Multiple sequence alignment - TraesCS6A01G307200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G307200 chr6A 100.000 4424 0 0 1 4424 541240758 541236335 0.000000e+00 8170.0
1 TraesCS6A01G307200 chr6D 96.249 1866 48 11 1 1859 394829194 394827344 0.000000e+00 3038.0
2 TraesCS6A01G307200 chr6D 93.885 1897 98 11 1941 3825 394827358 394825468 0.000000e+00 2844.0
3 TraesCS6A01G307200 chr6D 88.502 287 22 3 3944 4230 394825258 394824983 1.970000e-88 337.0
4 TraesCS6A01G307200 chr6B 93.226 1919 96 19 1941 3845 591126446 591124548 0.000000e+00 2793.0
5 TraesCS6A01G307200 chr6B 96.089 946 27 6 1 942 591128242 591127303 0.000000e+00 1533.0
6 TraesCS6A01G307200 chr6B 93.813 889 37 7 971 1859 591127302 591126432 0.000000e+00 1321.0
7 TraesCS6A01G307200 chr6B 85.563 284 27 6 3943 4224 591124361 591124090 7.240000e-73 285.0
8 TraesCS6A01G307200 chr6B 92.000 75 6 0 1861 1935 676126100 676126174 6.050000e-19 106.0
9 TraesCS6A01G307200 chr1D 97.561 82 2 0 1858 1939 369923752 369923671 1.660000e-29 141.0
10 TraesCS6A01G307200 chr7B 94.505 91 4 1 775 864 65299291 65299381 5.970000e-29 139.0
11 TraesCS6A01G307200 chr2A 98.182 55 1 0 1859 1913 608002987 608003041 3.640000e-16 97.1
12 TraesCS6A01G307200 chr3A 98.113 53 1 0 1861 1913 748836804 748836856 4.710000e-15 93.5
13 TraesCS6A01G307200 chr4A 86.747 83 9 2 1859 1940 545220111 545220030 1.690000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G307200 chr6A 541236335 541240758 4423 True 8170 8170 100.000000 1 4424 1 chr6A.!!$R1 4423
1 TraesCS6A01G307200 chr6D 394824983 394829194 4211 True 2073 3038 92.878667 1 4230 3 chr6D.!!$R1 4229
2 TraesCS6A01G307200 chr6B 591124090 591128242 4152 True 1483 2793 92.172750 1 4224 4 chr6B.!!$R1 4223

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 788 2.275318 GCAGTGCTTAGAGCTAGGTTG 58.725 52.381 8.18 0.00 42.97 3.77 F
1505 1520 0.532573 CACGAGTAGACAGCACCCAT 59.467 55.000 0.00 0.00 0.00 4.00 F
1885 1900 0.036875 AGGCTAACTGGCAGGTGTTC 59.963 55.000 17.03 3.97 44.55 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 1881 0.036875 GAACACCTGCCAGTTAGCCT 59.963 55.0 0.0 0.0 0.00 4.58 R
3048 3067 0.107312 GGTGCTCTGCATCTGATGGT 60.107 55.0 18.6 0.0 41.91 3.55 R
3746 3773 0.476771 ACTGGGGGAAAAAGAAGCGA 59.523 50.0 0.0 0.0 0.00 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
266 276 8.160765 TCTTGATGTCTTGGGAATTGTTACTTA 58.839 33.333 0.00 0.00 0.00 2.24
267 277 7.681939 TGATGTCTTGGGAATTGTTACTTAC 57.318 36.000 0.00 0.00 0.00 2.34
268 278 7.458397 TGATGTCTTGGGAATTGTTACTTACT 58.542 34.615 0.00 0.00 0.00 2.24
704 717 6.607600 TCCTTCTCTCTTTAAGTAGCTGCATA 59.392 38.462 4.12 0.00 0.00 3.14
732 746 4.043435 AGTTCCCTCATAGTTTTCCTGCTT 59.957 41.667 0.00 0.00 0.00 3.91
747 761 3.573538 TCCTGCTTGCTTTGCTTGATAAA 59.426 39.130 0.00 0.00 0.00 1.40
774 788 2.275318 GCAGTGCTTAGAGCTAGGTTG 58.725 52.381 8.18 0.00 42.97 3.77
996 1011 3.303924 CCGGTTTGTTTTACGGTGGTAAG 60.304 47.826 0.00 0.00 39.64 2.34
1347 1362 3.009473 ACATGCTCCATCTTGTTGGTACT 59.991 43.478 0.00 0.00 38.01 2.73
1349 1364 4.098914 TGCTCCATCTTGTTGGTACTTT 57.901 40.909 0.00 0.00 38.01 2.66
1353 1368 5.472137 GCTCCATCTTGTTGGTACTTTGTAA 59.528 40.000 0.00 0.00 38.01 2.41
1380 1395 8.335532 TGAGTACATATTTTCTTTTCCCACTG 57.664 34.615 0.00 0.00 0.00 3.66
1393 1408 4.781775 TTCCCACTGGTTTAACAAGAGA 57.218 40.909 6.48 0.00 0.00 3.10
1402 1417 6.884836 ACTGGTTTAACAAGAGAAAACTCTGT 59.115 34.615 6.48 0.00 34.34 3.41
1503 1518 1.215647 CCACGAGTAGACAGCACCC 59.784 63.158 0.00 0.00 0.00 4.61
1504 1519 1.532604 CCACGAGTAGACAGCACCCA 61.533 60.000 0.00 0.00 0.00 4.51
1505 1520 0.532573 CACGAGTAGACAGCACCCAT 59.467 55.000 0.00 0.00 0.00 4.00
1506 1521 1.749063 CACGAGTAGACAGCACCCATA 59.251 52.381 0.00 0.00 0.00 2.74
1546 1561 7.172532 GCCAAAGAAATTTTAGGGTTAAACCTG 59.827 37.037 22.95 1.24 42.02 4.00
1549 1564 5.783360 AGAAATTTTAGGGTTAAACCTGGGG 59.217 40.000 22.95 0.00 42.02 4.96
1554 1569 3.254093 AGGGTTAAACCTGGGGAAAAG 57.746 47.619 12.48 0.00 40.04 2.27
1583 1598 5.104277 ACCCGTGTAATTATCAGGATTGGAA 60.104 40.000 8.41 0.00 0.00 3.53
1639 1654 5.044919 ACCTTGACCCATATGATGTTGAGAA 60.045 40.000 3.65 0.00 0.00 2.87
1646 1661 5.450965 CCCATATGATGTTGAGAAACTTGGC 60.451 44.000 3.65 0.00 0.00 4.52
1648 1663 3.988379 TGATGTTGAGAAACTTGGCAC 57.012 42.857 0.00 0.00 0.00 5.01
1664 1679 4.025040 TGGCACATGATATCCCATCTTC 57.975 45.455 0.00 0.00 0.00 2.87
1690 1705 8.283992 CGAGTTTACATGATCCTACTACTGTAG 58.716 40.741 13.13 13.13 44.23 2.74
1786 1801 6.184789 TGGTTTCTCCATGGTTAATAAGTCC 58.815 40.000 12.58 6.20 41.93 3.85
1859 1874 3.099141 CACCAAACAGGGCATAGGATTT 58.901 45.455 0.00 0.00 43.89 2.17
1860 1875 3.515104 CACCAAACAGGGCATAGGATTTT 59.485 43.478 0.00 0.00 43.89 1.82
1861 1876 4.020307 CACCAAACAGGGCATAGGATTTTT 60.020 41.667 0.00 0.00 43.89 1.94
1881 1896 3.518992 TTTTTAGGCTAACTGGCAGGT 57.481 42.857 20.34 16.10 44.55 4.00
1882 1897 2.489938 TTTAGGCTAACTGGCAGGTG 57.510 50.000 17.03 6.46 44.55 4.00
1883 1898 1.358152 TTAGGCTAACTGGCAGGTGT 58.642 50.000 17.03 3.94 44.55 4.16
1884 1899 1.358152 TAGGCTAACTGGCAGGTGTT 58.642 50.000 17.03 5.51 44.55 3.32
1885 1900 0.036875 AGGCTAACTGGCAGGTGTTC 59.963 55.000 17.03 3.97 44.55 3.18
1886 1901 0.036875 GGCTAACTGGCAGGTGTTCT 59.963 55.000 17.03 0.00 41.37 3.01
1887 1902 1.160137 GCTAACTGGCAGGTGTTCTG 58.840 55.000 17.03 1.24 46.03 3.02
1899 1914 5.452078 CAGGTGTTCTGCCTTTTCATTAA 57.548 39.130 0.00 0.00 36.60 1.40
1900 1915 5.464168 CAGGTGTTCTGCCTTTTCATTAAG 58.536 41.667 0.00 0.00 36.60 1.85
1901 1916 5.241506 CAGGTGTTCTGCCTTTTCATTAAGA 59.758 40.000 0.00 0.00 36.60 2.10
1902 1917 6.012745 AGGTGTTCTGCCTTTTCATTAAGAT 58.987 36.000 0.00 0.00 31.04 2.40
1903 1918 6.494835 AGGTGTTCTGCCTTTTCATTAAGATT 59.505 34.615 0.00 0.00 31.04 2.40
1904 1919 7.669722 AGGTGTTCTGCCTTTTCATTAAGATTA 59.330 33.333 0.00 0.00 31.04 1.75
1905 1920 7.970614 GGTGTTCTGCCTTTTCATTAAGATTAG 59.029 37.037 0.00 0.00 0.00 1.73
1906 1921 7.970614 GTGTTCTGCCTTTTCATTAAGATTAGG 59.029 37.037 0.00 0.00 32.88 2.69
1907 1922 7.888021 TGTTCTGCCTTTTCATTAAGATTAGGA 59.112 33.333 0.00 0.00 31.93 2.94
1908 1923 8.401709 GTTCTGCCTTTTCATTAAGATTAGGAG 58.598 37.037 0.00 0.00 31.93 3.69
1909 1924 7.861629 TCTGCCTTTTCATTAAGATTAGGAGA 58.138 34.615 0.00 0.00 31.93 3.71
1910 1925 7.989741 TCTGCCTTTTCATTAAGATTAGGAGAG 59.010 37.037 0.00 0.00 31.93 3.20
1911 1926 7.861629 TGCCTTTTCATTAAGATTAGGAGAGA 58.138 34.615 0.00 0.00 31.93 3.10
1912 1927 8.328758 TGCCTTTTCATTAAGATTAGGAGAGAA 58.671 33.333 0.00 0.00 31.93 2.87
1913 1928 9.178758 GCCTTTTCATTAAGATTAGGAGAGAAA 57.821 33.333 0.00 0.00 31.93 2.52
1917 1932 9.672673 TTTCATTAAGATTAGGAGAGAAACAGG 57.327 33.333 0.00 0.00 0.00 4.00
1918 1933 7.796054 TCATTAAGATTAGGAGAGAAACAGGG 58.204 38.462 0.00 0.00 0.00 4.45
1919 1934 7.403231 TCATTAAGATTAGGAGAGAAACAGGGT 59.597 37.037 0.00 0.00 0.00 4.34
