Multiple sequence alignment - TraesCS6A01G306400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G306400 chr6A 100.000 4906 0 0 1 4906 540052350 540047445 0.000000e+00 9060.0
1 TraesCS6A01G306400 chr6A 92.718 206 12 2 4309 4511 540047733 540047528 1.340000e-75 294.0
2 TraesCS6A01G306400 chr6A 92.718 206 12 2 4618 4823 540048042 540047840 1.340000e-75 294.0
3 TraesCS6A01G306400 chr6A 86.611 239 28 4 393 631 540126797 540126563 1.350000e-65 261.0
4 TraesCS6A01G306400 chr6A 90.435 115 9 1 1 113 564510570 564510456 3.060000e-32 150.0
5 TraesCS6A01G306400 chr6B 94.455 2759 92 30 1603 4321 588908767 588906030 0.000000e+00 4191.0
6 TraesCS6A01G306400 chr6B 94.788 518 23 4 4392 4906 588836746 588836230 0.000000e+00 804.0
7 TraesCS6A01G306400 chr6B 90.857 525 15 6 681 1187 588909705 588909196 0.000000e+00 673.0
8 TraesCS6A01G306400 chr6B 86.527 334 17 10 1186 1517 588909150 588908843 4.700000e-90 342.0
9 TraesCS6A01G306400 chr6B 92.195 205 13 2 4309 4510 588836518 588836314 2.230000e-73 287.0
10 TraesCS6A01G306400 chr6B 86.100 259 11 3 392 648 588909916 588909681 6.300000e-64 255.0
11 TraesCS6A01G306400 chr6B 95.536 112 4 1 4713 4823 588836737 588836626 1.400000e-40 178.0
12 TraesCS6A01G306400 chr6B 83.432 169 14 8 4511 4677 588906118 588905962 1.420000e-30 145.0
13 TraesCS6A01G306400 chr6B 89.011 91 6 4 4232 4321 588836626 588836539 5.190000e-20 110.0
14 TraesCS6A01G306400 chr6D 91.715 2595 81 40 1186 3720 393659639 393657119 0.000000e+00 3478.0
15 TraesCS6A01G306400 chr6D 91.876 677 22 9 3670 4321 393657124 393656456 0.000000e+00 915.0
16 TraesCS6A01G306400 chr6D 89.714 525 17 15 685 1187 393660194 393659685 1.930000e-178 636.0
17 TraesCS6A01G306400 chr6D 96.477 369 11 2 4538 4906 393656514 393656148 4.200000e-170 608.0
18 TraesCS6A01G306400 chr6D 90.732 205 15 3 4309 4510 393656435 393656232 2.250000e-68 270.0
19 TraesCS6A01G306400 chr6D 85.656 244 26 7 394 635 393661914 393661678 1.050000e-61 248.0
20 TraesCS6A01G306400 chr6D 94.828 116 5 1 391 505 393660344 393660229 3.900000e-41 180.0
21 TraesCS6A01G306400 chr6D 93.519 108 5 1 1 108 305136288 305136393 5.080000e-35 159.0
22 TraesCS6A01G306400 chr3A 94.643 280 15 0 115 394 361973025 361973304 7.540000e-118 435.0
23 TraesCS6A01G306400 chr7A 94.928 276 14 0 120 395 696328264 696328539 2.710000e-117 433.0
24 TraesCS6A01G306400 chr7A 93.662 284 18 0 116 399 521964255 521963972 4.540000e-115 425.0
25 TraesCS6A01G306400 chr7A 88.667 150 15 2 2144 2292 139548726 139548578 1.080000e-41 182.0
26 TraesCS6A01G306400 chr7A 86.726 113 13 2 6 118 584375910 584376020 1.850000e-24 124.0
27 TraesCS6A01G306400 chr7A 90.323 62 5 1 1001 1061 139550107 139550046 4.070000e-11 80.5
28 TraesCS6A01G306400 chr2A 94.604 278 15 0 116 393 722516002 722516279 9.760000e-117 431.0
29 TraesCS6A01G306400 chr2A 89.209 139 13 2 4572 4709 40832085 40831948 6.530000e-39 172.0
30 TraesCS6A01G306400 chr1A 95.221 272 13 0 120 391 53022262 53021991 9.760000e-117 431.0
31 TraesCS6A01G306400 chr1A 86.093 151 19 1 4754 4902 504252439 504252589 1.410000e-35 161.0
32 TraesCS6A01G306400 chr1A 86.957 115 12 2 1 115 449560090 449559979 5.160000e-25 126.0
33 TraesCS6A01G306400 chr4A 94.245 278 16 0 116 393 537335998 537336275 4.540000e-115 425.0
34 TraesCS6A01G306400 chr4A 93.617 282 18 0 113 394 445072744 445073025 5.870000e-114 422.0
35 TraesCS6A01G306400 chr4B 93.950 281 15 2 114 393 50441096 50441375 1.630000e-114 424.0
36 TraesCS6A01G306400 chr4B 92.079 101 6 2 18 118 15130707 15130609 1.840000e-29 141.0
