Multiple sequence alignment - TraesCS6A01G307000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G307000 chr6A 100.000 2762 0 0 1 2762 540830548 540827787 0.000000e+00 5101
1 TraesCS6A01G307000 chr7B 83.296 1784 230 40 848 2600 744311757 744310011 0.000000e+00 1581
2 TraesCS6A01G307000 chr7B 77.478 1261 250 23 1035 2269 748501946 748503198 0.000000e+00 725
3 TraesCS6A01G307000 chr7B 77.389 1287 242 31 1040 2292 746424136 746422865 0.000000e+00 719
4 TraesCS6A01G307000 chr7B 79.478 804 155 6 947 1746 745673143 745672346 1.860000e-156 562
5 TraesCS6A01G307000 chr7A 86.307 1278 156 11 865 2139 736307763 736306502 0.000000e+00 1373
6 TraesCS6A01G307000 chr7A 87.163 631 76 4 1079 1705 736266765 736266136 0.000000e+00 712
7 TraesCS6A01G307000 chr7A 78.237 1089 208 17 1028 2105 734918005 734919075 0.000000e+00 671
8 TraesCS6A01G307000 chr7A 79.133 738 104 31 986 1705 736261999 736261294 5.390000e-127 464
9 TraesCS6A01G307000 chr7A 77.446 603 112 12 1280 1880 734551881 734551301 3.410000e-89 339
10 TraesCS6A01G307000 chr7A 82.661 248 40 1 1021 1265 736082686 736082439 1.670000e-52 217
11 TraesCS6A01G307000 chr7A 88.806 134 11 4 2596 2726 701131078 701130946 7.920000e-36 161
12 TraesCS6A01G307000 chr7A 78.537 205 19 11 572 770 736307975 736307790 8.090000e-21 111
13 TraesCS6A01G307000 chr2D 94.097 576 28 6 1 572 9507723 9507150 0.000000e+00 870
14 TraesCS6A01G307000 chr2D 94.097 576 27 6 1 572 9516504 9515932 0.000000e+00 869
15 TraesCS6A01G307000 chr3D 93.621 580 32 5 1 577 30399762 30399185 0.000000e+00 861
16 TraesCS6A01G307000 chr3D 94.035 570 31 3 1 570 591823205 591823771 0.000000e+00 861
17 TraesCS6A01G307000 chr3D 93.739 575 25 10 1 571 64672062 64672629 0.000000e+00 852
18 TraesCS6A01G307000 chr3D 93.403 576 31 6 1 573 147433719 147433148 0.000000e+00 846
19 TraesCS6A01G307000 chrUn 93.565 575 30 6 1 572 43364098 43364668 0.000000e+00 850
20 TraesCS6A01G307000 chrUn 79.618 157 27 3 1052 1204 43584235 43584080 1.050000e-19 108
21 TraesCS6A01G307000 chr4D 93.056 576 33 7 1 574 400826189 400826759 0.000000e+00 835
22 TraesCS6A01G307000 chr6D 93.019 573 36 4 1 572 380973682 380974251 0.000000e+00 833
23 TraesCS6A01G307000 chr7D 78.093 1091 207 20 1028 2105 632834348 632835419 0.000000e+00 662
24 TraesCS6A01G307000 chr7D 89.313 131 12 2 2597 2727 611009564 611009692 2.200000e-36 163
25 TraesCS6A01G307000 chr1B 91.667 144 9 2 2597 2738 688349120 688349262 2.170000e-46 196
26 TraesCS6A01G307000 chr1B 91.870 123 10 0 2598 2720 603297532 603297410 3.660000e-39 172
27 TraesCS6A01G307000 chr4A 91.489 141 12 0 2598 2738 715710708 715710848 7.800000e-46 195
28 TraesCS6A01G307000 chr3B 88.276 145 14 2 2597 2738 792363489 792363633 1.320000e-38 171
29 TraesCS6A01G307000 chr5D 86.667 150 17 3 2593 2740 11436454 11436602 2.200000e-36 163
30 TraesCS6A01G307000 chr5B 87.681 138 16 1 2597 2733 219059001 219059138 2.850000e-35 159
31 TraesCS6A01G307000 chr1D 87.943 141 9 7 2597 2735 440708584 440708450 2.850000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G307000 chr6A 540827787 540830548 2761 True 5101 5101 100.000 1 2762 1 chr6A.!!$R1 2761
1 TraesCS6A01G307000 chr7B 744310011 744311757 1746 True 1581 1581 83.296 848 2600 1 chr7B.!!$R1 1752
2 TraesCS6A01G307000 chr7B 748501946 748503198 1252 False 725 725 77.478 1035 2269 1 chr7B.!!$F1 1234
3 TraesCS6A01G307000 chr7B 746422865 746424136 1271 True 719 719 77.389 1040 2292 1 chr7B.!!$R3 1252
4 TraesCS6A01G307000 chr7B 745672346 745673143 797 True 562 562 79.478 947 1746 1 chr7B.!!$R2 799
5 TraesCS6A01G307000 chr7A 736306502 736307975 1473 True 742 1373 82.422 572 2139 2 chr7A.!!$R6 1567
6 TraesCS6A01G307000 chr7A 736266136 736266765 629 True 712 712 87.163 1079 1705 1 chr7A.!!$R5 626
7 TraesCS6A01G307000 chr7A 734918005 734919075 1070 False 671 671 78.237 1028 2105 1 chr7A.!!$F1 1077
8 TraesCS6A01G307000 chr7A 736261294 736261999 705 True 464 464 79.133 986 1705 1 chr7A.!!$R4 719
9 TraesCS6A01G307000 chr7A 734551301 734551881 580 True 339 339 77.446 1280 1880 1 chr7A.!!$R2 600
10 TraesCS6A01G307000 chr2D 9507150 9507723 573 True 870 870 94.097 1 572 1 chr2D.!!$R1 571
11 TraesCS6A01G307000 chr2D 9515932 9516504 572 True 869 869 94.097 1 572 1 chr2D.!!$R2 571
12 TraesCS6A01G307000 chr3D 30399185 30399762 577 True 861 861 93.621 1 577 1 chr3D.!!$R1 576
13 TraesCS6A01G307000 chr3D 591823205 591823771 566 False 861 861 94.035 1 570 1 chr3D.!!$F2 569
14 TraesCS6A01G307000 chr3D 64672062 64672629 567 False 852 852 93.739 1 571 1 chr3D.!!$F1 570
15 TraesCS6A01G307000 chr3D 147433148 147433719 571 True 846 846 93.403 1 573 1 chr3D.!!$R2 572
16 TraesCS6A01G307000 chrUn 43364098 43364668 570 False 850 850 93.565 1 572 1 chrUn.!!$F1 571
17 TraesCS6A01G307000 chr4D 400826189 400826759 570 False 835 835 93.056 1 574 1 chr4D.!!$F1 573
18 TraesCS6A01G307000 chr6D 380973682 380974251 569 False 833 833 93.019 1 572 1 chr6D.!!$F1 571
19 TraesCS6A01G307000 chr7D 632834348 632835419 1071 False 662 662 78.093 1028 2105 1 chr7D.!!$F2 1077

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 668 0.107848 ATAAGCCGTCGGAAACTGGG 60.108 55.0 17.49 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 1821 0.033228 CTCTGCCCGGATGATCTGTC 59.967 60.0 0.73 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 4.319622 CGTTATTTGGAACGTGGCTTAACA 60.320 41.667 0.00 0.00 45.55 2.41
102 103 2.091775 ACAGGATAGAGCCCGAGTTAGT 60.092 50.000 0.00 0.00 0.00 2.24
154 155 1.675641 GTGGGCGCTCTGGAATTGT 60.676 57.895 9.62 0.00 0.00 2.71
222 223 2.304761 AGGTTATTTTCAGAGCCACGGA 59.695 45.455 0.00 0.00 0.00 4.69
223 224 3.054361 AGGTTATTTTCAGAGCCACGGAT 60.054 43.478 0.00 0.00 0.00 4.18
312 313 0.468214 CTGGGAGATGGTAGCTCGGA 60.468 60.000 0.00 0.00 33.19 4.55