1920 1935 8.705594 CATTAAGATTAGGAGAGAAACAGGGTA 58.294 37.037 0.00 0.00 0.00 3.69
1921 1936 8.855804 TTAAGATTAGGAGAGAAACAGGGTAT 57.144 34.615 0.00 0.00 0.00 2.73
1922 1937 7.757242 AAGATTAGGAGAGAAACAGGGTATT 57.243 36.000 0.00 0.00 0.00 1.89
1923 1938 8.855804 AAGATTAGGAGAGAAACAGGGTATTA 57.144 34.615 0.00 0.00 0.00 0.98
1924 1939 8.252624 AGATTAGGAGAGAAACAGGGTATTAC 57.747 38.462 0.00 0.00 0.00 1.89
1925 1940 7.844779 AGATTAGGAGAGAAACAGGGTATTACA 59.155 37.037 0.00 0.00 0.00 2.41
1926 1941 7.801893 TTAGGAGAGAAACAGGGTATTACAA 57.198 36.000 0.00 0.00 0.00 2.41
1927 1942 6.301169 AGGAGAGAAACAGGGTATTACAAG 57.699 41.667 0.00 0.00 0.00 3.16
1928 1943 6.023603 AGGAGAGAAACAGGGTATTACAAGA 58.976 40.000 0.00 0.00 0.00 3.02
1929 1944 6.155393 AGGAGAGAAACAGGGTATTACAAGAG 59.845 42.308 0.00 0.00 0.00 2.85
1930 1945 6.301169 AGAGAAACAGGGTATTACAAGAGG 57.699 41.667 0.00 0.00 0.00 3.69
1931 1946 6.023603 AGAGAAACAGGGTATTACAAGAGGA 58.976 40.000 0.00 0.00 0.00 3.71
1932 1947 6.155393 AGAGAAACAGGGTATTACAAGAGGAG 59.845 42.308 0.00 0.00 0.00 3.69
1933 1948 4.489306 AACAGGGTATTACAAGAGGAGC 57.511 45.455 0.00 0.00 0.00 4.70
1934 1949 3.450904 ACAGGGTATTACAAGAGGAGCA 58.549 45.455 0.00 0.00 0.00 4.26
1935 1950 3.452627 ACAGGGTATTACAAGAGGAGCAG 59.547 47.826 0.00 0.00 0.00 4.24
1936 1951 3.041946 AGGGTATTACAAGAGGAGCAGG 58.958 50.000 0.00 0.00 0.00 4.85
1937 1952 2.104963 GGGTATTACAAGAGGAGCAGGG 59.895 54.545 0.00 0.00 0.00 4.45
1938 1953 2.104963 GGTATTACAAGAGGAGCAGGGG 59.895 54.545 0.00 0.00 0.00 4.79
1939 1954 1.216990 ATTACAAGAGGAGCAGGGGG 58.783 55.000 0.00 0.00 0.00 5.40
1940 1955 0.118346 TTACAAGAGGAGCAGGGGGA 59.882 55.000 0.00 0.00 0.00 4.81
1941 1956 0.617820 TACAAGAGGAGCAGGGGGAC 60.618 60.000 0.00 0.00 0.00 4.46
1942 1957 1.920325 CAAGAGGAGCAGGGGGACA 60.920 63.158 0.00 0.00 0.00 4.02
1943 1958 1.614824 AAGAGGAGCAGGGGGACAG 60.615 63.158 0.00 0.00 0.00 3.51
1944 1959 3.086600 GAGGAGCAGGGGGACAGG 61.087 72.222 0.00 0.00 0.00 4.00
1945 1960 4.748798 AGGAGCAGGGGGACAGGG 62.749 72.222 0.00 0.00 0.00 4.45
1949 1964 3.096495 GCAGGGGGACAGGGCATA 61.096 66.667 0.00 0.00 0.00 3.14
1950 1965 3.125376 GCAGGGGGACAGGGCATAG 62.125 68.421 0.00 0.00 0.00 2.23
1951 1966 2.039405 AGGGGGACAGGGCATAGG 60.039 66.667 0.00 0.00 0.00 2.57
1952 1967 2.039831 GGGGGACAGGGCATAGGA 60.040 66.667 0.00 0.00 0.00 2.94
1953 1968 1.464198 GGGGGACAGGGCATAGGAT 60.464 63.158 0.00 0.00 0.00 3.24
1954 1969 1.068352 GGGGGACAGGGCATAGGATT 61.068 60.000 0.00 0.00 0.00 3.01
2038 2053 3.497262 GCTCACGCTTACTTACCAAAACT 59.503 43.478 0.00 0.00 0.00 2.66
2042 2057 7.551035 TCACGCTTACTTACCAAAACTTTTA 57.449 32.000 0.00 0.00 0.00 1.52
2043 2058 8.156994 TCACGCTTACTTACCAAAACTTTTAT 57.843 30.769 0.00 0.00 0.00 1.40
2254 2269 3.575256 TCGTCTTTTACAAGGGTAGAGCA 59.425 43.478 0.00 0.00 0.00 4.26
2299 2314 1.089112 TGATGCATGAGTTTCGGCTG 58.911 50.000 2.46 0.00 0.00 4.85
2320 2335 0.608130 CATCACTCACCGACCCTTCA 59.392 55.000 0.00 0.00 0.00 3.02
2373 2388 4.846779 TTCCACCAAATGTAAGCAACTC 57.153 40.909 0.00 0.00 0.00 3.01
2442 2457 6.389830 ACATGTGAACTTGAATGCAACTTA 57.610 33.333 0.00 0.00 0.00 2.24
2460 2475 4.312487 ACTTATGTAGGATGCCCCCTAAA 58.688 43.478 3.11 0.00 40.24 1.85
2483 2500 3.433274 TCTTGAAGAACATTGCTGCTACG 59.567 43.478 0.00 0.00 0.00 3.51
2501 2518 7.749126 GCTGCTACGTTAAAAATACATGTCTTT 59.251 33.333 0.00 1.74 0.00 2.52
2559 2576 7.316544 TCTTTCGGAAAAATATAAGGACTGC 57.683 36.000 4.53 0.00 0.00 4.40
2711 2729 6.142817 CCTTTCACAAGAAAATCACTAACCG 58.857 40.000 0.00 0.00 42.78 4.44
2715 2733 5.995282 TCACAAGAAAATCACTAACCGACAT 59.005 36.000 0.00 0.00 0.00 3.06
2716 2734 7.156000 TCACAAGAAAATCACTAACCGACATA 58.844 34.615 0.00 0.00 0.00 2.29
2726 2745 7.605410 TCACTAACCGACATATTTTCTTTCC 57.395 36.000 0.00 0.00 0.00 3.13
2733 2752 8.122472 ACCGACATATTTTCTTTCCATTTTCT 57.878 30.769 0.00 0.00 0.00 2.52
2751 2770 1.685517 TCTCCTCATGAGCAGGATTCG 59.314 52.381 17.76 1.09 39.44 3.34
2784 2803 5.115480 TGCAGGATTTTCAAGAAAACCAAC 58.885 37.500 19.43 14.27 42.32 3.77
2829 2848 0.712979 ACTCATGGGTCTCTCCTCCA 59.287 55.000 0.00 0.00 36.25 3.86
2837 2856 2.478292 GGTCTCTCCTCCATTACCCAA 58.522 52.381 0.00 0.00 0.00 4.12
2856 2875 3.360867 CAACACAAATGGGGCCTACATA 58.639 45.455 12.76 0.00 0.00 2.29
2910 2929 2.288457 ACACACCTCAGAGAACACATCG 60.288 50.000 0.00 0.00 0.00 3.84
2913 2932 1.546476 ACCTCAGAGAACACATCGTCC 59.454 52.381 0.00 0.00 0.00 4.79
2973 2992 2.763249 GCAGTGGCTATTTTCCATCG 57.237 50.000 0.00 0.00 35.81 3.84
3018 3037 5.583457 CACTCTCAACATCATTGACAGCATA 59.417 40.000 0.00 0.00 0.00 3.14
3048 3067 3.643320 CAGCTACATCCATAGTTCTCCCA 59.357 47.826 0.00 0.00 0.00 4.37
3084 3103 1.135094 ACCAGGCCATGAGTATCCTG 58.865 55.000 5.01 2.84 44.25 3.86
3087 3106 1.043816 AGGCCATGAGTATCCTGTCG 58.956 55.000 5.01 0.00 0.00 4.35
3093 3112 3.470709 CATGAGTATCCTGTCGGCAATT 58.529 45.455 0.00 0.00 0.00 2.32
3157 3176 1.003839 AACGCGTCACCCATCACAT 60.004 52.632 14.44 0.00 0.00 3.21
3253 3275 3.188786 GCAGATGCGTGGTCGACC 61.189 66.667 28.17 28.17 39.71 4.79
3451 3473 7.836842 TGTACTCTGTAGCAATGTAGATTTGA 58.163 34.615 0.00 0.00 0.00 2.69
3462 3484 8.186821 AGCAATGTAGATTTGATTTTAGAGTGC 58.813 33.333 0.00 0.00 32.69 4.40
3472 3494 5.655488 TGATTTTAGAGTGCAGTAGAGAGC 58.345 41.667 0.00 0.00 0.00 4.09
3475 3497 2.214376 AGAGTGCAGTAGAGAGCAGT 57.786 50.000 0.00 0.00 46.37 4.40
3501 3523 6.183361 ACCTACCTCCATCTGCTAGTATTACT 60.183 42.308 1.30 1.30 0.00 2.24
3508 3530 6.549736 TCCATCTGCTAGTATTACTGTTAGCA 59.450 38.462 15.54 15.54 44.36 3.49
3511 3533 7.582667 TCTGCTAGTATTACTGTTAGCATGA 57.417 36.000 16.35 13.46 45.13 3.07
3530 3552 6.043411 GCATGAAGAGGTATTAGAGTTTCGT 58.957 40.000 0.00 0.00 0.00 3.85
3558 3580 7.494211 TGTTAACAGTGAAGCTAACAGAACTA 58.506 34.615 3.59 0.00 32.11 2.24
3570 3592 5.637810 GCTAACAGAACTAATGTGTGCTACA 59.362 40.000 0.00 0.00 44.87 2.74
3574 3596 5.997746 ACAGAACTAATGTGTGCTACAATGT 59.002 36.000 0.00 0.00 43.77 2.71
3575 3597 7.158697 ACAGAACTAATGTGTGCTACAATGTA 58.841 34.615 0.00 0.00 43.77 2.29
3576 3598 7.659799 ACAGAACTAATGTGTGCTACAATGTAA 59.340 33.333 0.00 0.00 43.77 2.41
3644 3666 0.794473 GTTGTAGGTTGTAGCCGTGC 59.206 55.000 0.00 0.00 0.00 5.34
3646 3668 1.449070 GTAGGTTGTAGCCGTGCCC 60.449 63.158 0.00 0.00 0.00 5.36
3709 3736 6.127810 CATGTACTGCAGAATTGTGCTATT 57.872 37.500 25.85 13.56 44.32 1.73
3711 3738 7.696755 CATGTACTGCAGAATTGTGCTATTTA 58.303 34.615 25.85 11.77 44.32 1.40
3714 3741 6.140303 ACTGCAGAATTGTGCTATTTATGG 57.860 37.500 25.85 9.80 44.32 2.74
3723 3750 9.807649 GAATTGTGCTATTTATGGTTTCTGAAT 57.192 29.630 0.00 0.00 0.00 2.57
3746 3773 4.160439 TGAACTGCCTAATCTGATCGTCTT 59.840 41.667 0.00 0.00 0.00 3.01
3748 3775 3.243234 ACTGCCTAATCTGATCGTCTTCG 60.243 47.826 0.00 0.00 38.55 3.79
3758 3785 4.386049 TCTGATCGTCTTCGCTTCTTTTTC 59.614 41.667 0.00 0.00 36.96 2.29
3773 3801 4.814967 TCTTTTTCCCCCAGTTTTGAGAT 58.185 39.130 0.00 0.00 0.00 2.75
