Multiple sequence alignment - TraesCS6A01G307900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G307900 chr6A 100.000 3065 0 0 1 3065 542432115 542429051 0.000000e+00 5661.0
1 TraesCS6A01G307900 chr6D 92.252 2620 99 44 1 2536 396012581 396009982 0.000000e+00 3618.0
2 TraesCS6A01G307900 chr6B 89.833 2872 147 58 16 2810 592466010 592463207 0.000000e+00 3552.0
3 TraesCS6A01G307900 chr1A 83.388 307 45 6 1755 2058 495192326 495192023 2.330000e-71 279.0
4 TraesCS6A01G307900 chr1D 82.390 318 49 7 1744 2058 397973297 397972984 1.400000e-68 270.0
5 TraesCS6A01G307900 chr1B 82.637 311 48 6 1751 2058 533324016 533323709 1.400000e-68 270.0
6 TraesCS6A01G307900 chr3A 82.712 295 43 6 1754 2044 594493030 594493320 3.920000e-64 255.0
7 TraesCS6A01G307900 chr3A 76.871 294 62 6 1754 2044 224378464 224378754 8.790000e-36 161.0
8 TraesCS6A01G307900 chr3D 82.178 303 44 8 1747 2044 451710634 451710931 5.070000e-63 252.0
9 TraesCS6A01G307900 chr3D 81.848 303 45 8 1747 2044 451886109 451886406 2.360000e-61 246.0
10 TraesCS6A01G307900 chr5D 77.286 339 67 7 1330 1666 526572112 526571782 1.120000e-44 191.0
11 TraesCS6A01G307900 chr5D 73.563 348 71 19 1330 1671 499246583 499246251 2.500000e-21 113.0
12 TraesCS6A01G307900 chr5A 77.101 345 68 9 1324 1666 653717132 653716797 4.030000e-44 189.0
13 TraesCS6A01G307900 chr5A 73.066 349 73 19 1329 1671 623504298 623503965 1.500000e-18 104.0
14 TraesCS6A01G307900 chr5B 77.059 340 66 10 1330 1666 662036909 662036579 5.220000e-43 185.0
15 TraesCS6A01G307900 chr5B 72.037 540 107 40 1329 1852 619927207 619926696 1.490000e-23 121.0
16 TraesCS6A01G307900 chr2A 81.818 99 11 3 1488 1581 643443465 643443369 3.280000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G307900 chr6A 542429051 542432115 3064 True 5661 5661 100.000 1 3065 1 chr6A.!!$R1 3064
1 TraesCS6A01G307900 chr6D 396009982 396012581 2599 True 3618 3618 92.252 1 2536 1 chr6D.!!$R1 2535
2 TraesCS6A01G307900 chr6B 592463207 592466010 2803 True 3552 3552 89.833 16 2810 1 chr6B.!!$R1 2794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 750 0.03254 CCACAGCTTTTGTCTTGGCC 59.967 55.0 0.0 0.0 38.16 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2598 2696 0.109086 TGCGAGTAGAAGACAGCAGC 60.109 55.0 0.0 0.0 38.5 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.081108 GCTATCGCCACTCGCTAGG 60.081 63.158 0.00 0.00 37.37 3.02
66 67 2.166870 TCGCCACTCGCTAGGAAATAAA 59.833 45.455 0.00 0.00 38.27 1.40
77 78 4.382793 GCTAGGAAATAAACTCCGGTCTGT 60.383 45.833 0.00 0.00 38.08 3.41
78 79 3.939066 AGGAAATAAACTCCGGTCTGTG 58.061 45.455 0.00 0.00 38.08 3.66
201 202 1.750399 CAATCCCGGGGCTGACAAG 60.750 63.158 23.50 0.00 0.00 3.16
249 250 3.564225 AGGTTCTTGTTCTTAAGCAACCG 59.436 43.478 0.00 0.00 39.76 4.44
250 251 3.562557 GGTTCTTGTTCTTAAGCAACCGA 59.437 43.478 0.00 1.47 33.01 4.69
251 252 4.524749 GTTCTTGTTCTTAAGCAACCGAC 58.475 43.478 0.00 0.00 0.00 4.79
252 253 4.067972 TCTTGTTCTTAAGCAACCGACT 57.932 40.909 0.00 0.00 0.00 4.18
253 254 4.056050 TCTTGTTCTTAAGCAACCGACTC 58.944 43.478 0.00 0.00 0.00 3.36
254 255 3.462483 TGTTCTTAAGCAACCGACTCA 57.538 42.857 0.00 0.00 0.00 3.41
255 256 3.390135 TGTTCTTAAGCAACCGACTCAG 58.610 45.455 0.00 0.00 0.00 3.35
256 257 3.181469 TGTTCTTAAGCAACCGACTCAGT 60.181 43.478 0.00 0.00 0.00 3.41
257 258 3.299340 TCTTAAGCAACCGACTCAGTC 57.701 47.619 0.00 0.00 0.00 3.51
258 259 2.029290 TCTTAAGCAACCGACTCAGTCC 60.029 50.000 0.00 0.00 0.00 3.85
272 273 3.063084 GTCCGACTGACCCGAGCT 61.063 66.667 0.00 0.00 38.09 4.09
280 281 2.182030 GACCCGAGCTTGAGACCG 59.818 66.667 1.22 0.00 0.00 4.79
332 333 4.759693 ACTTCCAGATTTGTGTATTCGCAA 59.240 37.500 0.00 0.00 41.45 4.85
369 370 2.093711 GGAGCAAAACCAACAAACCACT 60.094 45.455 0.00 0.00 0.00 4.00
370 371 3.131400 GGAGCAAAACCAACAAACCACTA 59.869 43.478 0.00 0.00 0.00 2.74
373 374 3.308595 GCAAAACCAACAAACCACTAAGC 59.691 43.478 0.00 0.00 0.00 3.09
395 396 7.971183 AGCTTTGTTTAAAACTGAAAACCAA 57.029 28.000 0.00 0.00 35.23 3.67
400 401 9.717892 TTTGTTTAAAACTGAAAACCAAAACAC 57.282 25.926 0.00 0.00 33.03 3.32
406 407 3.580895 ACTGAAAACCAAAACACCCAGTT 59.419 39.130 0.00 0.00 43.89 3.16
472 482 3.022607 AGTACCACGACAAGCAGTAAC 57.977 47.619 0.00 0.00 0.00 2.50
479 489 1.524986 CGACAAGCAGTAACGCAATCG 60.525 52.381 0.00 0.00 42.43 3.34
483 493 2.875080 AGCAGTAACGCAATCGAAAC 57.125 45.000 0.00 0.00 39.41 2.78
486 496 1.073177 AGTAACGCAATCGAAACCCG 58.927 50.000 0.00 0.00 39.41 5.28
487 497 0.095762 GTAACGCAATCGAAACCCGG 59.904 55.000 0.00 0.00 39.41 5.73
539 550 2.505407 TCCATCCACCTTTCATCATCGT 59.495 45.455 0.00 0.00 0.00 3.73
544 555 1.667724 CACCTTTCATCATCGTGGAGC 59.332 52.381 0.00 0.00 0.00 4.70
545 556 1.303309 CCTTTCATCATCGTGGAGCC 58.697 55.000 0.00 0.00 0.00 4.70
546 557 1.407299 CCTTTCATCATCGTGGAGCCA 60.407 52.381 0.00 0.00 0.00 4.75
552 576 1.051008 TCATCGTGGAGCCATGCTAT 58.949 50.000 3.81 0.00 39.88 2.97
589 613 2.100631 CGAACCAAGCAGGCCTACG 61.101 63.158 3.98 0.00 43.14 3.51
590 614 1.745489 GAACCAAGCAGGCCTACGG 60.745 63.158 3.98 6.12 43.14 4.02
591 615 3.268103 AACCAAGCAGGCCTACGGG 62.268 63.158 3.98 10.29 43.14 5.28
602 648 0.953003 GCCTACGGGTCTAGTGCTAG 59.047 60.000 0.00 0.00 34.45 3.42
629 675 0.821711 TCGGCCCACTTCCAAACTTG 60.822 55.000 0.00 0.00 0.00 3.16
630 676 1.367471 GGCCCACTTCCAAACTTGC 59.633 57.895 0.00 0.00 0.00 4.01
704 750 0.032540 CCACAGCTTTTGTCTTGGCC 59.967 55.000 0.00 0.00 38.16 5.36
730 779 1.503542 CTGCCGCTGCTTTTACCAG 59.496 57.895 0.70 0.00 38.71 4.00
1197 1267 2.967397 CACGCCACCTTCTACGGA 59.033 61.111 0.00 0.00 0.00 4.69
1259 1329 1.726791 CCGTCACTCACAGCATTGTAC 59.273 52.381 0.00 0.00 35.25 2.90
1284 1354 5.865085 AGTACTGTTTCTTGGTGCATCTTA 58.135 37.500 0.00 0.00 0.00 2.10
1549 1619 2.263540 GCCCAACTTCGCCGAGTA 59.736 61.111 0.00 0.00 0.00 2.59