331 332 3.936453 CGGAATATCTTCAACCGGTTTGA 59.064 43.478 19.55 16.31 42.83 2.69
415 417 1.947456 GGCGTCCTTTATTTGGCTAGG 59.053 52.381 0.00 0.00 0.00 3.02
428 432 4.699925 TTGGCTAGGTTGTGTTTCTAGT 57.300 40.909 0.00 0.00 34.55 2.57
474 478 9.399403 GCTACTTTTTACTTTTCATTTGGAGAG 57.601 33.333 0.00 0.00 0.00 3.20
604 609 2.027169 GAGTATTCGTCCGCCCCG 59.973 66.667 0.00 0.00 0.00 5.73
605 610 2.757099 AGTATTCGTCCGCCCCGT 60.757 61.111 0.00 0.00 0.00 5.28
606 611 1.447317 GAGTATTCGTCCGCCCCGTA 61.447 60.000 0.00 0.00 0.00 4.02
607 612 1.008079 GTATTCGTCCGCCCCGTAG 60.008 63.158 0.00 0.00 0.00 3.51
609 614 0.179032 TATTCGTCCGCCCCGTAGTA 60.179 55.000 0.00 0.00 0.00 1.82
610 615 0.825010 ATTCGTCCGCCCCGTAGTAT 60.825 55.000 0.00 0.00 0.00 2.12
611 616 0.179032 TTCGTCCGCCCCGTAGTATA 60.179 55.000 0.00 0.00 0.00 1.47
612 617 0.179032 TCGTCCGCCCCGTAGTATAA 60.179 55.000 0.00 0.00 0.00 0.98
613 618 0.883833 CGTCCGCCCCGTAGTATAAT 59.116 55.000 0.00 0.00 0.00 1.28
614 619 2.083774 CGTCCGCCCCGTAGTATAATA 58.916 52.381 0.00 0.00 0.00 0.98
615 620 2.487762 CGTCCGCCCCGTAGTATAATAA 59.512 50.000 0.00 0.00 0.00 1.40
618 628 4.158394 GTCCGCCCCGTAGTATAATAATGA 59.842 45.833 0.00 0.00 0.00 2.57
622 632 6.596497 CCGCCCCGTAGTATAATAATGAAAAT 59.404 38.462 0.00 0.00 0.00 1.82
648 658 5.991328 TCAATCAAGAATCATAAGCCGTC 57.009 39.130 0.00 0.00 0.00 4.79
650 660 2.821546 TCAAGAATCATAAGCCGTCGG 58.178 47.619 6.99 6.99 0.00 4.79
656 666 2.004583 TCATAAGCCGTCGGAAACTG 57.995 50.000 17.49 6.73 0.00 3.16
657 667 1.006832 CATAAGCCGTCGGAAACTGG 58.993 55.000 17.49 0.00 0.00 4.00
658 668 0.107848 ATAAGCCGTCGGAAACTGGG 60.108 55.000 17.49 0.00 0.00 4.45
659 669 1.186917 TAAGCCGTCGGAAACTGGGA 61.187 55.000 17.49 0.00 0.00 4.37
660 670 2.031465 GCCGTCGGAAACTGGGAA 59.969 61.111 17.49 0.00 0.00 3.97
661 671 2.322830 GCCGTCGGAAACTGGGAAC 61.323 63.158 17.49 0.00 0.00 3.62
694 704 3.231734 CAGTGACTGGAAATGGCGA 57.768 52.632 4.28 0.00 0.00 5.54
695 705 1.742761 CAGTGACTGGAAATGGCGAT 58.257 50.000 4.28 0.00 0.00 4.58
696 706 2.086869 CAGTGACTGGAAATGGCGATT 58.913 47.619 4.28 0.00 0.00 3.34
697 707 2.489329 CAGTGACTGGAAATGGCGATTT 59.511 45.455 6.37 6.37 34.29 2.17
698 708 2.489329 AGTGACTGGAAATGGCGATTTG 59.511 45.455 11.72 0.16 31.58 2.32
712 722 2.639751 CGATTTGCTGCCTAATTACGC 58.360 47.619 0.00 0.03 0.00 4.42
713 723 2.287915 CGATTTGCTGCCTAATTACGCT 59.712 45.455 7.77 0.00 0.00 5.07
714 724 3.621794 GATTTGCTGCCTAATTACGCTG 58.378 45.455 7.77 8.08 0.00 5.18
715 725 2.394930 TTGCTGCCTAATTACGCTGA 57.605 45.000 14.47 1.62 0.00 4.26
716 726 2.394930 TGCTGCCTAATTACGCTGAA 57.605 45.000 14.47 4.31 0.00 3.02
717 727 2.705730 TGCTGCCTAATTACGCTGAAA 58.294 42.857 14.47 2.82 0.00 2.69
758 768 4.381292 GCTTTGAGATTAGCAATGCCACTT 60.381 41.667 0.00 0.00 39.25 3.16
765 775 4.707030 TTAGCAATGCCACTTGATGAAG 57.293 40.909 0.00 0.00 35.07 3.02
766 776 1.822990 AGCAATGCCACTTGATGAAGG 59.177 47.619 0.00 0.00 32.95 3.46
767 777 1.820519 GCAATGCCACTTGATGAAGGA 59.179 47.619 0.00 0.00 32.95 3.36
768 778 2.231964 GCAATGCCACTTGATGAAGGAA 59.768 45.455 0.00 0.00 32.95 3.36
769 779 3.306225 GCAATGCCACTTGATGAAGGAAA 60.306 43.478 0.00 0.00 32.95 3.13
770 780 4.800249 GCAATGCCACTTGATGAAGGAAAA 60.800 41.667 0.00 0.00 32.95 2.29
771 781 4.796038 ATGCCACTTGATGAAGGAAAAG 57.204 40.909 0.00 0.00 32.95 2.27
772 782 3.831323 TGCCACTTGATGAAGGAAAAGA 58.169 40.909 0.00 0.00 32.95 2.52
773 783 3.569701 TGCCACTTGATGAAGGAAAAGAC 59.430 43.478 0.00 0.00 32.95 3.01
774 784 3.057245 GCCACTTGATGAAGGAAAAGACC 60.057 47.826 0.00 0.00 32.95 3.85
775 785 3.507622 CCACTTGATGAAGGAAAAGACCC 59.492 47.826 0.00 0.00 32.95 4.46
776 786 4.144297 CACTTGATGAAGGAAAAGACCCA 58.856 43.478 0.00 0.00 32.95 4.51
777 787 4.217118 CACTTGATGAAGGAAAAGACCCAG 59.783 45.833 0.00 0.00 32.95 4.45
778 788 3.439857 TGATGAAGGAAAAGACCCAGG 57.560 47.619 0.00 0.00 0.00 4.45
779 789 2.716424 TGATGAAGGAAAAGACCCAGGT 59.284 45.455 0.00 0.00 0.00 4.00
780 790 2.951229 TGAAGGAAAAGACCCAGGTC 57.049 50.000 8.88 8.88 44.86 3.85
781 791 1.423921 TGAAGGAAAAGACCCAGGTCC 59.576 52.381 13.27 0.00 45.59 4.46
782 792 1.423921 GAAGGAAAAGACCCAGGTCCA 59.576 52.381 13.27 0.00 45.59 4.02
783 793 1.529744 AGGAAAAGACCCAGGTCCAA 58.470 50.000 13.27 0.00 45.59 3.53
784 794 2.073776 AGGAAAAGACCCAGGTCCAAT 58.926 47.619 13.27 0.00 45.59 3.16
785 795 3.265489 AGGAAAAGACCCAGGTCCAATA 58.735 45.455 13.27 0.00 45.59 1.90
786 796 3.267031 AGGAAAAGACCCAGGTCCAATAG 59.733 47.826 13.27 0.00 45.59 1.73
787 797 3.621558 GAAAAGACCCAGGTCCAATAGG 58.378 50.000 13.27 0.00 45.59 2.57
788 798 2.661176 AAGACCCAGGTCCAATAGGA 57.339 50.000 13.27 0.00 45.59 2.94
803 813 6.367983 TCCAATAGGATTTTCTTCCATCAGG 58.632 40.000 0.00 0.00 39.61 3.86
821 831 8.058235 TCCATCAGGGAAACAACATTATATTGA 58.942 33.333 1.71 0.00 44.80 2.57
916 926 2.416547 CACGCACAGAAATCTTACCCAG 59.583 50.000 0.00 0.00 0.00 4.45
917 927 2.038557 ACGCACAGAAATCTTACCCAGT 59.961 45.455 0.00 0.00 0.00 4.00
918 928 3.259876 ACGCACAGAAATCTTACCCAGTA 59.740 43.478 0.00 0.00 0.00 2.74
939 949 2.383527 CGTGCGTGCTCCTTCCTTC 61.384 63.158 0.00 0.00 0.00 3.46
945 980 1.925455 TGCTCCTTCCTTCCCCCAG 60.925 63.158 0.00 0.00 0.00 4.45
958 993 1.152247 CCCCAGATCGATCCCTCCA 60.152 63.158 21.66 0.00 0.00 3.86
963 998 2.523245 CAGATCGATCCCTCCATCTCA 58.477 52.381 21.66 0.00 0.00 3.27
1015 1050 2.124612 CCATGATCTGCCGCCACA 60.125 61.111 0.00 0.00 0.00 4.17
1057 1095 0.171455 GGAAGACGACGACATGCTCT 59.829 55.000 0.00 0.00 0.00 4.09
1233 1277 6.504398 TCACGATGATAAGATCAAGTACACC 58.496 40.000 0.00 0.00 43.50 4.16
1266 1310 2.187946 CCAGACCGCATCCCTCAC 59.812 66.667 0.00 0.00 0.00 3.51
1356 1405 2.961669 CTTACACCGGTTGCGCACC 61.962 63.158 11.12 14.48 43.16 5.01
1402 1451 1.406751 CCGGTAATCAGCACCATGTGA 60.407 52.381 0.00 0.00 35.23 3.58
