44.444 9.89 0.00 40.58 3.56
1801 2750 6.961360 TCCATCTATATAGGGTCTAATGCG 57.039 41.667 9.89 1.15 0.00 4.73
1802 2751 6.432581 TCCATCTATATAGGGTCTAATGCGT 58.567 40.000 9.89 0.00 0.00 5.24
1803 2752 6.895756 TCCATCTATATAGGGTCTAATGCGTT 59.104 38.462 9.89 0.00 0.00 4.84
1804 2753 7.399191 TCCATCTATATAGGGTCTAATGCGTTT 59.601 37.037 9.89 0.00 0.00 3.60
1805 2754 8.041323 CCATCTATATAGGGTCTAATGCGTTTT 58.959 37.037 9.89 0.00 0.00 2.43
1806 2755 9.436957 CATCTATATAGGGTCTAATGCGTTTTT 57.563 33.333 9.89 0.00 0.00 1.94
1807 2756 9.654663 ATCTATATAGGGTCTAATGCGTTTTTC 57.345 33.333 9.89 0.00 0.00 2.29
1808 2757 6.780706 ATATAGGGTCTAATGCGTTTTTCG 57.219 37.500 0.00 0.00 43.12 3.46
1809 2758 3.048337 AGGGTCTAATGCGTTTTTCGA 57.952 42.857 0.00 0.00 42.86 3.71
1810 2759 3.000727 AGGGTCTAATGCGTTTTTCGAG 58.999 45.455 0.00 0.00 42.86 4.04
1811 2760 2.095372 GGGTCTAATGCGTTTTTCGAGG 59.905 50.000 0.00 0.00 42.86 4.63
1812 2761 2.475685 GGTCTAATGCGTTTTTCGAGGC 60.476 50.000 0.00 0.00 42.86 4.70
1813 2762 2.415512 GTCTAATGCGTTTTTCGAGGCT 59.584 45.455 0.00 0.00 42.86 4.58
1814 2763 3.615496 GTCTAATGCGTTTTTCGAGGCTA 59.385 43.478 0.00 0.00 42.86 3.93
1815 2764 4.092383 GTCTAATGCGTTTTTCGAGGCTAA 59.908 41.667 0.00 0.00 42.86 3.09
1816 2765 4.873827 TCTAATGCGTTTTTCGAGGCTAAT 59.126 37.500 0.00 0.00 42.86 1.73
1817 2766 4.434713 AATGCGTTTTTCGAGGCTAATT 57.565 36.364 0.00 0.00 42.86 1.40
1818 2767 3.907894 TGCGTTTTTCGAGGCTAATTT 57.092 38.095 0.00 0.00 42.86 1.82
1819 2768 4.231718 TGCGTTTTTCGAGGCTAATTTT 57.768 36.364 0.00 0.00 42.86 1.82
1820 2769 3.978217 TGCGTTTTTCGAGGCTAATTTTG 59.022 39.130 0.00 0.00 42.86 2.44
1821 2770 4.223659 GCGTTTTTCGAGGCTAATTTTGA 58.776 39.130 0.00 0.00 42.86 2.69
1822 2771 4.857037 GCGTTTTTCGAGGCTAATTTTGAT 59.143 37.500 0.00 0.00 42.86 2.57
1823 2772 5.003496 GCGTTTTTCGAGGCTAATTTTGATC 59.997 40.000 0.00 0.00 42.86 2.92
1824 2773 6.083630 CGTTTTTCGAGGCTAATTTTGATCA 58.916 36.000 0.00 0.00 42.86 2.92
1825 2774 6.580791 CGTTTTTCGAGGCTAATTTTGATCAA 59.419 34.615 3.38 3.38 42.86 2.57
1826 2775 7.114247 CGTTTTTCGAGGCTAATTTTGATCAAA 59.886 33.333 16.91 16.91 42.86 2.69
1827 2776 8.925700 GTTTTTCGAGGCTAATTTTGATCAAAT 58.074 29.630 21.10 10.31 36.57 2.32
1871 2820 3.963665 TGACATGCAACTTACACAAAGC 58.036 40.909 0.00 0.00 38.93 3.51
1872 2821 3.379688 TGACATGCAACTTACACAAAGCA 59.620 39.130 0.00 0.00 38.93 3.91
1873 2822 3.705604 ACATGCAACTTACACAAAGCAC 58.294 40.909 0.00 0.00 38.93 4.40
1874 2823 3.130164 ACATGCAACTTACACAAAGCACA 59.870 39.130 0.00 0.00 38.93 4.57
1875 2824 4.202141 ACATGCAACTTACACAAAGCACAT 60.202 37.500 0.00 0.00 38.93 3.21
1876 2825 3.963665 TGCAACTTACACAAAGCACATC 58.036 40.909 0.00 0.00 38.93 3.06
1877 2826 2.973224 GCAACTTACACAAAGCACATCG 59.027 45.455 0.00 0.00 38.93 3.84
1878 2827 3.548014 GCAACTTACACAAAGCACATCGT 60.548 43.478 0.00 0.00 38.93 3.73
1879 2828 4.597079 CAACTTACACAAAGCACATCGTT 58.403 39.130 0.00 0.00 38.93 3.85
1880 2829 5.743467 CAACTTACACAAAGCACATCGTTA 58.257 37.500 0.00 0.00 38.93 3.18
1881 2830 5.994887 ACTTACACAAAGCACATCGTTAA 57.005 34.783 0.00 0.00 38.93 2.01
1882 2831 6.366315 ACTTACACAAAGCACATCGTTAAA 57.634 33.333 0.00 0.00 38.93 1.52
1883 2832 6.966021 ACTTACACAAAGCACATCGTTAAAT 58.034 32.000 0.00 0.00 38.93 1.40
1884 2833 7.422399 ACTTACACAAAGCACATCGTTAAATT 58.578 30.769 0.00 0.00 38.93 1.82
1885 2834 7.589954 ACTTACACAAAGCACATCGTTAAATTC 59.410 33.333 0.00 0.00 38.93 2.17
1886 2835 4.909305 ACACAAAGCACATCGTTAAATTCG 59.091 37.500 0.00 0.00 0.00 3.34
1887 2836 4.909305 CACAAAGCACATCGTTAAATTCGT 59.091 37.500 0.00 0.00 0.00 3.85
1888 2837 4.909305 ACAAAGCACATCGTTAAATTCGTG 59.091 37.500 0.00 0.00 0.00 4.35
1889 2838 4.742438 AAGCACATCGTTAAATTCGTGT 57.258 36.364 0.00 0.00 0.00 4.49
1890 2839 4.065423 AGCACATCGTTAAATTCGTGTG 57.935 40.909 12.21 12.21 40.02 3.82
1891 2840 3.496884 AGCACATCGTTAAATTCGTGTGT 59.503 39.130 15.24 7.34 39.66 3.72
1892 2841 3.597825 GCACATCGTTAAATTCGTGTGTG 59.402 43.478 15.13 15.13 42.34 3.82
1893 2842 4.609559 GCACATCGTTAAATTCGTGTGTGA 60.610 41.667 19.65 0.00 42.21 3.58
1894 2843 5.436410 CACATCGTTAAATTCGTGTGTGAA 58.564 37.500 14.70 0.00 42.21 3.18
1895 2844 5.904630 CACATCGTTAAATTCGTGTGTGAAA 59.095 36.000 14.70 0.00 42.21 2.69
1896 2845 6.084939 CACATCGTTAAATTCGTGTGTGAAAG 59.915 38.462 14.70 0.00 42.21 2.62
1897 2846 5.085636 TCGTTAAATTCGTGTGTGAAAGG 57.914 39.130 0.00 0.00 0.00 3.11
1898 2847 4.809958 TCGTTAAATTCGTGTGTGAAAGGA 59.190 37.500 0.00 0.00 0.00 3.36
1899 2848 5.050634 TCGTTAAATTCGTGTGTGAAAGGAG 60.051 40.000 0.00 0.00 0.00 3.69
1900 2849 3.626028 AAATTCGTGTGTGAAAGGAGC 57.374 42.857 0.00 0.00 0.00 4.70
1901 2850 2.550830 ATTCGTGTGTGAAAGGAGCT 57.449 45.000 0.00 0.00 0.00 4.09
1902 2851 2.325583 TTCGTGTGTGAAAGGAGCTT 57.674 45.000 0.00 0.00 0.00 3.74
1903 2852 2.325583 TCGTGTGTGAAAGGAGCTTT 57.674 45.000 0.00 0.00 36.29 3.51
1904 2853 2.210116 TCGTGTGTGAAAGGAGCTTTC 58.790 47.619 0.00 0.00 46.88 2.62
1937 2886 7.966246 AATTTTTACATTGTGCATGTCATGT 57.034 28.000 14.26 2.01 43.17 3.21
1939 2888 7.865875 TTTTTACATTGTGCATGTCATGTAC 57.134 32.000 22.84 22.84 43.17 2.90
1940 2889 6.816134 TTTACATTGTGCATGTCATGTACT 57.184 33.333 27.47 14.50 43.17 2.73
1941 2890 7.913674 TTTACATTGTGCATGTCATGTACTA 57.086 32.000 27.47 22.59 43.17 1.82