1694 1764 0.457035 TCCGTCACGCATTACTACCC 59.543 55.000 0.00 0.00 0.00 3.69
1698 1768 1.664151 GTCACGCATTACTACCCTTGC 59.336 52.381 0.00 0.00 0.00 4.01
1715 1785 0.476338 TGCCTGCCCAAGAACTGTTA 59.524 50.000 0.00 0.00 0.00 2.41
1749 1819 4.082523 ACGGTGGCGTGGATCTGG 62.083 66.667 0.00 0.00 0.00 3.86
2013 2086 2.935955 GTCTCCAACAACGCCGTG 59.064 61.111 0.00 0.00 0.00 4.94
2058 2131 4.947147 TTCAGCGGCGCCCAGTTT 62.947 61.111 30.40 5.57 0.00 2.66
2125 2198 5.494724 TGTAGTAGTAGTGGTCAGTAGTGG 58.505 45.833 0.00 0.00 0.00 4.00
2144 2217 2.126580 CGTCGTCAACCTCCCGAC 60.127 66.667 0.00 0.00 45.49 4.79
2215 2289 1.589196 CGACGCTCTTCGGGGATTC 60.589 63.158 0.00 0.00 43.86 2.52
2218 2292 1.299468 CGCTCTTCGGGGATTCGAG 60.299 63.158 0.00 0.00 40.42 4.04
2221 2295 1.381327 TCTTCGGGGATTCGAGGCT 60.381 57.895 0.00 0.00 40.42 4.58
2356 2430 1.971695 GCAGCGGTGGTAAAGGCTT 60.972 57.895 17.54 0.00 32.46 4.35
2444 2518 3.609409 GCCTTTGTCTCGTGGATGTTTTC 60.609 47.826 0.00 0.00 0.00 2.29
2450 2543 1.864711 CTCGTGGATGTTTTCGTGTGT 59.135 47.619 0.00 0.00 0.00 3.72
2451 2544 1.595328 TCGTGGATGTTTTCGTGTGTG 59.405 47.619 0.00 0.00 0.00 3.82
2525 2618 5.829233 GCTTTTGCATGTTTTACTTCCTC 57.171 39.130 0.00 0.00 46.58 3.71
2527 2620 5.509670 GCTTTTGCATGTTTTACTTCCTCCT 60.510 40.000 0.00 0.00 46.58 3.69
2530 2623 4.985538 TGCATGTTTTACTTCCTCCTCTT 58.014 39.130 0.00 0.00 0.00 2.85
2536 2629 4.810191 TTTACTTCCTCCTCTTCTGAGC 57.190 45.455 0.00 0.00 38.93 4.26
2537 2630 2.317371 ACTTCCTCCTCTTCTGAGCA 57.683 50.000 0.00 0.00 38.93 4.26
2538 2631 2.614259 ACTTCCTCCTCTTCTGAGCAA 58.386 47.619 0.00 0.00 38.93 3.91
2539 2632 3.180507 ACTTCCTCCTCTTCTGAGCAAT 58.819 45.455 0.00 0.00 38.93 3.56
2540 2633 3.055240 ACTTCCTCCTCTTCTGAGCAATG 60.055 47.826 0.00 0.00 38.93 2.82
2541 2634 2.544721 TCCTCCTCTTCTGAGCAATGT 58.455 47.619 0.00 0.00 38.93 2.71
2542 2635 3.713003 TCCTCCTCTTCTGAGCAATGTA 58.287 45.455 0.00 0.00 38.93 2.29
2543 2636 4.096681 TCCTCCTCTTCTGAGCAATGTAA 58.903 43.478 0.00 0.00 38.93 2.41
2544 2637 4.161189 TCCTCCTCTTCTGAGCAATGTAAG 59.839 45.833 0.00 0.00 38.93 2.34
2545 2638 4.081198 CCTCCTCTTCTGAGCAATGTAAGT 60.081 45.833 0.00 0.00 38.93 2.24
2550 2643 8.758829 TCCTCTTCTGAGCAATGTAAGTATTTA 58.241 33.333 0.00 0.00 38.93 1.40
2557 2650 9.371136 CTGAGCAATGTAAGTATTTAACTCTGA 57.629 33.333 0.00 0.00 37.50 3.27
2567 2660 8.485976 AAGTATTTAACTCTGATGAAGACAGC 57.514 34.615 0.00 0.00 37.50 4.40
2576 2674 2.149578 GATGAAGACAGCAGTGCTTGT 58.850 47.619 16.89 16.80 36.40 3.16
2582 2680 0.178981 ACAGCAGTGCTTGTCCCATT 60.179 50.000 16.89 0.00 36.40 3.16
2586 2684 1.069049 GCAGTGCTTGTCCCATTTTGT 59.931 47.619 8.18 0.00 0.00 2.83
2594 2692 8.374743 AGTGCTTGTCCCATTTTGTAATTTTAT 58.625 29.630 0.00 0.00 0.00 1.40
2598 2696 7.588143 TGTCCCATTTTGTAATTTTATTGCG 57.412 32.000 0.00 0.00 0.00 4.85
2610 2708 2.099141 TTATTGCGCTGCTGTCTTCT 57.901 45.000 9.73 0.00 0.00 2.85
2626 2724 3.549873 GTCTTCTACTCGCAAATGAGCTC 59.450 47.826 6.82 6.82 39.68 4.09
2629 2727 1.929836 CTACTCGCAAATGAGCTCACC 59.070 52.381 20.97 6.99 39.68 4.02
2640 2738 1.140052 TGAGCTCACCTTCAAACGGAA 59.860 47.619 13.74 0.00 0.00 4.30
2688 2795 6.908825 TCTGAACATTTCGGTTTATTCTTGG 58.091 36.000 0.00 0.00 37.33 3.61
2713 2820 1.595382 GTGCGAGGCCGAGCATTAT 60.595 57.895 26.39 0.00 45.69 1.28
2714 2821 0.319555 GTGCGAGGCCGAGCATTATA 60.320 55.000 26.39 5.11 45.69 0.98
2719 2826 2.413112 CGAGGCCGAGCATTATAACATG 59.587 50.000 0.00 0.00 38.22 3.21
2730 2837 8.764287 CGAGCATTATAACATGAAACATCACTA 58.236 33.333 0.00 0.00 0.00 2.74
2751 2858 2.409975 TCCGTTGGTCGAAGAATCAAC 58.590 47.619 0.00 0.00 44.03 3.18
2754 2861 2.411547 CGTTGGTCGAAGAATCAACTGC 60.412 50.000 0.00 0.00 44.72 4.40
2762 2869 3.416156 GAAGAATCAACTGCAGAACCCT 58.584 45.455 23.35 6.51 0.00 4.34
2763 2870 2.787994 AGAATCAACTGCAGAACCCTG 58.212 47.619 23.35 9.21 43.22 4.45
2801 2912 2.103601 TGCGGGGCTTAAGTAGTTATCC 59.896 50.000 4.02 0.00 0.00 2.59
2802 2913 2.103601 GCGGGGCTTAAGTAGTTATCCA 59.896 50.000 4.02 0.00 0.00 3.41
2803 2914 3.802675 GCGGGGCTTAAGTAGTTATCCAG 60.803 52.174 4.02 6.25 0.00 3.86
2804 2915 3.387050 CGGGGCTTAAGTAGTTATCCAGT 59.613 47.826 4.02 0.00 0.00 4.00
2806 2917 5.069516 CGGGGCTTAAGTAGTTATCCAGTAA 59.930 44.000 4.02 0.00 0.00 2.24
2807 2918 6.522946 GGGGCTTAAGTAGTTATCCAGTAAG 58.477 44.000 4.02 0.00 0.00 2.34
2809 2920 7.147602 GGGGCTTAAGTAGTTATCCAGTAAGAA 60.148 40.741 4.02 0.00 0.00 2.52
2810 2921 8.262933 GGGCTTAAGTAGTTATCCAGTAAGAAA 58.737 37.037 4.02 0.00 0.00 2.52
2811 2922 9.833917 GGCTTAAGTAGTTATCCAGTAAGAAAT 57.166 33.333 4.02 0.00 0.00 2.17
2818 2929 9.982651 GTAGTTATCCAGTAAGAAATAGCATCA 57.017 33.333 0.00 0.00 0.00 3.07
2820 2931 7.659390 AGTTATCCAGTAAGAAATAGCATCAGC 59.341 37.037 0.00 0.00 42.56 4.26
2821 2932 5.357742 TCCAGTAAGAAATAGCATCAGCA 57.642 39.130 0.00 0.00 45.49 4.41
2822 2933 5.363101 TCCAGTAAGAAATAGCATCAGCAG 58.637 41.667 0.00 0.00 45.49 4.24
2823 2934 4.024218 CCAGTAAGAAATAGCATCAGCAGC 60.024 45.833 0.00 0.00 45.49 5.25
2824 2935 4.573607 CAGTAAGAAATAGCATCAGCAGCA 59.426 41.667 0.00 0.00 45.49 4.41
2825 2936 4.815308 AGTAAGAAATAGCATCAGCAGCAG 59.185 41.667 0.00 0.00 45.49 4.24
2826 2937 3.555527 AGAAATAGCATCAGCAGCAGA 57.444 42.857 0.00 0.00 45.49 4.26
2827 2938 3.468770 AGAAATAGCATCAGCAGCAGAG 58.531 45.455 0.00 0.00 45.49 3.35
2828 2939 2.257691 AATAGCATCAGCAGCAGAGG 57.742 50.000 0.00 0.00 45.49 3.69
2829 2940 1.129917 ATAGCATCAGCAGCAGAGGT 58.870 50.000 1.18 0.00 45.49 3.85
2830 2941 0.177373 TAGCATCAGCAGCAGAGGTG 59.823 55.000 1.18 0.00 45.49 4.00
2834 2945 2.445396 TCAGCAGCAGAGGTGAAGT 58.555 52.632 0.00 0.00 42.45 3.01
2835 2946 0.761187 TCAGCAGCAGAGGTGAAGTT 59.239 50.000 0.00 0.00 42.45 2.66
2836 2947 1.141657 TCAGCAGCAGAGGTGAAGTTT 59.858 47.619 0.00 0.00 42.45 2.66