1422 1471 2.882137 GACAATTCCACCCGAGTTCAAA 59.118 45.455 0.00 0.00 0.00 2.69
1534 1584 1.702299 CTGCTTACGCGCACTACAC 59.298 57.895 5.73 0.00 39.65 2.90
1598 1648 1.427809 TGGGCCGATCTCATCTCAAT 58.572 50.000 0.00 0.00 0.00 2.57
1606 1656 5.468592 CCGATCTCATCTCAATAGAGGTTG 58.531 45.833 0.00 0.00 42.34 3.77
1618 1668 9.740710 TCTCAATAGAGGTTGAATATCGAGATA 57.259 33.333 0.00 0.00 42.34 1.98
1698 1753 2.504175 TGTGAAGGAGGGTATACTTGCC 59.496 50.000 2.25 1.94 0.00 4.52
1731 1786 2.022195 AGGCATAGCTTTGATGTGCTG 58.978 47.619 8.49 0.00 40.08 4.41
1761 1816 4.286032 CCTCCCGGTATGAATCATTCCTAA 59.714 45.833 15.34 2.17 30.62 2.69
1766 1821 4.152402 CGGTATGAATCATTCCTAAAGCCG 59.848 45.833 15.34 7.29 30.62 5.52
1767 1822 5.305585 GGTATGAATCATTCCTAAAGCCGA 58.694 41.667 11.08 0.00 30.26 5.54
1778 1833 2.398498 CTAAAGCCGACAGATCATCCG 58.602 52.381 0.00 0.00 0.00 4.18
1817 1872 0.039617 GGTCTCGCCATGATCTCTCG 60.040 60.000 0.00 0.00 37.17 4.04
1820 1875 2.356793 CGCCATGATCTCTCGCCC 60.357 66.667 0.00 0.00 0.00 6.13
1916 1971 7.092716 ACCATTGAAACAGATAACATTCTTGC 58.907 34.615 0.00 0.00 0.00 4.01
1917 1972 7.092079 CCATTGAAACAGATAACATTCTTGCA 58.908 34.615 0.00 0.00 0.00 4.08
1920 1975 8.523523 TTGAAACAGATAACATTCTTGCATTG 57.476 30.769 0.00 0.00 0.00 2.82
1942 1997 0.042731 TCCTCGGATTGAAGGAGGGT 59.957 55.000 6.48 0.00 45.91 4.34
1944 1999 2.116238 CCTCGGATTGAAGGAGGGTTA 58.884 52.381 0.00 0.00 42.91 2.85
2034 2092 7.562135 ACGGTGTCTATATGGTTCAACTAAAT 58.438 34.615 0.00 0.00 0.00 1.40
2037 2095 9.391006 GGTGTCTATATGGTTCAACTAAATTCA 57.609 33.333 0.00 0.00 0.00 2.57
2068 2126 3.203716 AGGAAACTTTGTGAAGACCGTC 58.796 45.455 0.00 0.00 37.44 4.79
2077 2138 4.087510 TGTGAAGACCGTCGTATTAGTG 57.912 45.455 0.00 0.00 0.00 2.74
2105 2166 8.908786 TGTCATTCTTTCAAGAGTTTCTATGT 57.091 30.769 0.00 0.00 36.22 2.29
2108 2169 7.663081 TCATTCTTTCAAGAGTTTCTATGTGCT 59.337 33.333 0.00 0.00 36.22 4.40
2170 2251 2.951457 TCCGTGAATGCTCGAATACA 57.049 45.000 0.00 0.00 33.14 2.29
2181 2262 8.037166 TGAATGCTCGAATACATATGCTAGATT 58.963 33.333 1.58 0.00 0.00 2.40
2193 2274 8.060931 ACATATGCTAGATTGACGATCATAGT 57.939 34.615 1.58 0.00 37.22 2.12
2293 2375 8.246180 GGAATGTCATCATCAGTACATTGTTTT 58.754 33.333 4.41 0.00 41.37 2.43
2319 2402 3.501828 TGTGTGTTATCATTCAGTGTGGC 59.498 43.478 0.00 0.00 0.00 5.01
2327 2410 2.101415 TCATTCAGTGTGGCTATCTCCG 59.899 50.000 0.00 0.00 0.00 4.63
2336 2419 0.032815 GGCTATCTCCGTCCTTGAGC 59.967 60.000 0.00 0.00 0.00 4.26
2340 2423 0.387202 ATCTCCGTCCTTGAGCGATG 59.613 55.000 0.00 0.00 0.00 3.84
2341 2424 0.679960 TCTCCGTCCTTGAGCGATGA 60.680 55.000 0.00 0.00 0.00 2.92
2342 2425 0.526524 CTCCGTCCTTGAGCGATGAC 60.527 60.000 0.00 0.00 0.00 3.06
2343 2426 1.215382 CCGTCCTTGAGCGATGACA 59.785 57.895 0.00 0.00 0.00 3.58
2344 2427 0.389817 CCGTCCTTGAGCGATGACAA 60.390 55.000 0.00 0.00 0.00 3.18
2345 2428 1.428448 CGTCCTTGAGCGATGACAAA 58.572 50.000 0.00 0.00 0.00 2.83
2346 2429 1.126846 CGTCCTTGAGCGATGACAAAC 59.873 52.381 0.00 0.00 0.00 2.93
2347 2430 1.464997 GTCCTTGAGCGATGACAAACC 59.535 52.381 0.00 0.00 0.00 3.27
2348 2431 1.071542 TCCTTGAGCGATGACAAACCA 59.928 47.619 0.00 0.00 0.00 3.67
2349 2432 1.879380 CCTTGAGCGATGACAAACCAA 59.121 47.619 0.00 0.00 0.00 3.67
2350 2433 2.293122 CCTTGAGCGATGACAAACCAAA 59.707 45.455 0.00 0.00 0.00 3.28
2351 2434 3.057315 CCTTGAGCGATGACAAACCAAAT 60.057 43.478 0.00 0.00 0.00 2.32
2352 2435 4.155826 CCTTGAGCGATGACAAACCAAATA 59.844 41.667 0.00 0.00 0.00 1.40
2353 2436 5.163622 CCTTGAGCGATGACAAACCAAATAT 60.164 40.000 0.00 0.00 0.00 1.28
2354 2437 5.233957 TGAGCGATGACAAACCAAATATG 57.766 39.130 0.00 0.00 0.00 1.78
2355 2438 4.940654 TGAGCGATGACAAACCAAATATGA 59.059 37.500 0.00 0.00 0.00 2.15
2356 2439 5.414144 TGAGCGATGACAAACCAAATATGAA 59.586 36.000 0.00 0.00 0.00 2.57
2357 2440 6.072230 TGAGCGATGACAAACCAAATATGAAA 60.072 34.615 0.00 0.00 0.00 2.69
2358 2441 6.866480 AGCGATGACAAACCAAATATGAAAT 58.134 32.000 0.00 0.00 0.00 2.17
2359 2442 6.753279 AGCGATGACAAACCAAATATGAAATG 59.247 34.615 0.00 0.00 0.00 2.32
2360 2443 6.751425 GCGATGACAAACCAAATATGAAATGA 59.249 34.615 0.00 0.00 0.00 2.57
2361 2444 7.253750 GCGATGACAAACCAAATATGAAATGAC 60.254 37.037 0.00 0.00 0.00 3.06
2362 2445 7.970061 CGATGACAAACCAAATATGAAATGACT 59.030 33.333 0.00 0.00 0.00 3.41
2412 2495 9.793259 ATGGTTAACTCATTCTTACTTTTGAGA 57.207 29.630 5.42 0.00 38.25 3.27
2489 2572 6.899393 AGAAACAAGGCTGATTGATAAACA 57.101 33.333 0.00 0.00 34.20 2.83
2523 2619 2.094675 GTTGGTATTGCTGGCTGTGAT 58.905 47.619 0.00 0.00 0.00 3.06
2528 2624 5.247862 TGGTATTGCTGGCTGTGATATATG 58.752 41.667 0.00 0.00 0.00 1.78
2529 2625 4.095483 GGTATTGCTGGCTGTGATATATGC 59.905 45.833 0.00 0.00 0.00 3.14
2530 2626 2.189594 TGCTGGCTGTGATATATGCC 57.810 50.000 5.11 5.11 45.10 4.40
2546 2642 5.830799 ATATGCCTGATTGATGGTAGTGA 57.169 39.130 0.00 0.00 0.00 3.41
2549 2645 4.661222 TGCCTGATTGATGGTAGTGAAAA 58.339 39.130 0.00 0.00 0.00 2.29
2550 2646 5.076182 TGCCTGATTGATGGTAGTGAAAAA 58.924 37.500 0.00 0.00 0.00 1.94
2591 2687 1.816835 CAACTCAACTGGATGCATGCT 59.183 47.619 20.33 4.11 0.00 3.79
2593 2689 3.354948 ACTCAACTGGATGCATGCTTA 57.645 42.857 20.33 0.00 0.00 3.09
2597 2693 4.018490 TCAACTGGATGCATGCTTACATT 58.982 39.130 18.11 10.59 32.87 2.71
2600 2696 5.410355 ACTGGATGCATGCTTACATTTTT 57.590 34.783 18.11 1.95 32.87 1.94
2601 2697 5.413499 ACTGGATGCATGCTTACATTTTTC 58.587 37.500 18.11 0.00 32.87 2.29
2602 2698 4.422840 TGGATGCATGCTTACATTTTTCG 58.577 39.130 20.33 0.00 32.87 3.46
2603 2699 4.157472 TGGATGCATGCTTACATTTTTCGA 59.843 37.500 20.33 0.00 32.87 3.71
2604 2700 4.500477 GGATGCATGCTTACATTTTTCGAC 59.500 41.667 20.33 0.00 32.87 4.20
2605 2701 4.495911 TGCATGCTTACATTTTTCGACA 57.504 36.364 20.33 0.00 32.87 4.35
2606 2702 4.864633 TGCATGCTTACATTTTTCGACAA 58.135 34.783 20.33 0.00 32.87 3.18