37 TraesCS6A01G306400 chr5A 93.907 279 17 0 115 393 565379093 565379371 5.870000e-114 422.0
38 TraesCS6A01G306400 chr3D 95.575 113 5 0 1 113 253708254 253708366 1.080000e-41 182.0
39 TraesCS6A01G306400 chr7D 88.591 149 15 2 2145 2292 139850276 139850129 3.900000e-41 180.0
40 TraesCS6A01G306400 chr7D 90.323 62 5 1 1001 1061 139851629 139851568 4.070000e-11 80.5
41 TraesCS6A01G306400 chr1D 89.928 139 12 2 4572 4709 408251251 408251388 1.400000e-40 178.0
42 TraesCS6A01G306400 chr1D 86.755 151 18 1 4754 4902 408251397 408251547 3.040000e-37 167.0
43 TraesCS6A01G306400 chr7B 88.000 150 16 2 2144 2292 104775892 104775744 5.050000e-40 176.0
44 TraesCS6A01G306400 chr7B 90.323 62 5 1 1001 1061 104777326 104777265 4.070000e-11 80.5
45 TraesCS6A01G306400 chr1B 90.654 107 8 1 1 107 124009738 124009842 1.840000e-29 141.0
46 TraesCS6A01G306400 chr4D 90.217 92 4 4 16 107 364538469 364538555 1.120000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G306400 chr6A 540047445 540052350 4905 True 9060.00 9060 100.000000 1 4906 1 chr6A.!!$R1 4905
1 TraesCS6A01G306400 chr6A 540047528 540048042 514 True 294.00 294 92.718000 4309 4823 2 chr6A.!!$R4 514
2 TraesCS6A01G306400 chr6B 588905962 588909916 3954 True 1121.20 4191 88.274200 392 4677 5 chr6B.!!$R2 4285
3 TraesCS6A01G306400 chr6B 588836230 588836746 516 True 344.75 804 92.882500 4232 4906 4 chr6B.!!$R1 674
4 TraesCS6A01G306400 chr6D 393656148 393661914 5766 True 905.00 3478 91.571143 391 4906 7 chr6D.!!$R1 4515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 558 0.035036 TTTGCGGTATCACGTCCCAA 59.965 50.0 0.00 0.0 35.98 4.12 F
906 2398 0.187361 CCTCCTTCCAAACCAACCCA 59.813 55.0 0.00 0.0 0.00 4.51 F
978 2485 0.376502 GCCTCAGATTCGCAGCTTTC 59.623 55.0 0.00 0.0 0.00 2.62 F
1191 2749 0.524392 TCGTTTTGTGCGCTGGTTTG 60.524 50.0 9.73 0.0 0.00 2.93 F
1321 2880 0.883833 GTGTGGTTGGATTCAGGCAG 59.116 55.0 0.00 0.0 0.00 4.85 F
1345 2904 1.002069 ATTCATGGCAGGGTTCAGGA 58.998 50.0 0.00 0.0 0.00 3.86 F
2936 4537 1.071605 GCAGTAAGAAGCGTCACCAG 58.928 55.0 1.61 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1577 3149 1.002659 CCTTCCGTGGAACCATACACA 59.997 52.381 0.00 0.0 37.45 3.72 R
2883 4484 0.381801 GCCACTTGCCACCATATTCG 59.618 55.000 0.00 0.0 0.00 3.34 R
2936 4537 6.043411 ACTTTAATCGCTGAGGAAGTATCAC 58.957 40.000 0.00 0.0 0.00 3.06 R
2999 4600 6.458342 CCCTCGACACTTAATGCTAAAATTCC 60.458 42.308 0.00 0.0 0.00 3.01 R
3284 4887 2.291190 TGCCGCAAGTTTAGTGTTAACC 59.709 45.455 2.48 0.0 0.00 2.85 R
3339 4943 5.269189 TGTTCACTATACTCAGGATGGACA 58.731 41.667 0.00 0.0 36.16 4.02 R
4282 5974 1.583556 TCCCATGAGCCAGCTTCTTA 58.416 50.000 0.00 0.0 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.542712 GCACGTGAAATGAGTGTGATT 57.457 42.857 22.23 0.00 38.10 2.57
21 22 3.482786 GCACGTGAAATGAGTGTGATTC 58.517 45.455 22.23 0.00 38.10 2.52
22 23 3.058983 GCACGTGAAATGAGTGTGATTCA 60.059 43.478 22.23 0.00 38.10 2.57
23 24 4.378770 GCACGTGAAATGAGTGTGATTCAT 60.379 41.667 22.23 0.00 38.10 2.57
24 25 5.319139 CACGTGAAATGAGTGTGATTCATC 58.681 41.667 10.90 0.00 34.30 2.92
25 26 4.393062 ACGTGAAATGAGTGTGATTCATCC 59.607 41.667 0.00 0.00 34.30 3.51
26 27 4.633126 CGTGAAATGAGTGTGATTCATCCT 59.367 41.667 0.00 0.00 34.30 3.24
27 28 5.812127 CGTGAAATGAGTGTGATTCATCCTA 59.188 40.000 0.00 0.00 34.30 2.94
28 29 6.313658 CGTGAAATGAGTGTGATTCATCCTAA 59.686 38.462 0.00 0.00 34.30 2.69
29 30 7.011763 CGTGAAATGAGTGTGATTCATCCTAAT 59.988 37.037 0.00 0.00 34.30 1.73
30 31 8.127327 GTGAAATGAGTGTGATTCATCCTAATG 58.873 37.037 0.00 0.00 34.30 1.90