2837 2948 1.952296 CAGCAGCAGAGGTGAAGTTTT 59.048 47.619 0.00 0.00 39.26 2.43
2838 2949 1.952296 AGCAGCAGAGGTGAAGTTTTG 59.048 47.619 0.00 0.00 32.22 2.44
2839 2950 1.949525 GCAGCAGAGGTGAAGTTTTGA 59.050 47.619 0.00 0.00 32.22 2.69
2840 2951 2.031333 GCAGCAGAGGTGAAGTTTTGAG 60.031 50.000 0.00 0.00 32.22 3.02
2841 2952 3.470709 CAGCAGAGGTGAAGTTTTGAGA 58.529 45.455 0.00 0.00 32.22 3.27
2842 2953 3.249559 CAGCAGAGGTGAAGTTTTGAGAC 59.750 47.826 0.00 0.00 32.22 3.36
2843 2954 3.118261 AGCAGAGGTGAAGTTTTGAGACA 60.118 43.478 0.00 0.00 0.00 3.41
2844 2955 3.002759 GCAGAGGTGAAGTTTTGAGACAC 59.997 47.826 0.00 0.00 0.00 3.67
2845 2956 4.191544 CAGAGGTGAAGTTTTGAGACACA 58.808 43.478 0.00 0.00 33.82 3.72
2846 2957 4.635765 CAGAGGTGAAGTTTTGAGACACAA 59.364 41.667 0.00 0.00 36.65 3.33
2847 2958 5.123820 CAGAGGTGAAGTTTTGAGACACAAA 59.876 40.000 0.00 0.00 45.22 2.83
2857 2968 4.370364 TTGAGACACAAAACAAGAAGCC 57.630 40.909 0.00 0.00 35.39 4.35
2858 2969 3.351740 TGAGACACAAAACAAGAAGCCA 58.648 40.909 0.00 0.00 0.00 4.75
2859 2970 3.128589 TGAGACACAAAACAAGAAGCCAC 59.871 43.478 0.00 0.00 0.00 5.01
2860 2971 2.097466 AGACACAAAACAAGAAGCCACG 59.903 45.455 0.00 0.00 0.00 4.94
2861 2972 1.134175 ACACAAAACAAGAAGCCACGG 59.866 47.619 0.00 0.00 0.00 4.94
2862 2973 0.744281 ACAAAACAAGAAGCCACGGG 59.256 50.000 0.00 0.00 0.00 5.28
2863 2974 1.028905 CAAAACAAGAAGCCACGGGA 58.971 50.000 0.00 0.00 0.00 5.14
2864 2975 1.001378 CAAAACAAGAAGCCACGGGAG 60.001 52.381 0.00 0.00 0.00 4.30
2866 2977 1.053424 AACAAGAAGCCACGGGAGTA 58.947 50.000 0.00 0.00 44.67 2.59
2867 2978 1.053424 ACAAGAAGCCACGGGAGTAA 58.947 50.000 0.00 0.00 44.67 2.24
2868 2979 1.002087 ACAAGAAGCCACGGGAGTAAG 59.998 52.381 0.00 0.00 44.67 2.34
2869 2980 0.613777 AAGAAGCCACGGGAGTAAGG 59.386 55.000 0.00 0.00 44.67 2.69
2870 2981 1.221021 GAAGCCACGGGAGTAAGGG 59.779 63.158 0.00 0.00 44.67 3.95
2871 2982 1.229400 AAGCCACGGGAGTAAGGGA 60.229 57.895 0.00 0.00 44.67 4.20
2872 2983 1.265454 AAGCCACGGGAGTAAGGGAG 61.265 60.000 0.00 0.00 44.67 4.30
2873 2984 1.988406 GCCACGGGAGTAAGGGAGT 60.988 63.158 0.00 0.00 44.67 3.85
2874 2985 1.551019 GCCACGGGAGTAAGGGAGTT 61.551 60.000 0.00 0.00 44.67 3.01
2875 2986 0.535797 CCACGGGAGTAAGGGAGTTC 59.464 60.000 0.00 0.00 44.67 3.01
2876 2987 1.558233 CACGGGAGTAAGGGAGTTCT 58.442 55.000 0.00 0.00 44.67 3.01
2877 2988 1.477295 CACGGGAGTAAGGGAGTTCTC 59.523 57.143 0.00 0.00 44.67 2.87
2878 2989 1.112950 CGGGAGTAAGGGAGTTCTCC 58.887 60.000 10.13 10.13 43.84 3.71
2879 2990 1.618888 CGGGAGTAAGGGAGTTCTCCA 60.619 57.143 18.83 0.00 45.65 3.86
2880 2991 2.547990 GGGAGTAAGGGAGTTCTCCAA 58.452 52.381 18.83 3.06 45.65 3.53
2881 2992 3.116174 GGGAGTAAGGGAGTTCTCCAAT 58.884 50.000 18.83 10.12 45.65 3.16
2882 2993 4.296056 GGGAGTAAGGGAGTTCTCCAATA 58.704 47.826 18.83 9.26 45.65 1.90
2883 2994 4.720273 GGGAGTAAGGGAGTTCTCCAATAA 59.280 45.833 18.83 0.83 45.65 1.40
2884 2995 5.191124 GGGAGTAAGGGAGTTCTCCAATAAA 59.809 44.000 18.83 0.00 45.65 1.40
2885 2996 6.296836 GGGAGTAAGGGAGTTCTCCAATAAAA 60.297 42.308 18.83 0.00 45.65 1.52
2886 2997 7.173032 GGAGTAAGGGAGTTCTCCAATAAAAA 58.827 38.462 18.83 0.00 43.95 1.94
2887 2998 7.834681 GGAGTAAGGGAGTTCTCCAATAAAAAT 59.165 37.037 18.83 0.00 43.95 1.82
2888 2999 9.901172 GAGTAAGGGAGTTCTCCAATAAAAATA 57.099 33.333 18.83 0.12 0.00 1.40
2889 3000 9.907229 AGTAAGGGAGTTCTCCAATAAAAATAG 57.093 33.333 18.83 0.00 0.00 1.73
2890 3001 9.901172 GTAAGGGAGTTCTCCAATAAAAATAGA 57.099 33.333 18.83 0.00 0.00 1.98
2892 3003 9.997172 AAGGGAGTTCTCCAATAAAAATAGAAT 57.003 29.630 18.83 0.00 0.00 2.40
2893 3004 9.634021 AGGGAGTTCTCCAATAAAAATAGAATC 57.366 33.333 18.83 0.00 0.00 2.52
2894 3005 9.408648 GGGAGTTCTCCAATAAAAATAGAATCA 57.591 33.333 18.83 0.00 0.00 2.57
2896 3007 9.943163 GAGTTCTCCAATAAAAATAGAATCAGC 57.057 33.333 0.00 0.00 0.00 4.26
2897 3008 9.466497 AGTTCTCCAATAAAAATAGAATCAGCA 57.534 29.630 0.00 0.00 0.00 4.41
2898 3009 9.727627 GTTCTCCAATAAAAATAGAATCAGCAG 57.272 33.333 0.00 0.00 0.00 4.24
2899 3010 8.455903 TCTCCAATAAAAATAGAATCAGCAGG 57.544 34.615 0.00 0.00 0.00 4.85
2900 3011 7.503566 TCTCCAATAAAAATAGAATCAGCAGGG 59.496 37.037 0.00 0.00 0.00 4.45
2901 3012 7.353525 TCCAATAAAAATAGAATCAGCAGGGA 58.646 34.615 0.00 0.00 0.00 4.20
2902 3013 7.838696 TCCAATAAAAATAGAATCAGCAGGGAA 59.161 33.333 0.00 0.00 0.00 3.97
2903 3014 8.139989 CCAATAAAAATAGAATCAGCAGGGAAG 58.860 37.037 0.00 0.00 0.00 3.46
2904 3015 7.830099 ATAAAAATAGAATCAGCAGGGAAGG 57.170 36.000 0.00 0.00 0.00 3.46
2905 3016 4.870021 AAATAGAATCAGCAGGGAAGGT 57.130 40.909 0.00 0.00 0.00 3.50
2906 3017 3.853355 ATAGAATCAGCAGGGAAGGTG 57.147 47.619 0.00 0.00 38.31 4.00
2907 3018 0.622665 AGAATCAGCAGGGAAGGTGG 59.377 55.000 0.00 0.00 37.59 4.61
2908 3019 0.329596 GAATCAGCAGGGAAGGTGGT 59.670 55.000 0.00 0.00 37.59 4.16
2909 3020 0.038744 AATCAGCAGGGAAGGTGGTG 59.961 55.000 0.00 0.00 43.37 4.17
2910 3021 1.136329 ATCAGCAGGGAAGGTGGTGT 61.136 55.000 2.54 0.00 42.73 4.16
2911 3022 1.151450 CAGCAGGGAAGGTGGTGTT 59.849 57.895 0.00 0.00 38.37 3.32
2912 3023 0.468029 CAGCAGGGAAGGTGGTGTTT 60.468 55.000 0.00 0.00 38.37 2.83
2913 3024 0.468029 AGCAGGGAAGGTGGTGTTTG 60.468 55.000 0.00 0.00 0.00 2.93
2914 3025 0.467290 GCAGGGAAGGTGGTGTTTGA 60.467 55.000 0.00 0.00 0.00 2.69
2915 3026 1.609208 CAGGGAAGGTGGTGTTTGAG 58.391 55.000 0.00 0.00 0.00 3.02
2916 3027 1.142870 CAGGGAAGGTGGTGTTTGAGA 59.857 52.381 0.00 0.00 0.00 3.27
2917 3028 1.143073 AGGGAAGGTGGTGTTTGAGAC 59.857 52.381 0.00 0.00 0.00 3.36
2918 3029 1.133915 GGGAAGGTGGTGTTTGAGACA 60.134 52.381 0.00 0.00 35.42 3.41
2932 3043 4.857871 TTGAGACACAAAACGAGAAGTG 57.142 40.909 0.00 0.00 35.39 3.16
2933 3044 4.118093 TGAGACACAAAACGAGAAGTGA 57.882 40.909 0.00 0.00 35.97 3.41
2934 3045 4.112634 TGAGACACAAAACGAGAAGTGAG 58.887 43.478 0.00 0.00 35.97 3.51