1942 2891 8.504812 TTTACATTGTGCATGTCATGTACTAT 57.495 30.769 27.47 23.55 43.17 2.12
1943 2892 8.504812 TTACATTGTGCATGTCATGTACTATT 57.495 30.769 27.47 19.04 43.17 1.73
1944 2893 9.606631 TTACATTGTGCATGTCATGTACTATTA 57.393 29.630 27.47 18.34 43.17 0.98
1945 2894 8.504812 ACATTGTGCATGTCATGTACTATTAA 57.495 30.769 27.47 17.22 43.17 1.40
1946 2895 9.123902 ACATTGTGCATGTCATGTACTATTAAT 57.876 29.630 27.47 18.36 43.17 1.40
1947 2896 9.603298 CATTGTGCATGTCATGTACTATTAATC 57.397 33.333 27.47 6.34 44.74 1.75
1948 2897 8.962884 TTGTGCATGTCATGTACTATTAATCT 57.037 30.769 27.47 0.00 44.74 2.40
1949 2898 8.962884 TGTGCATGTCATGTACTATTAATCTT 57.037 30.769 27.47 0.00 44.74 2.40
1950 2899 8.829612 TGTGCATGTCATGTACTATTAATCTTG 58.170 33.333 27.47 0.00 44.74 3.02
1951 2900 8.830580 GTGCATGTCATGTACTATTAATCTTGT 58.169 33.333 22.47 0.00 41.79 3.16
1952 2901 9.045223 TGCATGTCATGTACTATTAATCTTGTC 57.955 33.333 14.26 0.00 0.00 3.18
1953 2902 9.045223 GCATGTCATGTACTATTAATCTTGTCA 57.955 33.333 14.26 0.00 0.00 3.58
1966 2915 5.551760 AATCTTGTCAATAGTCAAAGGCG 57.448 39.130 0.00 0.00 0.00 5.52
1967 2916 3.334691 TCTTGTCAATAGTCAAAGGCGG 58.665 45.455 0.00 0.00 0.00 6.13
1968 2917 2.851263 TGTCAATAGTCAAAGGCGGT 57.149 45.000 0.00 0.00 0.00 5.68
1969 2918 2.695359 TGTCAATAGTCAAAGGCGGTC 58.305 47.619 0.00 0.00 0.00 4.79
1970 2919 2.301870 TGTCAATAGTCAAAGGCGGTCT 59.698 45.455 0.00 0.00 0.00 3.85
1971 2920 3.244422 TGTCAATAGTCAAAGGCGGTCTT 60.244 43.478 0.00 0.00 37.28 3.01
1972 2921 4.020928 TGTCAATAGTCAAAGGCGGTCTTA 60.021 41.667 0.00 0.00 34.78 2.10
1973 2922 4.933400 GTCAATAGTCAAAGGCGGTCTTAA 59.067 41.667 0.00 0.00 34.78 1.85
1974 2923 5.410439 GTCAATAGTCAAAGGCGGTCTTAAA 59.590 40.000 0.00 0.00 34.78 1.52
1975 2924 5.998981 TCAATAGTCAAAGGCGGTCTTAAAA 59.001 36.000 0.00 0.00 34.78 1.52
1976 2925 6.487331 TCAATAGTCAAAGGCGGTCTTAAAAA 59.513 34.615 0.00 0.00 34.78 1.94
1977 2926 4.563337 AGTCAAAGGCGGTCTTAAAAAC 57.437 40.909 0.00 0.00 34.78 2.43
1978 2927 3.949113 AGTCAAAGGCGGTCTTAAAAACA 59.051 39.130 0.00 0.00 34.78 2.83
1979 2928 4.039703 GTCAAAGGCGGTCTTAAAAACAC 58.960 43.478 0.00 0.00 34.78 3.32
1980 2929 3.695060 TCAAAGGCGGTCTTAAAAACACA 59.305 39.130 0.00 0.00 34.78 3.72
1981 2930 4.339814 TCAAAGGCGGTCTTAAAAACACAT 59.660 37.500 0.00 0.00 34.78 3.21
1982 2931 4.929819 AAGGCGGTCTTAAAAACACATT 57.070 36.364 0.00 0.00 33.14 2.71
1983 2932 6.039493 TCAAAGGCGGTCTTAAAAACACATTA 59.961 34.615 0.00 0.00 34.78 1.90
1984 2933 5.622770 AGGCGGTCTTAAAAACACATTAG 57.377 39.130 0.00 0.00 0.00 1.73
1985 2934 4.457949 AGGCGGTCTTAAAAACACATTAGG 59.542 41.667 0.00 0.00 0.00 2.69
1986 2935 4.163552 GCGGTCTTAAAAACACATTAGGC 58.836 43.478 0.00 0.00 0.00 3.93
1987 2936 4.729595 CGGTCTTAAAAACACATTAGGCC 58.270 43.478 0.00 0.00 0.00 5.19
1988 2937 4.380128 CGGTCTTAAAAACACATTAGGCCC 60.380 45.833 0.00 0.00 0.00 5.80
1989 2938 4.770531 GGTCTTAAAAACACATTAGGCCCT 59.229 41.667 0.00 0.00 0.00 5.19
1990 2939 5.947566 GGTCTTAAAAACACATTAGGCCCTA 59.052 40.000 0.00 0.00 0.00 3.53
1991 2940 6.605995 GGTCTTAAAAACACATTAGGCCCTAT 59.394 38.462 0.00 0.00 0.00 2.57
1992 2941 7.776500 GGTCTTAAAAACACATTAGGCCCTATA 59.224 37.037 0.00 0.00 0.00 1.31
1993 2942 9.350951 GTCTTAAAAACACATTAGGCCCTATAT 57.649 33.333 0.00 0.00 0.00 0.86
1998 2947 9.520515 AAAAACACATTAGGCCCTATATAGATG 57.479 33.333 11.53 8.07 0.00 2.90
1999 2948 6.814954 ACACATTAGGCCCTATATAGATGG 57.185 41.667 11.53 6.04 0.00 3.51
2000 2949 6.512120 ACACATTAGGCCCTATATAGATGGA 58.488 40.000 11.53 0.00 0.00 3.41
2001 2950 6.384305 ACACATTAGGCCCTATATAGATGGAC 59.616 42.308 11.53 7.03 0.00 4.02
2002 2951 5.598830 ACATTAGGCCCTATATAGATGGACG 59.401 44.000 11.53 0.00 0.00 4.79
2003 2952 3.033659 AGGCCCTATATAGATGGACGG 57.966 52.381 11.53 3.94 0.00 4.79
2004 2953 2.585900 AGGCCCTATATAGATGGACGGA 59.414 50.000 11.53 0.00 0.00 4.69
2005 2954 2.959707 GGCCCTATATAGATGGACGGAG 59.040 54.545 11.53 0.00 0.00 4.63
2006 2955 2.959707 GCCCTATATAGATGGACGGAGG 59.040 54.545 11.53 1.87 0.00 4.30
2007 2956 3.567397 CCCTATATAGATGGACGGAGGG 58.433 54.545 11.53 0.00 36.68 4.30
2008 2957 3.204606 CCCTATATAGATGGACGGAGGGA 59.795 52.174 11.53 0.00 44.48 4.20
2009 2958 4.465886 CCTATATAGATGGACGGAGGGAG 58.534 52.174 11.53 0.00 0.00 4.30
2010 2959 4.079672 CCTATATAGATGGACGGAGGGAGT 60.080 50.000 11.53 0.00 0.00 3.85
2011 2960 5.132312 CCTATATAGATGGACGGAGGGAGTA 59.868 48.000 11.53 0.00 0.00 2.59
2012 2961 2.653234 TAGATGGACGGAGGGAGTAC 57.347 55.000 0.00 0.00 0.00 2.73
2013 2962 0.106116 AGATGGACGGAGGGAGTACC 60.106 60.000 0.00 0.00 40.67 3.34
2014 2963 0.396695 GATGGACGGAGGGAGTACCA 60.397 60.000 0.00 0.00 43.89 3.25
2057 3006 2.904434 ACATACTGTCGGGTTTTCCTCT 59.096 45.455 0.00 0.00 40.46 3.69
2072 3021 8.753133 GGGTTTTCCTCTGATTATTTTTCTGAT 58.247 33.333 0.00 0.00 40.46 2.90
2200 3151 9.837525 CCTAACTACACTACGGTATCATTATTC 57.162 37.037 0.00 0.00 0.00 1.75
2272 3223 4.309099 CAGATTTCATAGAGCAGCTCCTC 58.691 47.826 19.40 0.00 0.00 3.71
2302 3253 3.730761 GTGCAACAGCAGCTCGGG 61.731 66.667 0.00 0.00 39.30 5.14
2351 3302 5.189736 TGGCAGGTCAGTTTCAGTATTATCT 59.810 40.000 0.00 0.00 0.00 1.98
2411 3363 0.958822 AGAAATGGCACCAAACCGAC 59.041 50.000 0.00 0.00 0.00 4.79
2552 3504 4.292208 TCGTGCGTTGTTGCTGCG 62.292 61.111 0.00 0.00 36.08 5.18