2607 2703 5.284864 TGCATGCTTACATTTTTCGACAAA 58.715 33.333 20.33 0.00 32.87 2.83
2608 2704 5.401972 TGCATGCTTACATTTTTCGACAAAG 59.598 36.000 20.33 0.00 32.87 2.77
2609 2705 5.164061 GCATGCTTACATTTTTCGACAAAGG 60.164 40.000 11.37 7.12 32.87 3.11
2610 2706 4.865776 TGCTTACATTTTTCGACAAAGGG 58.134 39.130 12.69 5.52 0.00 3.95
2611 2707 4.339814 TGCTTACATTTTTCGACAAAGGGT 59.660 37.500 12.69 10.42 0.00 4.34
2612 2708 4.679654 GCTTACATTTTTCGACAAAGGGTG 59.320 41.667 12.69 4.49 0.00 4.61
2613 2709 3.726291 ACATTTTTCGACAAAGGGTGG 57.274 42.857 12.69 0.00 0.00 4.61
2614 2710 3.292460 ACATTTTTCGACAAAGGGTGGA 58.708 40.909 12.69 0.00 31.87 4.02
2615 2711 3.895041 ACATTTTTCGACAAAGGGTGGAT 59.105 39.130 12.69 0.00 34.00 3.41
2616 2712 4.343814 ACATTTTTCGACAAAGGGTGGATT 59.656 37.500 12.69 0.00 34.00 3.01
2617 2713 5.163353 ACATTTTTCGACAAAGGGTGGATTT 60.163 36.000 12.69 0.00 34.00 2.17
2618 2714 5.346181 TTTTTCGACAAAGGGTGGATTTT 57.654 34.783 0.00 0.00 34.00 1.82
2619 2715 6.466885 TTTTTCGACAAAGGGTGGATTTTA 57.533 33.333 0.00 0.00 34.00 1.52
2620 2716 6.658188 TTTTCGACAAAGGGTGGATTTTAT 57.342 33.333 0.00 0.00 34.00 1.40
2621 2717 6.658188 TTTCGACAAAGGGTGGATTTTATT 57.342 33.333 0.00 0.00 34.00 1.40
2622 2718 5.637006 TCGACAAAGGGTGGATTTTATTG 57.363 39.130 0.00 0.00 28.37 1.90
2623 2719 4.461081 TCGACAAAGGGTGGATTTTATTGG 59.539 41.667 0.00 0.00 28.37 3.16
2624 2720 4.503910 GACAAAGGGTGGATTTTATTGGC 58.496 43.478 0.00 0.00 0.00 4.52
2625 2721 4.167319 ACAAAGGGTGGATTTTATTGGCT 58.833 39.130 0.00 0.00 0.00 4.75
2626 2722 4.222810 ACAAAGGGTGGATTTTATTGGCTC 59.777 41.667 0.00 0.00 0.00 4.70
2627 2723 3.756082 AGGGTGGATTTTATTGGCTCA 57.244 42.857 0.00 0.00 0.00 4.26
2628 2724 4.059773 AGGGTGGATTTTATTGGCTCAA 57.940 40.909 0.00 0.00 0.00 3.02
2629 2725 4.424842 AGGGTGGATTTTATTGGCTCAAA 58.575 39.130 0.00 0.00 0.00 2.69
2630 2726 4.843516 AGGGTGGATTTTATTGGCTCAAAA 59.156 37.500 0.00 0.00 0.00 2.44
2631 2727 5.488561 AGGGTGGATTTTATTGGCTCAAAAT 59.511 36.000 4.65 4.65 37.12 1.82
2632 2728 5.585844 GGGTGGATTTTATTGGCTCAAAATG 59.414 40.000 8.34 0.00 35.14 2.32
2633 2729 5.585844 GGTGGATTTTATTGGCTCAAAATGG 59.414 40.000 8.34 0.00 35.14 3.16
2634 2730 6.405538 GTGGATTTTATTGGCTCAAAATGGA 58.594 36.000 8.34 0.00 35.14 3.41
2635 2731 6.536224 GTGGATTTTATTGGCTCAAAATGGAG 59.464 38.462 8.34 0.00 35.14 3.86
2662 2758 7.700322 TCGAGAGAATACAAACATAATGAGC 57.300 36.000 0.00 0.00 37.03 4.26
2663 2759 7.264947 TCGAGAGAATACAAACATAATGAGCA 58.735 34.615 0.00 0.00 37.03 4.26
2664 2760 7.928167 TCGAGAGAATACAAACATAATGAGCAT 59.072 33.333 0.00 0.00 37.03 3.79
2665 2761 9.196552 CGAGAGAATACAAACATAATGAGCATA 57.803 33.333 0.00 0.00 0.00 3.14
2671 2767 9.806448 AATACAAACATAATGAGCATATACCCA 57.194 29.630 0.00 0.00 0.00 4.51
2672 2768 7.750229 ACAAACATAATGAGCATATACCCAG 57.250 36.000 0.00 0.00 0.00 4.45
2673 2769 6.207417 ACAAACATAATGAGCATATACCCAGC 59.793 38.462 0.00 0.00 0.00 4.85
2674 2770 4.848357 ACATAATGAGCATATACCCAGCC 58.152 43.478 0.00 0.00 0.00 4.85
2675 2771 4.537688 ACATAATGAGCATATACCCAGCCT 59.462 41.667 0.00 0.00 0.00 4.58
2676 2772 3.710209 AATGAGCATATACCCAGCCTC 57.290 47.619 0.00 0.00 0.00 4.70
2677 2773 2.405618 TGAGCATATACCCAGCCTCT 57.594 50.000 0.00 0.00 0.00 3.69
2678 2774 1.973515 TGAGCATATACCCAGCCTCTG 59.026 52.381 0.00 0.00 0.00 3.35
2679 2775 0.689623 AGCATATACCCAGCCTCTGC 59.310 55.000 0.00 0.00 37.95 4.26
2680 2776 0.397941 GCATATACCCAGCCTCTGCA 59.602 55.000 0.00 0.00 41.13 4.41
2681 2777 1.004044 GCATATACCCAGCCTCTGCAT 59.996 52.381 0.00 0.00 41.13 3.96
2682 2778 2.237143 GCATATACCCAGCCTCTGCATA 59.763 50.000 0.00 0.00 41.13 3.14
2683 2779 3.307691 GCATATACCCAGCCTCTGCATAA 60.308 47.826 0.00 0.00 41.13 1.90
2684 2780 2.938956 ATACCCAGCCTCTGCATAAC 57.061 50.000 0.00 0.00 41.13 1.89
2685 2781 1.879575 TACCCAGCCTCTGCATAACT 58.120 50.000 0.00 0.00 41.13 2.24
2686 2782 1.879575 ACCCAGCCTCTGCATAACTA 58.120 50.000 0.00 0.00 41.13 2.24
2687 2783 2.196595 ACCCAGCCTCTGCATAACTAA 58.803 47.619 0.00 0.00 41.13 2.24
2688 2784 2.171448 ACCCAGCCTCTGCATAACTAAG 59.829 50.000 0.00 0.00 41.13 2.18
2689 2785 2.435805 CCCAGCCTCTGCATAACTAAGA 59.564 50.000 0.00 0.00 41.13 2.10
2690 2786 3.072184 CCCAGCCTCTGCATAACTAAGAT 59.928 47.826 0.00 0.00 41.13 2.40
2691 2787 4.063689 CCAGCCTCTGCATAACTAAGATG 58.936 47.826 0.00 0.00 41.13 2.90
2700 2796 4.542662 CATAACTAAGATGCACACAGCC 57.457 45.455 0.00 0.00 44.83 4.85
2701 2797 2.566833 AACTAAGATGCACACAGCCA 57.433 45.000 0.00 0.00 44.83 4.75
2702 2798 2.566833 ACTAAGATGCACACAGCCAA 57.433 45.000 0.00 0.00 44.83 4.52
2703 2799 2.154462 ACTAAGATGCACACAGCCAAC 58.846 47.619 0.00 0.00 44.83 3.77
2704 2800 2.153645 CTAAGATGCACACAGCCAACA 58.846 47.619 0.00 0.00 44.83 3.33
2705 2801 1.624336 AAGATGCACACAGCCAACAT 58.376 45.000 0.00 0.00 44.83 2.71
2706 2802 1.624336 AGATGCACACAGCCAACATT 58.376 45.000 0.00 0.00 44.83 2.71
2707 2803 2.794103 AGATGCACACAGCCAACATTA 58.206 42.857 0.00 0.00 44.83 1.90
2708 2804 3.156293 AGATGCACACAGCCAACATTAA 58.844 40.909 0.00 0.00 44.83 1.40
2709 2805 2.791383 TGCACACAGCCAACATTAAC 57.209 45.000 0.00 0.00 44.83 2.01
2710 2806 1.001924 TGCACACAGCCAACATTAACG 60.002 47.619 0.00 0.00 44.83 3.18
2711 2807 1.685302 CACACAGCCAACATTAACGC 58.315 50.000 0.00 0.00 0.00 4.84
2712 2808 1.001924 CACACAGCCAACATTAACGCA 60.002 47.619 0.00 0.00 0.00 5.24
2713 2809 1.001815 ACACAGCCAACATTAACGCAC 60.002 47.619 0.00 0.00 0.00 5.34
2714 2810 1.001924 CACAGCCAACATTAACGCACA 60.002 47.619 0.00 0.00 0.00 4.57
2715 2811 1.001815 ACAGCCAACATTAACGCACAC 60.002 47.619 0.00 0.00 0.00 3.82
2716 2812 1.001924 CAGCCAACATTAACGCACACA 60.002 47.619 0.00 0.00 0.00 3.72
2717 2813 1.001815 AGCCAACATTAACGCACACAC 60.002 47.619 0.00 0.00 0.00 3.82
2718 2814 1.268794 GCCAACATTAACGCACACACA 60.269 47.619 0.00 0.00 0.00 3.72
2719 2815 2.380660 CCAACATTAACGCACACACAC 58.619 47.619 0.00 0.00 0.00 3.82