2935 3046 3.458189 AGACACAAAACGAGAAGTGAGG 58.542 45.455 0.00 0.00 35.97 3.86
2936 3047 1.940613 ACACAAAACGAGAAGTGAGGC 59.059 47.619 0.00 0.00 35.97 4.70
2937 3048 2.213499 CACAAAACGAGAAGTGAGGCT 58.787 47.619 0.00 0.00 33.99 4.58
2938 3049 2.614057 CACAAAACGAGAAGTGAGGCTT 59.386 45.455 0.00 0.00 40.76 4.35
2947 3058 1.621992 AAGTGAGGCTTCTCTCGTGA 58.378 50.000 0.50 0.00 38.32 4.35
2948 3059 1.621992 AGTGAGGCTTCTCTCGTGAA 58.378 50.000 0.00 0.00 38.32 3.18
2949 3060 1.271102 AGTGAGGCTTCTCTCGTGAAC 59.729 52.381 0.00 0.00 38.32 3.18
2950 3061 1.000163 GTGAGGCTTCTCTCGTGAACA 60.000 52.381 0.00 0.00 38.32 3.18
2951 3062 1.686587 TGAGGCTTCTCTCGTGAACAA 59.313 47.619 0.00 0.00 38.32 2.83
2952 3063 2.102420 TGAGGCTTCTCTCGTGAACAAA 59.898 45.455 0.00 0.00 38.32 2.83
2953 3064 2.476997 GAGGCTTCTCTCGTGAACAAAC 59.523 50.000 0.00 0.00 34.77 2.93
2954 3065 2.158957 AGGCTTCTCTCGTGAACAAACA 60.159 45.455 0.00 0.00 0.00 2.83
2955 3066 2.612212 GGCTTCTCTCGTGAACAAACAA 59.388 45.455 0.00 0.00 0.00 2.83
2956 3067 3.546218 GGCTTCTCTCGTGAACAAACAAC 60.546 47.826 0.00 0.00 0.00 3.32
2957 3068 3.063452 GCTTCTCTCGTGAACAAACAACA 59.937 43.478 0.00 0.00 0.00 3.33
2958 3069 4.260784 GCTTCTCTCGTGAACAAACAACAT 60.261 41.667 0.00 0.00 0.00 2.71
2959 3070 5.050363 GCTTCTCTCGTGAACAAACAACATA 60.050 40.000 0.00 0.00 0.00 2.29
2960 3071 5.900339 TCTCTCGTGAACAAACAACATAC 57.100 39.130 0.00 0.00 0.00 2.39
2961 3072 5.597806 TCTCTCGTGAACAAACAACATACT 58.402 37.500 0.00 0.00 0.00 2.12
2962 3073 5.690409 TCTCTCGTGAACAAACAACATACTC 59.310 40.000 0.00 0.00 0.00 2.59
2963 3074 4.748102 TCTCGTGAACAAACAACATACTCC 59.252 41.667 0.00 0.00 0.00 3.85
2964 3075 4.443621 TCGTGAACAAACAACATACTCCA 58.556 39.130 0.00 0.00 0.00 3.86
2965 3076 4.271533 TCGTGAACAAACAACATACTCCAC 59.728 41.667 0.00 0.00 0.00 4.02
2966 3077 4.553938 CGTGAACAAACAACATACTCCACC 60.554 45.833 0.00 0.00 0.00 4.61
2967 3078 4.578928 GTGAACAAACAACATACTCCACCT 59.421 41.667 0.00 0.00 0.00 4.00
2968 3079 5.761234 GTGAACAAACAACATACTCCACCTA 59.239 40.000 0.00 0.00 0.00 3.08
2969 3080 6.261381 GTGAACAAACAACATACTCCACCTAA 59.739 38.462 0.00 0.00 0.00 2.69
2970 3081 6.485313 TGAACAAACAACATACTCCACCTAAG 59.515 38.462 0.00 0.00 0.00 2.18
2971 3082 6.182507 ACAAACAACATACTCCACCTAAGA 57.817 37.500 0.00 0.00 0.00 2.10
2972 3083 6.231211 ACAAACAACATACTCCACCTAAGAG 58.769 40.000 0.00 0.00 37.39 2.85
2973 3084 4.473477 ACAACATACTCCACCTAAGAGC 57.527 45.455 0.00 0.00 34.56 4.09
2974 3085 3.838317 ACAACATACTCCACCTAAGAGCA 59.162 43.478 0.00 0.00 34.56 4.26
2975 3086 4.471386 ACAACATACTCCACCTAAGAGCAT 59.529 41.667 0.00 0.00 34.56 3.79
2976 3087 4.946478 ACATACTCCACCTAAGAGCATC 57.054 45.455 0.00 0.00 34.56 3.91
2989 3100 3.503998 AGCATCTACAGCTCGGAGA 57.496 52.632 9.69 1.25 38.01 3.71
2990 3101 1.769026 AGCATCTACAGCTCGGAGAA 58.231 50.000 9.69 0.00 38.01 2.87
2991 3102 1.407258 AGCATCTACAGCTCGGAGAAC 59.593 52.381 9.69 0.00 38.01 3.01
2992 3103 1.537135 GCATCTACAGCTCGGAGAACC 60.537 57.143 9.69 0.00 34.09 3.62
2993 3104 1.751351 CATCTACAGCTCGGAGAACCA 59.249 52.381 9.69 0.00 34.09 3.67
2994 3105 1.919240 TCTACAGCTCGGAGAACCAA 58.081 50.000 9.69 0.00 34.09 3.67
2995 3106 2.244695 TCTACAGCTCGGAGAACCAAA 58.755 47.619 9.69 0.00 34.09 3.28
2996 3107 2.029290 TCTACAGCTCGGAGAACCAAAC 60.029 50.000 9.69 0.00 34.09 2.93
2997 3108 0.250338 ACAGCTCGGAGAACCAAACC 60.250 55.000 9.69 0.00 34.09 3.27
2998 3109 0.955919 CAGCTCGGAGAACCAAACCC 60.956 60.000 9.69 0.00 34.09 4.11
2999 3110 1.128188 AGCTCGGAGAACCAAACCCT 61.128 55.000 9.69 0.00 34.09 4.34
3000 3111 0.673956 GCTCGGAGAACCAAACCCTC 60.674 60.000 9.69 0.00 34.09 4.30
3001 3112 0.036294 CTCGGAGAACCAAACCCTCC 60.036 60.000 0.00 0.00 42.24 4.30
3002 3113 0.473117 TCGGAGAACCAAACCCTCCT 60.473 55.000 0.00 0.00 43.21 3.69
3003 3114 0.036294 CGGAGAACCAAACCCTCCTC 60.036 60.000 0.00 0.00 43.21 3.71
3004 3115 0.036294 GGAGAACCAAACCCTCCTCG 60.036 60.000 0.00 0.00 42.36 4.63
3005 3116 0.974383 GAGAACCAAACCCTCCTCGA 59.026 55.000 0.00 0.00 0.00 4.04
3006 3117 1.346722 GAGAACCAAACCCTCCTCGAA 59.653 52.381 0.00 0.00 0.00 3.71
3007 3118 1.985895 AGAACCAAACCCTCCTCGAAT 59.014 47.619 0.00 0.00 0.00 3.34
3008 3119 3.178865 AGAACCAAACCCTCCTCGAATA 58.821 45.455 0.00 0.00 0.00 1.75
3009 3120 3.055312 AGAACCAAACCCTCCTCGAATAC 60.055 47.826 0.00 0.00 0.00 1.89
3010 3121 1.558294 ACCAAACCCTCCTCGAATACC 59.442 52.381 0.00 0.00 0.00 2.73
3011 3122 1.472728 CCAAACCCTCCTCGAATACCG 60.473 57.143 0.00 0.00 40.25 4.02
3012 3123 0.828677 AAACCCTCCTCGAATACCGG 59.171 55.000 0.00 0.00 39.14 5.28
3013 3124 0.032813 AACCCTCCTCGAATACCGGA 60.033 55.000 9.46 0.00 39.14 5.14
3014 3125 0.467659 ACCCTCCTCGAATACCGGAG 60.468 60.000 9.46 10.05 43.11 4.63
3015 3126 1.660917 CCTCCTCGAATACCGGAGC 59.339 63.158 9.46 0.00 42.34 4.70
3016 3127 1.283181 CTCCTCGAATACCGGAGCG 59.717 63.158 9.46 6.03 38.05 5.03
3028 3139 4.344865 GGAGCGGCCAAACCCTCA 62.345 66.667 2.24 0.00 37.43 3.86
3029 3140 2.282180 GAGCGGCCAAACCCTCAA 60.282 61.111 2.24 0.00 36.36 3.02
3030 3141 1.901464 GAGCGGCCAAACCCTCAAA 60.901 57.895 2.24 0.00 36.36 2.69
3031 3142 1.228862 AGCGGCCAAACCCTCAAAT 60.229 52.632 2.24 0.00 33.26 2.32
3032 3143 1.079888 GCGGCCAAACCCTCAAATG 60.080 57.895 2.24 0.00 33.26 2.32
3033 3144 1.079888 CGGCCAAACCCTCAAATGC 60.080 57.895 2.24 0.00 33.26 3.56
3034 3145 1.535204 CGGCCAAACCCTCAAATGCT 61.535 55.000 2.24 0.00 33.26 3.79
3035 3146 0.247460 GGCCAAACCCTCAAATGCTC 59.753 55.000 0.00 0.00 0.00 4.26
3036 3147 0.109132 GCCAAACCCTCAAATGCTCG 60.109 55.000 0.00 0.00 0.00 5.03
3037 3148 1.533625 CCAAACCCTCAAATGCTCGA 58.466 50.000 0.00 0.00 0.00 4.04
3038 3149 1.470098 CCAAACCCTCAAATGCTCGAG 59.530 52.381 8.45 8.45 0.00 4.04
3039 3150 1.135575 CAAACCCTCAAATGCTCGAGC 60.136 52.381 30.42 30.42 42.50 5.03
3040 3151 1.021390 AACCCTCAAATGCTCGAGCG 61.021 55.000 30.75 17.44 45.83 5.03