2611 3565 1.869767 CAGCTCAGCATACCGGATTTC 59.130 52.381 9.46 0.00 0.00 2.17
2738 3698 0.322456 TCAGGGCAAATCGGGTGAAG 60.322 55.000 0.00 0.00 0.00 3.02
2778 3738 9.201127 CATCTGTCTACAGGTACAATTATCATG 57.799 37.037 10.11 0.00 43.91 3.07
2784 3744 8.421784 TCTACAGGTACAATTATCATGAGAACC 58.578 37.037 4.61 2.38 0.00 3.62
2785 3745 7.200434 ACAGGTACAATTATCATGAGAACCT 57.800 36.000 4.61 4.88 0.00 3.50
2826 3786 6.147656 CCCTTCATTTTGTTCAAGGCAAATAC 59.852 38.462 0.00 0.00 35.99 1.89
2828 3788 7.095523 CCTTCATTTTGTTCAAGGCAAATACTG 60.096 37.037 0.00 0.00 35.99 2.74
2830 3790 7.946207 TCATTTTGTTCAAGGCAAATACTGTA 58.054 30.769 0.00 0.00 35.99 2.74
2832 3792 9.853555 CATTTTGTTCAAGGCAAATACTGTATA 57.146 29.630 0.00 0.00 35.99 1.47
2873 3833 1.663643 GGCGCACTGTCGATTTCATTA 59.336 47.619 10.83 0.00 0.00 1.90
2878 3838 4.549599 CGCACTGTCGATTTCATTAACAAC 59.450 41.667 0.00 0.00 0.00 3.32
2990 3955 5.012046 GGCTCCCATAATTTCATAAAAGGGG 59.988 44.000 0.00 0.00 35.74 4.79
3049 4014 7.651027 TGGTTGTTAGATACTTAGTACTCCC 57.349 40.000 0.00 0.00 0.00 4.30
3050 4015 7.416731 TGGTTGTTAGATACTTAGTACTCCCT 58.583 38.462 0.00 0.00 0.00 4.20
3051 4016 7.559170 TGGTTGTTAGATACTTAGTACTCCCTC 59.441 40.741 0.00 0.00 0.00 4.30
3053 4018 6.294473 TGTTAGATACTTAGTACTCCCTCCG 58.706 44.000 0.00 0.00 0.00 4.63
3054 4019 6.126652 TGTTAGATACTTAGTACTCCCTCCGT 60.127 42.308 0.00 0.00 0.00 4.69
3055 4020 7.071196 TGTTAGATACTTAGTACTCCCTCCGTA 59.929 40.741 0.00 0.00 0.00 4.02
3056 4021 6.506538 AGATACTTAGTACTCCCTCCGTAA 57.493 41.667 0.00 0.00 0.00 3.18
3057 4022 6.904626 AGATACTTAGTACTCCCTCCGTAAA 58.095 40.000 0.00 0.00 0.00 2.01
3058 4023 6.770303 AGATACTTAGTACTCCCTCCGTAAAC 59.230 42.308 0.00 0.00 0.00 2.01
3061 4026 6.485171 ACTTAGTACTCCCTCCGTAAACTAA 58.515 40.000 0.00 0.00 0.00 2.24
3062 4027 7.122048 ACTTAGTACTCCCTCCGTAAACTAAT 58.878 38.462 0.00 0.00 0.00 1.73
3063 4028 8.275040 ACTTAGTACTCCCTCCGTAAACTAATA 58.725 37.037 0.00 0.00 0.00 0.98
3064 4029 9.294614 CTTAGTACTCCCTCCGTAAACTAATAT 57.705 37.037 0.00 0.00 0.00 1.28
3067 4032 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
3068 4033 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3069 4034 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3070 4035 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3071 4036 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
3072 4037 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
3073 4038 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
3074 4039 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
3075 4040 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3076 4041 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
3077 4042 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
3104 4069 7.098074 ACTAAAGTAGTATGCTAAACGCTCT 57.902 36.000 0.00 0.00 37.23 4.09
3105 4070 7.545489 ACTAAAGTAGTATGCTAAACGCTCTT 58.455 34.615 0.00 0.00 37.23 2.85
3106 4071 8.680903 ACTAAAGTAGTATGCTAAACGCTCTTA 58.319 33.333 0.00 0.00 37.23 2.10
3107 4072 9.680315 CTAAAGTAGTATGCTAAACGCTCTTAT 57.320 33.333 0.00 0.00 40.11 1.73
3118 4083 9.806203 TGCTAAACGCTCTTATATTAGTTTACA 57.194 29.630 0.00 0.00 40.11 2.41
3122 4087 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3172 4137 4.994852 GGTTGTAACTTGATCAGTGTGCTA 59.005 41.667 0.00 0.00 35.12 3.49
3198 4163 4.471078 TCCATAGCAGAGTACCTACCAT 57.529 45.455 0.00 0.00 0.00 3.55
3318 4286 7.953158 TCAGAGAGTCTTCTGTAACAAAATG 57.047 36.000 15.05 0.00 43.96 2.32
3367 4378 4.201910 ACCGTTTTCTTCACTGTGACATTG 60.202 41.667 10.56 0.00 0.00 2.82
3422 4433 2.278531 GTGCAACAACCACCACGC 60.279 61.111 0.00 0.00 36.32 5.34
3432 4443 1.808411 ACCACCACGCTTATGTCTTG 58.192 50.000 0.00 0.00 0.00 3.02
3446 4457 9.438291 CGCTTATGTCTTGGTTAGATTTTTATG 57.562 33.333 0.00 0.00 34.79 1.90
3554 4565 8.663209 TTCCATCATTATCTTTCCTTTTCCAA 57.337 30.769 0.00 0.00 0.00 3.53
3558 4569 8.742777 CATCATTATCTTTCCTTTTCCAACTGA 58.257 33.333 0.00 0.00 0.00 3.41
3559 4570 8.704849 TCATTATCTTTCCTTTTCCAACTGAA 57.295 30.769 0.00 0.00 0.00 3.02
3560 4571 9.312904 TCATTATCTTTCCTTTTCCAACTGAAT 57.687 29.630 0.00 0.00 31.67 2.57
3563 4574 9.807921 TTATCTTTCCTTTTCCAACTGAATAGT 57.192 29.630 0.00 0.00 39.32 2.12
3564 4575 7.510549 TCTTTCCTTTTCCAACTGAATAGTG 57.489 36.000 0.00 0.00 37.19 2.74
3565 4576 7.060421 TCTTTCCTTTTCCAACTGAATAGTGT 58.940 34.615 0.00 0.00 37.19 3.55
3566 4577 6.633500 TTCCTTTTCCAACTGAATAGTGTG 57.367 37.500 0.00 0.00 37.19 3.82
3567 4578 5.935945 TCCTTTTCCAACTGAATAGTGTGA 58.064 37.500 0.00 0.00 37.19 3.58
3568 4579 5.763204 TCCTTTTCCAACTGAATAGTGTGAC 59.237 40.000 0.00 0.00 37.19 3.67
3569 4580 5.048713 CCTTTTCCAACTGAATAGTGTGACC 60.049 44.000 0.00 0.00 37.19 4.02
3570 4581 3.695830 TCCAACTGAATAGTGTGACCC 57.304 47.619 0.00 0.00 37.19 4.46
3571 4582 2.304761 TCCAACTGAATAGTGTGACCCC 59.695 50.000 0.00 0.00 37.19 4.95
3572 4583 2.305927 CCAACTGAATAGTGTGACCCCT 59.694 50.000 0.00 0.00 37.19 4.79
3573 4584 3.338249 CAACTGAATAGTGTGACCCCTG 58.662 50.000 0.00 0.00 37.19 4.45
3574 4585 2.902608 ACTGAATAGTGTGACCCCTGA 58.097 47.619 0.00 0.00 35.34 3.86
3575 4586 3.454858 ACTGAATAGTGTGACCCCTGAT 58.545 45.455 0.00 0.00 35.34 2.90
3576 4587 3.452627 ACTGAATAGTGTGACCCCTGATC 59.547 47.826 0.00 0.00 35.34 2.92