2720 2816 2.223363 CCAACATTAACGCACACACACA 60.223 45.455 0.00 0.00 0.00 3.72
2721 2817 3.430008 CAACATTAACGCACACACACAA 58.570 40.909 0.00 0.00 0.00 3.33
2722 2818 3.766676 ACATTAACGCACACACACAAA 57.233 38.095 0.00 0.00 0.00 2.83
2723 2819 4.098055 ACATTAACGCACACACACAAAA 57.902 36.364 0.00 0.00 0.00 2.44
2724 2820 4.486090 ACATTAACGCACACACACAAAAA 58.514 34.783 0.00 0.00 0.00 1.94
2725 2821 4.560819 ACATTAACGCACACACACAAAAAG 59.439 37.500 0.00 0.00 0.00 2.27
2726 2822 1.345410 AACGCACACACACAAAAAGC 58.655 45.000 0.00 0.00 0.00 3.51
2727 2823 0.242286 ACGCACACACACAAAAAGCA 59.758 45.000 0.00 0.00 0.00 3.91
2728 2824 0.639756 CGCACACACACAAAAAGCAC 59.360 50.000 0.00 0.00 0.00 4.40
2729 2825 1.707632 GCACACACACAAAAAGCACA 58.292 45.000 0.00 0.00 0.00 4.57
2730 2826 1.389784 GCACACACACAAAAAGCACAC 59.610 47.619 0.00 0.00 0.00 3.82
2731 2827 1.991965 CACACACACAAAAAGCACACC 59.008 47.619 0.00 0.00 0.00 4.16
2732 2828 1.267365 CACACACAAAAAGCACACCG 58.733 50.000 0.00 0.00 0.00 4.94
2733 2829 1.135546 CACACACAAAAAGCACACCGA 60.136 47.619 0.00 0.00 0.00 4.69
2734 2830 1.748493 ACACACAAAAAGCACACCGAT 59.252 42.857 0.00 0.00 0.00 4.18
2735 2831 2.946329 ACACACAAAAAGCACACCGATA 59.054 40.909 0.00 0.00 0.00 2.92
2736 2832 3.378742 ACACACAAAAAGCACACCGATAA 59.621 39.130 0.00 0.00 0.00 1.75
2737 2833 4.142359 ACACACAAAAAGCACACCGATAAA 60.142 37.500 0.00 0.00 0.00 1.40
2738 2834 4.440758 CACACAAAAAGCACACCGATAAAG 59.559 41.667 0.00 0.00 0.00 1.85
2739 2835 3.425193 CACAAAAAGCACACCGATAAAGC 59.575 43.478 0.00 0.00 0.00 3.51
2740 2836 3.317993 ACAAAAAGCACACCGATAAAGCT 59.682 39.130 0.00 0.00 37.08 3.74
2741 2837 4.517453 ACAAAAAGCACACCGATAAAGCTA 59.483 37.500 0.00 0.00 34.66 3.32
2742 2838 5.183140 ACAAAAAGCACACCGATAAAGCTAT 59.817 36.000 0.00 0.00 34.66 2.97
2743 2839 4.882671 AAAGCACACCGATAAAGCTATG 57.117 40.909 0.00 0.00 34.66 2.23
2744 2840 2.213499 AGCACACCGATAAAGCTATGC 58.787 47.619 0.00 0.00 33.06 3.14
2745 2841 1.939934 GCACACCGATAAAGCTATGCA 59.060 47.619 0.00 0.00 0.00 3.96
2746 2842 2.286418 GCACACCGATAAAGCTATGCAC 60.286 50.000 0.00 0.00 0.00 4.57
2747 2843 2.935849 CACACCGATAAAGCTATGCACA 59.064 45.455 0.00 0.00 0.00 4.57
2748 2844 3.001634 CACACCGATAAAGCTATGCACAG 59.998 47.826 0.00 0.00 0.00 3.66
2749 2845 2.545526 CACCGATAAAGCTATGCACAGG 59.454 50.000 0.00 0.00 0.00 4.00
2750 2846 1.532868 CCGATAAAGCTATGCACAGGC 59.467 52.381 0.00 0.00 41.68 4.85
2751 2847 1.193203 CGATAAAGCTATGCACAGGCG 59.807 52.381 0.00 0.00 45.35 5.52
2752 2848 2.483876 GATAAAGCTATGCACAGGCGA 58.516 47.619 0.00 0.00 45.35 5.54
2753 2849 2.620251 TAAAGCTATGCACAGGCGAT 57.380 45.000 0.00 0.00 45.35 4.58
2754 2850 2.620251 AAAGCTATGCACAGGCGATA 57.380 45.000 0.00 0.00 45.35 2.92
2755 2851 2.620251 AAGCTATGCACAGGCGATAA 57.380 45.000 0.00 0.00 45.35 1.75
2756 2852 2.620251 AGCTATGCACAGGCGATAAA 57.380 45.000 0.00 0.00 45.35 1.40
2757 2853 2.917933 AGCTATGCACAGGCGATAAAA 58.082 42.857 0.00 0.00 45.35 1.52
2758 2854 3.278574 AGCTATGCACAGGCGATAAAAA 58.721 40.909 0.00 0.00 45.35 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 2.175069 TCACTAACTCGGGCTCTATCCT 59.825 50.000 0.00 0.00 0.00 3.24
102 103 5.297029 CAGACTCCTACACGAATATGTCTCA 59.703 44.000 0.00 0.00 33.85 3.27
154 155 9.974980 GTCCTGTTAAAAACCAAATCATTTCTA 57.025 29.630 0.00 0.00 0.00 2.10
222 223 1.448985 CAACCACGGACGGATCAAAT 58.551 50.000 0.00 0.00 0.00 2.32
223 224 1.231958 GCAACCACGGACGGATCAAA 61.232 55.000 0.00 0.00 0.00 2.69
233 234 0.389948 GGAGTGAGTAGCAACCACGG 60.390 60.000 0.00 0.00 34.13 4.94
331 332 7.232737 TGTCTATCCTATTACATGACCGTCATT 59.767 37.037 11.49 6.40 34.28 2.57
415 417 5.041287 GCCAAAAAGGACTAGAAACACAAC 58.959 41.667 0.00 0.00 41.22 3.32
428 432 2.575532 CTCACACAGAGCCAAAAAGGA 58.424 47.619 0.00 0.00 40.02 3.36
474 478 3.288092 AGGTTCCAACAAGGTCTCAAAC 58.712 45.455 0.00 0.00 39.02 2.93
622 632 9.371136 GACGGCTTATGATTCTTGATTGATATA 57.629 33.333 0.00 0.00 0.00 0.86
625 635 5.178252 CGACGGCTTATGATTCTTGATTGAT 59.822 40.000 0.00 0.00 0.00 2.57
641 651 2.032071 CCCAGTTTCCGACGGCTT 59.968 61.111 9.66 0.00 0.00 4.35
644 654 1.670083 GGTTCCCAGTTTCCGACGG 60.670 63.158 7.84 7.84 0.00 4.79
648 658 2.359478 CCCGGTTCCCAGTTTCCG 60.359 66.667 0.00 0.00 42.22 4.30
650 660 1.173913 CATTCCCGGTTCCCAGTTTC 58.826 55.000 0.00 0.00 0.00 2.78
656 666 1.466856 GTTAACCATTCCCGGTTCCC 58.533 55.000 0.00 0.00 46.60 3.97
657 667 1.272037 TGGTTAACCATTCCCGGTTCC 60.272 52.381 23.69 0.00 46.60 3.62
658 668 2.089201 CTGGTTAACCATTCCCGGTTC 58.911 52.381 27.24 0.00 46.60 3.62
660 670 1.069775 ACTGGTTAACCATTCCCGGT 58.930 50.000 27.24 17.20 46.46 5.28
661 671 1.003812 TCACTGGTTAACCATTCCCGG 59.996 52.381 27.24 16.55 46.46 5.73
662 672 2.081462 GTCACTGGTTAACCATTCCCG 58.919 52.381 27.24 17.25 46.46 5.14
691 701 2.639751 CGTAATTAGGCAGCAAATCGC 58.360 47.619 0.00 0.00 42.91 4.58
692 702 2.287915 AGCGTAATTAGGCAGCAAATCG 59.712 45.455 26.86 6.66 39.38 3.34
693 703 3.312421 TCAGCGTAATTAGGCAGCAAATC 59.688 43.478 26.86 0.99 39.38 2.17
694 704 3.278574 TCAGCGTAATTAGGCAGCAAAT 58.721 40.909 26.86 7.12 39.38 2.32
695 705 2.705730 TCAGCGTAATTAGGCAGCAAA 58.294 42.857 26.86 5.80 39.38 3.68
696 706 2.394930 TCAGCGTAATTAGGCAGCAA 57.605 45.000 26.86 10.21 39.38 3.91
697 707 2.394930 TTCAGCGTAATTAGGCAGCA 57.605 45.000 26.86 11.08 39.38 4.41
698 708 2.936498 TCTTTCAGCGTAATTAGGCAGC 59.064 45.455 26.86 12.04 39.38 5.25
708 718 2.286833 GCCGCATTAATCTTTCAGCGTA 59.713 45.455 12.70 0.00 43.24 4.42
712 722 2.539547 CCGTGCCGCATTAATCTTTCAG 60.540 50.000 0.00 0.00 0.00 3.02
713 723 1.400142 CCGTGCCGCATTAATCTTTCA 59.600 47.619 0.00 0.00 0.00 2.69
714 724 1.400494 ACCGTGCCGCATTAATCTTTC 59.600 47.619 0.00 0.00 0.00 2.62
715 725 1.132262 CACCGTGCCGCATTAATCTTT 59.868 47.619 0.00 0.00 0.00 2.52