3041 3152 1.153568 CCCTCAAATGCTCGAGCGA 60.154 57.895 30.75 20.56 45.83 4.93
3042 3153 0.740868 CCCTCAAATGCTCGAGCGAA 60.741 55.000 30.75 16.38 45.83 4.70
3043 3154 1.293924 CCTCAAATGCTCGAGCGAAT 58.706 50.000 30.75 17.98 45.83 3.34
3044 3155 1.260033 CCTCAAATGCTCGAGCGAATC 59.740 52.381 30.75 6.48 45.83 2.52
3045 3156 1.260033 CTCAAATGCTCGAGCGAATCC 59.740 52.381 30.75 5.72 45.83 3.01
3046 3157 1.009078 CAAATGCTCGAGCGAATCCA 58.991 50.000 30.75 14.04 45.83 3.41
3047 3158 1.398041 CAAATGCTCGAGCGAATCCAA 59.602 47.619 30.75 13.27 45.83 3.53
3048 3159 1.009829 AATGCTCGAGCGAATCCAAC 58.990 50.000 30.75 3.44 45.83 3.77
3049 3160 0.811616 ATGCTCGAGCGAATCCAACC 60.812 55.000 30.75 2.68 45.83 3.77
3050 3161 1.447838 GCTCGAGCGAATCCAACCA 60.448 57.895 23.61 0.00 0.00 3.67
3051 3162 1.424493 GCTCGAGCGAATCCAACCAG 61.424 60.000 23.61 0.00 0.00 4.00
3052 3163 0.108615 CTCGAGCGAATCCAACCAGT 60.109 55.000 0.00 0.00 0.00 4.00
3053 3164 0.108804 TCGAGCGAATCCAACCAGTC 60.109 55.000 0.00 0.00 0.00 3.51
3054 3165 0.389817 CGAGCGAATCCAACCAGTCA 60.390 55.000 0.00 0.00 0.00 3.41
3055 3166 1.740380 CGAGCGAATCCAACCAGTCAT 60.740 52.381 0.00 0.00 0.00 3.06
3056 3167 2.481276 CGAGCGAATCCAACCAGTCATA 60.481 50.000 0.00 0.00 0.00 2.15
3057 3168 3.531538 GAGCGAATCCAACCAGTCATAA 58.468 45.455 0.00 0.00 0.00 1.90
3058 3169 4.130118 GAGCGAATCCAACCAGTCATAAT 58.870 43.478 0.00 0.00 0.00 1.28
3059 3170 4.526970 AGCGAATCCAACCAGTCATAATT 58.473 39.130 0.00 0.00 0.00 1.40
3060 3171 4.949856 AGCGAATCCAACCAGTCATAATTT 59.050 37.500 0.00 0.00 0.00 1.82
3061 3172 5.418840 AGCGAATCCAACCAGTCATAATTTT 59.581 36.000 0.00 0.00 0.00 1.82
3062 3173 5.743872 GCGAATCCAACCAGTCATAATTTTC 59.256 40.000 0.00 0.00 0.00 2.29
3063 3174 5.965334 CGAATCCAACCAGTCATAATTTTCG 59.035 40.000 0.00 0.00 0.00 3.46
3064 3175 6.183360 CGAATCCAACCAGTCATAATTTTCGA 60.183 38.462 0.00 0.00 34.61 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.125316 CAGCACAGACCGGAGTTTATTTC 59.875 47.826 9.46 0.00 0.00 2.17
66 67 4.008933 GCCAGCACAGACCGGAGT 62.009 66.667 9.46 0.00 0.00 3.85
77 78 0.037697 AACATTCTACGACGCCAGCA 60.038 50.000 0.00 0.00 0.00 4.41
78 79 0.370273 CAACATTCTACGACGCCAGC 59.630 55.000 0.00 0.00 0.00 4.85
168 169 1.376609 GATTGTAGGTGGCAAGCGGG 61.377 60.000 0.00 0.00 0.00 6.13
201 202 6.128526 GCAATGCTCCTATATTCTAACGGAAC 60.129 42.308 0.00 0.00 36.70 3.62
254 255 3.063084 GCTCGGGTCAGTCGGACT 61.063 66.667 4.45 4.45 46.16 3.85
255 256 2.637383 AAGCTCGGGTCAGTCGGAC 61.637 63.158 0.00 0.00 46.20 4.79
256 257 2.282958 AAGCTCGGGTCAGTCGGA 60.283 61.111 0.00 0.00 0.00 4.55
257 258 2.125912 CAAGCTCGGGTCAGTCGG 60.126 66.667 0.00 0.00 0.00 4.79
258 259 1.153939 CTCAAGCTCGGGTCAGTCG 60.154 63.158 0.00 0.00 0.00 4.18
272 273 1.682684 GGAGGAGCTCCGGTCTCAA 60.683 63.158 26.95 0.00 41.08 3.02
332 333 2.518349 CCGGTGTTTGGTGTGGCT 60.518 61.111 0.00 0.00 0.00 4.75
369 370 9.490379 TTGGTTTTCAGTTTTAAACAAAGCTTA 57.510 25.926 10.60 2.87 36.27 3.09
370 371 7.971183 TGGTTTTCAGTTTTAAACAAAGCTT 57.029 28.000 10.60 0.00 36.27 3.74
373 374 9.937175 TGTTTTGGTTTTCAGTTTTAAACAAAG 57.063 25.926 10.60 0.16 36.27 2.77
395 396 2.238521 CATGGCACTAACTGGGTGTTT 58.761 47.619 0.00 0.00 39.89 2.83
400 401 0.527565 GTTGCATGGCACTAACTGGG 59.472 55.000 0.00 0.00 38.71 4.45
447 448 1.336517 TGCTTGTCGTGGTACTACTGC 60.337 52.381 7.83 4.90 0.00 4.40
448 449 2.030185 ACTGCTTGTCGTGGTACTACTG 60.030 50.000 7.83 1.74 0.00 2.74
449 450 2.236766 ACTGCTTGTCGTGGTACTACT 58.763 47.619 7.83 0.00 0.00 2.57
472 482 4.514569 CGCCGGGTTTCGATTGCG 62.515 66.667 2.18 0.00 42.43 4.85
524 535 1.667724 GCTCCACGATGATGAAAGGTG 59.332 52.381 0.00 0.00 0.00 4.00
552 576 0.455410 GCGGGCAATTTACAGATGCA 59.545 50.000 0.00 0.00 41.80 3.96
582 606 2.422871 CTAGCACTAGACCCGTAGGCC 61.423 61.905 0.00 0.00 40.35 5.19
589 613 1.457009 CGGGAGCTAGCACTAGACCC 61.457 65.000 18.83 20.74 42.38 4.46
590 614 2.034607 CGGGAGCTAGCACTAGACC 58.965 63.158 18.83 6.31 35.21 3.85
610 656 0.821711 CAAGTTTGGAAGTGGGCCGA 60.822 55.000 0.00 0.00 0.00 5.54
617 663 1.734388 GCGGTGGCAAGTTTGGAAGT 61.734 55.000 0.00 0.00 39.62 3.01
656 702 4.035102 GGTGGAGGGTGGACTGGC 62.035 72.222 0.00 0.00 0.00 4.85
682 728 0.936297 CAAGACAAAAGCTGTGGCGC 60.936 55.000 0.00 0.00 44.37 6.53
712 758 1.237285 ACTGGTAAAAGCAGCGGCAG 61.237 55.000 12.44 0.00 46.94 4.85
827 876 3.775654 GGAGTGAGGACTGGGGCG 61.776 72.222 0.00 0.00 30.16 6.13
831 880 0.319728 CAGTGTGGAGTGAGGACTGG 59.680 60.000 0.00 0.00 32.13 4.00
832 881 0.320247 GCAGTGTGGAGTGAGGACTG 60.320 60.000 0.00 0.00 37.65 3.51
833 882 1.810606 CGCAGTGTGGAGTGAGGACT 61.811 60.000 0.00 0.00 33.98 3.85
834 883 1.373497 CGCAGTGTGGAGTGAGGAC 60.373 63.158 0.00 0.00 0.00 3.85
838 903 4.662961 CGGCGCAGTGTGGAGTGA 62.663 66.667 10.83 0.00 0.00 3.41
889 954 3.623453 GCTGGGATCCCATAAATAGAGCC 60.623 52.174 33.89 11.55 46.15 4.70
914 979 4.687215 TGCTGTGCTCTGGCGTCC 62.687 66.667 0.00 0.00 42.25 4.79
916 981 3.541950 ATGTGCTGTGCTCTGGCGT 62.542 57.895 0.00 0.00 42.25 5.68
918 983 2.404995 GGATGTGCTGTGCTCTGGC 61.405 63.158 0.00 0.00 39.26 4.85
923 988 2.034687 GTGGGGATGTGCTGTGCT 59.965 61.111 0.00 0.00 0.00 4.40
924 989 3.064324 GGTGGGGATGTGCTGTGC 61.064 66.667 0.00 0.00 0.00 4.57
925 990 2.747460 CGGTGGGGATGTGCTGTG 60.747 66.667 0.00 0.00 0.00 3.66
926 991 4.722700 GCGGTGGGGATGTGCTGT 62.723 66.667 0.00 0.00 0.00 4.40
1259 1329 5.482908 AGATGCACCAAGAAACAGTACTAG 58.517 41.667 0.00 0.00 0.00 2.57
1403 1473 0.468226 TGAGGCCGTTGTTGAAGAGT 59.532 50.000 0.00 0.00 0.00 3.24
1543 1613 4.233635 CGGCGTCGGAGTACTCGG 62.234 72.222 21.18 21.18 0.00 4.63
1694 1764 0.825010 ACAGTTCTTGGGCAGGCAAG 60.825 55.000 0.00 0.00 0.00 4.01
1698 1768 2.558359 CCTTTAACAGTTCTTGGGCAGG 59.442 50.000 0.00 0.00 0.00 4.85