3577 4588 3.708631 CTGAATAGTGTGACCCCTGATCT 59.291 47.826 0.00 0.00 0.00 2.75
3578 4589 4.104086 TGAATAGTGTGACCCCTGATCTT 58.896 43.478 0.00 0.00 0.00 2.40
3597 4608 9.205719 CTGATCTTAATAGTGTGATTCCTGATG 57.794 37.037 0.00 0.00 0.00 3.07
3635 4646 7.782897 TCTTGATCTTGTAGGATATGGTAGG 57.217 40.000 0.00 0.00 0.00 3.18
3636 4647 7.306013 TCTTGATCTTGTAGGATATGGTAGGT 58.694 38.462 0.00 0.00 0.00 3.08
3707 4718 1.210155 GCGTGGACAAATGGCTCAC 59.790 57.895 0.00 0.00 0.00 3.51
3748 4759 2.225491 GTGTGTCGGCAACATGTGTAAT 59.775 45.455 0.00 0.00 40.80 1.89
3763 4774 9.687210 AACATGTGTAATGTACATAGGTATACG 57.313 33.333 9.21 0.00 42.48 3.06
3847 4866 3.390175 TGTAGAAAGAGAGGGGAGAGG 57.610 52.381 0.00 0.00 0.00 3.69
3952 4971 9.816787 TCTGGTATTTTCTTTTACATTAAGGGT 57.183 29.630 0.00 0.00 0.00 4.34
3953 4972 9.855021 CTGGTATTTTCTTTTACATTAAGGGTG 57.145 33.333 0.00 0.00 0.00 4.61
3968 4987 8.919145 ACATTAAGGGTGAATGTAAAGTTGAAA 58.081 29.630 0.00 0.00 43.92 2.69
4046 8008 6.148480 GTGGTTAATGCTGATGGATGTATCTC 59.852 42.308 0.00 0.00 0.00 2.75
4047 8009 6.043590 TGGTTAATGCTGATGGATGTATCTCT 59.956 38.462 0.00 0.00 0.00 3.10
4051 8013 7.893124 AATGCTGATGGATGTATCTCTTTTT 57.107 32.000 0.00 0.00 0.00 1.94
4115 8080 8.117813 TCTGTTGCGTCCTATATATGTGAATA 57.882 34.615 0.00 0.00 0.00 1.75
4195 8164 4.803329 AAAATCCATATGAGGGAGCAGT 57.197 40.909 3.65 0.00 37.96 4.40
4259 8230 7.254455 CGAAAGATGAACTGCCTATTCGTAATT 60.254 37.037 0.00 0.00 35.13 1.40
4292 8263 2.236395 GGTGGTCTAGTGCACTTGGTAT 59.764 50.000 27.06 1.19 0.00 2.73
4377 8348 5.335191 GCATTTGATTCTCGGAGTGAAAACT 60.335 40.000 4.69 0.00 43.36 2.66
4442 8414 4.628766 GGGTTTATGTTCAGTAACCTCGTC 59.371 45.833 14.15 1.04 39.90 4.20
4466 8438 0.251165 TTTGGGACTGGTGGCTTAGC 60.251 55.000 0.00 0.00 0.00 3.09
4486 8458 2.673043 GCGACACCTTTCCGTAAGATCA 60.673 50.000 0.00 0.00 43.02 2.92
4487 8459 2.921754 CGACACCTTTCCGTAAGATCAC 59.078 50.000 0.00 0.00 43.02 3.06
4539 8511 8.997621 AGAAGTTAATTGTATCGCAAACTCTA 57.002 30.769 0.00 0.00 40.91 2.43
4569 8541 7.562135 ACATTTAGTTTTCCCGCTATCTAGAA 58.438 34.615 0.00 0.00 0.00 2.10
4611 8583 4.164221 TCACTTCAGAAAAAGGAGGACACT 59.836 41.667 0.00 0.00 0.00 3.55
4612 8584 4.513318 CACTTCAGAAAAAGGAGGACACTC 59.487 45.833 0.00 0.00 43.20 3.51
4617 8589 4.884164 CAGAAAAAGGAGGACACTCAAACT 59.116 41.667 0.00 0.00 45.81 2.66
4618 8590 5.358160 CAGAAAAAGGAGGACACTCAAACTT 59.642 40.000 0.00 0.00 45.81 2.66
4619 8591 6.542370 CAGAAAAAGGAGGACACTCAAACTTA 59.458 38.462 0.00 0.00 45.81 2.24
4620 8592 7.067008 CAGAAAAAGGAGGACACTCAAACTTAA 59.933 37.037 0.00 0.00 45.81 1.85
4670 8642 4.881273 GCCTGATGATGTTATGGTGTTACA 59.119 41.667 0.00 0.00 0.00 2.41
4674 8646 5.879777 TGATGATGTTATGGTGTTACACAGG 59.120 40.000 17.67 0.00 35.86 4.00
4676 8648 5.626142 TGATGTTATGGTGTTACACAGGTT 58.374 37.500 17.67 1.37 35.86 3.50
4677 8649 5.471797 TGATGTTATGGTGTTACACAGGTTG 59.528 40.000 17.67 0.00 35.86 3.77
4678 8650 4.783055 TGTTATGGTGTTACACAGGTTGT 58.217 39.130 17.67 0.00 42.84 3.32
4679 8651 5.194432 TGTTATGGTGTTACACAGGTTGTT 58.806 37.500 17.67 0.00 39.91 2.83
4680 8652 5.652891 TGTTATGGTGTTACACAGGTTGTTT 59.347 36.000 17.67 0.00 39.91 2.83
4681 8653 6.827251 TGTTATGGTGTTACACAGGTTGTTTA 59.173 34.615 17.67 0.00 39.91 2.01
4722 8694 8.805145 AGGATCAAAGATTTAGAATAGGAGGA 57.195 34.615 0.00 0.00 0.00 3.71
4740 8712 2.178984 AGGAGAGGAGAGGGTGAATAGG 59.821 54.545 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.499827 GGGGCTTCTCTACGCGGAT 61.500 63.158 12.47 0.00 0.00 4.18
1 2 3.145551 GGGGCTTCTCTACGCGGA 61.146 66.667 12.47 0.00 0.00 5.54
3 4 1.739338 ATGAGGGGCTTCTCTACGCG 61.739 60.000 3.53 3.53 34.98 6.01
5 6 1.271102 GCTATGAGGGGCTTCTCTACG 59.729 57.143 9.13 0.00 34.98 3.51
9 10 0.107643 GGTGCTATGAGGGGCTTCTC 59.892 60.000 2.32 2.32 0.00 2.87
52 53 3.053291 GGGGCGCAACGTCATTCA 61.053 61.111 10.83 0.00 30.88 2.57
73 74 2.067013 TGTGTCGTGTTGTTTCGTTCA 58.933 42.857 0.00 0.00 0.00 3.18
76 92 1.657094 GACTGTGTCGTGTTGTTTCGT 59.343 47.619 0.00 0.00 0.00 3.85
87 103 1.735920 GCTCTGCCTGACTGTGTCG 60.736 63.158 0.00 0.00 34.95 4.35
213 229 0.538516 CCGTCATGGGGTGTTTTCCA 60.539 55.000 0.00 0.00 37.46 3.53
246 262 1.644437 TTGACGGATGGGCCATGGAT 61.644 55.000 26.77 8.36 35.94 3.41
262 278 0.034198 TCCGATTTGTGCGTCCTTGA 59.966 50.000 0.00 0.00 0.00 3.02
275 324 0.098376 GTACTCACGAGCGTCCGATT 59.902 55.000 5.65 0.00 0.00 3.34
333 383 6.763610 ACTCAGTGAAAAGAATTCTTCGAGTT 59.236 34.615 20.71 11.41 34.61 3.01
410 461 9.906660 TTTGTACAAATGGATTCATGTTTCTAC 57.093 29.630 17.01 0.00 33.18 2.59
419 1336 6.884295 CCCTCTAGTTTGTACAAATGGATTCA 59.116 38.462 23.11 4.63 32.36 2.57
429 1346 2.897350 TGGAGCCCTCTAGTTTGTACA 58.103 47.619 0.00 0.00 0.00 2.90
473 1390 2.176045 TGTAGGAACTCGCAAGGATGA 58.824 47.619 0.00 0.00 41.75 2.92
474 1391 2.672961 TGTAGGAACTCGCAAGGATG 57.327 50.000 0.00 0.00 41.75 3.51
481 1398 2.987232 AGGGAATTTGTAGGAACTCGC 58.013 47.619 0.00 0.00 41.75 5.03
578 1508 2.126189 GGAGCCCACGTCGTGTAC 60.126 66.667 23.01 14.53 0.00 2.90
624 1555 2.465860 TCACCTCGTGTGGGTATTTG 57.534 50.000 7.74 0.00 45.48 2.32
631 1562 3.107642 ACTTTACTTCACCTCGTGTGG 57.892 47.619 7.74 0.08 45.48 4.17
664 1595 4.002506 ACATCTCGTGCCACGCCA 62.003 61.111 13.39 0.86 42.21 5.69
665 1596 3.490759 CACATCTCGTGCCACGCC 61.491 66.667 13.39 0.00 42.21 5.68