3803 3831 0.179078 TTGTCGGTGCACGTACCTTT 60.179 50.000 11.45 0.00 44.69 3.11
3810 3838 2.613133 GGTGCACGTACCTTTGTGTAAA 59.387 45.455 11.45 0.00 38.36 2.01
3825 3853 8.786826 CTTTGTGTAAAAGGATCACTGGTATA 57.213 34.615 0.00 0.00 33.82 1.47
3826 3854 8.786826 TTTGTGTAAAAGGATCACTGGTATAG 57.213 34.615 0.00 0.00 33.82 1.31
3837 3871 5.086104 TCACTGGTATAGGAAGAAACAGC 57.914 43.478 0.00 0.00 0.00 4.40
3839 3873 5.105310 TCACTGGTATAGGAAGAAACAGCTC 60.105 44.000 0.00 0.00 0.00 4.09
3853 3910 1.139947 AGCTCGCTTAGTCCGCTTC 59.860 57.895 0.00 0.00 0.00 3.86
3874 3931 0.249322 CTGACAACAAGGTCGTCCGT 60.249 55.000 0.00 0.00 40.72 4.69
3904 3961 1.903183 AGTAGGACTTGGCTCTGAACC 59.097 52.381 0.00 0.00 0.00 3.62
3913 3970 4.735132 CTCTGAACCGGCGGCGAA 62.735 66.667 34.49 14.00 0.00 4.70
3922 3979 4.557605 GGCGGCGAATCGTACGGA 62.558 66.667 16.52 2.44 32.36 4.69
3928 3990 0.864797 GCGAATCGTACGGACTGGTC 60.865 60.000 16.52 3.42 0.00 4.02
3979 4106 4.087892 CCAGGCAGTCTCGGTGGG 62.088 72.222 0.00 0.00 0.00 4.61
4025 4152 4.974721 CCCCAGGCACGGCTTTGT 62.975 66.667 0.00 0.00 0.00 2.83
4037 4164 2.571548 GCTTTGTGGCCTGCTATGT 58.428 52.632 3.32 0.00 0.00 2.29
4038 4165 1.750193 GCTTTGTGGCCTGCTATGTA 58.250 50.000 3.32 0.00 0.00 2.29
4039 4166 1.401905 GCTTTGTGGCCTGCTATGTAC 59.598 52.381 3.32 0.00 0.00 2.90
4040 4167 2.941415 GCTTTGTGGCCTGCTATGTACT 60.941 50.000 3.32 0.00 0.00 2.73
4058 4185 0.652592 CTTATGCAGGGAAGTTCGCG 59.347 55.000 13.65 0.00 34.19 5.87
4091 4218 0.250467 ACCTGTCACTTGCTCGCATT 60.250 50.000 0.00 0.00 0.00 3.56
4166 4294 1.938577 CAGATGATGGAAGAGCGGTTG 59.061 52.381 0.00 0.00 0.00 3.77
4167 4295 0.659957 GATGATGGAAGAGCGGTTGC 59.340 55.000 0.00 0.00 43.24 4.17
4168 4296 0.749454 ATGATGGAAGAGCGGTTGCC 60.749 55.000 0.00 0.00 44.31 4.52
4190 4318 4.232878 CCGGCCCTGCTGCTAGAG 62.233 72.222 0.00 0.00 32.89 2.43
4199 4327 2.105930 CTGCTAGAGGCTGCGGAC 59.894 66.667 0.00 0.00 42.39 4.79
4201 4329 2.025767 CTGCTAGAGGCTGCGGACAT 62.026 60.000 0.00 0.00 42.39 3.06
4220 4348 5.795441 GGACATTTTGACGTTTCAGATTAGC 59.205 40.000 0.00 0.00 31.71 3.09
4224 4352 3.394674 TGACGTTTCAGATTAGCACCA 57.605 42.857 0.00 0.00 0.00 4.17
4230 4358 1.221840 CAGATTAGCACCAGGCCGT 59.778 57.895 0.00 0.00 46.50 5.68
4231 4359 0.392998 CAGATTAGCACCAGGCCGTT 60.393 55.000 0.00 0.00 46.50 4.44
4232 4360 0.107654 AGATTAGCACCAGGCCGTTC 60.108 55.000 0.00 0.00 46.50 3.95
4233 4361 0.107654 GATTAGCACCAGGCCGTTCT 60.108 55.000 0.00 0.00 46.50 3.01
4234 4362 0.107654 ATTAGCACCAGGCCGTTCTC 60.108 55.000 0.00 0.00 46.50 2.87
4235 4363 1.476845 TTAGCACCAGGCCGTTCTCA 61.477 55.000 0.00 0.00 46.50 3.27
4236 4364 1.476845 TAGCACCAGGCCGTTCTCAA 61.477 55.000 0.00 0.00 46.50 3.02
4237 4365 1.896660 GCACCAGGCCGTTCTCAAA 60.897 57.895 0.00 0.00 36.11 2.69
4238 4366 1.452145 GCACCAGGCCGTTCTCAAAA 61.452 55.000 0.00 0.00 36.11 2.44
4239 4367 1.028905 CACCAGGCCGTTCTCAAAAA 58.971 50.000 0.00 0.00 0.00 1.94
4240 4368 1.029681 ACCAGGCCGTTCTCAAAAAC 58.970 50.000 0.00 0.00 0.00 2.43
4241 4369 1.028905 CCAGGCCGTTCTCAAAAACA 58.971 50.000 0.00 0.00 0.00 2.83
4242 4370 1.407258 CCAGGCCGTTCTCAAAAACAA 59.593 47.619 0.00 0.00 0.00 2.83
4243 4371 2.159170 CCAGGCCGTTCTCAAAAACAAA 60.159 45.455 0.00 0.00 0.00 2.83
4244 4372 3.516615 CAGGCCGTTCTCAAAAACAAAA 58.483 40.909 0.00 0.00 0.00 2.44
4245 4373 3.551485 CAGGCCGTTCTCAAAAACAAAAG 59.449 43.478 0.00 0.00 0.00 2.27
4246 4374 2.863740 GGCCGTTCTCAAAAACAAAAGG 59.136 45.455 0.00 0.00 0.00 3.11
4247 4375 3.429684 GGCCGTTCTCAAAAACAAAAGGA 60.430 43.478 0.00 0.00 0.00 3.36
4248 4376 4.368315 GCCGTTCTCAAAAACAAAAGGAT 58.632 39.130 0.00 0.00 0.00 3.24
4249 4377 4.808895 GCCGTTCTCAAAAACAAAAGGATT 59.191 37.500 0.00 0.00 0.00 3.01
4250 4378 5.980715 GCCGTTCTCAAAAACAAAAGGATTA 59.019 36.000 0.00 0.00 0.00 1.75
4251 4379 6.143919 GCCGTTCTCAAAAACAAAAGGATTAG 59.856 38.462 0.00 0.00 0.00 1.73
4252 4380 6.143919 CCGTTCTCAAAAACAAAAGGATTAGC 59.856 38.462 0.00 0.00 0.00 3.09
4253 4381 6.695278 CGTTCTCAAAAACAAAAGGATTAGCA 59.305 34.615 0.00 0.00 0.00 3.49
4254 4382 7.305993 CGTTCTCAAAAACAAAAGGATTAGCAC 60.306 37.037 0.00 0.00 0.00 4.40
4255 4383 6.512297 TCTCAAAAACAAAAGGATTAGCACC 58.488 36.000 0.00 0.00 0.00 5.01
4256 4384 6.097554 TCTCAAAAACAAAAGGATTAGCACCA 59.902 34.615 0.00 0.00 0.00 4.17
4257 4385 6.279882 TCAAAAACAAAAGGATTAGCACCAG 58.720 36.000 0.00 0.00 0.00 4.00
4258 4386 4.871933 AAACAAAAGGATTAGCACCAGG 57.128 40.909 0.00 0.00 0.00 4.45
4259 4387 2.171003 ACAAAAGGATTAGCACCAGGC 58.829 47.619 0.00 0.00 45.30 4.85
4260 4388 1.478105 CAAAAGGATTAGCACCAGGCC 59.522 52.381 0.00 0.00 46.50 5.19
4261 4389 0.394352 AAAGGATTAGCACCAGGCCG 60.394 55.000 0.00 0.00 46.50 6.13
4262 4390 2.893682 AAGGATTAGCACCAGGCCGC 62.894 60.000 0.00 0.00 46.50 6.53
4263 4391 2.902343 GATTAGCACCAGGCCGCC 60.902 66.667 0.00 0.00 46.50 6.13
4264 4392 3.697439 GATTAGCACCAGGCCGCCA 62.697 63.158 13.15 0.00 46.50 5.69
4265 4393 3.704231 ATTAGCACCAGGCCGCCAG 62.704 63.158 13.15 2.88 46.50 4.85
4269 4397 4.431131 CACCAGGCCGCCAGGAAT 62.431 66.667 26.71 2.81 41.02 3.01
4270 4398 3.661648 ACCAGGCCGCCAGGAATT 61.662 61.111 26.71 2.03 41.02 2.17
4271 4399 2.362889 CCAGGCCGCCAGGAATTT 60.363 61.111 15.81 0.00 41.02 1.82
4272 4400 1.077068 CCAGGCCGCCAGGAATTTA 60.077 57.895 15.81 0.00 41.02 1.40
4273 4401 1.384222 CCAGGCCGCCAGGAATTTAC 61.384 60.000 15.81 0.00 41.02 2.01
4274 4402 1.451387 AGGCCGCCAGGAATTTACG 60.451 57.895 13.15 0.00 41.02 3.18
4275 4403 2.478033 GGCCGCCAGGAATTTACGG 61.478 63.158 3.91 0.00 46.50 4.02
4276 4404 3.107447 CCGCCAGGAATTTACGGC 58.893 61.111 0.00 4.88 41.02 5.68
4277 4405 1.451387 CCGCCAGGAATTTACGGCT 60.451 57.895 11.12 0.00 42.59 5.52
4278 4406 1.029947 CCGCCAGGAATTTACGGCTT 61.030 55.000 11.12 0.00 42.59 4.35
4279 4407 1.658994 CGCCAGGAATTTACGGCTTA 58.341 50.000 11.12 0.00 42.59 3.09
4280 4408 1.329599 CGCCAGGAATTTACGGCTTAC 59.670 52.381 11.12 0.00 42.59 2.34
4281 4409 2.640184 GCCAGGAATTTACGGCTTACT 58.360 47.619 7.09 0.00 41.50 2.24
4282 4410 3.014623 GCCAGGAATTTACGGCTTACTT 58.985 45.455 7.09 0.00 41.50 2.24
4283 4411 3.442625 GCCAGGAATTTACGGCTTACTTT 59.557 43.478 7.09 0.00 41.50 2.66
4284 4412 4.674362 GCCAGGAATTTACGGCTTACTTTG 60.674 45.833 7.09 0.00 41.50 2.77
4285 4413 4.142469 CCAGGAATTTACGGCTTACTTTGG 60.142 45.833 0.00 0.00 0.00 3.28
4286 4414 4.457949 CAGGAATTTACGGCTTACTTTGGT 59.542 41.667 0.00 0.00 0.00 3.67
4287 4415 5.048294 CAGGAATTTACGGCTTACTTTGGTT 60.048 40.000 0.00 0.00 0.00 3.67
4288 4416 5.182570 AGGAATTTACGGCTTACTTTGGTTC 59.817 40.000 0.00 0.00 0.00 3.62
4289 4417 5.048573 GGAATTTACGGCTTACTTTGGTTCA 60.049 40.000 0.00 0.00 0.00 3.18
4290 4418 5.622770 ATTTACGGCTTACTTTGGTTCAG 57.377 39.130 0.00 0.00 0.00 3.02
4291 4419 2.922740 ACGGCTTACTTTGGTTCAGA 57.077 45.000 0.00 0.00 0.00 3.27
4292 4420 3.418684 ACGGCTTACTTTGGTTCAGAT 57.581 42.857 0.00 0.00 0.00 2.90