1715 1785 1.202651 CCGTCAGTGTCAACTCCCTTT 60.203 52.381 0.00 0.00 32.98 3.11
1738 1808 3.188786 GCACGACCAGATCCACGC 61.189 66.667 0.00 0.00 0.00 5.34
1995 2068 2.660552 ACGGCGTTGTTGGAGACG 60.661 61.111 6.77 0.00 42.93 4.18
2058 2131 4.819761 GATGCGGGCGCTCAGTGA 62.820 66.667 8.62 0.00 42.51 3.41
2125 2198 2.126580 CGGGAGGTTGACGACGAC 60.127 66.667 0.00 0.00 0.00 4.34
2144 2217 2.435586 CTTCCCAGCACGCTCCAG 60.436 66.667 0.00 0.00 0.00 3.86
2207 2281 1.364171 CTACAGCCTCGAATCCCCG 59.636 63.158 0.00 0.00 0.00 5.73
2215 2289 0.818296 AACTACCTGCTACAGCCTCG 59.182 55.000 0.00 0.00 41.18 4.63
2218 2292 1.202545 GCCTAACTACCTGCTACAGCC 60.203 57.143 0.00 0.00 41.18 4.85
2221 2295 2.544844 AGGCCTAACTACCTGCTACA 57.455 50.000 1.29 0.00 34.07 2.74
2356 2430 1.022451 GGCGTCGGTTAATCAAGCCA 61.022 55.000 10.21 0.00 42.37 4.75
2444 2518 1.062365 CAAGCACACACCACACACG 59.938 57.895 0.00 0.00 0.00 4.49
2450 2543 2.120282 CACAGCCAAGCACACACCA 61.120 57.895 0.00 0.00 0.00 4.17
2451 2544 1.174712 ATCACAGCCAAGCACACACC 61.175 55.000 0.00 0.00 0.00 4.16
2525 2618 7.856145 AAATACTTACATTGCTCAGAAGAGG 57.144 36.000 0.00 0.00 42.33 3.69
2527 2620 9.944376 AGTTAAATACTTACATTGCTCAGAAGA 57.056 29.630 0.00 0.00 31.29 2.87
2530 2623 9.371136 CAGAGTTAAATACTTACATTGCTCAGA 57.629 33.333 0.00 0.00 37.17 3.27
2541 2634 9.587772 GCTGTCTTCATCAGAGTTAAATACTTA 57.412 33.333 0.00 0.00 37.17 2.24
2542 2635 8.097038 TGCTGTCTTCATCAGAGTTAAATACTT 58.903 33.333 0.00 0.00 37.17 2.24
2543 2636 7.615403 TGCTGTCTTCATCAGAGTTAAATACT 58.385 34.615 0.00 0.00 40.71 2.12
2544 2637 7.547370 ACTGCTGTCTTCATCAGAGTTAAATAC 59.453 37.037 6.16 0.00 39.34 1.89
2545 2638 7.547019 CACTGCTGTCTTCATCAGAGTTAAATA 59.453 37.037 6.16 0.00 39.34 1.40
2550 2643 3.661944 CACTGCTGTCTTCATCAGAGTT 58.338 45.455 6.16 0.00 39.34 3.01
2557 2650 2.149578 GACAAGCACTGCTGTCTTCAT 58.850 47.619 18.69 0.00 39.62 2.57
2576 2674 6.312426 CAGCGCAATAAAATTACAAAATGGGA 59.688 34.615 11.47 0.00 0.00 4.37
2582 2680 5.226396 ACAGCAGCGCAATAAAATTACAAA 58.774 33.333 11.47 0.00 0.00 2.83
2586 2684 4.963276 AGACAGCAGCGCAATAAAATTA 57.037 36.364 11.47 0.00 0.00 1.40
2594 2692 0.318441 AGTAGAAGACAGCAGCGCAA 59.682 50.000 11.47 0.00 0.00 4.85
2598 2696 0.109086 TGCGAGTAGAAGACAGCAGC 60.109 55.000 0.00 0.00 38.50 5.25
2610 2708 1.550524 AGGTGAGCTCATTTGCGAGTA 59.449 47.619 21.47 0.00 38.13 2.59
2640 2738 2.158957 TCGACCAGAAAAGTTGTCTGCT 60.159 45.455 16.54 4.07 41.04 4.24
2646 2744 5.673337 TCAGAAATCGACCAGAAAAGTTG 57.327 39.130 0.00 0.00 0.00 3.16
2703 2810 6.852853 GTGATGTTTCATGTTATAATGCTCGG 59.147 38.462 0.00 0.00 33.56 4.63
2711 2818 9.040939 CAACGGATAGTGATGTTTCATGTTATA 57.959 33.333 0.00 0.00 33.56 0.98
2713 2820 6.315144 CCAACGGATAGTGATGTTTCATGTTA 59.685 38.462 0.00 0.00 33.56 2.41
2714 2821 5.123820 CCAACGGATAGTGATGTTTCATGTT 59.876 40.000 0.00 0.00 33.56 2.71
2719 2826 3.306166 CGACCAACGGATAGTGATGTTTC 59.694 47.826 0.00 0.00 38.46 2.78
2730 2837 3.000727 GTTGATTCTTCGACCAACGGAT 58.999 45.455 0.00 0.00 42.82 4.18
2784 2895 7.357429 TCTTACTGGATAACTACTTAAGCCC 57.643 40.000 1.29 0.00 0.00 5.19
2801 2912 4.573607 TGCTGCTGATGCTATTTCTTACTG 59.426 41.667 0.00 0.00 40.48 2.74
2802 2913 4.774124 TGCTGCTGATGCTATTTCTTACT 58.226 39.130 0.00 0.00 40.48 2.24
2803 2914 4.813161 TCTGCTGCTGATGCTATTTCTTAC 59.187 41.667 5.03 0.00 40.48 2.34
2804 2915 5.027293 TCTGCTGCTGATGCTATTTCTTA 57.973 39.130 5.03 0.00 40.48 2.10
2806 2917 3.468770 CTCTGCTGCTGATGCTATTTCT 58.531 45.455 9.72 0.00 40.48 2.52
2807 2918 2.548904 CCTCTGCTGCTGATGCTATTTC 59.451 50.000 9.72 0.00 40.48 2.17
2809 2920 1.489649 ACCTCTGCTGCTGATGCTATT 59.510 47.619 9.72 0.00 40.48 1.73
2810 2921 1.129917 ACCTCTGCTGCTGATGCTAT 58.870 50.000 9.72 0.00 40.48 2.97
2811 2922 0.177373 CACCTCTGCTGCTGATGCTA 59.823 55.000 9.72 0.00 40.48 3.49
2812 2923 1.078356 CACCTCTGCTGCTGATGCT 60.078 57.895 9.72 0.00 40.48 3.79
2813 2924 0.675837 TTCACCTCTGCTGCTGATGC 60.676 55.000 9.72 0.00 40.20 3.91
2814 2925 1.338864 ACTTCACCTCTGCTGCTGATG 60.339 52.381 9.72 9.64 0.00 3.07
2815 2926 0.982704 ACTTCACCTCTGCTGCTGAT 59.017 50.000 9.72 0.00 0.00 2.90
2816 2927 0.761187 AACTTCACCTCTGCTGCTGA 59.239 50.000 8.95 8.95 0.00 4.26
2817 2928 1.602311 AAACTTCACCTCTGCTGCTG 58.398 50.000 0.00 0.00 0.00 4.41
2818 2929 1.952296 CAAAACTTCACCTCTGCTGCT 59.048 47.619 0.00 0.00 0.00 4.24
2819 2930 1.949525 TCAAAACTTCACCTCTGCTGC 59.050 47.619 0.00 0.00 0.00 5.25
2820 2931 3.249559 GTCTCAAAACTTCACCTCTGCTG 59.750 47.826 0.00 0.00 0.00 4.41
2821 2932 3.118261 TGTCTCAAAACTTCACCTCTGCT 60.118 43.478 0.00 0.00 0.00 4.24
2822 2933 3.002759 GTGTCTCAAAACTTCACCTCTGC 59.997 47.826 0.00 0.00 0.00 4.26
2823 2934 4.191544 TGTGTCTCAAAACTTCACCTCTG 58.808 43.478 0.00 0.00 0.00 3.35
2824 2935 4.487714 TGTGTCTCAAAACTTCACCTCT 57.512 40.909 0.00 0.00 0.00 3.69
2825 2936 5.560966 TTTGTGTCTCAAAACTTCACCTC 57.439 39.130 0.00 0.00 42.18 3.85
2826 2937 5.975693 TTTTGTGTCTCAAAACTTCACCT 57.024 34.783 8.38 0.00 46.77 4.00
2835 2946 4.219507 TGGCTTCTTGTTTTGTGTCTCAAA 59.780 37.500 0.00 0.00 43.24 2.69
2836 2947 3.761218 TGGCTTCTTGTTTTGTGTCTCAA 59.239 39.130 0.00 0.00 0.00 3.02
2837 2948 3.128589 GTGGCTTCTTGTTTTGTGTCTCA 59.871 43.478 0.00 0.00 0.00 3.27
2838 2949 3.695816 GTGGCTTCTTGTTTTGTGTCTC 58.304 45.455 0.00 0.00 0.00 3.36
2839 2950 2.097466 CGTGGCTTCTTGTTTTGTGTCT 59.903 45.455 0.00 0.00 0.00 3.41
2840 2951 2.450160 CGTGGCTTCTTGTTTTGTGTC 58.550 47.619 0.00 0.00 0.00 3.67
2841 2952 1.134175 CCGTGGCTTCTTGTTTTGTGT 59.866 47.619 0.00 0.00 0.00 3.72
2842 2953 1.535860 CCCGTGGCTTCTTGTTTTGTG 60.536 52.381 0.00 0.00 0.00 3.33
2843 2954 0.744281 CCCGTGGCTTCTTGTTTTGT 59.256 50.000 0.00 0.00 0.00 2.83
2844 2955 1.001378 CTCCCGTGGCTTCTTGTTTTG 60.001 52.381 0.00 0.00 0.00 2.44
2845 2956 1.318576 CTCCCGTGGCTTCTTGTTTT 58.681 50.000 0.00 0.00 0.00 2.43