723 1654 2.037251 TGTTCCTCTCTGTGTTGGTAGC 59.963 50.000 0.00 0.00 0.00 3.58
745 1676 2.299013 TCTCGCTTTCCTCTGTGCTTTA 59.701 45.455 0.00 0.00 0.00 1.85
808 1739 1.021390 CCCGTGATGAAGTCAGTGGC 61.021 60.000 0.00 0.00 37.56 5.01
809 1740 0.608130 TCCCGTGATGAAGTCAGTGG 59.392 55.000 0.00 0.00 37.56 4.00
811 1742 1.338200 GCTTCCCGTGATGAAGTCAGT 60.338 52.381 0.00 0.00 41.03 3.41
812 1743 1.363744 GCTTCCCGTGATGAAGTCAG 58.636 55.000 0.00 0.00 41.03 3.51
813 1744 0.036388 GGCTTCCCGTGATGAAGTCA 60.036 55.000 0.09 0.00 42.58 3.41
814 1745 0.744771 GGGCTTCCCGTGATGAAGTC 60.745 60.000 0.00 0.00 42.37 3.01
1149 2081 2.515991 CGCGAGAGAGGAGGAGCT 60.516 66.667 0.00 0.00 0.00 4.09
1263 2196 1.398390 CGGTCAATGCTCCAGCTTAAC 59.602 52.381 0.00 0.00 42.66 2.01
1429 2362 0.035317 TGTCACTGACCATGGAGCAC 59.965 55.000 21.47 7.41 0.00 4.40
1445 2378 1.671328 GGGCGGAAGAAGCTTAATGTC 59.329 52.381 0.00 0.00 34.52 3.06
1462 2395 0.767375 TCTGATAGCATCAAGGGGGC 59.233 55.000 0.00 0.00 39.11 5.80
1491 2424 5.293814 TGATTGCCACAACAAACAATTTGAG 59.706 36.000 8.24 3.32 43.26 3.02
1495 2428 4.768583 ACTGATTGCCACAACAAACAATT 58.231 34.783 0.00 0.00 32.76 2.32
1541 2474 2.617308 GCATGTTCAGGATCACCAGATG 59.383 50.000 0.00 0.00 38.94 2.90
1562 2506 4.679662 CATTCAGGCCAAAAAGCAGATAG 58.320 43.478 5.01 0.00 0.00 2.08
1564 2508 2.354403 GCATTCAGGCCAAAAAGCAGAT 60.354 45.455 5.01 0.00 0.00 2.90
1620 2566 5.735766 ACTAGCAGACCCTAAAGCTAAAAG 58.264 41.667 0.00 0.00 38.92 2.27
1691 2637 9.499479 TGGCACAACATATCAACATAAAATTTT 57.501 25.926 8.75 8.75 31.92 1.82
1775 2724 7.470702 CGCATTAGACCCTATATAGATGGAAGG 60.471 44.444 11.53 5.26 0.00 3.46
1778 2727 6.432581 ACGCATTAGACCCTATATAGATGGA 58.567 40.000 11.53 0.00 0.00 3.41
1779 2728 6.716934 ACGCATTAGACCCTATATAGATGG 57.283 41.667 11.53 7.34 0.00 3.51
1780 2729 9.436957 AAAAACGCATTAGACCCTATATAGATG 57.563 33.333 11.53 6.87 0.00 2.90
1781 2730 9.654663 GAAAAACGCATTAGACCCTATATAGAT 57.345 33.333 11.53 0.00 0.00 1.98
1782 2731 7.811236 CGAAAAACGCATTAGACCCTATATAGA 59.189 37.037 11.53 0.00 34.51 1.98
1783 2732 7.811236 TCGAAAAACGCATTAGACCCTATATAG 59.189 37.037 2.46 2.46 42.26 1.31
1784 2733 7.660112 TCGAAAAACGCATTAGACCCTATATA 58.340 34.615 0.00 0.00 42.26 0.86
1785 2734 6.518493 TCGAAAAACGCATTAGACCCTATAT 58.482 36.000 0.00 0.00 42.26 0.86
1786 2735 5.904941 TCGAAAAACGCATTAGACCCTATA 58.095 37.500 0.00 0.00 42.26 1.31
1787 2736 4.761975 TCGAAAAACGCATTAGACCCTAT 58.238 39.130 0.00 0.00 42.26 2.57
1788 2737 4.178540 CTCGAAAAACGCATTAGACCCTA 58.821 43.478 0.00 0.00 42.26 3.53
1789 2738 3.000727 CTCGAAAAACGCATTAGACCCT 58.999 45.455 0.00 0.00 42.26 4.34
1790 2739 2.095372 CCTCGAAAAACGCATTAGACCC 59.905 50.000 0.00 0.00 42.26 4.46
1791 2740 2.475685 GCCTCGAAAAACGCATTAGACC 60.476 50.000 0.00 0.00 42.26 3.85
1792 2741 2.415512 AGCCTCGAAAAACGCATTAGAC 59.584 45.455 0.00 0.00 42.26 2.59
1793 2742 2.695359 AGCCTCGAAAAACGCATTAGA 58.305 42.857 0.00 0.00 42.26 2.10
1794 2743 4.593597 TTAGCCTCGAAAAACGCATTAG 57.406 40.909 0.00 0.00 42.26 1.73
1795 2744 5.554822 AATTAGCCTCGAAAAACGCATTA 57.445 34.783 0.00 0.00 42.26 1.90
1796 2745 4.434713 AATTAGCCTCGAAAAACGCATT 57.565 36.364 0.00 0.00 42.26 3.56
1797 2746 4.434713 AAATTAGCCTCGAAAAACGCAT 57.565 36.364 0.00 0.00 42.26 4.73
1798 2747 3.907894 AAATTAGCCTCGAAAAACGCA 57.092 38.095 0.00 0.00 42.26 5.24
1799 2748 4.223659 TCAAAATTAGCCTCGAAAAACGC 58.776 39.130 0.00 0.00 42.26 4.84
1800 2749 6.083630 TGATCAAAATTAGCCTCGAAAAACG 58.916 36.000 0.00 0.00 44.09 3.60
1801 2750 7.867445 TTGATCAAAATTAGCCTCGAAAAAC 57.133 32.000 5.45 0.00 0.00 2.43
1845 2794 8.131100 GCTTTGTGTAAGTTGCATGTCATATAT 58.869 33.333 0.00 0.00 36.19 0.86
1846 2795 7.120432 TGCTTTGTGTAAGTTGCATGTCATATA 59.880 33.333 0.00 0.00 36.19 0.86
1847 2796 6.072008 TGCTTTGTGTAAGTTGCATGTCATAT 60.072 34.615 0.00 0.00 36.19 1.78
1848 2797 5.240403 TGCTTTGTGTAAGTTGCATGTCATA 59.760 36.000 0.00 0.00 36.19 2.15
1849 2798 4.037803 TGCTTTGTGTAAGTTGCATGTCAT 59.962 37.500 0.00 0.00 36.19 3.06
1850 2799 3.379688 TGCTTTGTGTAAGTTGCATGTCA 59.620 39.130 0.00 0.00 36.19 3.58
1851 2800 3.730715 GTGCTTTGTGTAAGTTGCATGTC 59.269 43.478 0.00 0.00 36.19 3.06
1852 2801 3.130164 TGTGCTTTGTGTAAGTTGCATGT 59.870 39.130 0.00 0.00 36.19 3.21
1853 2802 3.704512 TGTGCTTTGTGTAAGTTGCATG 58.295 40.909 0.00 0.00 36.19 4.06
1854 2803 4.549458 GATGTGCTTTGTGTAAGTTGCAT 58.451 39.130 0.00 0.00 36.19 3.96
1855 2804 3.547813 CGATGTGCTTTGTGTAAGTTGCA 60.548 43.478 0.00 0.00 36.19 4.08
1856 2805 2.973224 CGATGTGCTTTGTGTAAGTTGC 59.027 45.455 0.00 0.00 36.19 4.17
1857 2806 4.209452 ACGATGTGCTTTGTGTAAGTTG 57.791 40.909 0.00 0.00 36.19 3.16
1858 2807 4.893424 AACGATGTGCTTTGTGTAAGTT 57.107 36.364 0.00 0.00 36.19 2.66
1859 2808 5.994887 TTAACGATGTGCTTTGTGTAAGT 57.005 34.783 0.00 0.00 36.19 2.24
1860 2809 7.201149 CGAATTTAACGATGTGCTTTGTGTAAG 60.201 37.037 0.00 0.00 36.90 2.34
1861 2810 6.575572 CGAATTTAACGATGTGCTTTGTGTAA 59.424 34.615 0.00 0.00 0.00 2.41
1862 2811 6.074642 CGAATTTAACGATGTGCTTTGTGTA 58.925 36.000 0.00 0.00 0.00 2.90
1863 2812 4.909305 CGAATTTAACGATGTGCTTTGTGT 59.091 37.500 0.00 0.00 0.00 3.72
1864 2813 4.909305 ACGAATTTAACGATGTGCTTTGTG 59.091 37.500 0.00 0.00 34.70 3.33
1865 2814 4.909305 CACGAATTTAACGATGTGCTTTGT 59.091 37.500 0.00 0.00 34.70 2.83