716 726 0.732571 CACCGTGCCGCATTAATCTT 59.267 50.000 0.00 0.00 0.00 2.40
717 727 1.714899 GCACCGTGCCGCATTAATCT 61.715 55.000 12.80 0.00 37.42 2.40
752 762 3.057245 GGTCTTTTCCTTCATCAAGTGGC 60.057 47.826 0.00 0.00 0.00 5.01
758 768 2.716424 ACCTGGGTCTTTTCCTTCATCA 59.284 45.455 0.00 0.00 0.00 3.07
765 775 2.604912 ATTGGACCTGGGTCTTTTCC 57.395 50.000 17.82 3.95 44.04 3.13
766 776 3.265995 TCCTATTGGACCTGGGTCTTTTC 59.734 47.826 17.82 3.74 44.04 2.29
767 777 3.265489 TCCTATTGGACCTGGGTCTTTT 58.735 45.455 17.82 6.85 44.04 2.27
768 778 2.929301 TCCTATTGGACCTGGGTCTTT 58.071 47.619 17.82 7.15 44.04 2.52
769 779 2.661176 TCCTATTGGACCTGGGTCTT 57.339 50.000 17.82 7.45 44.04 3.01
770 780 2.897823 ATCCTATTGGACCTGGGTCT 57.102 50.000 17.82 2.97 46.51 3.85
771 781 3.953542 AAATCCTATTGGACCTGGGTC 57.046 47.619 11.03 11.03 46.51 4.46
772 782 3.858638 AGAAAATCCTATTGGACCTGGGT 59.141 43.478 0.00 0.00 46.51 4.51
773 783 4.526438 AGAAAATCCTATTGGACCTGGG 57.474 45.455 0.00 0.00 46.51 4.45
774 784 4.889995 GGAAGAAAATCCTATTGGACCTGG 59.110 45.833 0.00 0.00 46.51 4.45
775 785 5.509498 TGGAAGAAAATCCTATTGGACCTG 58.491 41.667 0.00 0.00 46.51 4.00
776 786 5.796502 TGGAAGAAAATCCTATTGGACCT 57.203 39.130 0.00 0.00 46.51 3.85
777 787 6.129179 TGATGGAAGAAAATCCTATTGGACC 58.871 40.000 0.00 0.00 46.51 4.46
778 788 6.264067 CCTGATGGAAGAAAATCCTATTGGAC 59.736 42.308 0.00 0.00 39.60 4.02
779 789 6.367983 CCTGATGGAAGAAAATCCTATTGGA 58.632 40.000 0.00 0.00 40.56 3.53
780 790 5.537674 CCCTGATGGAAGAAAATCCTATTGG 59.462 44.000 0.00 0.00 40.35 3.16
781 791 6.367983 TCCCTGATGGAAGAAAATCCTATTG 58.632 40.000 0.00 0.00 41.40 1.90
782 792 6.596869 TCCCTGATGGAAGAAAATCCTATT 57.403 37.500 0.00 0.00 41.40 1.73
795 805 8.058235 TCAATATAATGTTGTTTCCCTGATGGA 58.942 33.333 0.00 0.00 43.18 3.41
796 806 8.236585 TCAATATAATGTTGTTTCCCTGATGG 57.763 34.615 0.00 0.00 0.00 3.51
848 858 9.597170 TCAATGTTTTTCTTCATCACAAATCAA 57.403 25.926 0.00 0.00 0.00 2.57
849 859 9.767228 ATCAATGTTTTTCTTCATCACAAATCA 57.233 25.926 0.00 0.00 0.00 2.57
853 863 9.381033 ACAAATCAATGTTTTTCTTCATCACAA 57.619 25.926 0.00 0.00 0.00 3.33
854 864 8.819015 CACAAATCAATGTTTTTCTTCATCACA 58.181 29.630 0.00 0.00 0.00 3.58
855 865 8.277713 CCACAAATCAATGTTTTTCTTCATCAC 58.722 33.333 0.00 0.00 0.00 3.06
856 866 8.202811 TCCACAAATCAATGTTTTTCTTCATCA 58.797 29.630 0.00 0.00 0.00 3.07
857 867 8.592105 TCCACAAATCAATGTTTTTCTTCATC 57.408 30.769 0.00 0.00 0.00 2.92
858 868 8.206189 ACTCCACAAATCAATGTTTTTCTTCAT 58.794 29.630 0.00 0.00 0.00 2.57
859 869 7.555087 ACTCCACAAATCAATGTTTTTCTTCA 58.445 30.769 0.00 0.00 0.00 3.02
860 870 7.169813 GGACTCCACAAATCAATGTTTTTCTTC 59.830 37.037 0.00 0.00 0.00 2.87
861 871 6.986231 GGACTCCACAAATCAATGTTTTTCTT 59.014 34.615 0.00 0.00 0.00 2.52
862 872 6.098124 TGGACTCCACAAATCAATGTTTTTCT 59.902 34.615 0.00 0.00 0.00 2.52
863 873 6.279882 TGGACTCCACAAATCAATGTTTTTC 58.720 36.000 0.00 0.00 0.00 2.29
916 926 1.615107 GAAGGAGCACGCACGTGTAC 61.615 60.000 22.66 16.27 46.90 2.90
917 927 1.372499 GAAGGAGCACGCACGTGTA 60.372 57.895 22.66 0.00 46.90 2.90
918 928 2.661866 GAAGGAGCACGCACGTGT 60.662 61.111 22.66 10.82 46.90 4.49
939 949 1.915769 GGAGGGATCGATCTGGGGG 60.916 68.421 23.96 0.00 0.00 5.40
945 980 2.242926 TGTGAGATGGAGGGATCGATC 58.757 52.381 17.36 17.36 0.00 3.69
958 993 0.747255 CCGATCCGGTCTTGTGAGAT 59.253 55.000 0.00 0.00 42.73 2.75
1113 1151 3.648982 CGCCAGCGTTTGCAGACA 61.649 61.111 8.25 0.00 46.23 3.41
1320 1364 2.045926 ATGAGGACAAGGCCGTGC 60.046 61.111 19.37 11.24 0.00 5.34
1402 1451 2.649531 TTGAACTCGGGTGGAATTGT 57.350 45.000 0.00 0.00 0.00 2.71
1422 1471 4.508128 CCGTGGACGTAGCCGCAT 62.508 66.667 7.52 0.00 38.35 4.73
1534 1584 0.460987 GAGGCAAGAGGTCGACCATG 60.461 60.000 35.00 28.23 38.89 3.66
1598 1648 9.967346 CAAAACTATCTCGATATTCAACCTCTA 57.033 33.333 0.00 0.00 0.00 2.43
1606 1656 7.954788 AAGAGCCAAAACTATCTCGATATTC 57.045 36.000 0.00 0.00 0.00 1.75
1618 1668 8.333226 AGGGTACTAATATAAGAGCCAAAACT 57.667 34.615 0.00 0.00 0.00 2.66
1698 1753 5.334724 AGCTATGCCTTTCCAAATCAAAG 57.665 39.130 0.00 0.00 0.00 2.77
1761 1816 1.443407 CCGGATGATCTGTCGGCTT 59.557 57.895 0.00 0.00 35.95 4.35
1766 1821 0.033228 CTCTGCCCGGATGATCTGTC 59.967 60.000 0.73 0.00 0.00 3.51
1767 1822 1.406065 CCTCTGCCCGGATGATCTGT 61.406 60.000 0.73 0.00 0.00 3.41
1778 1833 2.124403 CTGTGCCATCCTCTGCCC 60.124 66.667 0.00 0.00 0.00 5.36
1812 1867 3.674528 ATGTTATGATCAGGGCGAGAG 57.325 47.619 0.09 0.00 0.00 3.20
1817 1872 5.981315 CACATTTCAATGTTATGATCAGGGC 59.019 40.000 0.09 0.00 46.95 5.19
1820 1875 6.566141 TGCCACATTTCAATGTTATGATCAG 58.434 36.000 0.09 0.00 46.95 2.90
1916 1971 1.945394 CTTCAATCCGAGGAGGCAATG 59.055 52.381 0.00 0.00 40.77 2.82
1917 1972 1.133976 CCTTCAATCCGAGGAGGCAAT 60.134 52.381 0.00 0.00 40.77 3.56
1920 1975 0.105778 CTCCTTCAATCCGAGGAGGC 59.894 60.000 10.80 0.00 43.00 4.70
1987 2045 7.442969 ACCGTCCTTCGCATATAAAAATATTCA 59.557 33.333 0.00 0.00 38.35 2.57
2034 2092 5.105392 ACAAAGTTTCCTTGATTGCAGTGAA 60.105 36.000 0.00 0.00 0.00 3.18
2037 2095 4.402155 TCACAAAGTTTCCTTGATTGCAGT 59.598 37.500 0.00 0.00 0.00 4.40
2068 2126 5.580691 TGAAAGAATGACAGGCACTAATACG 59.419 40.000 0.00 0.00 36.02 3.06
2077 2138 5.240403 AGAAACTCTTGAAAGAATGACAGGC 59.760 40.000 0.00 0.00 34.03 4.85
2105 2166 9.071276 GTAACACCTACAGTATATTACCTAGCA 57.929 37.037 0.00 0.00 0.00 3.49
2157 2238 8.037166 TCAATCTAGCATATGTATTCGAGCATT 58.963 33.333 4.29 0.00 0.00 3.56
2170 2251 8.286191 TGACTATGATCGTCAATCTAGCATAT 57.714 34.615 0.00 0.00 38.36 1.78
2181 2262 8.221965 ACTAAACAGTATGACTATGATCGTCA 57.778 34.615 2.13 2.13 44.59 4.35
2264 2345 8.267183 ACAATGTACTGATGATGACATTCCTAA 58.733 33.333 0.00 0.00 39.81 2.69
2293 2375 6.459435 CCACACTGAATGATAACACACACAAA 60.459 38.462 0.00 0.00 0.00 2.83
2296 2378 4.613622 GCCACACTGAATGATAACACACAC 60.614 45.833 0.00 0.00 0.00 3.82