2846 2957 0.182775 ACTCCCGTGGCTTCTTGTTT 59.817 50.000 0.00 0.00 0.00 2.83
2847 2958 1.053424 TACTCCCGTGGCTTCTTGTT 58.947 50.000 0.00 0.00 0.00 2.83
2848 2959 1.002087 CTTACTCCCGTGGCTTCTTGT 59.998 52.381 0.00 0.00 0.00 3.16
2849 2960 1.676014 CCTTACTCCCGTGGCTTCTTG 60.676 57.143 0.00 0.00 0.00 3.02
2850 2961 0.613777 CCTTACTCCCGTGGCTTCTT 59.386 55.000 0.00 0.00 0.00 2.52
2851 2962 1.265454 CCCTTACTCCCGTGGCTTCT 61.265 60.000 0.00 0.00 0.00 2.85
2852 2963 1.221021 CCCTTACTCCCGTGGCTTC 59.779 63.158 0.00 0.00 0.00 3.86
2853 2964 1.229400 TCCCTTACTCCCGTGGCTT 60.229 57.895 0.00 0.00 0.00 4.35
2854 2965 1.686110 CTCCCTTACTCCCGTGGCT 60.686 63.158 0.00 0.00 0.00 4.75
2855 2966 1.551019 AACTCCCTTACTCCCGTGGC 61.551 60.000 0.00 0.00 0.00 5.01
2856 2967 0.535797 GAACTCCCTTACTCCCGTGG 59.464 60.000 0.00 0.00 0.00 4.94
2857 2968 1.477295 GAGAACTCCCTTACTCCCGTG 59.523 57.143 0.00 0.00 0.00 4.94
2858 2969 1.619160 GGAGAACTCCCTTACTCCCGT 60.619 57.143 9.50 0.00 43.94 5.28
2859 2970 1.112950 GGAGAACTCCCTTACTCCCG 58.887 60.000 9.50 0.00 43.94 5.14
2870 2981 9.943163 GCTGATTCTATTTTTATTGGAGAACTC 57.057 33.333 0.00 0.00 0.00 3.01
2871 2982 9.466497 TGCTGATTCTATTTTTATTGGAGAACT 57.534 29.630 0.00 0.00 0.00 3.01
2872 2983 9.727627 CTGCTGATTCTATTTTTATTGGAGAAC 57.272 33.333 0.00 0.00 0.00 3.01
2873 2984 8.906867 CCTGCTGATTCTATTTTTATTGGAGAA 58.093 33.333 0.00 0.00 0.00 2.87
2874 2985 7.503566 CCCTGCTGATTCTATTTTTATTGGAGA 59.496 37.037 0.00 0.00 0.00 3.71
2875 2986 7.503566 TCCCTGCTGATTCTATTTTTATTGGAG 59.496 37.037 0.00 0.00 0.00 3.86
2876 2987 7.353525 TCCCTGCTGATTCTATTTTTATTGGA 58.646 34.615 0.00 0.00 0.00 3.53
2877 2988 7.587037 TCCCTGCTGATTCTATTTTTATTGG 57.413 36.000 0.00 0.00 0.00 3.16
2878 2989 8.139989 CCTTCCCTGCTGATTCTATTTTTATTG 58.860 37.037 0.00 0.00 0.00 1.90
2879 2990 7.841222 ACCTTCCCTGCTGATTCTATTTTTATT 59.159 33.333 0.00 0.00 0.00 1.40
2880 2991 7.286316 CACCTTCCCTGCTGATTCTATTTTTAT 59.714 37.037 0.00 0.00 0.00 1.40
2881 2992 6.603201 CACCTTCCCTGCTGATTCTATTTTTA 59.397 38.462 0.00 0.00 0.00 1.52
2882 2993 5.420104 CACCTTCCCTGCTGATTCTATTTTT 59.580 40.000 0.00 0.00 0.00 1.94
2883 2994 4.952335 CACCTTCCCTGCTGATTCTATTTT 59.048 41.667 0.00 0.00 0.00 1.82
2884 2995 4.530875 CACCTTCCCTGCTGATTCTATTT 58.469 43.478 0.00 0.00 0.00 1.40
2885 2996 3.117738 CCACCTTCCCTGCTGATTCTATT 60.118 47.826 0.00 0.00 0.00 1.73
2886 2997 2.441001 CCACCTTCCCTGCTGATTCTAT 59.559 50.000 0.00 0.00 0.00 1.98
2887 2998 1.839994 CCACCTTCCCTGCTGATTCTA 59.160 52.381 0.00 0.00 0.00 2.10
2888 2999 0.622665 CCACCTTCCCTGCTGATTCT 59.377 55.000 0.00 0.00 0.00 2.40
2889 3000 0.329596 ACCACCTTCCCTGCTGATTC 59.670 55.000 0.00 0.00 0.00 2.52
2890 3001 0.038744 CACCACCTTCCCTGCTGATT 59.961 55.000 0.00 0.00 0.00 2.57
2891 3002 1.136329 ACACCACCTTCCCTGCTGAT 61.136 55.000 0.00 0.00 0.00 2.90
2892 3003 1.352622 AACACCACCTTCCCTGCTGA 61.353 55.000 0.00 0.00 0.00 4.26
2893 3004 0.468029 AAACACCACCTTCCCTGCTG 60.468 55.000 0.00 0.00 0.00 4.41
2894 3005 0.468029 CAAACACCACCTTCCCTGCT 60.468 55.000 0.00 0.00 0.00 4.24
2895 3006 0.467290 TCAAACACCACCTTCCCTGC 60.467 55.000 0.00 0.00 0.00 4.85
2896 3007 1.142870 TCTCAAACACCACCTTCCCTG 59.857 52.381 0.00 0.00 0.00 4.45
2897 3008 1.143073 GTCTCAAACACCACCTTCCCT 59.857 52.381 0.00 0.00 0.00 4.20
2898 3009 1.133915 TGTCTCAAACACCACCTTCCC 60.134 52.381 0.00 0.00 31.20 3.97
2899 3010 2.341846 TGTCTCAAACACCACCTTCC 57.658 50.000 0.00 0.00 31.20 3.46
2908 3019 4.693566 ACTTCTCGTTTTGTGTCTCAAACA 59.306 37.500 0.00 0.00 44.39 2.83
2909 3020 5.022021 CACTTCTCGTTTTGTGTCTCAAAC 58.978 41.667 0.00 0.00 44.39 2.93
2910 3021 4.932799 TCACTTCTCGTTTTGTGTCTCAAA 59.067 37.500 0.00 0.00 43.24 2.69
2911 3022 4.500127 TCACTTCTCGTTTTGTGTCTCAA 58.500 39.130 0.00 0.00 0.00 3.02
2912 3023 4.112634 CTCACTTCTCGTTTTGTGTCTCA 58.887 43.478 0.00 0.00 0.00 3.27
2913 3024 3.491267 CCTCACTTCTCGTTTTGTGTCTC 59.509 47.826 0.00 0.00 0.00 3.36
2914 3025 3.458189 CCTCACTTCTCGTTTTGTGTCT 58.542 45.455 0.00 0.00 0.00 3.41
2915 3026 2.032808 GCCTCACTTCTCGTTTTGTGTC 60.033 50.000 0.00 0.00 0.00 3.67
2916 3027 1.940613 GCCTCACTTCTCGTTTTGTGT 59.059 47.619 0.00 0.00 0.00 3.72
2917 3028 2.213499 AGCCTCACTTCTCGTTTTGTG 58.787 47.619 0.00 0.00 0.00 3.33
2918 3029 2.622064 AGCCTCACTTCTCGTTTTGT 57.378 45.000 0.00 0.00 0.00 2.83
2928 3039 1.621992 TCACGAGAGAAGCCTCACTT 58.378 50.000 0.00 0.00 41.87 3.16
2929 3040 1.271102 GTTCACGAGAGAAGCCTCACT 59.729 52.381 0.00 0.00 41.87 3.41
2930 3041 1.000163 TGTTCACGAGAGAAGCCTCAC 60.000 52.381 0.00 0.00 41.87 3.51
2931 3042 1.328279 TGTTCACGAGAGAAGCCTCA 58.672 50.000 0.00 0.00 41.87 3.86
2932 3043 2.440539 TTGTTCACGAGAGAAGCCTC 57.559 50.000 0.00 0.00 39.72 4.70
2933 3044 2.158957 TGTTTGTTCACGAGAGAAGCCT 60.159 45.455 0.00 0.00 0.00 4.58
2934 3045 2.210116 TGTTTGTTCACGAGAGAAGCC 58.790 47.619 0.00 0.00 0.00 4.35
2935 3046 3.063452 TGTTGTTTGTTCACGAGAGAAGC 59.937 43.478 0.00 0.00 0.00 3.86
2936 3047 4.857871 TGTTGTTTGTTCACGAGAGAAG 57.142 40.909 0.00 0.00 0.00 2.85
2937 3048 6.046593 AGTATGTTGTTTGTTCACGAGAGAA 58.953 36.000 0.00 0.00 0.00 2.87
2938 3049 5.597806 AGTATGTTGTTTGTTCACGAGAGA 58.402 37.500 0.00 0.00 0.00 3.10
2939 3050 5.107453 GGAGTATGTTGTTTGTTCACGAGAG 60.107 44.000 0.00 0.00 0.00 3.20
2940 3051 4.748102 GGAGTATGTTGTTTGTTCACGAGA 59.252 41.667 0.00 0.00 0.00 4.04
2941 3052 4.509970 TGGAGTATGTTGTTTGTTCACGAG 59.490 41.667 0.00 0.00 0.00 4.18
2942 3053 4.271533 GTGGAGTATGTTGTTTGTTCACGA 59.728 41.667 0.00 0.00 0.00 4.35
2943 3054 4.523813 GTGGAGTATGTTGTTTGTTCACG 58.476 43.478 0.00 0.00 0.00 4.35
2944 3055 4.578928 AGGTGGAGTATGTTGTTTGTTCAC 59.421 41.667 0.00 0.00 0.00 3.18
2945 3056 4.787551 AGGTGGAGTATGTTGTTTGTTCA 58.212 39.130 0.00 0.00 0.00 3.18
2946 3057 6.708949 TCTTAGGTGGAGTATGTTGTTTGTTC 59.291 38.462 0.00 0.00 0.00 3.18