31 32 6.630444 AATGAGTGTGATTCATCCTAATGC 57.370 37.500 0.00 0.00 34.30 3.56
32 33 5.101648 TGAGTGTGATTCATCCTAATGCA 57.898 39.130 0.00 0.00 32.58 3.96
33 34 5.499313 TGAGTGTGATTCATCCTAATGCAA 58.501 37.500 0.00 0.00 32.58 4.08
34 35 6.124340 TGAGTGTGATTCATCCTAATGCAAT 58.876 36.000 0.00 0.00 32.58 3.56
35 36 6.261603 TGAGTGTGATTCATCCTAATGCAATC 59.738 38.462 0.00 0.00 34.03 2.67
36 37 6.124340 AGTGTGATTCATCCTAATGCAATCA 58.876 36.000 0.00 0.00 37.24 2.57
37 38 6.776116 AGTGTGATTCATCCTAATGCAATCAT 59.224 34.615 0.00 0.00 39.20 2.45
38 39 6.861572 GTGTGATTCATCCTAATGCAATCATG 59.138 38.462 0.00 0.00 39.20 3.07
57 58 9.037737 CAATCATGCATGTAATTAAAAGGAAGG 57.962 33.333 25.43 1.67 0.00 3.46
58 59 7.953005 TCATGCATGTAATTAAAAGGAAGGA 57.047 32.000 25.43 0.00 0.00 3.36
59 60 8.359875 TCATGCATGTAATTAAAAGGAAGGAA 57.640 30.769 25.43 0.00 0.00 3.36
60 61 8.469200 TCATGCATGTAATTAAAAGGAAGGAAG 58.531 33.333 25.43 0.00 0.00 3.46
61 62 8.469200 CATGCATGTAATTAAAAGGAAGGAAGA 58.531 33.333 18.91 0.00 0.00 2.87
62 63 8.415950 TGCATGTAATTAAAAGGAAGGAAGAA 57.584 30.769 0.00 0.00 0.00 2.52
63 64 8.522830 TGCATGTAATTAAAAGGAAGGAAGAAG 58.477 33.333 0.00 0.00 0.00 2.85
64 65 8.523658 GCATGTAATTAAAAGGAAGGAAGAAGT 58.476 33.333 0.00 0.00 0.00 3.01
67 68 9.416284 TGTAATTAAAAGGAAGGAAGAAGTTGT 57.584 29.630 0.00 0.00 0.00 3.32
68 69 9.678941 GTAATTAAAAGGAAGGAAGAAGTTGTG 57.321 33.333 0.00 0.00 0.00 3.33
69 70 7.898014 ATTAAAAGGAAGGAAGAAGTTGTGT 57.102 32.000 0.00 0.00 0.00 3.72
70 71 5.582689 AAAAGGAAGGAAGAAGTTGTGTG 57.417 39.130 0.00 0.00 0.00 3.82
71 72 4.503714 AAGGAAGGAAGAAGTTGTGTGA 57.496 40.909 0.00 0.00 0.00 3.58
72 73 4.713792 AGGAAGGAAGAAGTTGTGTGAT 57.286 40.909 0.00 0.00 0.00 3.06
73 74 5.825593 AGGAAGGAAGAAGTTGTGTGATA 57.174 39.130 0.00 0.00 0.00 2.15
74 75 5.799213 AGGAAGGAAGAAGTTGTGTGATAG 58.201 41.667 0.00 0.00 0.00 2.08
75 76 5.308237 AGGAAGGAAGAAGTTGTGTGATAGT 59.692 40.000 0.00 0.00 0.00 2.12
76 77 5.998363 GGAAGGAAGAAGTTGTGTGATAGTT 59.002 40.000 0.00 0.00 0.00 2.24
77 78 6.486993 GGAAGGAAGAAGTTGTGTGATAGTTT 59.513 38.462 0.00 0.00 0.00 2.66
78 79 7.013369 GGAAGGAAGAAGTTGTGTGATAGTTTT 59.987 37.037 0.00 0.00 0.00 2.43
79 80 8.974060 AAGGAAGAAGTTGTGTGATAGTTTTA 57.026 30.769 0.00 0.00 0.00 1.52
80 81 8.608844 AGGAAGAAGTTGTGTGATAGTTTTAG 57.391 34.615 0.00 0.00 0.00 1.85
81 82 7.173390 AGGAAGAAGTTGTGTGATAGTTTTAGC 59.827 37.037 0.00 0.00 0.00 3.09
82 83 7.173390 GGAAGAAGTTGTGTGATAGTTTTAGCT 59.827 37.037 0.00 0.00 0.00 3.32
83 84 9.204570 GAAGAAGTTGTGTGATAGTTTTAGCTA 57.795 33.333 0.00 0.00 0.00 3.32
84 85 9.726438 AAGAAGTTGTGTGATAGTTTTAGCTAT 57.274 29.630 0.00 0.00 34.64 2.97
88 89 9.547753 AGTTGTGTGATAGTTTTAGCTATATGG 57.452 33.333 0.00 0.00 32.32 2.74
89 90 7.962964 TGTGTGATAGTTTTAGCTATATGGC 57.037 36.000 2.23 2.23 32.32 4.40
90 91 7.505258 TGTGTGATAGTTTTAGCTATATGGCA 58.495 34.615 14.03 0.00 32.32 4.92
91 92 7.441157 TGTGTGATAGTTTTAGCTATATGGCAC 59.559 37.037 14.03 2.57 32.32 5.01
92 93 7.441157 GTGTGATAGTTTTAGCTATATGGCACA 59.559 37.037 14.03 1.92 35.58 4.57
93 94 7.441157 TGTGATAGTTTTAGCTATATGGCACAC 59.559 37.037 14.03 4.14 34.48 3.82
94 95 6.645003 TGATAGTTTTAGCTATATGGCACACG 59.355 38.462 14.03 0.00 34.48 4.49
95 96 6.645415 GATAGTTTTAGCTATATGGCACACGT 59.355 38.462 14.03 0.00 34.48 4.49
96 97 7.359264 GATAGTTTTAGCTATATGGCACACGTG 60.359 40.741 15.48 15.48 34.48 4.49
111 112 4.634000 CACACGTGTGTCAAATATTACGG 58.366 43.478 35.03 9.31 42.83 4.02
112 113 4.150980 CACACGTGTGTCAAATATTACGGT 59.849 41.667 35.03 0.00 42.83 4.83
113 114 4.751098 ACACGTGTGTCAAATATTACGGTT 59.249 37.500 22.71 0.00 40.24 4.44