2297 2379 3.501828 GCCACACTGAATGATAACACACA 59.498 43.478 0.00 0.00 0.00 3.72
2298 2380 3.753272 AGCCACACTGAATGATAACACAC 59.247 43.478 0.00 0.00 0.00 3.82
2306 2389 2.101415 CGGAGATAGCCACACTGAATGA 59.899 50.000 0.00 0.00 0.00 2.57
2310 2393 1.103803 GACGGAGATAGCCACACTGA 58.896 55.000 0.00 0.00 0.00 3.41
2311 2394 0.103208 GGACGGAGATAGCCACACTG 59.897 60.000 0.00 0.00 0.00 3.66
2313 2396 0.824759 AAGGACGGAGATAGCCACAC 59.175 55.000 0.00 0.00 0.00 3.82
2319 2402 1.309950 TCGCTCAAGGACGGAGATAG 58.690 55.000 0.00 0.00 34.24 2.08
2327 2410 1.464997 GGTTTGTCATCGCTCAAGGAC 59.535 52.381 0.00 0.00 0.00 3.85
2336 2419 7.970061 AGTCATTTCATATTTGGTTTGTCATCG 59.030 33.333 0.00 0.00 0.00 3.84
2462 2545 7.523293 TTATCAATCAGCCTTGTTTCTTTCA 57.477 32.000 0.00 0.00 0.00 2.69
2523 2619 6.933514 TCACTACCATCAATCAGGCATATA 57.066 37.500 0.00 0.00 0.00 0.86
2528 2624 5.643379 TTTTTCACTACCATCAATCAGGC 57.357 39.130 0.00 0.00 0.00 4.85
2549 2645 8.474831 AGTTGGTTTAAGCTTTGTATCAAGTTT 58.525 29.630 3.20 0.00 0.00 2.66
2550 2646 8.007405 AGTTGGTTTAAGCTTTGTATCAAGTT 57.993 30.769 3.20 0.00 0.00 2.66
2551 2647 7.284489 TGAGTTGGTTTAAGCTTTGTATCAAGT 59.716 33.333 3.20 6.25 0.00 3.16
2552 2648 7.648142 TGAGTTGGTTTAAGCTTTGTATCAAG 58.352 34.615 3.20 0.00 0.00 3.02
2553 2649 7.575414 TGAGTTGGTTTAAGCTTTGTATCAA 57.425 32.000 3.20 0.32 0.00 2.57
2554 2650 7.284489 AGTTGAGTTGGTTTAAGCTTTGTATCA 59.716 33.333 3.20 0.00 0.00 2.15
2555 2651 7.591426 CAGTTGAGTTGGTTTAAGCTTTGTATC 59.409 37.037 3.20 0.00 0.00 2.24
2557 2653 6.183360 CCAGTTGAGTTGGTTTAAGCTTTGTA 60.183 38.462 3.20 0.00 0.00 2.41
2558 2654 5.394115 CCAGTTGAGTTGGTTTAAGCTTTGT 60.394 40.000 3.20 0.00 0.00 2.83
2559 2655 5.043248 CCAGTTGAGTTGGTTTAAGCTTTG 58.957 41.667 3.20 0.00 0.00 2.77
2560 2656 4.953579 TCCAGTTGAGTTGGTTTAAGCTTT 59.046 37.500 3.20 0.00 37.02 3.51
2561 2657 4.532834 TCCAGTTGAGTTGGTTTAAGCTT 58.467 39.130 3.48 3.48 37.02 3.74
2562 2658 4.164843 TCCAGTTGAGTTGGTTTAAGCT 57.835 40.909 0.00 0.00 37.02 3.74
2563 2659 4.798574 CATCCAGTTGAGTTGGTTTAAGC 58.201 43.478 0.00 0.00 37.02 3.09
2564 2660 4.278170 TGCATCCAGTTGAGTTGGTTTAAG 59.722 41.667 0.00 0.00 37.02 1.85
2565 2661 4.211125 TGCATCCAGTTGAGTTGGTTTAA 58.789 39.130 0.00 0.00 37.02 1.52
2566 2662 3.826524 TGCATCCAGTTGAGTTGGTTTA 58.173 40.909 0.00 0.00 37.02 2.01
2569 2665 2.165167 CATGCATCCAGTTGAGTTGGT 58.835 47.619 0.00 0.00 37.02 3.67
2591 2687 4.888239 TCCACCCTTTGTCGAAAAATGTAA 59.112 37.500 0.15 0.00 0.00 2.41
2593 2689 3.292460 TCCACCCTTTGTCGAAAAATGT 58.708 40.909 0.15 0.00 0.00 2.71
2597 2693 6.658188 ATAAAATCCACCCTTTGTCGAAAA 57.342 33.333 0.00 0.00 0.00 2.29
2600 2696 4.461081 CCAATAAAATCCACCCTTTGTCGA 59.539 41.667 0.00 0.00 0.00 4.20
2601 2697 4.743493 CCAATAAAATCCACCCTTTGTCG 58.257 43.478 0.00 0.00 0.00 4.35
2602 2698 4.222810 AGCCAATAAAATCCACCCTTTGTC 59.777 41.667 0.00 0.00 0.00 3.18
2603 2699 4.167319 AGCCAATAAAATCCACCCTTTGT 58.833 39.130 0.00 0.00 0.00 2.83
2604 2700 4.222588 TGAGCCAATAAAATCCACCCTTTG 59.777 41.667 0.00 0.00 0.00 2.77
2605 2701 4.424842 TGAGCCAATAAAATCCACCCTTT 58.575 39.130 0.00 0.00 0.00 3.11
2606 2702 4.059773 TGAGCCAATAAAATCCACCCTT 57.940 40.909 0.00 0.00 0.00 3.95
2607 2703 3.756082 TGAGCCAATAAAATCCACCCT 57.244 42.857 0.00 0.00 0.00 4.34
2608 2704 4.817318 TTTGAGCCAATAAAATCCACCC 57.183 40.909 0.00 0.00 0.00 4.61
2609 2705 5.585844 CCATTTTGAGCCAATAAAATCCACC 59.414 40.000 0.00 0.00 35.07 4.61
2610 2706 6.405538 TCCATTTTGAGCCAATAAAATCCAC 58.594 36.000 0.00 0.00 35.07 4.02
2611 2707 6.617782 TCCATTTTGAGCCAATAAAATCCA 57.382 33.333 0.00 0.00 35.07 3.41
2624 2720 3.790091 TCTCTCGATGCTCCATTTTGAG 58.210 45.455 0.00 0.00 35.40 3.02
2625 2721 3.893326 TCTCTCGATGCTCCATTTTGA 57.107 42.857 0.00 0.00 0.00 2.69
2626 2722 5.525012 TGTATTCTCTCGATGCTCCATTTTG 59.475 40.000 0.00 0.00 0.00 2.44
2627 2723 5.674525 TGTATTCTCTCGATGCTCCATTTT 58.325 37.500 0.00 0.00 0.00 1.82
2628 2724 5.282055 TGTATTCTCTCGATGCTCCATTT 57.718 39.130 0.00 0.00 0.00 2.32
2629 2725 4.944619 TGTATTCTCTCGATGCTCCATT 57.055 40.909 0.00 0.00 0.00 3.16
2630 2726 4.944619 TTGTATTCTCTCGATGCTCCAT 57.055 40.909 0.00 0.00 0.00 3.41
2631 2727 4.081697 TGTTTGTATTCTCTCGATGCTCCA 60.082 41.667 0.00 0.00 0.00 3.86
2632 2728 4.433615 TGTTTGTATTCTCTCGATGCTCC 58.566 43.478 0.00 0.00 0.00 4.70
2633 2729 7.700322 TTATGTTTGTATTCTCTCGATGCTC 57.300 36.000 0.00 0.00 0.00 4.26
2634 2730 7.928167 TCATTATGTTTGTATTCTCTCGATGCT 59.072 33.333 0.00 0.00 0.00 3.79
2635 2731 8.076714 TCATTATGTTTGTATTCTCTCGATGC 57.923 34.615 0.00 0.00 0.00 3.91
2636 2732 8.219769 GCTCATTATGTTTGTATTCTCTCGATG 58.780 37.037 0.00 0.00 0.00 3.84
2637 2733 7.928167 TGCTCATTATGTTTGTATTCTCTCGAT 59.072 33.333 0.00 0.00 0.00 3.59
2638 2734 7.264947 TGCTCATTATGTTTGTATTCTCTCGA 58.735 34.615 0.00 0.00 0.00 4.04
2639 2735 7.468922 TGCTCATTATGTTTGTATTCTCTCG 57.531 36.000 0.00 0.00 0.00 4.04
2645 2741 9.806448 TGGGTATATGCTCATTATGTTTGTATT 57.194 29.630 0.00 0.00 0.00 1.89
2646 2742 9.453572 CTGGGTATATGCTCATTATGTTTGTAT 57.546 33.333 0.00 0.00 0.00 2.29
2647 2743 7.390440 GCTGGGTATATGCTCATTATGTTTGTA 59.610 37.037 0.00 0.00 0.00 2.41
2648 2744 6.207417 GCTGGGTATATGCTCATTATGTTTGT 59.793 38.462 0.00 0.00 0.00 2.83
2649 2745 6.349611 GGCTGGGTATATGCTCATTATGTTTG 60.350 42.308 0.00 0.00 0.00 2.93
2650 2746 5.711976 GGCTGGGTATATGCTCATTATGTTT 59.288 40.000 0.00 0.00 0.00 2.83
2651 2747 5.014544 AGGCTGGGTATATGCTCATTATGTT 59.985 40.000 0.00 0.00 0.00 2.71
2652 2748 4.537688 AGGCTGGGTATATGCTCATTATGT 59.462 41.667 0.00 0.00 0.00 2.29
2653 2749 5.104610 AGAGGCTGGGTATATGCTCATTATG 60.105 44.000 0.00 0.00 0.00 1.90
2654 2750 5.035556 AGAGGCTGGGTATATGCTCATTAT 58.964 41.667 0.00 0.00 0.00 1.28
2655 2751 4.223700 CAGAGGCTGGGTATATGCTCATTA 59.776 45.833 0.00 0.00 0.00 1.90