2947 3058 6.597562 TCTTAGGTGGAGTATGTTGTTTGTT 58.402 36.000 0.00 0.00 0.00 2.83
2948 3059 6.182507 TCTTAGGTGGAGTATGTTGTTTGT 57.817 37.500 0.00 0.00 0.00 2.83
2949 3060 5.122396 GCTCTTAGGTGGAGTATGTTGTTTG 59.878 44.000 0.00 0.00 33.73 2.93
2950 3061 5.221843 TGCTCTTAGGTGGAGTATGTTGTTT 60.222 40.000 0.00 0.00 33.73 2.83
2951 3062 4.286032 TGCTCTTAGGTGGAGTATGTTGTT 59.714 41.667 0.00 0.00 33.73 2.83
2952 3063 3.838317 TGCTCTTAGGTGGAGTATGTTGT 59.162 43.478 0.00 0.00 33.73 3.32
2953 3064 4.471904 TGCTCTTAGGTGGAGTATGTTG 57.528 45.455 0.00 0.00 33.73 3.33
2954 3065 4.965532 AGATGCTCTTAGGTGGAGTATGTT 59.034 41.667 0.00 0.00 36.54 2.71
2955 3066 4.551671 AGATGCTCTTAGGTGGAGTATGT 58.448 43.478 0.00 0.00 36.54 2.29
2956 3067 5.536538 TGTAGATGCTCTTAGGTGGAGTATG 59.463 44.000 0.00 0.00 36.54 2.39
2957 3068 5.706447 TGTAGATGCTCTTAGGTGGAGTAT 58.294 41.667 0.00 0.00 38.48 2.12
2958 3069 5.125367 TGTAGATGCTCTTAGGTGGAGTA 57.875 43.478 0.00 0.00 33.73 2.59
2959 3070 3.957497 CTGTAGATGCTCTTAGGTGGAGT 59.043 47.826 0.00 0.00 33.73 3.85
2960 3071 3.243704 GCTGTAGATGCTCTTAGGTGGAG 60.244 52.174 0.00 0.00 0.00 3.86
2961 3072 2.695666 GCTGTAGATGCTCTTAGGTGGA 59.304 50.000 0.00 0.00 0.00 4.02
2962 3073 2.697751 AGCTGTAGATGCTCTTAGGTGG 59.302 50.000 0.00 0.00 35.67 4.61
2971 3082 1.407258 GTTCTCCGAGCTGTAGATGCT 59.593 52.381 0.00 0.00 44.24 3.79
2972 3083 1.537135 GGTTCTCCGAGCTGTAGATGC 60.537 57.143 0.00 0.00 0.00 3.91
2973 3084 1.751351 TGGTTCTCCGAGCTGTAGATG 59.249 52.381 0.00 0.00 36.30 2.90
2974 3085 2.145397 TGGTTCTCCGAGCTGTAGAT 57.855 50.000 0.00 0.00 36.30 1.98
2975 3086 1.919240 TTGGTTCTCCGAGCTGTAGA 58.081 50.000 0.00 0.00 36.30 2.59
2976 3087 2.338500 GTTTGGTTCTCCGAGCTGTAG 58.662 52.381 0.00 0.00 36.30 2.74
2977 3088 1.001633 GGTTTGGTTCTCCGAGCTGTA 59.998 52.381 0.00 0.00 36.30 2.74
2978 3089 0.250338 GGTTTGGTTCTCCGAGCTGT 60.250 55.000 0.00 0.00 36.30 4.40
2979 3090 0.955919 GGGTTTGGTTCTCCGAGCTG 60.956 60.000 0.00 0.00 36.30 4.24
2980 3091 1.128188 AGGGTTTGGTTCTCCGAGCT 61.128 55.000 0.00 0.00 36.30 4.09
2981 3092 0.673956 GAGGGTTTGGTTCTCCGAGC 60.674 60.000 0.00 0.00 36.30 5.03
2982 3093 0.036294 GGAGGGTTTGGTTCTCCGAG 60.036 60.000 0.00 0.00 37.85 4.63
2983 3094 2.063774 GGAGGGTTTGGTTCTCCGA 58.936 57.895 0.00 0.00 37.85 4.55
2984 3095 4.716003 GGAGGGTTTGGTTCTCCG 57.284 61.111 0.00 0.00 37.85 4.63
2985 3096 0.036294 CGAGGAGGGTTTGGTTCTCC 60.036 60.000 0.00 0.00 45.46 3.71
2986 3097 0.974383 TCGAGGAGGGTTTGGTTCTC 59.026 55.000 0.00 0.00 0.00 2.87
2987 3098 1.430992 TTCGAGGAGGGTTTGGTTCT 58.569 50.000 0.00 0.00 0.00 3.01
2988 3099 2.491675 ATTCGAGGAGGGTTTGGTTC 57.508 50.000 0.00 0.00 0.00 3.62
2989 3100 2.026542 GGTATTCGAGGAGGGTTTGGTT 60.027 50.000 0.00 0.00 0.00 3.67
2990 3101 1.558294 GGTATTCGAGGAGGGTTTGGT 59.442 52.381 0.00 0.00 0.00 3.67
2991 3102 1.472728 CGGTATTCGAGGAGGGTTTGG 60.473 57.143 0.00 0.00 42.43 3.28
2992 3103 1.472728 CCGGTATTCGAGGAGGGTTTG 60.473 57.143 0.00 0.00 42.43 2.93
2993 3104 0.828677 CCGGTATTCGAGGAGGGTTT 59.171 55.000 0.00 0.00 42.43 3.27
2994 3105 0.032813 TCCGGTATTCGAGGAGGGTT 60.033 55.000 0.00 0.00 42.43 4.11
2995 3106 0.467659 CTCCGGTATTCGAGGAGGGT 60.468 60.000 9.30 0.00 45.77 4.34
2996 3107 2.342478 CTCCGGTATTCGAGGAGGG 58.658 63.158 9.30 0.00 45.77 4.30
2999 3110 2.191513 CCGCTCCGGTATTCGAGGA 61.192 63.158 0.00 0.00 42.73 3.71
3000 3111 2.335369 CCGCTCCGGTATTCGAGG 59.665 66.667 0.00 0.00 42.73 4.63
3011 3122 3.860930 TTGAGGGTTTGGCCGCTCC 62.861 63.158 0.00 0.00 38.44 4.70
3012 3123 1.250840 ATTTGAGGGTTTGGCCGCTC 61.251 55.000 0.00 0.00 38.44 5.03
3013 3124 1.228862 ATTTGAGGGTTTGGCCGCT 60.229 52.632 0.00 0.00 38.44 5.52
3014 3125 1.079888 CATTTGAGGGTTTGGCCGC 60.080 57.895 0.00 0.00 38.44 6.53
3015 3126 1.079888 GCATTTGAGGGTTTGGCCG 60.080 57.895 0.00 0.00 38.44 6.13
3016 3127 0.247460 GAGCATTTGAGGGTTTGGCC 59.753 55.000 0.00 0.00 0.00 5.36
3017 3128 0.109132 CGAGCATTTGAGGGTTTGGC 60.109 55.000 0.00 0.00 0.00 4.52
3018 3129 1.470098 CTCGAGCATTTGAGGGTTTGG 59.530 52.381 0.00 0.00 32.06 3.28
3019 3130 1.135575 GCTCGAGCATTTGAGGGTTTG 60.136 52.381 31.91 0.00 41.59 2.93
3020 3131 1.168714 GCTCGAGCATTTGAGGGTTT 58.831 50.000 31.91 0.00 41.59 3.27
3021 3132 1.021390 CGCTCGAGCATTTGAGGGTT 61.021 55.000 34.69 0.00 40.92 4.11
3022 3133 1.448540 CGCTCGAGCATTTGAGGGT 60.449 57.895 34.69 0.00 40.92 4.34
3023 3134 0.740868 TTCGCTCGAGCATTTGAGGG 60.741 55.000 34.69 17.15 44.94 4.30
3024 3135 1.260033 GATTCGCTCGAGCATTTGAGG 59.740 52.381 34.69 17.87 42.21 3.86
3025 3136 1.260033 GGATTCGCTCGAGCATTTGAG 59.740 52.381 34.69 18.59 42.21 3.02
3026 3137 1.290203 GGATTCGCTCGAGCATTTGA 58.710 50.000 34.69 21.63 42.21 2.69
3027 3138 1.009078 TGGATTCGCTCGAGCATTTG 58.991 50.000 34.69 19.68 42.21 2.32
3028 3139 1.398390 GTTGGATTCGCTCGAGCATTT 59.602 47.619 34.69 19.21 42.21 2.32
3029 3140 1.009829 GTTGGATTCGCTCGAGCATT 58.990 50.000 34.69 19.58 42.21 3.56
3030 3141 0.811616 GGTTGGATTCGCTCGAGCAT 60.812 55.000 34.69 22.71 42.21 3.79
3031 3142 1.447838 GGTTGGATTCGCTCGAGCA 60.448 57.895 34.69 18.80 42.21 4.26
3032 3143 1.424493 CTGGTTGGATTCGCTCGAGC 61.424 60.000 27.64 27.64 37.78 5.03
3033 3144 0.108615 ACTGGTTGGATTCGCTCGAG 60.109 55.000 8.45 8.45 0.00 4.04
3034 3145 0.108804 GACTGGTTGGATTCGCTCGA 60.109 55.000 0.00 0.00 0.00 4.04
3035 3146 0.389817 TGACTGGTTGGATTCGCTCG 60.390 55.000 0.00 0.00 0.00 5.03
3036 3147 2.029838 ATGACTGGTTGGATTCGCTC 57.970 50.000 0.00 0.00 0.00 5.03
3037 3148 3.627395 TTATGACTGGTTGGATTCGCT 57.373 42.857 0.00 0.00 0.00 4.93
3038 3149 4.900635 AATTATGACTGGTTGGATTCGC 57.099 40.909 0.00 0.00 0.00 4.70
3039 3150 5.965334 CGAAAATTATGACTGGTTGGATTCG 59.035 40.000 0.00 0.00 0.00 3.34
3040 3151 7.083875 TCGAAAATTATGACTGGTTGGATTC 57.916 36.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.