114 115 5.107375 ACACGTGTGTCAAATATTACGGTTC 60.107 40.000 22.71 0.00 40.24 3.62
115 116 5.119588 CACGTGTGTCAAATATTACGGTTCT 59.880 40.000 7.58 0.00 36.01 3.01
116 117 6.308524 CACGTGTGTCAAATATTACGGTTCTA 59.691 38.462 7.58 0.00 36.01 2.10
117 118 6.867816 ACGTGTGTCAAATATTACGGTTCTAA 59.132 34.615 10.10 0.00 36.01 2.10
118 119 7.384660 ACGTGTGTCAAATATTACGGTTCTAAA 59.615 33.333 10.10 0.00 36.01 1.85
119 120 7.896274 CGTGTGTCAAATATTACGGTTCTAAAG 59.104 37.037 0.00 0.00 0.00 1.85
120 121 8.173130 GTGTGTCAAATATTACGGTTCTAAAGG 58.827 37.037 0.00 0.00 0.00 3.11
121 122 7.148373 TGTGTCAAATATTACGGTTCTAAAGGC 60.148 37.037 0.00 0.00 0.00 4.35
122 123 6.879993 TGTCAAATATTACGGTTCTAAAGGCA 59.120 34.615 0.00 0.00 0.00 4.75
123 124 7.554835 TGTCAAATATTACGGTTCTAAAGGCAT 59.445 33.333 0.00 0.00 0.00 4.40
124 125 7.855904 GTCAAATATTACGGTTCTAAAGGCATG 59.144 37.037 0.00 0.00 0.00 4.06
125 126 7.554835 TCAAATATTACGGTTCTAAAGGCATGT 59.445 33.333 0.00 0.00 0.00 3.21
126 127 8.832521 CAAATATTACGGTTCTAAAGGCATGTA 58.167 33.333 0.00 0.00 0.00 2.29
127 128 7.958053 ATATTACGGTTCTAAAGGCATGTAC 57.042 36.000 0.00 0.00 0.00 2.90
128 129 3.688694 ACGGTTCTAAAGGCATGTACA 57.311 42.857 0.00 0.00 0.00 2.90
129 130 4.010667 ACGGTTCTAAAGGCATGTACAA 57.989 40.909 0.00 0.00 0.00 2.41
130 131 4.585879 ACGGTTCTAAAGGCATGTACAAT 58.414 39.130 0.00 0.00 0.00 2.71
131 132 4.394920 ACGGTTCTAAAGGCATGTACAATG 59.605 41.667 0.00 0.12 0.00 2.82
132 133 4.201910 CGGTTCTAAAGGCATGTACAATGG 60.202 45.833 0.00 0.00 0.00 3.16
133 134 4.705023 GGTTCTAAAGGCATGTACAATGGT 59.295 41.667 0.00 0.00 0.00 3.55
134 135 5.185056 GGTTCTAAAGGCATGTACAATGGTT 59.815 40.000 0.00 0.00 0.00 3.67
135 136 5.895636 TCTAAAGGCATGTACAATGGTTG 57.104 39.130 0.00 0.00 0.00 3.77
136 137 5.565509 TCTAAAGGCATGTACAATGGTTGA 58.434 37.500 0.00 0.00 0.00 3.18
137 138 6.186957 TCTAAAGGCATGTACAATGGTTGAT 58.813 36.000 0.00 0.00 0.00 2.57
138 139 7.342581 TCTAAAGGCATGTACAATGGTTGATA 58.657 34.615 0.00 0.00 0.00 2.15
139 140 6.849085 AAAGGCATGTACAATGGTTGATAA 57.151 33.333 0.00 0.00 0.00 1.75
140 141 6.455360 AAGGCATGTACAATGGTTGATAAG 57.545 37.500 0.00 0.00 0.00 1.73
141 142 5.754782 AGGCATGTACAATGGTTGATAAGA 58.245 37.500 0.00 0.00 0.00 2.10
142 143 6.367983 AGGCATGTACAATGGTTGATAAGAT 58.632 36.000 0.00 0.00 0.00 2.40
143 144 7.517320 AGGCATGTACAATGGTTGATAAGATA 58.483 34.615 0.00 0.00 0.00 1.98
144 145 7.663081 AGGCATGTACAATGGTTGATAAGATAG 59.337 37.037 0.00 0.00 0.00 2.08
145 146 7.445402 GGCATGTACAATGGTTGATAAGATAGT 59.555 37.037 0.00 0.00 0.00 2.12
146 147 8.499162 GCATGTACAATGGTTGATAAGATAGTC 58.501 37.037 0.00 0.00 0.00 2.59
147 148 9.770097 CATGTACAATGGTTGATAAGATAGTCT 57.230 33.333 0.00 0.00 0.00 3.24
180 181 9.846248 AAGTTTTGCATGTAATTTAGAGATGAC 57.154 29.630 0.00 0.00 0.00 3.06
181 182 9.013229 AGTTTTGCATGTAATTTAGAGATGACA 57.987 29.630 0.00 0.00 0.00 3.58
182 183 9.624697 GTTTTGCATGTAATTTAGAGATGACAA 57.375 29.630 0.00 0.00 0.00 3.18
184 185 9.844790 TTTGCATGTAATTTAGAGATGACAAAG 57.155 29.630 0.00 0.00 0.00 2.77
185 186 8.791327 TGCATGTAATTTAGAGATGACAAAGA 57.209 30.769 0.00 0.00 0.00 2.52
186 187 9.230122 TGCATGTAATTTAGAGATGACAAAGAA 57.770 29.630 0.00 0.00 0.00 2.52
202 203 8.430801 TGACAAAGAAAAATGTTTACAATGGG 57.569 30.769 0.00 0.00 0.00 4.00
203 204 8.043710 TGACAAAGAAAAATGTTTACAATGGGT 58.956 29.630 0.00 0.00 0.00 4.51
204 205 8.432110 ACAAAGAAAAATGTTTACAATGGGTC 57.568 30.769 0.00 0.00 0.00 4.46
205 206 8.043710 ACAAAGAAAAATGTTTACAATGGGTCA 58.956 29.630 0.00 0.00 0.00 4.02