4293 4421 4.546829 ACGGCTTACTTTGGTTCAGATA 57.453 40.909 0.00 0.00 0.00 1.98
4294 4422 4.901868 ACGGCTTACTTTGGTTCAGATAA 58.098 39.130 0.00 0.00 0.00 1.75
4295 4423 5.497474 ACGGCTTACTTTGGTTCAGATAAT 58.503 37.500 0.00 0.00 0.00 1.28
4296 4424 5.354234 ACGGCTTACTTTGGTTCAGATAATG 59.646 40.000 0.00 0.00 0.00 1.90
4297 4425 5.220854 CGGCTTACTTTGGTTCAGATAATGG 60.221 44.000 0.00 0.00 0.00 3.16
4298 4426 5.652452 GGCTTACTTTGGTTCAGATAATGGT 59.348 40.000 0.00 0.00 0.00 3.55
4299 4427 6.183360 GGCTTACTTTGGTTCAGATAATGGTC 60.183 42.308 0.00 0.00 0.00 4.02
4300 4428 6.183360 GCTTACTTTGGTTCAGATAATGGTCC 60.183 42.308 0.00 0.00 0.00 4.46
4301 4429 4.261801 ACTTTGGTTCAGATAATGGTCCG 58.738 43.478 0.00 0.00 0.00 4.79
4302 4430 4.019681 ACTTTGGTTCAGATAATGGTCCGA 60.020 41.667 0.00 0.00 0.00 4.55
4303 4431 4.561500 TTGGTTCAGATAATGGTCCGAA 57.438 40.909 0.00 0.00 0.00 4.30
4304 4432 4.137116 TGGTTCAGATAATGGTCCGAAG 57.863 45.455 0.00 0.00 0.00 3.79
4305 4433 3.517901 TGGTTCAGATAATGGTCCGAAGT 59.482 43.478 0.00 0.00 0.00 3.01
4306 4434 4.120589 GGTTCAGATAATGGTCCGAAGTC 58.879 47.826 0.00 0.00 0.00 3.01
4307 4435 4.141914 GGTTCAGATAATGGTCCGAAGTCT 60.142 45.833 0.00 0.00 0.00 3.24
4308 4436 5.068723 GGTTCAGATAATGGTCCGAAGTCTA 59.931 44.000 0.00 0.00 0.00 2.59
4309 4437 5.769484 TCAGATAATGGTCCGAAGTCTAC 57.231 43.478 0.00 0.00 0.00 2.59
4310 4438 5.446860 TCAGATAATGGTCCGAAGTCTACT 58.553 41.667 0.00 0.00 0.00 2.57
4311 4439 6.598503 TCAGATAATGGTCCGAAGTCTACTA 58.401 40.000 0.00 0.00 0.00 1.82
4312 4440 6.485984 TCAGATAATGGTCCGAAGTCTACTAC 59.514 42.308 0.00 0.00 0.00 2.73
4313 4441 6.262496 CAGATAATGGTCCGAAGTCTACTACA 59.738 42.308 0.00 0.00 0.00 2.74
4314 4442 4.985538 AATGGTCCGAAGTCTACTACAG 57.014 45.455 0.00 0.00 0.00 2.74
4315 4443 2.719739 TGGTCCGAAGTCTACTACAGG 58.280 52.381 0.00 0.00 0.00 4.00
4316 4444 1.404748 GGTCCGAAGTCTACTACAGGC 59.595 57.143 0.00 0.00 0.00 4.85
4317 4445 1.404748 GTCCGAAGTCTACTACAGGCC 59.595 57.143 0.00 0.00 0.00 5.19
4318 4446 0.381089 CCGAAGTCTACTACAGGCCG 59.619 60.000 0.00 0.00 0.00 6.13
4319 4447 0.381089 CGAAGTCTACTACAGGCCGG 59.619 60.000 0.00 0.00 0.00 6.13
4320 4448 0.102663 GAAGTCTACTACAGGCCGGC 59.897 60.000 21.18 21.18 0.00 6.13
4321 4449 0.324460 AAGTCTACTACAGGCCGGCT 60.324 55.000 28.56 9.55 0.00 5.52
4322 4450 0.324460 AGTCTACTACAGGCCGGCTT 60.324 55.000 28.56 18.19 0.00 4.35
4323 4451 0.535797 GTCTACTACAGGCCGGCTTT 59.464 55.000 28.56 12.72 0.00 3.51
4324 4452 1.753073 GTCTACTACAGGCCGGCTTTA 59.247 52.381 28.56 13.79 0.00 1.85
4325 4453 2.029623 TCTACTACAGGCCGGCTTTAG 58.970 52.381 28.56 23.79 0.00 1.85
4326 4454 2.029623 CTACTACAGGCCGGCTTTAGA 58.970 52.381 28.56 4.91 0.00 2.10
4327 4455 0.535797 ACTACAGGCCGGCTTTAGAC 59.464 55.000 28.56 8.41 0.00 2.59
4328 4456 0.179081 CTACAGGCCGGCTTTAGACC 60.179 60.000 28.56 7.55 0.00 3.85
4329 4457 1.619807 TACAGGCCGGCTTTAGACCC 61.620 60.000 28.56 6.68 0.00 4.46
4330 4458 2.609610 AGGCCGGCTTTAGACCCA 60.610 61.111 28.56 0.00 0.00 4.51
4331 4459 2.001269 AGGCCGGCTTTAGACCCAT 61.001 57.895 28.56 0.00 0.00 4.00
4332 4460 1.823899 GGCCGGCTTTAGACCCATG 60.824 63.158 28.56 0.00 0.00 3.66
4333 4461 2.481471 GCCGGCTTTAGACCCATGC 61.481 63.158 22.15 0.00 0.00 4.06
4334 4462 2.180204 CCGGCTTTAGACCCATGCG 61.180 63.158 0.00 0.00 0.00 4.73
4335 4463 1.153449 CGGCTTTAGACCCATGCGA 60.153 57.895 0.00 0.00 0.00 5.10
4336 4464 1.154205 CGGCTTTAGACCCATGCGAG 61.154 60.000 0.00 0.00 0.00 5.03
4337 4465 0.178068 GGCTTTAGACCCATGCGAGA 59.822 55.000 0.00 0.00 0.00 4.04
4338 4466 1.406887 GGCTTTAGACCCATGCGAGAA 60.407 52.381 0.00 0.00 0.00 2.87
4339 4467 2.565841 GCTTTAGACCCATGCGAGAAT 58.434 47.619 0.00 0.00 0.00 2.40
4340 4468 2.289002 GCTTTAGACCCATGCGAGAATG 59.711 50.000 0.00 0.00 0.00 2.67
4341 4469 3.797039 CTTTAGACCCATGCGAGAATGA 58.203 45.455 0.00 0.00 0.00 2.57
4342 4470 4.384056 CTTTAGACCCATGCGAGAATGAT 58.616 43.478 0.00 0.00 0.00 2.45
4343 4471 2.540265 AGACCCATGCGAGAATGATC 57.460 50.000 0.00 0.00 0.00 2.92
4344 4472 1.143305 GACCCATGCGAGAATGATCG 58.857 55.000 0.00 0.00 45.48 3.69
4345 4473 0.752658 ACCCATGCGAGAATGATCGA 59.247 50.000 4.13 0.00 45.56 3.59
4346 4474 1.143305 CCCATGCGAGAATGATCGAC 58.857 55.000 4.13 0.00 45.56 4.20
4347 4475 1.143305 CCATGCGAGAATGATCGACC 58.857 55.000 4.13 0.00 45.56 4.79
4348 4476 1.269988 CCATGCGAGAATGATCGACCT 60.270 52.381 4.13 0.00 45.56 3.85
4349 4477 1.791204 CATGCGAGAATGATCGACCTG 59.209 52.381 4.13 0.00 45.56 4.00
4350 4478 0.103026 TGCGAGAATGATCGACCTGG 59.897 55.000 4.13 0.00 45.56 4.45
4351 4479 0.103208 GCGAGAATGATCGACCTGGT 59.897 55.000 0.00 0.00 45.56 4.00
4352 4480 1.866063 GCGAGAATGATCGACCTGGTC 60.866 57.143 16.99 16.99 45.56 4.02
4353 4481 1.405463 CGAGAATGATCGACCTGGTCA 59.595 52.381 25.42 13.48 45.56 4.02
4354 4482 2.796383 CGAGAATGATCGACCTGGTCAC 60.796 54.545 25.42 15.97 45.56 3.67
4355 4483 1.135139 AGAATGATCGACCTGGTCACG 59.865 52.381 25.42 14.04 32.09 4.35
4356 4484 1.134367 GAATGATCGACCTGGTCACGA 59.866 52.381 25.42 18.76 40.18 4.35
4357 4485 1.182667 ATGATCGACCTGGTCACGAA 58.817 50.000 25.42 9.36 39.38 3.85
4358 4486 1.182667 TGATCGACCTGGTCACGAAT 58.817 50.000 25.42 12.98 39.38 3.34
4359 4487 1.134367 TGATCGACCTGGTCACGAATC 59.866 52.381 25.42 19.77 39.38 2.52
4360 4488 1.405821 GATCGACCTGGTCACGAATCT 59.594 52.381 25.42 5.08 39.38 2.40
4361 4489 0.526211 TCGACCTGGTCACGAATCTG 59.474 55.000 25.42 7.60 33.20 2.90
4362 4490 1.078759 CGACCTGGTCACGAATCTGC 61.079 60.000 25.42 0.00 32.09 4.26
4363 4491 0.037326 GACCTGGTCACGAATCTGCA 60.037 55.000 21.70 0.00 32.09 4.41
4364 4492 0.396435 ACCTGGTCACGAATCTGCAA 59.604 50.000 0.00 0.00 0.00 4.08
4365 4493 1.003580 ACCTGGTCACGAATCTGCAAT 59.996 47.619 0.00 0.00 0.00 3.56
4366 4494 1.399440 CCTGGTCACGAATCTGCAATG 59.601 52.381 0.00 0.00 0.00 2.82
4367 4495 0.804364 TGGTCACGAATCTGCAATGC 59.196 50.000 0.00 0.00 0.00 3.56
4368 4496 1.089920 GGTCACGAATCTGCAATGCT 58.910 50.000 6.82 0.00 0.00 3.79
4369 4497 2.279741 GGTCACGAATCTGCAATGCTA 58.720 47.619 6.82 0.00 0.00 3.49
4370 4498 2.677836 GGTCACGAATCTGCAATGCTAA 59.322 45.455 6.82 0.00 0.00 3.09
4371 4499 3.126858 GGTCACGAATCTGCAATGCTAAA 59.873 43.478 6.82 0.00 0.00 1.85
4372 4500 4.379394 GGTCACGAATCTGCAATGCTAAAA 60.379 41.667 6.82 0.00 0.00 1.52
4373 4501 5.153513 GTCACGAATCTGCAATGCTAAAAA 58.846 37.500 6.82 0.00 0.00 1.94
4393 4521 4.853924 AAAATCACGAATCTGCCAAAGT 57.146 36.364 0.00 0.00 0.00 2.66
4394 4522 3.837213 AATCACGAATCTGCCAAAGTG 57.163 42.857 0.00 0.00 0.00 3.16
4395 4523 0.874390 TCACGAATCTGCCAAAGTGC 59.126 50.000 0.00 0.00 0.00 4.40
4396 4524 0.877071 CACGAATCTGCCAAAGTGCT 59.123 50.000 0.00 0.00 0.00 4.40
4397 4525 2.076100 CACGAATCTGCCAAAGTGCTA 58.924 47.619 0.00 0.00 0.00 3.49
4398 4526 2.094894 CACGAATCTGCCAAAGTGCTAG 59.905 50.000 0.00 0.00 0.00 3.42
4399 4527 1.063174 CGAATCTGCCAAAGTGCTAGC 59.937 52.381 8.10 8.10 0.00 3.42