1866 2815 4.909305 ACACGAATTTAACGATGTGCTTTG 59.091 37.500 0.00 0.00 34.70 2.77
1867 2816 4.909305 CACACGAATTTAACGATGTGCTTT 59.091 37.500 0.00 0.00 36.70 3.51
1868 2817 4.024387 ACACACGAATTTAACGATGTGCTT 60.024 37.500 3.43 0.00 41.40 3.91
1869 2818 3.496884 ACACACGAATTTAACGATGTGCT 59.503 39.130 3.43 0.00 41.40 4.40
1870 2819 3.597825 CACACACGAATTTAACGATGTGC 59.402 43.478 3.43 0.00 41.40 4.57
1871 2820 5.012655 TCACACACGAATTTAACGATGTG 57.987 39.130 16.40 16.40 44.12 3.21
1872 2821 5.660629 TTCACACACGAATTTAACGATGT 57.339 34.783 0.00 0.00 35.46 3.06
1873 2822 5.563751 CCTTTCACACACGAATTTAACGATG 59.436 40.000 0.00 0.00 34.70 3.84
1874 2823 5.467399 TCCTTTCACACACGAATTTAACGAT 59.533 36.000 0.00 0.00 34.70 3.73
1875 2824 4.809958 TCCTTTCACACACGAATTTAACGA 59.190 37.500 0.00 0.00 34.70 3.85
1876 2825 5.085636 TCCTTTCACACACGAATTTAACG 57.914 39.130 0.00 0.00 0.00 3.18
1877 2826 4.909880 GCTCCTTTCACACACGAATTTAAC 59.090 41.667 0.00 0.00 0.00 2.01
1878 2827 4.819630 AGCTCCTTTCACACACGAATTTAA 59.180 37.500 0.00 0.00 0.00 1.52
1879 2828 4.385825 AGCTCCTTTCACACACGAATTTA 58.614 39.130 0.00 0.00 0.00 1.40
1880 2829 3.214328 AGCTCCTTTCACACACGAATTT 58.786 40.909 0.00 0.00 0.00 1.82
1881 2830 2.851195 AGCTCCTTTCACACACGAATT 58.149 42.857 0.00 0.00 0.00 2.17
1882 2831 2.550830 AGCTCCTTTCACACACGAAT 57.449 45.000 0.00 0.00 0.00 3.34
1883 2832 2.325583 AAGCTCCTTTCACACACGAA 57.674 45.000 0.00 0.00 0.00 3.85
1884 2833 2.210116 GAAAGCTCCTTTCACACACGA 58.790 47.619 11.65 0.00 46.23 4.35
1885 2834 2.670401 GAAAGCTCCTTTCACACACG 57.330 50.000 11.65 0.00 46.23 4.49
1921 2870 9.603298 GATTAATAGTACATGACATGCACAATG 57.397 33.333 18.79 0.00 42.48 2.82
1922 2871 9.565090 AGATTAATAGTACATGACATGCACAAT 57.435 29.630 18.79 10.52 0.00 2.71
1923 2872 8.962884 AGATTAATAGTACATGACATGCACAA 57.037 30.769 18.79 6.65 0.00 3.33
1924 2873 8.829612 CAAGATTAATAGTACATGACATGCACA 58.170 33.333 18.79 7.29 0.00 4.57
1925 2874 8.830580 ACAAGATTAATAGTACATGACATGCAC 58.169 33.333 15.49 12.79 0.00 4.57
1926 2875 8.962884 ACAAGATTAATAGTACATGACATGCA 57.037 30.769 15.49 0.00 0.00 3.96
1927 2876 9.045223 TGACAAGATTAATAGTACATGACATGC 57.955 33.333 15.49 0.11 0.00 4.06
1940 2889 8.826710 CGCCTTTGACTATTGACAAGATTAATA 58.173 33.333 0.00 0.00 0.00 0.98
1941 2890 7.201732 CCGCCTTTGACTATTGACAAGATTAAT 60.202 37.037 0.00 0.00 0.00 1.40
1942 2891 6.093495 CCGCCTTTGACTATTGACAAGATTAA 59.907 38.462 0.00 0.00 0.00 1.40
1943 2892 5.584649 CCGCCTTTGACTATTGACAAGATTA 59.415 40.000 0.00 0.00 0.00 1.75
1944 2893 4.396166 CCGCCTTTGACTATTGACAAGATT 59.604 41.667 0.00 0.00 0.00 2.40
1945 2894 3.941483 CCGCCTTTGACTATTGACAAGAT 59.059 43.478 0.00 0.00 0.00 2.40
1946 2895 3.244422 ACCGCCTTTGACTATTGACAAGA 60.244 43.478 0.00 0.00 0.00 3.02
1947 2896 3.074412 ACCGCCTTTGACTATTGACAAG 58.926 45.455 0.00 0.00 0.00 3.16
1948 2897 3.071479 GACCGCCTTTGACTATTGACAA 58.929 45.455 0.00 0.00 0.00 3.18
1949 2898 2.301870 AGACCGCCTTTGACTATTGACA 59.698 45.455 0.00 0.00 0.00 3.58
1950 2899 2.973945 AGACCGCCTTTGACTATTGAC 58.026 47.619 0.00 0.00 0.00 3.18
1951 2900 3.695830 AAGACCGCCTTTGACTATTGA 57.304 42.857 0.00 0.00 0.00 2.57
1952 2901 5.873179 TTTAAGACCGCCTTTGACTATTG 57.127 39.130 0.00 0.00 36.34 1.90
1953 2902 6.263617 TGTTTTTAAGACCGCCTTTGACTATT 59.736 34.615 0.00 0.00 36.34 1.73
1954 2903 5.766174 TGTTTTTAAGACCGCCTTTGACTAT 59.234 36.000 0.00 0.00 36.34 2.12
1955 2904 5.007921 GTGTTTTTAAGACCGCCTTTGACTA 59.992 40.000 0.00 0.00 36.34 2.59
1956 2905 3.949113 TGTTTTTAAGACCGCCTTTGACT 59.051 39.130 0.00 0.00 36.34 3.41
1957 2906 4.039703 GTGTTTTTAAGACCGCCTTTGAC 58.960 43.478 0.00 0.00 36.34 3.18
1958 2907 3.695060 TGTGTTTTTAAGACCGCCTTTGA 59.305 39.130 0.00 0.00 36.34 2.69
1959 2908 4.035278 TGTGTTTTTAAGACCGCCTTTG 57.965 40.909 0.00 0.00 36.34 2.77
1960 2909 4.929819 ATGTGTTTTTAAGACCGCCTTT 57.070 36.364 0.00 0.00 36.34 3.11
1961 2910 4.929819 AATGTGTTTTTAAGACCGCCTT 57.070 36.364 0.00 0.00 38.87 4.35
1962 2911 4.457949 CCTAATGTGTTTTTAAGACCGCCT 59.542 41.667 0.00 0.00 0.00 5.52
1963 2912 4.729595 CCTAATGTGTTTTTAAGACCGCC 58.270 43.478 0.00 0.00 0.00 6.13
1964 2913 4.163552 GCCTAATGTGTTTTTAAGACCGC 58.836 43.478 0.00 0.00 0.00 5.68
1965 2914 4.380128 GGGCCTAATGTGTTTTTAAGACCG 60.380 45.833 0.84 0.00 0.00 4.79
1966 2915 4.770531 AGGGCCTAATGTGTTTTTAAGACC 59.229 41.667 2.82 0.00 0.00 3.85
1967 2916 5.977489 AGGGCCTAATGTGTTTTTAAGAC 57.023 39.130 2.82 0.00 0.00 3.01
1972 2921 9.520515 CATCTATATAGGGCCTAATGTGTTTTT 57.479 33.333 18.91 0.00 0.00 1.94
1973 2922 8.109634 CCATCTATATAGGGCCTAATGTGTTTT 58.890 37.037 18.91 0.30 0.00 2.43
1974 2923 7.461043 TCCATCTATATAGGGCCTAATGTGTTT 59.539 37.037 18.91 1.12 0.00 2.83
1975 2924 6.965866 TCCATCTATATAGGGCCTAATGTGTT 59.034 38.462 18.91 1.94 0.00 3.32
1976 2925 6.384305 GTCCATCTATATAGGGCCTAATGTGT 59.616 42.308 18.91 2.76 0.00 3.72
1977 2926 6.461648 CGTCCATCTATATAGGGCCTAATGTG 60.462 46.154 18.91 10.40 0.00 3.21
1978 2927 5.598830 CGTCCATCTATATAGGGCCTAATGT 59.401 44.000 18.91 9.02 0.00 2.71
1979 2928 5.011125 CCGTCCATCTATATAGGGCCTAATG 59.989 48.000 18.91 15.42 0.00 1.90
1980 2929 5.103215 TCCGTCCATCTATATAGGGCCTAAT 60.103 44.000 18.91 14.19 0.00 1.73
1981 2930 4.231195 TCCGTCCATCTATATAGGGCCTAA 59.769 45.833 18.91 7.61 0.00 2.69