206 207 9.054922 CAAAGAAAAATGTTTACAATGGGTCAT 57.945 29.630 0.00 0.00 0.00 3.06
207 208 8.831715 AAGAAAAATGTTTACAATGGGTCATC 57.168 30.769 0.00 0.00 0.00 2.92
208 209 8.193953 AGAAAAATGTTTACAATGGGTCATCT 57.806 30.769 0.00 0.00 0.00 2.90
209 210 8.306761 AGAAAAATGTTTACAATGGGTCATCTC 58.693 33.333 0.00 0.00 0.00 2.75
210 211 7.781324 AAAATGTTTACAATGGGTCATCTCT 57.219 32.000 0.00 0.00 0.00 3.10
211 212 7.781324 AAATGTTTACAATGGGTCATCTCTT 57.219 32.000 0.00 0.00 0.00 2.85
212 213 8.877864 AAATGTTTACAATGGGTCATCTCTTA 57.122 30.769 0.00 0.00 0.00 2.10
213 214 8.511604 AATGTTTACAATGGGTCATCTCTTAG 57.488 34.615 0.00 0.00 0.00 2.18
214 215 7.016153 TGTTTACAATGGGTCATCTCTTAGT 57.984 36.000 0.00 0.00 0.00 2.24
215 216 7.103641 TGTTTACAATGGGTCATCTCTTAGTC 58.896 38.462 0.00 0.00 0.00 2.59
216 217 7.038302 TGTTTACAATGGGTCATCTCTTAGTCT 60.038 37.037 0.00 0.00 0.00 3.24
217 218 7.496346 TTACAATGGGTCATCTCTTAGTCTT 57.504 36.000 0.00 0.00 0.00 3.01
218 219 8.603898 TTACAATGGGTCATCTCTTAGTCTTA 57.396 34.615 0.00 0.00 0.00 2.10
219 220 7.682787 ACAATGGGTCATCTCTTAGTCTTAT 57.317 36.000 0.00 0.00 0.00 1.73
220 221 7.731054 ACAATGGGTCATCTCTTAGTCTTATC 58.269 38.462 0.00 0.00 0.00 1.75
221 222 7.566879 ACAATGGGTCATCTCTTAGTCTTATCT 59.433 37.037 0.00 0.00 0.00 1.98
222 223 8.428063 CAATGGGTCATCTCTTAGTCTTATCTT 58.572 37.037 0.00 0.00 0.00 2.40
223 224 7.589958 TGGGTCATCTCTTAGTCTTATCTTC 57.410 40.000 0.00 0.00 0.00 2.87
224 225 7.126061 TGGGTCATCTCTTAGTCTTATCTTCA 58.874 38.462 0.00 0.00 0.00 3.02
225 226 7.619698 TGGGTCATCTCTTAGTCTTATCTTCAA 59.380 37.037 0.00 0.00 0.00 2.69
226 227 8.646900 GGGTCATCTCTTAGTCTTATCTTCAAT 58.353 37.037 0.00 0.00 0.00 2.57
251 252 7.933215 AACTAGCAATTCCTAAAAATACGGT 57.067 32.000 0.00 0.00 0.00 4.83
252 253 7.316544 ACTAGCAATTCCTAAAAATACGGTG 57.683 36.000 0.00 0.00 0.00 4.94
253 254 7.107542 ACTAGCAATTCCTAAAAATACGGTGA 58.892 34.615 0.00 0.00 0.00 4.02
254 255 6.827586 AGCAATTCCTAAAAATACGGTGAA 57.172 33.333 0.00 0.00 0.00 3.18
255 256 7.222000 AGCAATTCCTAAAAATACGGTGAAA 57.778 32.000 0.00 0.00 0.00 2.69
256 257 7.088272 AGCAATTCCTAAAAATACGGTGAAAC 58.912 34.615 0.00 0.00 0.00 2.78
257 258 6.864165 GCAATTCCTAAAAATACGGTGAAACA 59.136 34.615 0.00 0.00 39.98 2.83
258 259 7.544217 GCAATTCCTAAAAATACGGTGAAACAT 59.456 33.333 0.00 0.00 39.98 2.71
295 296 9.723601 GAGATCATCTCTTGCCTTATCTTAAAT 57.276 33.333 7.48 0.00 40.30 1.40
322 323 9.487790 AAGAGAAGACAAGACTTTTCTTATGAG 57.512 33.333 14.31 0.00 44.04 2.90
323 324 8.646900 AGAGAAGACAAGACTTTTCTTATGAGT 58.353 33.333 14.31 0.00 40.34 3.41
324 325 9.267084 GAGAAGACAAGACTTTTCTTATGAGTT 57.733 33.333 14.31 0.00 40.34 3.01
325 326 9.267084 AGAAGACAAGACTTTTCTTATGAGTTC 57.733 33.333 14.99 3.47 40.34 3.01
326 327 9.267084 GAAGACAAGACTTTTCTTATGAGTTCT 57.733 33.333 14.99 0.00 40.34 3.01
327 328 8.825667 AGACAAGACTTTTCTTATGAGTTCTC 57.174 34.615 0.00 0.00 40.34 2.87
328 329 8.646900 AGACAAGACTTTTCTTATGAGTTCTCT 58.353 33.333 0.00 0.00 40.34 3.10
329 330 8.825667 ACAAGACTTTTCTTATGAGTTCTCTC 57.174 34.615 1.53 0.00 40.34 3.20
330 331 8.646900 ACAAGACTTTTCTTATGAGTTCTCTCT 58.353 33.333 1.53 0.00 40.34 3.10
331 332 9.139174 CAAGACTTTTCTTATGAGTTCTCTCTC 57.861 37.037 1.53 0.00 40.34 3.20
332 333 7.836842 AGACTTTTCTTATGAGTTCTCTCTCC 58.163 38.462 1.53 0.00 40.98 3.71
333 334 7.673926 AGACTTTTCTTATGAGTTCTCTCTCCT 59.326 37.037 1.53 0.00 40.98 3.69
334 335 7.836842 ACTTTTCTTATGAGTTCTCTCTCCTC 58.163 38.462 1.53 0.00 40.98 3.71
335 336 6.783708 TTTCTTATGAGTTCTCTCTCCTCC 57.216 41.667 1.53 0.00 40.98 4.30
336 337 5.458451 TCTTATGAGTTCTCTCTCCTCCA 57.542 43.478 1.53 0.00 40.98 3.86