4400 4528 1.403323 GAATCTGCCAAAGTGCTAGCC 59.597 52.381 13.29 3.49 0.00 3.93
4401 4529 0.394899 ATCTGCCAAAGTGCTAGCCC 60.395 55.000 13.29 0.00 0.00 5.19
4402 4530 1.001641 CTGCCAAAGTGCTAGCCCT 60.002 57.895 13.29 2.10 0.00 5.19
4403 4531 1.303561 TGCCAAAGTGCTAGCCCTG 60.304 57.895 13.29 3.95 0.00 4.45
4404 4532 2.704808 GCCAAAGTGCTAGCCCTGC 61.705 63.158 13.29 1.95 0.00 4.85
4405 4533 2.048603 CCAAAGTGCTAGCCCTGCC 61.049 63.158 13.29 0.00 0.00 4.85
4406 4534 2.048603 CAAAGTGCTAGCCCTGCCC 61.049 63.158 13.29 0.00 0.00 5.36
4407 4535 2.538141 AAAGTGCTAGCCCTGCCCA 61.538 57.895 13.29 0.00 0.00 5.36
4408 4536 1.867595 AAAGTGCTAGCCCTGCCCAT 61.868 55.000 13.29 0.00 0.00 4.00
4409 4537 2.203266 GTGCTAGCCCTGCCCATC 60.203 66.667 13.29 0.00 0.00 3.51
4410 4538 2.691996 TGCTAGCCCTGCCCATCA 60.692 61.111 13.29 0.00 0.00 3.07
4411 4539 2.307942 TGCTAGCCCTGCCCATCAA 61.308 57.895 13.29 0.00 0.00 2.57
4412 4540 1.076777 GCTAGCCCTGCCCATCAAA 60.077 57.895 2.29 0.00 0.00 2.69
4413 4541 1.387295 GCTAGCCCTGCCCATCAAAC 61.387 60.000 2.29 0.00 0.00 2.93
4414 4542 1.077787 TAGCCCTGCCCATCAAACG 60.078 57.895 0.00 0.00 0.00 3.60
4415 4543 4.133796 GCCCTGCCCATCAAACGC 62.134 66.667 0.00 0.00 0.00 4.84
4416 4544 3.814268 CCCTGCCCATCAAACGCG 61.814 66.667 3.53 3.53 0.00 6.01
4417 4545 2.745884 CCTGCCCATCAAACGCGA 60.746 61.111 15.93 0.00 0.00 5.87
4418 4546 2.753966 CCTGCCCATCAAACGCGAG 61.754 63.158 15.93 1.66 0.00 5.03
4419 4547 3.386867 CTGCCCATCAAACGCGAGC 62.387 63.158 15.93 2.62 0.00 5.03
4420 4548 3.430862 GCCCATCAAACGCGAGCA 61.431 61.111 15.93 0.00 0.00 4.26
4421 4549 2.764314 GCCCATCAAACGCGAGCAT 61.764 57.895 15.93 0.00 0.00 3.79
4422 4550 1.063006 CCCATCAAACGCGAGCATG 59.937 57.895 15.93 9.06 0.00 4.06
4423 4551 1.368345 CCCATCAAACGCGAGCATGA 61.368 55.000 15.93 11.70 34.20 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 70 6.256053 TGCCTTTTCCCTTTCATTCTTATCT 58.744 36.000 0.00 0.00 0.00 1.98
174 180 3.863041 GGAGTGTAATTCCCTCTGACAC 58.137 50.000 0.00 0.00 36.60 3.67
222 232 5.694995 TCAAGAGACTTCCAAATTCCAAGT 58.305 37.500 0.00 0.00 32.93 3.16
223 233 6.208204 ACATCAAGAGACTTCCAAATTCCAAG 59.792 38.462 0.00 0.00 0.00 3.61
224 234 6.070656 ACATCAAGAGACTTCCAAATTCCAA 58.929 36.000 0.00 0.00 0.00 3.53
225 235 5.634118 ACATCAAGAGACTTCCAAATTCCA 58.366 37.500 0.00 0.00 0.00 3.53
266 276 5.483937 TCCTTGTCCATAGTTGATGTGTAGT 59.516 40.000 0.00 0.00 33.19 2.73
267 277 5.977635 TCCTTGTCCATAGTTGATGTGTAG 58.022 41.667 0.00 0.00 33.19 2.74
268 278 6.367374 TTCCTTGTCCATAGTTGATGTGTA 57.633 37.500 0.00 0.00 33.19 2.90
704 717 5.731678 AGGAAAACTATGAGGGAACTATGGT 59.268 40.000 0.00 0.00 44.43 3.55
732 746 4.559300 GCCTGTTCTTTATCAAGCAAAGCA 60.559 41.667 0.00 0.00 33.82 3.91
747 761 1.338579 GCTCTAAGCACTGCCTGTTCT 60.339 52.381 0.00 0.00 41.89 3.01
774 788 6.237313 ACGCAAGATTGAACTAACCTAAAC 57.763 37.500 0.00 0.00 43.62 2.01
917 932 4.691326 AACCTTAGCCCTAGTTATCAGC 57.309 45.455 0.00 0.00 0.00 4.26
996 1011 3.768757 CACTCCTGATCTCCTCCATATCC 59.231 52.174 0.00 0.00 0.00 2.59
1353 1368 9.533831 AGTGGGAAAAGAAAATATGTACTCAAT 57.466 29.630 0.00 0.00 0.00 2.57
1546 1561 0.963856 CACGGGTAAGCCTTTTCCCC 60.964 60.000 10.47 4.67 39.97 4.81
1549 1564 6.316890 TGATAATTACACGGGTAAGCCTTTTC 59.683 38.462 16.55 10.33 42.42 2.29
1554 1569 4.062991 CCTGATAATTACACGGGTAAGCC 58.937 47.826 16.55 5.52 42.42 4.35
1639 1654 3.668141 TGGGATATCATGTGCCAAGTT 57.332 42.857 4.83 0.00 33.87 2.66
1646 1661 5.144692 ACTCGAAGATGGGATATCATGTG 57.855 43.478 4.83 0.00 33.89 3.21
1648 1663 7.154656 TGTAAACTCGAAGATGGGATATCATG 58.845 38.462 4.83 0.00 33.89 3.07
1664 1679 7.028926 ACAGTAGTAGGATCATGTAAACTCG 57.971 40.000 0.00 0.00 0.00 4.18
1690 1705 7.436673 CACTAGAAGACATATTCAGTAAGCACC 59.563 40.741 0.00 0.00 0.00 5.01
1786 1801 1.749063 ACACATGAATCATGCCTGCAG 59.251 47.619 21.92 6.78 44.80 4.41
1819 1834 5.015515 TGGTGCAATCATGGTCAAGAAATA 58.984 37.500 0.00 0.00 0.00 1.40
1861 1876 3.153919 CACCTGCCAGTTAGCCTAAAAA 58.846 45.455 0.00 0.00 0.00 1.94
1862 1877 2.107552 ACACCTGCCAGTTAGCCTAAAA 59.892 45.455 0.00 0.00 0.00 1.52
1863 1878 1.702957 ACACCTGCCAGTTAGCCTAAA 59.297 47.619 0.00 0.00 0.00 1.85
1864 1879 1.358152 ACACCTGCCAGTTAGCCTAA 58.642 50.000 0.00 0.00 0.00 2.69
1865 1880 1.278127 GAACACCTGCCAGTTAGCCTA 59.722 52.381 0.00 0.00 0.00 3.93
1866 1881 0.036875 GAACACCTGCCAGTTAGCCT 59.963 55.000 0.00 0.00 0.00 4.58
1867 1882 0.036875 AGAACACCTGCCAGTTAGCC 59.963 55.000 0.00 0.00 0.00 3.93
1868 1883 1.160137 CAGAACACCTGCCAGTTAGC 58.840 55.000 0.00 0.00 35.89 3.09
1877 1892 5.241506 TCTTAATGAAAAGGCAGAACACCTG 59.758 40.000 0.00 0.00 45.67 4.00
1878 1893 5.385198 TCTTAATGAAAAGGCAGAACACCT 58.615 37.500 0.00 0.00 40.02 4.00
1879 1894 5.705609 TCTTAATGAAAAGGCAGAACACC 57.294 39.130 0.00 0.00 0.00 4.16
1880 1895 7.970614 CCTAATCTTAATGAAAAGGCAGAACAC 59.029 37.037 0.00 0.00 0.00 3.32
1881 1896 7.888021 TCCTAATCTTAATGAAAAGGCAGAACA 59.112 33.333 0.00 0.00 33.26 3.18
1882 1897 8.281212 TCCTAATCTTAATGAAAAGGCAGAAC 57.719 34.615 0.00 0.00 33.26 3.01
1883 1898 8.328758 TCTCCTAATCTTAATGAAAAGGCAGAA 58.671 33.333 0.00 0.00 33.26 3.02
1884 1899 7.861629 TCTCCTAATCTTAATGAAAAGGCAGA 58.138 34.615 0.00 0.00 33.26 4.26
1885 1900 7.989741 TCTCTCCTAATCTTAATGAAAAGGCAG 59.010 37.037 0.00 0.00 33.26 4.85
1886 1901 7.861629 TCTCTCCTAATCTTAATGAAAAGGCA 58.138 34.615 0.00 0.00 33.26 4.75
1887 1902 8.738645 TTCTCTCCTAATCTTAATGAAAAGGC 57.261 34.615 0.00 0.00 33.26 4.35
1891 1906 9.672673 CCTGTTTCTCTCCTAATCTTAATGAAA 57.327 33.333 0.00 0.00 0.00 2.69
1892 1907 8.267894 CCCTGTTTCTCTCCTAATCTTAATGAA 58.732 37.037 0.00 0.00 0.00 2.57
1893 1908 7.403231 ACCCTGTTTCTCTCCTAATCTTAATGA 59.597 37.037 0.00 0.00 0.00 2.57
1894 1909 7.569240 ACCCTGTTTCTCTCCTAATCTTAATG 58.431 38.462 0.00 0.00 0.00 1.90
1895 1910 7.757242 ACCCTGTTTCTCTCCTAATCTTAAT 57.243 36.000 0.00 0.00 0.00 1.40
1896 1911 8.855804 ATACCCTGTTTCTCTCCTAATCTTAA 57.144 34.615 0.00 0.00 0.00 1.85
1897 1912 8.855804 AATACCCTGTTTCTCTCCTAATCTTA 57.144 34.615 0.00 0.00 0.00 2.10
1898 1913 7.757242 AATACCCTGTTTCTCTCCTAATCTT 57.243 36.000 0.00 0.00 0.00 2.40
1899 1914 7.844779 TGTAATACCCTGTTTCTCTCCTAATCT 59.155 37.037 0.00 0.00 0.00 2.40
1900 1915 8.019656 TGTAATACCCTGTTTCTCTCCTAATC 57.980 38.462 0.00 0.00 0.00 1.75
1901 1916 7.989947 TGTAATACCCTGTTTCTCTCCTAAT 57.010 36.000 0.00 0.00 0.00 1.73
1902 1917 7.676893 TCTTGTAATACCCTGTTTCTCTCCTAA 59.323 37.037 0.00 0.00 0.00 2.69
1903 1918 7.186972 TCTTGTAATACCCTGTTTCTCTCCTA 58.813 38.462 0.00 0.00 0.00 2.94
1904 1919 6.023603 TCTTGTAATACCCTGTTTCTCTCCT 58.976 40.000 0.00 0.00 0.00 3.69
1905 1920 6.295719 TCTTGTAATACCCTGTTTCTCTCC 57.704 41.667 0.00 0.00 0.00 3.71
1906 1921 6.154706 TCCTCTTGTAATACCCTGTTTCTCTC 59.845 42.308 0.00 0.00 0.00 3.20
1907 1922 6.023603 TCCTCTTGTAATACCCTGTTTCTCT 58.976 40.000 0.00 0.00 0.00 3.10
1908 1923 6.295719 TCCTCTTGTAATACCCTGTTTCTC 57.704 41.667 0.00 0.00 0.00 2.87