1982 2931 3.789840 TCCGTCCATCTATATAGGGCCTA 59.210 47.826 17.16 17.16 0.00 3.93
1983 2932 2.585900 TCCGTCCATCTATATAGGGCCT 59.414 50.000 12.58 12.58 0.00 5.19
1984 2933 2.959707 CTCCGTCCATCTATATAGGGCC 59.040 54.545 9.89 0.00 0.00 5.80
1985 2934 2.959707 CCTCCGTCCATCTATATAGGGC 59.040 54.545 9.89 0.00 0.00 5.19
1986 2935 3.204606 TCCCTCCGTCCATCTATATAGGG 59.795 52.174 9.89 4.49 43.23 3.53
1987 2936 4.079672 ACTCCCTCCGTCCATCTATATAGG 60.080 50.000 9.89 0.00 0.00 2.57
1988 2937 5.118729 ACTCCCTCCGTCCATCTATATAG 57.881 47.826 3.10 3.10 0.00 1.31
1989 2938 5.104193 GGTACTCCCTCCGTCCATCTATATA 60.104 48.000 0.00 0.00 0.00 0.86
1990 2939 4.325187 GGTACTCCCTCCGTCCATCTATAT 60.325 50.000 0.00 0.00 0.00 0.86
1991 2940 3.009916 GGTACTCCCTCCGTCCATCTATA 59.990 52.174 0.00 0.00 0.00 1.31
1992 2941 2.225066 GGTACTCCCTCCGTCCATCTAT 60.225 54.545 0.00 0.00 0.00 1.98
1993 2942 1.144503 GGTACTCCCTCCGTCCATCTA 59.855 57.143 0.00 0.00 0.00 1.98
1994 2943 0.106116 GGTACTCCCTCCGTCCATCT 60.106 60.000 0.00 0.00 0.00 2.90
1995 2944 0.396695 TGGTACTCCCTCCGTCCATC 60.397 60.000 0.00 0.00 0.00 3.51
1996 2945 0.686769 GTGGTACTCCCTCCGTCCAT 60.687 60.000 0.00 0.00 0.00 3.41
1997 2946 1.304713 GTGGTACTCCCTCCGTCCA 60.305 63.158 0.00 0.00 0.00 4.02
1998 2947 0.614134 AAGTGGTACTCCCTCCGTCC 60.614 60.000 0.00 0.00 0.00 4.79
1999 2948 0.531200 CAAGTGGTACTCCCTCCGTC 59.469 60.000 0.00 0.00 0.00 4.79
2000 2949 0.178941 ACAAGTGGTACTCCCTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
2001 2950 0.974383 AACAAGTGGTACTCCCTCCG 59.026 55.000 0.00 0.00 0.00 4.63
2002 2951 2.258109 AGAACAAGTGGTACTCCCTCC 58.742 52.381 0.00 0.00 0.00 4.30
2003 2952 4.353383 AAAGAACAAGTGGTACTCCCTC 57.647 45.455 0.00 0.00 0.00 4.30
2004 2953 4.790718 AAAAGAACAAGTGGTACTCCCT 57.209 40.909 0.00 0.00 0.00 4.20
2005 2954 4.037565 CCAAAAAGAACAAGTGGTACTCCC 59.962 45.833 0.00 0.00 0.00 4.30
2006 2955 4.885325 TCCAAAAAGAACAAGTGGTACTCC 59.115 41.667 0.00 0.00 0.00 3.85
2007 2956 6.438763 CATCCAAAAAGAACAAGTGGTACTC 58.561 40.000 0.00 0.00 0.00 2.59
2008 2957 5.221244 GCATCCAAAAAGAACAAGTGGTACT 60.221 40.000 0.00 0.00 0.00 2.73
2009 2958 4.982295 GCATCCAAAAAGAACAAGTGGTAC 59.018 41.667 0.00 0.00 0.00 3.34
2010 2959 4.261405 CGCATCCAAAAAGAACAAGTGGTA 60.261 41.667 0.00 0.00 0.00 3.25
2011 2960 3.490761 CGCATCCAAAAAGAACAAGTGGT 60.491 43.478 0.00 0.00 0.00 4.16
2012 2961 3.052036 CGCATCCAAAAAGAACAAGTGG 58.948 45.455 0.00 0.00 0.00 4.00
2013 2962 2.472488 GCGCATCCAAAAAGAACAAGTG 59.528 45.455 0.30 0.00 0.00 3.16
2014 2963 2.545742 GGCGCATCCAAAAAGAACAAGT 60.546 45.455 10.83 0.00 34.01 3.16
2042 2991 4.837093 ATAATCAGAGGAAAACCCGACA 57.163 40.909 0.00 0.00 40.87 4.35
2109 3058 8.356657 CCCACACTAATTTTGAACATCACTTTA 58.643 33.333 0.00 0.00 0.00 1.85
2111 3060 6.323739 ACCCACACTAATTTTGAACATCACTT 59.676 34.615 0.00 0.00 0.00 3.16
2112 3061 5.833131 ACCCACACTAATTTTGAACATCACT 59.167 36.000 0.00 0.00 0.00 3.41
2113 3062 5.920273 CACCCACACTAATTTTGAACATCAC 59.080 40.000 0.00 0.00 0.00 3.06
2114 3063 5.596361 ACACCCACACTAATTTTGAACATCA 59.404 36.000 0.00 0.00 0.00 3.07
2115 3064 5.920273 CACACCCACACTAATTTTGAACATC 59.080 40.000 0.00 0.00 0.00 3.06
2155 3104 2.108952 AGGGAAAGATGTGGTTGAGCTT 59.891 45.455 0.00 0.00 0.00 3.74
2200 3151 0.872021 GAGGCGTGTGGATCTTAGCG 60.872 60.000 0.00 0.00 0.00 4.26
2243 3194 4.449131 TGCTCTATGAAATCTGCCTGAAG 58.551 43.478 0.00 0.00 0.00 3.02
2272 3223 2.865598 TTGCACAAACCGGGCATGG 61.866 57.895 6.32 0.00 37.39 3.66
2299 3250 4.082523 ATGTGTGCCGAGGACCCG 62.083 66.667 0.00 0.00 0.00 5.28
2302 3253 3.127533 GCCATGTGTGCCGAGGAC 61.128 66.667 0.00 0.00 0.00 3.85
2375 3326 1.801913 CTCTCTCGGTTTCGTGGCG 60.802 63.158 0.00 0.00 37.69 5.69
2411 3363 1.268386 ACACTCGTGTATACATCGCCG 60.268 52.381 9.18 8.00 42.90 6.46
2552 3504 6.575162 ACCAATCCAAAATTCAGTACAGAC 57.425 37.500 0.00 0.00 0.00 3.51
2611 3565 1.479420 CGTACACATCATCGTGCCCG 61.479 60.000 0.00 0.00 40.73 6.13
2749 3709 2.815158 TGTACCTGTAGACAGATGGCA 58.185 47.619 11.31 0.00 46.59 4.92
2778 3738 5.793026 CAAACTATGCAAGAGAGGTTCTC 57.207 43.478 6.02 0.00 43.70 2.87
2837 3797 1.338769 GCGCCTGTCTTTTCCTTAGGA 60.339 52.381 0.00 0.00 0.00 2.94
2854 3814 3.091417 GTTAATGAAATCGACAGTGCGC 58.909 45.455 0.00 0.00 0.00 6.09
2873 3833 0.394080 TGTTCCCCGTTTCCGTTGTT 60.394 50.000 0.00 0.00 0.00 2.83
2878 3838 1.655885 GGTTTGTTCCCCGTTTCCG 59.344 57.895 0.00 0.00 0.00 4.30
3038 4003 7.579761 ATTAGTTTACGGAGGGAGTACTAAG 57.420 40.000 0.00 0.00 0.00 2.18
3041 4006 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
3042 4007 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
3043 4008 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3044 4009 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
3045 4010 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
3048 4013 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
3049 4014 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
3050 4015 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
3051 4016 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
3068 4033 9.460906 GCATACTACTTTAGTATTCTAAACGCT 57.539 33.333 3.55 0.00 46.88 5.07
3069 4034 9.460906 AGCATACTACTTTAGTATTCTAAACGC 57.539 33.333 4.34 3.75 46.88 4.84