337 338 5.197451 TCTTATGAGTTCTCTCTCCTCCAC 58.803 45.833 1.53 0.00 40.98 4.02
338 339 2.223803 TGAGTTCTCTCTCCTCCACC 57.776 55.000 1.53 0.00 40.98 4.61
339 340 1.713647 TGAGTTCTCTCTCCTCCACCT 59.286 52.381 1.53 0.00 40.98 4.00
340 341 2.291282 TGAGTTCTCTCTCCTCCACCTC 60.291 54.545 1.53 0.00 40.98 3.85
341 342 1.713647 AGTTCTCTCTCCTCCACCTCA 59.286 52.381 0.00 0.00 0.00 3.86
342 343 2.314549 AGTTCTCTCTCCTCCACCTCAT 59.685 50.000 0.00 0.00 0.00 2.90
343 344 2.693074 GTTCTCTCTCCTCCACCTCATC 59.307 54.545 0.00 0.00 0.00 2.92
344 345 1.925959 TCTCTCTCCTCCACCTCATCA 59.074 52.381 0.00 0.00 0.00 3.07
345 346 2.517553 TCTCTCTCCTCCACCTCATCAT 59.482 50.000 0.00 0.00 0.00 2.45
346 347 3.052262 TCTCTCTCCTCCACCTCATCATT 60.052 47.826 0.00 0.00 0.00 2.57
347 348 3.710677 CTCTCTCCTCCACCTCATCATTT 59.289 47.826 0.00 0.00 0.00 2.32
348 349 4.883759 TCTCTCCTCCACCTCATCATTTA 58.116 43.478 0.00 0.00 0.00 1.40
349 350 5.471424 TCTCTCCTCCACCTCATCATTTAT 58.529 41.667 0.00 0.00 0.00 1.40
350 351 5.907662 TCTCTCCTCCACCTCATCATTTATT 59.092 40.000 0.00 0.00 0.00 1.40
351 352 6.042552 TCTCTCCTCCACCTCATCATTTATTC 59.957 42.308 0.00 0.00 0.00 1.75
352 353 5.907662 TCTCCTCCACCTCATCATTTATTCT 59.092 40.000 0.00 0.00 0.00 2.40
353 354 7.075797 TCTCCTCCACCTCATCATTTATTCTA 58.924 38.462 0.00 0.00 0.00 2.10
354 355 7.015682 TCTCCTCCACCTCATCATTTATTCTAC 59.984 40.741 0.00 0.00 0.00 2.59
355 356 6.615316 TCCTCCACCTCATCATTTATTCTACA 59.385 38.462 0.00 0.00 0.00 2.74
356 357 7.293299 TCCTCCACCTCATCATTTATTCTACAT 59.707 37.037 0.00 0.00 0.00 2.29
357 358 7.389884 CCTCCACCTCATCATTTATTCTACATG 59.610 40.741 0.00 0.00 0.00 3.21
358 359 7.226441 TCCACCTCATCATTTATTCTACATGG 58.774 38.462 0.00 0.00 0.00 3.66
359 360 6.072286 CCACCTCATCATTTATTCTACATGGC 60.072 42.308 0.00 0.00 0.00 4.40
360 361 6.487668 CACCTCATCATTTATTCTACATGGCA 59.512 38.462 0.00 0.00 0.00 4.92
361 362 6.488006 ACCTCATCATTTATTCTACATGGCAC 59.512 38.462 0.00 0.00 0.00 5.01
362 363 6.713903 CCTCATCATTTATTCTACATGGCACT 59.286 38.462 0.00 0.00 0.00 4.40
363 364 7.094890 CCTCATCATTTATTCTACATGGCACTC 60.095 40.741 0.00 0.00 0.00 3.51
364 365 6.712095 TCATCATTTATTCTACATGGCACTCC 59.288 38.462 0.00 0.00 0.00 3.85
365 366 6.252599 TCATTTATTCTACATGGCACTCCT 57.747 37.500 0.00 0.00 0.00 3.69
366 367 7.373617 TCATTTATTCTACATGGCACTCCTA 57.626 36.000 0.00 0.00 0.00 2.94
367 368 7.801104 TCATTTATTCTACATGGCACTCCTAA 58.199 34.615 0.00 0.00 0.00 2.69
368 369 7.933577 TCATTTATTCTACATGGCACTCCTAAG 59.066 37.037 0.00 0.00 0.00 2.18
369 370 7.432148 TTTATTCTACATGGCACTCCTAAGA 57.568 36.000 0.00 0.00 0.00 2.10
370 371 7.618019 TTATTCTACATGGCACTCCTAAGAT 57.382 36.000 0.00 0.00 0.00 2.40
371 372 8.721133 TTATTCTACATGGCACTCCTAAGATA 57.279 34.615 0.00 0.00 0.00 1.98
372 373 6.656632 TTCTACATGGCACTCCTAAGATAG 57.343 41.667 0.00 0.00 0.00 2.08
373 374 3.760580 ACATGGCACTCCTAAGATAGC 57.239 47.619 0.00 0.00 0.00 2.97
374 375 3.041211 ACATGGCACTCCTAAGATAGCA 58.959 45.455 0.00 0.00 0.00 3.49
375 376 3.649981 ACATGGCACTCCTAAGATAGCAT 59.350 43.478 0.00 0.00 0.00 3.79
376 377 4.252073 CATGGCACTCCTAAGATAGCATC 58.748 47.826 0.00 0.00 0.00 3.91
377 378 3.308401 TGGCACTCCTAAGATAGCATCA 58.692 45.455 0.00 0.00 0.00 3.07
378 379 3.906218 TGGCACTCCTAAGATAGCATCAT 59.094 43.478 0.00 0.00 0.00 2.45
379 380 4.349048 TGGCACTCCTAAGATAGCATCATT 59.651 41.667 0.00 0.00 0.00 2.57
380 381 4.694509 GGCACTCCTAAGATAGCATCATTG 59.305 45.833 0.00 0.00 0.00 2.82
381 382 5.303971 GCACTCCTAAGATAGCATCATTGT 58.696 41.667 0.00 0.00 0.00 2.71