1909 1924 5.338463 GCTCCTCTTGTAATACCCTGTTTCT 60.338 44.000 0.00 0.00 0.00 2.52
1910 1925 4.876679 GCTCCTCTTGTAATACCCTGTTTC 59.123 45.833 0.00 0.00 0.00 2.78
1911 1926 4.288626 TGCTCCTCTTGTAATACCCTGTTT 59.711 41.667 0.00 0.00 0.00 2.83
1912 1927 3.844211 TGCTCCTCTTGTAATACCCTGTT 59.156 43.478 0.00 0.00 0.00 3.16
1913 1928 3.450904 TGCTCCTCTTGTAATACCCTGT 58.549 45.455 0.00 0.00 0.00 4.00
1914 1929 3.181461 CCTGCTCCTCTTGTAATACCCTG 60.181 52.174 0.00 0.00 0.00 4.45
1915 1930 3.041946 CCTGCTCCTCTTGTAATACCCT 58.958 50.000 0.00 0.00 0.00 4.34
1916 1931 2.104963 CCCTGCTCCTCTTGTAATACCC 59.895 54.545 0.00 0.00 0.00 3.69
1917 1932 2.104963 CCCCTGCTCCTCTTGTAATACC 59.895 54.545 0.00 0.00 0.00 2.73
1918 1933 2.104963 CCCCCTGCTCCTCTTGTAATAC 59.895 54.545 0.00 0.00 0.00 1.89
1919 1934 2.022428 TCCCCCTGCTCCTCTTGTAATA 60.022 50.000 0.00 0.00 0.00 0.98
1920 1935 1.216990 CCCCCTGCTCCTCTTGTAAT 58.783 55.000 0.00 0.00 0.00 1.89
1921 1936 0.118346 TCCCCCTGCTCCTCTTGTAA 59.882 55.000 0.00 0.00 0.00 2.41
1922 1937 0.617820 GTCCCCCTGCTCCTCTTGTA 60.618 60.000 0.00 0.00 0.00 2.41
1923 1938 1.920835 GTCCCCCTGCTCCTCTTGT 60.921 63.158 0.00 0.00 0.00 3.16
1924 1939 1.908340 CTGTCCCCCTGCTCCTCTTG 61.908 65.000 0.00 0.00 0.00 3.02
1925 1940 1.614824 CTGTCCCCCTGCTCCTCTT 60.615 63.158 0.00 0.00 0.00 2.85
1926 1941 2.040278 CTGTCCCCCTGCTCCTCT 59.960 66.667 0.00 0.00 0.00 3.69
1927 1942 3.086600 CCTGTCCCCCTGCTCCTC 61.087 72.222 0.00 0.00 0.00 3.71
1928 1943 4.748798 CCCTGTCCCCCTGCTCCT 62.749 72.222 0.00 0.00 0.00 3.69
1931 1946 3.658346 TATGCCCTGTCCCCCTGCT 62.658 63.158 0.00 0.00 0.00 4.24
1932 1947 3.096495 TATGCCCTGTCCCCCTGC 61.096 66.667 0.00 0.00 0.00 4.85
1933 1948 2.455565 CCTATGCCCTGTCCCCCTG 61.456 68.421 0.00 0.00 0.00 4.45
1934 1949 1.990370 ATCCTATGCCCTGTCCCCCT 61.990 60.000 0.00 0.00 0.00 4.79
1935 1950 1.068352 AATCCTATGCCCTGTCCCCC 61.068 60.000 0.00 0.00 0.00 5.40
1936 1951 1.742308 TAATCCTATGCCCTGTCCCC 58.258 55.000 0.00 0.00 0.00 4.81
1937 1952 2.711547 ACTTAATCCTATGCCCTGTCCC 59.288 50.000 0.00 0.00 0.00 4.46
1938 1953 4.439253 AACTTAATCCTATGCCCTGTCC 57.561 45.455 0.00 0.00 0.00 4.02
1939 1954 6.483640 CAGTTAACTTAATCCTATGCCCTGTC 59.516 42.308 5.07 0.00 0.00 3.51
1940 1955 6.157994 TCAGTTAACTTAATCCTATGCCCTGT 59.842 38.462 5.07 0.00 0.00 4.00
1941 1956 6.591935 TCAGTTAACTTAATCCTATGCCCTG 58.408 40.000 5.07 0.00 0.00 4.45
1942 1957 6.824958 TCAGTTAACTTAATCCTATGCCCT 57.175 37.500 5.07 0.00 0.00 5.19
1943 1958 7.454225 AGATCAGTTAACTTAATCCTATGCCC 58.546 38.462 18.03 0.19 0.00 5.36
1944 1959 8.910351 AAGATCAGTTAACTTAATCCTATGCC 57.090 34.615 18.03 0.72 0.00 4.40
2042 2057 7.811713 GCTTGCTAGTTCTTCATTGAGAAAAAT 59.188 33.333 0.00 0.00 37.40 1.82
2043 2058 7.141363 GCTTGCTAGTTCTTCATTGAGAAAAA 58.859 34.615 0.00 0.00 37.40 1.94
2254 2269 2.427095 GTCTGTTTTGACACCTTTGGCT 59.573 45.455 0.00 0.00 36.97 4.75
2299 2314 2.125106 GGGTCGGTGAGTGATGGC 60.125 66.667 0.00 0.00 0.00 4.40
2320 2335 1.303561 TGGCTTCTTCTGCGGCAAT 60.304 52.632 3.44 0.00 0.00 3.56
2442 2457 3.613559 AGATTTAGGGGGCATCCTACAT 58.386 45.455 5.49 5.23 38.97 2.29
2460 2475 4.093998 CGTAGCAGCAATGTTCTTCAAGAT 59.906 41.667 0.00 0.00 0.00 2.40
2501 2518 9.278978 TGCAAGTTATCTTAGTGTAATGTTTGA 57.721 29.630 0.00 0.00 32.07 2.69
2587 2605 6.028146 TCTGAACATTTGCATTGTGCTATT 57.972 33.333 9.13 0.00 45.31 1.73
2588 2606 5.648178 TCTGAACATTTGCATTGTGCTAT 57.352 34.783 9.13 0.00 45.31 2.97
2711 2729 9.794685 GAGGAGAAAATGGAAAGAAAATATGTC 57.205 33.333 0.00 0.00 0.00 3.06
2715 2733 9.532494 TCATGAGGAGAAAATGGAAAGAAAATA 57.468 29.630 0.00 0.00 0.00 1.40
2716 2734 8.426569 TCATGAGGAGAAAATGGAAAGAAAAT 57.573 30.769 0.00 0.00 0.00 1.82
2733 2752 1.137675 CACGAATCCTGCTCATGAGGA 59.862 52.381 23.89 20.40 43.92 3.71
2751 2770 1.188863 AAATCCTGCAGATTGCCCAC 58.811 50.000 17.39 0.00 44.75 4.61
2799 2818 1.812922 CCATGAGTGTGAGAGCGCC 60.813 63.158 2.29 0.00 0.00 6.53
2837 2856 2.357777 GGTATGTAGGCCCCATTTGTGT 60.358 50.000 10.53 0.00 0.00 3.72
2847 2866 0.400093 AGTGGGGAGGTATGTAGGCC 60.400 60.000 0.00 0.00 0.00 5.19
2856 2875 2.529744 GGTCTGCAAGTGGGGAGGT 61.530 63.158 0.00 0.00 33.76 3.85
2910 2929 1.164411 TGATGTTGGTCATTGCGGAC 58.836 50.000 0.00 0.00 36.83 4.79
2913 2932 2.032550 GGAGATGATGTTGGTCATTGCG 59.967 50.000 0.00 0.00 38.88 4.85
2970 2989 5.510520 GCTCTGACAGGAGGAAATTATCGAT 60.511 44.000 2.16 2.16 34.21 3.59
2973 2992 4.813697 GTGCTCTGACAGGAGGAAATTATC 59.186 45.833 1.81 0.00 35.57 1.75
3018 3037 1.225704 GGATGTAGCTGGCCTGCTT 59.774 57.895 37.77 23.04 43.74 3.91
3048 3067 0.107312 GGTGCTCTGCATCTGATGGT 60.107 55.000 18.60 0.00 41.91 3.55
3087 3106 1.066152 GGAAGATCAAGCGGAATTGCC 59.934 52.381 0.00 0.00 34.65 4.52
3093 3112 2.186903 GCCGGAAGATCAAGCGGA 59.813 61.111 5.05 0.00 0.00 5.54
3099 3118 1.699054 CCATCCCAGCCGGAAGATCA 61.699 60.000 5.05 0.00 46.47 2.92
3451 3473 5.186797 ACTGCTCTCTACTGCACTCTAAAAT 59.813 40.000 0.00 0.00 35.20 1.82
3462 3484 4.131596 GAGGTAGGTACTGCTCTCTACTG 58.868 52.174 0.00 0.00 42.03 2.74
3472 3494 2.672098 AGCAGATGGAGGTAGGTACTG 58.328 52.381 0.00 0.00 41.52 2.74
3475 3497 5.862422 ATACTAGCAGATGGAGGTAGGTA 57.138 43.478 0.00 0.00 40.43 3.08
3501 3523 7.661536 ACTCTAATACCTCTTCATGCTAACA 57.338 36.000 0.00 0.00 0.00 2.41
3508 3530 7.976734 CAGAACGAAACTCTAATACCTCTTCAT 59.023 37.037 0.00 0.00 0.00 2.57
3511 3533 7.229581 ACAGAACGAAACTCTAATACCTCTT 57.770 36.000 0.00 0.00 0.00 2.85
3558 3580 7.992608 TCATCCTATTACATTGTAGCACACATT 59.007 33.333 0.00 0.00 36.90 2.71
3570 3592 7.283127 AGTTGCACGAATTCATCCTATTACATT 59.717 33.333 6.22 0.00 0.00 2.71
3574 3596 8.902540 ATTAGTTGCACGAATTCATCCTATTA 57.097 30.769 6.22 0.00 0.00 0.98
3575 3597 7.498900 TGATTAGTTGCACGAATTCATCCTATT 59.501 33.333 6.22 0.00 0.00 1.73
3576 3598 6.992123 TGATTAGTTGCACGAATTCATCCTAT 59.008 34.615 6.22 0.00 0.00 2.57
3644 3666 2.939103 GCTGAGCTATGTTTACACAGGG 59.061 50.000 0.00 0.00 35.94 4.45
3646 3668 3.868077 GGAGCTGAGCTATGTTTACACAG 59.132 47.826 7.08 0.00 39.88 3.66
3709 3736 5.324409 AGGCAGTTCATTCAGAAACCATAA 58.676 37.500 0.00 0.00 38.13 1.90
3711 3738 3.771216 AGGCAGTTCATTCAGAAACCAT 58.229 40.909 0.00 0.00 38.13 3.55
3714 3741 6.372659 TCAGATTAGGCAGTTCATTCAGAAAC 59.627 38.462 0.00 0.00 38.13 2.78
3723 3750 3.701542 AGACGATCAGATTAGGCAGTTCA 59.298 43.478 0.00 0.00 0.00 3.18
3746 3773 0.476771 ACTGGGGGAAAAAGAAGCGA 59.523 50.000 0.00 0.00 0.00 4.93
3748 3775 3.133901 TCAAAACTGGGGGAAAAAGAAGC 59.866 43.478 0.00 0.00 0.00 3.86
3758 3785 4.609301 TCCATTTATCTCAAAACTGGGGG 58.391 43.478 0.00 0.00 0.00 5.40
3773 3801 1.612199 GCACCGACAACCCTCCATTTA 60.612 52.381 0.00 0.00 0.00 1.40
3803 3831 6.670464 TCCTATACCAGTGATCCTTTTACACA 59.330 38.462 0.00 0.00 37.05 3.72
3810 3838 6.443849 TGTTTCTTCCTATACCAGTGATCCTT 59.556 38.462 0.00 0.00 0.00 3.36
3820 3848 3.124560 GCGAGCTGTTTCTTCCTATACC 58.875 50.000 0.00 0.00 0.00 2.73