2656 2752 3.008813 CAGAGGCTGGGTATATGCTCATT 59.991 47.826 0.00 0.00 0.00 2.57
2657 2753 2.570752 CAGAGGCTGGGTATATGCTCAT 59.429 50.000 0.00 0.00 0.00 2.90
2658 2754 1.973515 CAGAGGCTGGGTATATGCTCA 59.026 52.381 0.00 0.00 0.00 4.26
2659 2755 1.338579 GCAGAGGCTGGGTATATGCTC 60.339 57.143 0.00 0.00 36.96 4.26
2660 2756 0.689623 GCAGAGGCTGGGTATATGCT 59.310 55.000 0.00 0.00 36.96 3.79
2661 2757 0.397941 TGCAGAGGCTGGGTATATGC 59.602 55.000 0.00 0.00 41.91 3.14
2662 2758 4.019860 AGTTATGCAGAGGCTGGGTATATG 60.020 45.833 0.00 0.00 41.91 1.78
2663 2759 4.171234 AGTTATGCAGAGGCTGGGTATAT 58.829 43.478 0.00 0.00 41.91 0.86
2664 2760 3.587498 AGTTATGCAGAGGCTGGGTATA 58.413 45.455 0.00 0.00 41.91 1.47
2665 2761 2.412591 AGTTATGCAGAGGCTGGGTAT 58.587 47.619 0.00 0.00 41.91 2.73
2666 2762 1.879575 AGTTATGCAGAGGCTGGGTA 58.120 50.000 0.00 0.00 41.91 3.69
2667 2763 1.879575 TAGTTATGCAGAGGCTGGGT 58.120 50.000 0.00 0.00 41.91 4.51
2668 2764 2.435805 TCTTAGTTATGCAGAGGCTGGG 59.564 50.000 0.00 0.00 41.91 4.45
2669 2765 3.827008 TCTTAGTTATGCAGAGGCTGG 57.173 47.619 0.00 0.00 41.91 4.85
2679 2775 3.940852 TGGCTGTGTGCATCTTAGTTATG 59.059 43.478 0.00 0.00 45.15 1.90
2680 2776 4.220693 TGGCTGTGTGCATCTTAGTTAT 57.779 40.909 0.00 0.00 45.15 1.89
2681 2777 3.694043 TGGCTGTGTGCATCTTAGTTA 57.306 42.857 0.00 0.00 45.15 2.24
2682 2778 2.554032 GTTGGCTGTGTGCATCTTAGTT 59.446 45.455 0.00 0.00 45.15 2.24
2683 2779 2.154462 GTTGGCTGTGTGCATCTTAGT 58.846 47.619 0.00 0.00 45.15 2.24
2684 2780 2.153645 TGTTGGCTGTGTGCATCTTAG 58.846 47.619 0.00 0.00 45.15 2.18
2685 2781 2.268762 TGTTGGCTGTGTGCATCTTA 57.731 45.000 0.00 0.00 45.15 2.10
2686 2782 1.624336 ATGTTGGCTGTGTGCATCTT 58.376 45.000 0.00 0.00 45.15 2.40
2687 2783 1.624336 AATGTTGGCTGTGTGCATCT 58.376 45.000 0.00 0.00 45.15 2.90
2688 2784 3.244976 GTTAATGTTGGCTGTGTGCATC 58.755 45.455 0.00 0.00 45.15 3.91
2689 2785 2.351641 CGTTAATGTTGGCTGTGTGCAT 60.352 45.455 0.00 0.00 45.15 3.96
2690 2786 1.001924 CGTTAATGTTGGCTGTGTGCA 60.002 47.619 0.00 0.00 45.15 4.57
2691 2787 1.685302 CGTTAATGTTGGCTGTGTGC 58.315 50.000 0.00 0.00 41.94 4.57
2692 2788 1.001924 TGCGTTAATGTTGGCTGTGTG 60.002 47.619 0.00 0.00 0.00 3.82
2693 2789 1.001815 GTGCGTTAATGTTGGCTGTGT 60.002 47.619 0.00 0.00 0.00 3.72
2694 2790 1.001924 TGTGCGTTAATGTTGGCTGTG 60.002 47.619 0.00 0.00 0.00 3.66
2695 2791 1.001815 GTGTGCGTTAATGTTGGCTGT 60.002 47.619 0.00 0.00 0.00 4.40
2696 2792 1.001924 TGTGTGCGTTAATGTTGGCTG 60.002 47.619 0.00 0.00 0.00 4.85
2697 2793 1.001815 GTGTGTGCGTTAATGTTGGCT 60.002 47.619 0.00 0.00 0.00 4.75
2698 2794 1.268794 TGTGTGTGCGTTAATGTTGGC 60.269 47.619 0.00 0.00 0.00 4.52
2699 2795 2.223363 TGTGTGTGTGCGTTAATGTTGG 60.223 45.455 0.00 0.00 0.00 3.77
2700 2796 3.058292 TGTGTGTGTGCGTTAATGTTG 57.942 42.857 0.00 0.00 0.00 3.33
2701 2797 3.766676 TTGTGTGTGTGCGTTAATGTT 57.233 38.095 0.00 0.00 0.00 2.71
2702 2798 3.766676 TTTGTGTGTGTGCGTTAATGT 57.233 38.095 0.00 0.00 0.00 2.71
2703 2799 4.547966 GCTTTTTGTGTGTGTGCGTTAATG 60.548 41.667 0.00 0.00 0.00 1.90
2704 2800 3.549873 GCTTTTTGTGTGTGTGCGTTAAT 59.450 39.130 0.00 0.00 0.00 1.40
2705 2801 2.917971 GCTTTTTGTGTGTGTGCGTTAA 59.082 40.909 0.00 0.00 0.00 2.01
2706 2802 2.095212 TGCTTTTTGTGTGTGTGCGTTA 60.095 40.909 0.00 0.00 0.00 3.18
2707 2803 1.336332 TGCTTTTTGTGTGTGTGCGTT 60.336 42.857 0.00 0.00 0.00 4.84
2708 2804 0.242286 TGCTTTTTGTGTGTGTGCGT 59.758 45.000 0.00 0.00 0.00 5.24
2709 2805 0.639756 GTGCTTTTTGTGTGTGTGCG 59.360 50.000 0.00 0.00 0.00 5.34
2710 2806 1.389784 GTGTGCTTTTTGTGTGTGTGC 59.610 47.619 0.00 0.00 0.00 4.57
2711 2807 1.991965 GGTGTGCTTTTTGTGTGTGTG 59.008 47.619 0.00 0.00 0.00 3.82
2712 2808 1.402194 CGGTGTGCTTTTTGTGTGTGT 60.402 47.619 0.00 0.00 0.00 3.72
2713 2809 1.135546 TCGGTGTGCTTTTTGTGTGTG 60.136 47.619 0.00 0.00 0.00 3.82
2714 2810 1.169577 TCGGTGTGCTTTTTGTGTGT 58.830 45.000 0.00 0.00 0.00 3.72
2715 2811 2.490328 ATCGGTGTGCTTTTTGTGTG 57.510 45.000 0.00 0.00 0.00 3.82
2716 2812 4.606961 CTTTATCGGTGTGCTTTTTGTGT 58.393 39.130 0.00 0.00 0.00 3.72
2717 2813 3.425193 GCTTTATCGGTGTGCTTTTTGTG 59.575 43.478 0.00 0.00 0.00 3.33
2718 2814 3.317993 AGCTTTATCGGTGTGCTTTTTGT 59.682 39.130 0.00 0.00 0.00 2.83
2719 2815 3.900941 AGCTTTATCGGTGTGCTTTTTG 58.099 40.909 0.00 0.00 0.00 2.44
2720 2816 5.640732 CATAGCTTTATCGGTGTGCTTTTT 58.359 37.500 0.00 0.00 35.47 1.94
2721 2817 4.438744 GCATAGCTTTATCGGTGTGCTTTT 60.439 41.667 0.00 0.00 43.31 2.27
2722 2818 3.065371 GCATAGCTTTATCGGTGTGCTTT 59.935 43.478 0.00 0.00 43.31 3.51
2723 2819 2.614057 GCATAGCTTTATCGGTGTGCTT 59.386 45.455 0.00 0.00 43.31 3.91
2724 2820 2.213499 GCATAGCTTTATCGGTGTGCT 58.787 47.619 0.00 0.00 43.31 4.40
2725 2821 1.939934 TGCATAGCTTTATCGGTGTGC 59.060 47.619 0.00 5.05 45.70 4.57
2726 2822 2.935849 TGTGCATAGCTTTATCGGTGTG 59.064 45.455 0.00 0.00 0.00 3.82
2727 2823 3.198068 CTGTGCATAGCTTTATCGGTGT 58.802 45.455 0.00 0.00 0.00 4.16
2728 2824 2.545526 CCTGTGCATAGCTTTATCGGTG 59.454 50.000 4.68 0.00 0.00 4.94
2729 2825 2.838736 CCTGTGCATAGCTTTATCGGT 58.161 47.619 4.68 0.00 0.00 4.69
2730 2826 1.532868 GCCTGTGCATAGCTTTATCGG 59.467 52.381 4.68 0.00 37.47 4.18
2731 2827 1.193203 CGCCTGTGCATAGCTTTATCG 59.807 52.381 4.68 0.00 37.32 2.92
2732 2828 2.483876 TCGCCTGTGCATAGCTTTATC 58.516 47.619 4.68 0.00 37.32 1.75
2733 2829 2.620251 TCGCCTGTGCATAGCTTTAT 57.380 45.000 4.68 0.00 37.32 1.40
2734 2830 2.620251 ATCGCCTGTGCATAGCTTTA 57.380 45.000 4.68 0.00 37.32 1.85
2735 2831 2.620251 TATCGCCTGTGCATAGCTTT 57.380 45.000 4.68 0.00 37.32 3.51
2736 2832 2.620251 TTATCGCCTGTGCATAGCTT 57.380 45.000 4.68 0.00 37.32 3.74
2737 2833 2.620251 TTTATCGCCTGTGCATAGCT 57.380 45.000 4.68 0.00 37.32 3.32
2738 2834 3.691049 TTTTTATCGCCTGTGCATAGC 57.309 42.857 4.68 0.00 37.32 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.