382 383 6.459066 GCACTCCTAAGATAGCATCATTGTA 58.541 40.000 0.00 0.00 0.00 2.41
383 384 6.367422 GCACTCCTAAGATAGCATCATTGTAC 59.633 42.308 0.00 0.00 0.00 2.90
384 385 7.436933 CACTCCTAAGATAGCATCATTGTACA 58.563 38.462 0.00 0.00 0.00 2.90
385 386 8.093307 CACTCCTAAGATAGCATCATTGTACAT 58.907 37.037 0.00 0.00 0.00 2.29
386 387 8.093307 ACTCCTAAGATAGCATCATTGTACATG 58.907 37.037 0.00 0.00 0.00 3.21
387 388 6.875726 TCCTAAGATAGCATCATTGTACATGC 59.124 38.462 10.53 10.53 44.96 4.06
388 389 5.954296 AAGATAGCATCATTGTACATGCC 57.046 39.130 14.08 1.71 45.63 4.40
389 390 4.330250 AGATAGCATCATTGTACATGCCC 58.670 43.478 14.08 5.86 45.63 5.36
390 391 2.742428 AGCATCATTGTACATGCCCT 57.258 45.000 14.08 0.00 45.63 5.19
403 404 8.862325 TTGTACATGCCCTAATAATAATCCAG 57.138 34.615 0.00 0.00 0.00 3.86
488 491 3.858247 AGGTTTCCGAAATAGACTTCCG 58.142 45.455 0.00 0.00 0.00 4.30
555 558 0.035036 TTTGCGGTATCACGTCCCAA 59.965 50.000 0.00 0.00 35.98 4.12
568 571 2.037381 ACGTCCCAACCTCTTTTCTCTC 59.963 50.000 0.00 0.00 0.00 3.20
570 573 2.037381 GTCCCAACCTCTTTTCTCTCGT 59.963 50.000 0.00 0.00 0.00 4.18
644 2136 9.301153 GCAGAAAAGAAAACTATGTCTCAAAAA 57.699 29.630 0.00 0.00 0.00 1.94
677 2169 9.894783 GAAAGAAAACTAGTATTTCTGAAACCC 57.105 33.333 22.54 0.00 44.22 4.11
678 2170 7.997773 AGAAAACTAGTATTTCTGAAACCCC 57.002 36.000 21.79 0.00 43.56 4.95
679 2171 7.756614 AGAAAACTAGTATTTCTGAAACCCCT 58.243 34.615 21.79 4.43 43.56 4.79
680 2172 8.887393 AGAAAACTAGTATTTCTGAAACCCCTA 58.113 33.333 21.79 5.30 43.56 3.53
681 2173 9.511272 GAAAACTAGTATTTCTGAAACCCCTAA 57.489 33.333 4.73 0.00 34.65 2.69
682 2174 9.871175 AAAACTAGTATTTCTGAAACCCCTAAA 57.129 29.630 4.73 0.00 0.00 1.85
683 2175 9.871175 AAACTAGTATTTCTGAAACCCCTAAAA 57.129 29.630 4.73 0.00 0.00 1.52
684 2176 9.871175 AACTAGTATTTCTGAAACCCCTAAAAA 57.129 29.630 4.73 0.00 0.00 1.94
755 2247 2.509336 GATCTGGGTCCACGCGTG 60.509 66.667 31.77 31.77 0.00 5.34
834 2326 1.007387 GCAACAAGAAAGCGTGGGG 60.007 57.895 0.00 0.00 0.00 4.96
896 2388 1.615424 GGTAGGTGGCCTCCTTCCA 60.615 63.158 33.21 15.94 42.29 3.53
901 2393 1.152830 GTGGCCTCCTTCCAAACCA 59.847 57.895 3.32 0.00 35.01 3.67
903 2395 0.469144 TGGCCTCCTTCCAAACCAAC 60.469 55.000 3.32 0.00 0.00 3.77
904 2396 1.185618 GGCCTCCTTCCAAACCAACC 61.186 60.000 0.00 0.00 0.00 3.77
905 2397 1.185618 GCCTCCTTCCAAACCAACCC 61.186 60.000 0.00 0.00 0.00 4.11
906 2398 0.187361 CCTCCTTCCAAACCAACCCA 59.813 55.000 0.00 0.00 0.00 4.51
907 2399 1.412361 CCTCCTTCCAAACCAACCCAA 60.412 52.381 0.00 0.00 0.00 4.12
908 2400 1.686587 CTCCTTCCAAACCAACCCAAC 59.313 52.381 0.00 0.00 0.00 3.77
935 2427 1.440938 CGGGCGGCGGAAATAAATCA 61.441 55.000 11.32 0.00 0.00 2.57
977 2484 1.364626 CGCCTCAGATTCGCAGCTTT 61.365 55.000 0.00 0.00 0.00 3.51
978 2485 0.376502 GCCTCAGATTCGCAGCTTTC 59.623 55.000 0.00 0.00 0.00 2.62
1047 2554 2.081212 CGTCAGCAACCTCGACGTC 61.081 63.158 5.18 5.18 45.59 4.34
1098 2609 0.967887 TCTGCTCCCTGTTCCTCTCG 60.968 60.000 0.00 0.00 0.00 4.04
1191 2749 0.524392 TCGTTTTGTGCGCTGGTTTG 60.524 50.000 9.73 0.00 0.00 2.93
1197 2755 4.892965 TGCGCTGGTTTGTGGGCT 62.893 61.111 9.73 0.00 41.71 5.19
1198 2756 2.671619 GCGCTGGTTTGTGGGCTA 60.672 61.111 0.00 0.00 38.77 3.93
1228 2786 2.673341 TCGCTCACAGTCTCGCCT 60.673 61.111 0.00 0.00 0.00 5.52
1282 2841 7.222224 GGTAGGAACTTCGATTGTTAGTGTATG 59.778 40.741 4.62 0.00 41.75 2.39
1302 2861 2.224475 TGTGGTGGGGAAATTTTGCATG 60.224 45.455 2.98 0.00 0.00 4.06
1315 2874 3.383620 TTTGCATGTGTGGTTGGATTC 57.616 42.857 0.00 0.00 0.00 2.52
1316 2875 1.992538 TGCATGTGTGGTTGGATTCA 58.007 45.000 0.00 0.00 0.00 2.57