3096 4061 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3097 4062 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3098 4063 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3099 4064 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3100 4065 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3109 4074 9.454859 GTACTAAGTACTCCCTCTGTAAACTAA 57.545 37.037 0.00 0.00 36.25 2.24
3110 4075 8.830741 AGTACTAAGTACTCCCTCTGTAAACTA 58.169 37.037 0.00 0.00 44.86 2.24
3111 4076 7.697946 AGTACTAAGTACTCCCTCTGTAAACT 58.302 38.462 0.00 0.00 44.86 2.66
3112 4077 7.936496 AGTACTAAGTACTCCCTCTGTAAAC 57.064 40.000 0.00 0.00 44.86 2.01
3113 4078 8.946797 AAAGTACTAAGTACTCCCTCTGTAAA 57.053 34.615 0.00 0.00 46.96 2.01
3114 4079 9.454859 GTAAAGTACTAAGTACTCCCTCTGTAA 57.545 37.037 0.00 0.00 46.96 2.41
3115 4080 8.049721 GGTAAAGTACTAAGTACTCCCTCTGTA 58.950 40.741 0.00 0.00 46.96 2.74
3116 4081 6.889177 GGTAAAGTACTAAGTACTCCCTCTGT 59.111 42.308 0.00 0.00 46.96 3.41
3117 4082 6.888632 TGGTAAAGTACTAAGTACTCCCTCTG 59.111 42.308 0.00 0.00 46.96 3.35
3118 4083 6.889177 GTGGTAAAGTACTAAGTACTCCCTCT 59.111 42.308 0.00 0.00 46.96 3.69
3119 4084 6.889177 AGTGGTAAAGTACTAAGTACTCCCTC 59.111 42.308 0.00 0.00 46.96 4.30
3120 4085 6.798766 AGTGGTAAAGTACTAAGTACTCCCT 58.201 40.000 0.00 0.00 46.96 4.20
3121 4086 7.284261 CCTAGTGGTAAAGTACTAAGTACTCCC 59.716 44.444 0.00 0.00 46.96 4.30
3122 4087 7.831690 ACCTAGTGGTAAAGTACTAAGTACTCC 59.168 40.741 0.00 0.00 45.39 3.85
3172 4137 4.740154 AGGTACTCTGCTATGGATCTCT 57.260 45.455 0.00 0.00 0.00 3.10
3265 4233 4.272748 AGTCTTTAGCACAAAGTTTCGTCC 59.727 41.667 9.76 0.00 0.00 4.79
3268 4236 6.018180 ACCTTAGTCTTTAGCACAAAGTTTCG 60.018 38.462 9.76 0.00 0.00 3.46
3318 4286 5.245526 TGGTCCTAGGTGAGTTTTTAGAGTC 59.754 44.000 9.08 0.00 0.00 3.36
3324 4335 4.212716 GGTTTGGTCCTAGGTGAGTTTTT 58.787 43.478 9.08 0.00 0.00 1.94
3367 4378 3.491447 GCCCAATCATGGTATTGCAGTTC 60.491 47.826 2.33 0.00 46.01 3.01
3432 4443 8.390354 GGCAATTGCTTTCATAAAAATCTAACC 58.610 33.333 28.42 2.51 41.70 2.85
3446 4457 4.305989 TCCGATAATGGCAATTGCTTTC 57.694 40.909 28.42 13.71 41.70 2.62
3554 4565 2.902608 TCAGGGGTCACACTATTCAGT 58.097 47.619 0.00 0.00 34.42 3.41
3558 4569 6.831664 ATTAAGATCAGGGGTCACACTATT 57.168 37.500 0.00 0.00 0.00 1.73
3559 4570 7.015682 CACTATTAAGATCAGGGGTCACACTAT 59.984 40.741 0.00 0.00 0.00 2.12
3560 4571 6.323996 CACTATTAAGATCAGGGGTCACACTA 59.676 42.308 0.00 0.00 0.00 2.74
3561 4572 5.129485 CACTATTAAGATCAGGGGTCACACT 59.871 44.000 0.00 0.00 0.00 3.55
3562 4573 5.104900 ACACTATTAAGATCAGGGGTCACAC 60.105 44.000 0.00 0.00 0.00 3.82
3563 4574 5.030147 ACACTATTAAGATCAGGGGTCACA 58.970 41.667 0.00 0.00 0.00 3.58
3564 4575 5.128827 TCACACTATTAAGATCAGGGGTCAC 59.871 44.000 0.00 0.00 0.00 3.67
3565 4576 5.277250 TCACACTATTAAGATCAGGGGTCA 58.723 41.667 0.00 0.00 0.00 4.02
3566 4577 5.871396 TCACACTATTAAGATCAGGGGTC 57.129 43.478 0.00 0.00 0.00 4.46
3567 4578 6.183361 GGAATCACACTATTAAGATCAGGGGT 60.183 42.308 0.00 0.00 0.00 4.95
3568 4579 6.043706 AGGAATCACACTATTAAGATCAGGGG 59.956 42.308 0.00 0.00 0.00 4.79
3569 4580 6.933521 CAGGAATCACACTATTAAGATCAGGG 59.066 42.308 0.00 0.00 0.00 4.45
3570 4581 7.730084 TCAGGAATCACACTATTAAGATCAGG 58.270 38.462 0.00 0.00 0.00 3.86
3571 4582 9.205719 CATCAGGAATCACACTATTAAGATCAG 57.794 37.037 0.00 0.00 0.00 2.90
3572 4583 8.708378 ACATCAGGAATCACACTATTAAGATCA 58.292 33.333 0.00 0.00 0.00 2.92
3573 4584 9.553064 AACATCAGGAATCACACTATTAAGATC 57.447 33.333 0.00 0.00 0.00 2.75
3635 4646 1.444553 CTTCTCGCCGTCTCACCAC 60.445 63.158 0.00 0.00 0.00 4.16
3636 4647 2.636412 CCTTCTCGCCGTCTCACCA 61.636 63.158 0.00 0.00 0.00 4.17
3662 4673 3.101437 TGATGAAAAGCATGGGAGCAAT 58.899 40.909 0.00 0.00 37.34 3.56
3707 4718 1.819632 GGGCATGAACCGTGGCTAG 60.820 63.158 11.57 0.00 43.95 3.42
3748 4759 6.429624 CGTAAGCAACGTATACCTATGTACA 58.570 40.000 0.00 0.00 46.72 2.90
3763 4774 4.560819 CAGAGAACTCAGATCGTAAGCAAC 59.439 45.833 4.64 0.00 37.18 4.17
3950 4969 7.010923 TGCATGTTTTTCAACTTTACATTCACC 59.989 33.333 0.00 0.00 33.58 4.02
3952 4971 7.253917 CGTGCATGTTTTTCAACTTTACATTCA 60.254 33.333 0.00 0.00 33.58 2.57
3953 4972 7.056800 CGTGCATGTTTTTCAACTTTACATTC 58.943 34.615 0.00 0.00 33.58 2.67
4071 8033 7.542025 CAACAGAGATACATCCATCATCGATA 58.458 38.462 0.00 0.00 0.00 2.92
4292 8263 3.398318 TGCACTAGACCCTTGGAGATA 57.602 47.619 0.00 0.00 0.00 1.98
4413 8384 6.489022 AGGTTACTGAACATAAACCCAAGTTC 59.511 38.462 11.95 0.00 41.93 3.01
4442 8414 2.807676 AGCCACCAGTCCCAAAAATAG 58.192 47.619 0.00 0.00 0.00 1.73
4466 8438 2.921754 GTGATCTTACGGAAAGGTGTCG 59.078 50.000 0.00 0.00 35.75 4.35
4486 8458 1.909302 CAAGGCATATATCTCCCGGGT 59.091 52.381 22.86 3.24 0.00 5.28
4487 8459 1.909302 ACAAGGCATATATCTCCCGGG 59.091 52.381 16.85 16.85 0.00 5.73
4539 8511 8.648693 AGATAGCGGGAAAACTAAATGTAGTAT 58.351 33.333 0.00 0.00 39.79 2.12
4591 8563 4.708177 TGAGTGTCCTCCTTTTTCTGAAG 58.292 43.478 0.00 0.00 36.86 3.02
4697 8669 8.805145 TCCTCCTATTCTAAATCTTTGATCCT 57.195 34.615 0.00 0.00 0.00 3.24
4711 8683 2.721906 CCCTCTCCTCTCCTCCTATTCT 59.278 54.545 0.00 0.00 0.00 2.40
4720 8692 2.090999 ACCTATTCACCCTCTCCTCTCC 60.091 54.545 0.00 0.00 0.00 3.71
4722 8694 2.587777 TCACCTATTCACCCTCTCCTCT 59.412 50.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.