3825 3853 2.300437 ACTAAGCGAGCTGTTTCTTCCT 59.700 45.455 0.00 0.00 0.00 3.36
3826 3854 2.668945 GACTAAGCGAGCTGTTTCTTCC 59.331 50.000 0.00 0.00 0.00 3.46
3837 3871 1.227002 GGGAAGCGGACTAAGCGAG 60.227 63.158 0.00 0.00 40.04 5.03
3839 3873 1.519455 CAGGGAAGCGGACTAAGCG 60.519 63.158 0.00 0.00 40.04 4.68
3853 3910 0.602905 GGACGACCTTGTTGTCAGGG 60.603 60.000 14.72 0.00 45.79 4.45
3874 3931 3.755628 GTCCTACTGGGCGCACGA 61.756 66.667 10.83 0.00 34.39 4.35
3882 3939 1.561643 TCAGAGCCAAGTCCTACTGG 58.438 55.000 0.00 0.00 0.00 4.00
3913 3970 3.261250 ACTGACCAGTCCGTACGAT 57.739 52.632 18.76 0.00 36.92 3.73
3928 3990 2.266055 GGGAGGCTTCGTGGACTG 59.734 66.667 0.00 0.00 0.00 3.51
4020 4147 2.991250 AGTACATAGCAGGCCACAAAG 58.009 47.619 5.01 0.00 0.00 2.77
4025 4152 2.437651 TGCATAAGTACATAGCAGGCCA 59.562 45.455 5.01 0.00 0.00 5.36
4037 4164 2.737359 CGCGAACTTCCCTGCATAAGTA 60.737 50.000 0.00 0.00 34.91 2.24
4038 4165 1.739067 GCGAACTTCCCTGCATAAGT 58.261 50.000 4.00 4.00 37.54 2.24
4039 4166 0.652592 CGCGAACTTCCCTGCATAAG 59.347 55.000 0.00 0.00 0.00 1.73
4040 4167 0.742990 CCGCGAACTTCCCTGCATAA 60.743 55.000 8.23 0.00 0.00 1.90
4072 4199 0.250467 AATGCGAGCAAGTGACAGGT 60.250 50.000 0.57 0.00 0.00 4.00
4091 4218 1.136774 CGTCGAGACCGCAGATTCA 59.863 57.895 0.00 0.00 35.37 2.57
4125 4252 4.615834 GCCGCCGCAAACGTCAAA 62.616 61.111 0.00 0.00 37.70 2.69
4186 4314 1.277842 TCAAAATGTCCGCAGCCTCTA 59.722 47.619 0.00 0.00 0.00 2.43
4190 4318 1.154225 CGTCAAAATGTCCGCAGCC 60.154 57.895 0.00 0.00 0.00 4.85
4199 4327 5.569059 GGTGCTAATCTGAAACGTCAAAATG 59.431 40.000 0.00 0.00 31.88 2.32
4201 4329 4.576873 TGGTGCTAATCTGAAACGTCAAAA 59.423 37.500 0.00 0.00 31.88 2.44
4220 4348 1.028905 TTTTTGAGAACGGCCTGGTG 58.971 50.000 0.00 0.00 0.00 4.17
4224 4352 3.430236 CCTTTTGTTTTTGAGAACGGCCT 60.430 43.478 0.00 0.00 32.18 5.19
4230 4358 6.983890 GGTGCTAATCCTTTTGTTTTTGAGAA 59.016 34.615 0.00 0.00 0.00 2.87
4231 4359 6.097554 TGGTGCTAATCCTTTTGTTTTTGAGA 59.902 34.615 0.00 0.00 0.00 3.27
4232 4360 6.279882 TGGTGCTAATCCTTTTGTTTTTGAG 58.720 36.000 0.00 0.00 0.00 3.02
4233 4361 6.227298 TGGTGCTAATCCTTTTGTTTTTGA 57.773 33.333 0.00 0.00 0.00 2.69
4234 4362 5.466393 CCTGGTGCTAATCCTTTTGTTTTTG 59.534 40.000 0.00 0.00 0.00 2.44
4235 4363 5.610398 CCTGGTGCTAATCCTTTTGTTTTT 58.390 37.500 0.00 0.00 0.00 1.94
4236 4364 4.503123 GCCTGGTGCTAATCCTTTTGTTTT 60.503 41.667 0.00 0.00 36.87 2.43
4237 4365 3.006859 GCCTGGTGCTAATCCTTTTGTTT 59.993 43.478 0.00 0.00 36.87 2.83
4238 4366 2.562738 GCCTGGTGCTAATCCTTTTGTT 59.437 45.455 0.00 0.00 36.87 2.83
4239 4367 2.171003 GCCTGGTGCTAATCCTTTTGT 58.829 47.619 0.00 0.00 36.87 2.83
4240 4368 1.478105 GGCCTGGTGCTAATCCTTTTG 59.522 52.381 0.00 0.00 40.92 2.44
4241 4369 1.852633 GGCCTGGTGCTAATCCTTTT 58.147 50.000 0.00 0.00 40.92 2.27
4242 4370 0.394352 CGGCCTGGTGCTAATCCTTT 60.394 55.000 0.00 0.00 40.92 3.11
4243 4371 1.224592 CGGCCTGGTGCTAATCCTT 59.775 57.895 0.00 0.00 40.92 3.36
4244 4372 2.911143 CGGCCTGGTGCTAATCCT 59.089 61.111 0.00 0.00 40.92 3.24
4245 4373 2.902343 GCGGCCTGGTGCTAATCC 60.902 66.667 0.00 0.00 40.92 3.01
4246 4374 2.902343 GGCGGCCTGGTGCTAATC 60.902 66.667 12.87 0.00 40.92 1.75
4247 4375 3.704231 CTGGCGGCCTGGTGCTAAT 62.704 63.158 21.46 0.00 40.92 1.73
4248 4376 4.408821 CTGGCGGCCTGGTGCTAA 62.409 66.667 21.46 0.00 40.92 3.09
4252 4380 3.944250 AATTCCTGGCGGCCTGGTG 62.944 63.158 34.97 17.61 42.31 4.17
4253 4381 1.858739 TAAATTCCTGGCGGCCTGGT 61.859 55.000 34.97 22.77 42.31 4.00
4254 4382 1.077068 TAAATTCCTGGCGGCCTGG 60.077 57.895 32.48 32.48 42.93 4.45
4255 4383 1.714899 CGTAAATTCCTGGCGGCCTG 61.715 60.000 21.46 19.64 0.00 4.85
4256 4384 1.451387 CGTAAATTCCTGGCGGCCT 60.451 57.895 21.46 0.00 0.00 5.19
4257 4385 2.478033 CCGTAAATTCCTGGCGGCC 61.478 63.158 13.32 13.32 35.90 6.13
4258 4386 3.107447 CCGTAAATTCCTGGCGGC 58.893 61.111 0.00 0.00 35.90 6.53
4259 4387 3.107447 GCCGTAAATTCCTGGCGG 58.893 61.111 4.11 4.11 44.60 6.13
4262 4390 4.142469 CCAAAGTAAGCCGTAAATTCCTGG 60.142 45.833 0.00 0.00 0.00 4.45
4263 4391 4.457949 ACCAAAGTAAGCCGTAAATTCCTG 59.542 41.667 0.00 0.00 0.00 3.86
4264 4392 4.659115 ACCAAAGTAAGCCGTAAATTCCT 58.341 39.130 0.00 0.00 0.00 3.36
4265 4393 5.048573 TGAACCAAAGTAAGCCGTAAATTCC 60.049 40.000 0.00 0.00 0.00 3.01
4266 4394 6.004408 TGAACCAAAGTAAGCCGTAAATTC 57.996 37.500 0.00 0.00 0.00 2.17
4267 4395 5.766174 TCTGAACCAAAGTAAGCCGTAAATT 59.234 36.000 0.00 0.00 0.00 1.82
4268 4396 5.310451 TCTGAACCAAAGTAAGCCGTAAAT 58.690 37.500 0.00 0.00 0.00 1.40
4269 4397 4.706035 TCTGAACCAAAGTAAGCCGTAAA 58.294 39.130 0.00 0.00 0.00 2.01
4270 4398 4.339872 TCTGAACCAAAGTAAGCCGTAA 57.660 40.909 0.00 0.00 0.00 3.18
4271 4399 4.546829 ATCTGAACCAAAGTAAGCCGTA 57.453 40.909 0.00 0.00 0.00 4.02
4272 4400 2.922740 TCTGAACCAAAGTAAGCCGT 57.077 45.000 0.00 0.00 0.00 5.68
4273 4401 5.220854 CCATTATCTGAACCAAAGTAAGCCG 60.221 44.000 0.00 0.00 0.00 5.52
4274 4402 5.652452 ACCATTATCTGAACCAAAGTAAGCC 59.348 40.000 0.00 0.00 0.00 4.35
4275 4403 6.183360 GGACCATTATCTGAACCAAAGTAAGC 60.183 42.308 0.00 0.00 0.00 3.09
4276 4404 6.037172 CGGACCATTATCTGAACCAAAGTAAG 59.963 42.308 0.00 0.00 0.00 2.34
4277 4405 5.878116 CGGACCATTATCTGAACCAAAGTAA 59.122 40.000 0.00 0.00 0.00 2.24
4278 4406 5.188163 TCGGACCATTATCTGAACCAAAGTA 59.812 40.000 0.00 0.00 30.80 2.24
4279 4407 4.019681 TCGGACCATTATCTGAACCAAAGT 60.020 41.667 0.00 0.00 30.80 2.66
4280 4408 4.513442 TCGGACCATTATCTGAACCAAAG 58.487 43.478 0.00 0.00 30.80 2.77
4281 4409 4.561500 TCGGACCATTATCTGAACCAAA 57.438 40.909 0.00 0.00 30.80 3.28
4282 4410 4.019681 ACTTCGGACCATTATCTGAACCAA 60.020 41.667 0.00 0.00 38.74 3.67
4283 4411 3.517901 ACTTCGGACCATTATCTGAACCA 59.482 43.478 0.00 0.00 38.74 3.67
4284 4412 4.120589 GACTTCGGACCATTATCTGAACC 58.879 47.826 0.00 0.00 38.74 3.62
4285 4413 5.012328 AGACTTCGGACCATTATCTGAAC 57.988 43.478 0.00 0.00 38.74 3.18
4286 4414 5.892119 AGTAGACTTCGGACCATTATCTGAA 59.108 40.000 0.00 0.00 40.86 3.02
4287 4415 5.446860 AGTAGACTTCGGACCATTATCTGA 58.553 41.667 0.00 0.00 31.92 3.27
4288 4416 5.776173 AGTAGACTTCGGACCATTATCTG 57.224 43.478 0.00 0.00 0.00 2.90
4289 4417 6.363065 TGTAGTAGACTTCGGACCATTATCT 58.637 40.000 0.00 0.00 0.00 1.98
4290 4418 6.294065 CCTGTAGTAGACTTCGGACCATTATC 60.294 46.154 0.00 0.00 0.00 1.75
4291 4419 5.535406 CCTGTAGTAGACTTCGGACCATTAT 59.465 44.000 0.00 0.00 0.00 1.28
4292 4420 4.885907 CCTGTAGTAGACTTCGGACCATTA 59.114 45.833 0.00 0.00 0.00 1.90
4293 4421 3.700038 CCTGTAGTAGACTTCGGACCATT 59.300 47.826 0.00 0.00 0.00 3.16
4294 4422 3.288964 CCTGTAGTAGACTTCGGACCAT 58.711 50.000 0.00 0.00 0.00 3.55
4295 4423 2.719739 CCTGTAGTAGACTTCGGACCA 58.280 52.381 0.00 0.00 0.00 4.02
4296 4424 1.404748 GCCTGTAGTAGACTTCGGACC 59.595 57.143 0.00 0.00 0.00 4.46
4297 4425 1.404748 GGCCTGTAGTAGACTTCGGAC 59.595 57.143 0.00 0.00 0.00 4.79
4298 4426 1.760192 GGCCTGTAGTAGACTTCGGA 58.240 55.000 0.00 0.00 0.00 4.55
4299 4427 0.381089 CGGCCTGTAGTAGACTTCGG 59.619 60.000 0.00 0.00 0.00 4.30
4300 4428 0.381089 CCGGCCTGTAGTAGACTTCG 59.619 60.000 0.00 0.00 0.00 3.79
4301 4429 0.102663 GCCGGCCTGTAGTAGACTTC 59.897 60.000 18.11 0.00 0.00 3.01
4302 4430 0.324460 AGCCGGCCTGTAGTAGACTT 60.324 55.000 26.15 0.00 0.00 3.01
4303 4431 0.324460 AAGCCGGCCTGTAGTAGACT 60.324 55.000 26.15 0.00 0.00 3.24
4304 4432 0.535797 AAAGCCGGCCTGTAGTAGAC 59.464 55.000 26.15 0.00 0.00 2.59
4305 4433 2.029623 CTAAAGCCGGCCTGTAGTAGA 58.970 52.381 26.15 0.00 0.00 2.59
4306 4434 2.029623 TCTAAAGCCGGCCTGTAGTAG 58.970 52.381 26.15 15.09 33.72 2.57
4307 4435 1.753073 GTCTAAAGCCGGCCTGTAGTA 59.247 52.381 26.15 9.30 33.72 1.82
4308 4436 0.535797 GTCTAAAGCCGGCCTGTAGT 59.464 55.000 26.15 0.00 33.72 2.73
4309 4437 0.179081 GGTCTAAAGCCGGCCTGTAG 60.179 60.000 26.15 21.21 33.34 2.74
4310 4438 1.619807 GGGTCTAAAGCCGGCCTGTA 61.620 60.000 26.15 12.10 32.35 2.74
4311 4439 2.669240 GGTCTAAAGCCGGCCTGT 59.331 61.111 26.15 11.49 0.00 4.00
4312 4440 2.124695 GGGTCTAAAGCCGGCCTG 60.125 66.667 26.15 11.17 32.35 4.85
4313 4441 2.001269 ATGGGTCTAAAGCCGGCCT 61.001 57.895 26.15 14.06 46.58 5.19
4314 4442 1.823899 CATGGGTCTAAAGCCGGCC 60.824 63.158 26.15 6.12 46.58 6.13
4315 4443 2.481471 GCATGGGTCTAAAGCCGGC 61.481 63.158 21.89 21.89 46.58 6.13
4316 4444 2.180204 CGCATGGGTCTAAAGCCGG 61.180 63.158 0.00 0.00 46.58 6.13
4317 4445 1.153449 TCGCATGGGTCTAAAGCCG 60.153 57.895 9.86 0.00 46.58 5.52
4318 4446 0.178068 TCTCGCATGGGTCTAAAGCC 59.822 55.000 9.86 0.00 43.74 4.35
4319 4447 2.024176 TTCTCGCATGGGTCTAAAGC 57.976 50.000 9.86 0.00 0.00 3.51
4320 4448 3.797039 TCATTCTCGCATGGGTCTAAAG 58.203 45.455 9.86 0.00 0.00 1.85
4321 4449 3.904800 TCATTCTCGCATGGGTCTAAA 57.095 42.857 9.86 1.18 0.00 1.85
4322 4450 3.552890 CGATCATTCTCGCATGGGTCTAA 60.553 47.826 9.86 3.51 0.00 2.10
4323 4451 2.029918 CGATCATTCTCGCATGGGTCTA 60.030 50.000 9.86 0.00 0.00 2.59
4324 4452 1.269988 CGATCATTCTCGCATGGGTCT 60.270 52.381 9.86 0.00 0.00 3.85
4325 4453 1.143305 CGATCATTCTCGCATGGGTC 58.857 55.000 9.86 0.00 0.00 4.46
4326 4454 0.752658 TCGATCATTCTCGCATGGGT 59.247 50.000 9.86 0.00 38.52 4.51
4327 4455 1.143305 GTCGATCATTCTCGCATGGG 58.857 55.000 2.76 2.76 38.52 4.00
4328 4456 1.143305 GGTCGATCATTCTCGCATGG 58.857 55.000 0.00 0.00 38.52 3.66
4329 4457 1.791204 CAGGTCGATCATTCTCGCATG 59.209 52.381 0.00 0.00 38.52 4.06
4330 4458 1.269988 CCAGGTCGATCATTCTCGCAT 60.270 52.381 0.00 0.00 38.52 4.73
4331 4459 0.103026 CCAGGTCGATCATTCTCGCA 59.897 55.000 0.00 0.00 38.52 5.10
4332 4460 0.103208 ACCAGGTCGATCATTCTCGC 59.897 55.000 0.00 0.00 38.52 5.03
4333 4461 1.405463 TGACCAGGTCGATCATTCTCG 59.595 52.381 15.24 0.00 39.99 4.04
4334 4462 2.796383 CGTGACCAGGTCGATCATTCTC 60.796 54.545 15.24 0.00 34.95 2.87
4335 4463 1.135139 CGTGACCAGGTCGATCATTCT 59.865 52.381 15.24 0.00 34.95 2.40
4336 4464 1.134367 TCGTGACCAGGTCGATCATTC 59.866 52.381 15.24 0.00 34.95 2.67
4337 4465 1.182667 TCGTGACCAGGTCGATCATT 58.817 50.000 15.24 0.00 34.95 2.57
4338 4466 1.182667 TTCGTGACCAGGTCGATCAT 58.817 50.000 15.24 0.00 34.95 2.45
4339 4467 1.134367 GATTCGTGACCAGGTCGATCA 59.866 52.381 15.24 0.00 34.95 2.92
4340 4468 1.405821 AGATTCGTGACCAGGTCGATC 59.594 52.381 15.24 14.09 34.95 3.69
4341 4469 1.135139 CAGATTCGTGACCAGGTCGAT 59.865 52.381 15.24 6.23 34.95 3.59
4342 4470 0.526211 CAGATTCGTGACCAGGTCGA 59.474 55.000 15.24 7.21 34.95 4.20
4343 4471 1.078759 GCAGATTCGTGACCAGGTCG 61.079 60.000 15.24 4.66 34.95 4.79
4344 4472 0.037326 TGCAGATTCGTGACCAGGTC 60.037 55.000 13.35 13.35 0.00 3.85
4345 4473 0.396435 TTGCAGATTCGTGACCAGGT 59.604 50.000 0.00 0.00 0.00 4.00
4346 4474 1.399440 CATTGCAGATTCGTGACCAGG 59.601 52.381 0.00 0.00 0.00 4.45
4347 4475 1.202110 GCATTGCAGATTCGTGACCAG 60.202 52.381 3.15 0.00 0.00 4.00
4348 4476 0.804364 GCATTGCAGATTCGTGACCA 59.196 50.000 3.15 0.00 0.00 4.02
4349 4477 1.089920 AGCATTGCAGATTCGTGACC 58.910 50.000 11.91 0.00 0.00 4.02
4350 4478 4.340894 TTTAGCATTGCAGATTCGTGAC 57.659 40.909 11.91 0.00 0.00 3.67
4351 4479 5.369685 TTTTTAGCATTGCAGATTCGTGA 57.630 34.783 11.91 0.00 0.00 4.35
4371 4499 4.984161 CACTTTGGCAGATTCGTGATTTTT 59.016 37.500 0.00 0.00 0.00 1.94
4372 4500 4.549458 CACTTTGGCAGATTCGTGATTTT 58.451 39.130 0.00 0.00 0.00 1.82
4373 4501 3.612479 GCACTTTGGCAGATTCGTGATTT 60.612 43.478 0.84 0.00 0.00 2.17
4374 4502 2.095059 GCACTTTGGCAGATTCGTGATT 60.095 45.455 0.84 0.00 0.00 2.57
4375 4503 1.470098 GCACTTTGGCAGATTCGTGAT 59.530 47.619 0.84 0.00 0.00 3.06
4376 4504 0.874390 GCACTTTGGCAGATTCGTGA 59.126 50.000 0.84 0.00 0.00 4.35
4377 4505 0.877071 AGCACTTTGGCAGATTCGTG 59.123 50.000 0.00 0.00 35.83 4.35
4378 4506 2.350522 CTAGCACTTTGGCAGATTCGT 58.649 47.619 0.00 0.00 35.83 3.85
4379 4507 1.063174 GCTAGCACTTTGGCAGATTCG 59.937 52.381 10.63 0.00 35.83 3.34
4380 4508 1.403323 GGCTAGCACTTTGGCAGATTC 59.597 52.381 18.24 0.00 35.83 2.52
4381 4509 1.467920 GGCTAGCACTTTGGCAGATT 58.532 50.000 18.24 0.00 35.83 2.40
4382 4510 0.394899 GGGCTAGCACTTTGGCAGAT 60.395 55.000 18.24 0.00 35.83 2.90
4383 4511 1.002134 GGGCTAGCACTTTGGCAGA 60.002 57.895 18.24 0.00 35.83 4.26
4384 4512 1.001641 AGGGCTAGCACTTTGGCAG 60.002 57.895 15.55 0.00 35.83 4.85
4385 4513 1.303561 CAGGGCTAGCACTTTGGCA 60.304 57.895 19.30 0.00 35.83 4.92
4386 4514 2.704808 GCAGGGCTAGCACTTTGGC 61.705 63.158 19.30 14.84 0.00 4.52
4387 4515 2.048603 GGCAGGGCTAGCACTTTGG 61.049 63.158 19.30 7.71 0.00 3.28
4388 4516 2.048603 GGGCAGGGCTAGCACTTTG 61.049 63.158 19.30 9.59 31.20 2.77
4389 4517 1.867595 ATGGGCAGGGCTAGCACTTT 61.868 55.000 19.30 0.00 36.08 2.66
4390 4518 2.276309 GATGGGCAGGGCTAGCACTT 62.276 60.000 19.30 1.15 36.08 3.16
4391 4519 2.693864 ATGGGCAGGGCTAGCACT 60.694 61.111 15.55 15.55 36.08 4.40
4392 4520 2.203266 GATGGGCAGGGCTAGCAC 60.203 66.667 18.24 14.32 35.50 4.40
4393 4521 1.862049 TTTGATGGGCAGGGCTAGCA 61.862 55.000 18.24 0.00 0.00 3.49
4394 4522 1.076777 TTTGATGGGCAGGGCTAGC 60.077 57.895 6.04 6.04 0.00 3.42
4395 4523 1.097547 CGTTTGATGGGCAGGGCTAG 61.098 60.000 0.00 0.00 0.00 3.42
4396 4524 1.077787 CGTTTGATGGGCAGGGCTA 60.078 57.895 0.00 0.00 0.00 3.93
4397 4525 2.361610 CGTTTGATGGGCAGGGCT 60.362 61.111 0.00 0.00 0.00 5.19
4398 4526 4.133796 GCGTTTGATGGGCAGGGC 62.134 66.667 0.00 0.00 0.00 5.19
4399 4527 3.814268 CGCGTTTGATGGGCAGGG 61.814 66.667 0.00 0.00 0.00 4.45
4400 4528 2.745884 TCGCGTTTGATGGGCAGG 60.746 61.111 5.77 0.00 0.00 4.85
4401 4529 2.787249 CTCGCGTTTGATGGGCAG 59.213 61.111 5.77 0.00 0.00 4.85
4402 4530 3.430862 GCTCGCGTTTGATGGGCA 61.431 61.111 5.77 0.00 0.00 5.36
4403 4531 2.764314 ATGCTCGCGTTTGATGGGC 61.764 57.895 5.77 0.00 0.00 5.36
4404 4532 1.063006 CATGCTCGCGTTTGATGGG 59.937 57.895 5.77 0.00 0.00 4.00
4405 4533 2.089017 TCATGCTCGCGTTTGATGG 58.911 52.632 5.77 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.