1321 2880 0.883833 GTGTGGTTGGATTCAGGCAG 59.116 55.000 0.00 0.00 0.00 4.85
1345 2904 1.002069 ATTCATGGCAGGGTTCAGGA 58.998 50.000 0.00 0.00 0.00 3.86
1413 2972 3.877951 CTGATTTCTCAGGGCTGCT 57.122 52.632 0.00 0.00 44.40 4.24
1501 3062 1.194781 ATGTGACCTGTCTTCCGGCT 61.195 55.000 0.00 0.00 0.00 5.52
1517 3078 7.873505 GTCTTCCGGCTTAGATTATGTAGATTT 59.126 37.037 0.00 0.00 0.00 2.17
1562 3134 4.249661 AGATTCGTTCCTCAGCTTCTTTC 58.750 43.478 0.00 0.00 0.00 2.62
1592 3164 3.070748 TGTCATTGTGTATGGTTCCACG 58.929 45.455 0.00 0.00 34.85 4.94
1697 3287 7.810766 ATGGTTTTACATCTTTTGCATAACG 57.189 32.000 0.00 0.00 0.00 3.18
1737 3327 4.098960 TGATGTTCCGTAAGACTGGGATAC 59.901 45.833 0.00 0.00 43.02 2.24
1827 3422 6.407865 GGCTATGTCATATATGCCATCTCAGT 60.408 42.308 12.31 0.00 40.04 3.41
1942 3537 2.171003 GCTGTAAATTGGGGAAGCAGT 58.829 47.619 0.00 0.00 0.00 4.40
2003 3598 8.445588 TCATCCTGTATTAGTACTGATGAGGTA 58.554 37.037 19.10 11.36 40.60 3.08
2004 3599 9.249053 CATCCTGTATTAGTACTGATGAGGTAT 57.751 37.037 19.10 12.48 39.94 2.73
2417 4013 5.128827 GTCTTACTGTAATGATCACCTGGGA 59.871 44.000 0.00 0.00 0.00 4.37
2419 4015 4.222124 ACTGTAATGATCACCTGGGAAC 57.778 45.455 0.00 0.00 0.00 3.62
2485 4086 7.439108 ACCTTCTCTGCTTTGGTAGTATAAT 57.561 36.000 0.00 0.00 0.00 1.28
2486 4087 8.548880 ACCTTCTCTGCTTTGGTAGTATAATA 57.451 34.615 0.00 0.00 0.00 0.98
2487 4088 8.422566 ACCTTCTCTGCTTTGGTAGTATAATAC 58.577 37.037 1.66 1.66 0.00 1.89
2524 4125 2.894731 CTACTATCCTCATGGCTGGGA 58.105 52.381 0.00 0.00 0.00 4.37
2663 4264 1.073284 TGGTTGGTCTTGCCCTACTTC 59.927 52.381 0.00 0.00 36.04 3.01
2883 4484 8.944212 ATGTAAATTTTACAGTACTCGTTTGC 57.056 30.769 22.49 0.00 0.00 3.68
2936 4537 1.071605 GCAGTAAGAAGCGTCACCAG 58.928 55.000 1.61 0.00 0.00 4.00
2999 4600 8.711457 TGCATGATAATGTGATTACTGATTACG 58.289 33.333 0.00 0.00 0.00 3.18
3255 4858 3.306502 GGTTTAGAATGTGGTCCACTCGA 60.307 47.826 22.56 6.76 35.11 4.04
3284 4887 4.287238 AGTTGGCTTGTTAAGTTCAACG 57.713 40.909 16.22 0.00 43.10 4.10
3339 4943 5.721960 TCCCTTTGCTTAGAAGATGTACTCT 59.278 40.000 0.00 0.00 34.96 3.24
3380 4984 8.776376 AGTGAACAACTGAACATTCAAAATTT 57.224 26.923 0.00 0.00 37.88 1.82
3381 4985 8.658609 AGTGAACAACTGAACATTCAAAATTTG 58.341 29.630 0.00 0.00 37.88 2.32
3382 4986 8.442384 GTGAACAACTGAACATTCAAAATTTGT 58.558 29.630 5.56 1.47 36.64 2.83
3383 4987 8.997323 TGAACAACTGAACATTCAAAATTTGTT 58.003 25.926 15.87 15.87 37.95 2.83
3450 5054 2.231716 AGTTTTCCCTTGCATACCCC 57.768 50.000 0.00 0.00 0.00 4.95
3508 5112 7.839705 AGTATGGTCTAGAGAATACAACTTCCA 59.160 37.037 19.65 9.23 0.00 3.53
3514 5118 7.546316 GTCTAGAGAATACAACTTCCAAAGGTC 59.454 40.741 0.00 0.00 0.00 3.85
3586 5203 3.041211 TGGAGTATCATGTCTTCAGGGG 58.959 50.000 0.00 0.00 36.25 4.79
3596 5213 3.008517 TTCAGGGGCGGATGCAGA 61.009 61.111 0.00 0.00 45.35 4.26
3636 5253 2.215942 AGTGGAAATAAGTGCCCCAC 57.784 50.000 0.00 0.00 45.57 4.61
3689 5309 3.499918 CCTTGTTCACACCAGAGATGTTC 59.500 47.826 0.00 0.00 0.00 3.18
3734 5399 5.743026 TTTTCTTGTTTGATGCGACAGTA 57.257 34.783 0.00 0.00 0.00 2.74
3832 5497 4.175962 TCAATTTTGGAGGAGGTAGAGGT 58.824 43.478 0.00 0.00 0.00 3.85
3931 5596 1.462670 GAAAGCTCTTCTGTTCAGGCG 59.537 52.381 0.00 0.00 0.00 5.52
4194 5885 6.694411 GGATGACTGAAATTTGTGTATGCATC 59.306 38.462 0.19 4.15 0.00 3.91
4260 5951 1.804151 GCAGTACTGGCAAATGAACGA 59.196 47.619 23.95 0.00 0.00 3.85
4261 5952 2.159653 GCAGTACTGGCAAATGAACGAG 60.160 50.000 23.95 0.00 0.00 4.18
4275 5967 4.223320 TGAACGAGAAAATGAAGGCAAC 57.777 40.909 0.00 0.00 0.00 4.17
4303 5995 0.924823 AGAAGCTGGCTCATGGGAAT 59.075 50.000 0.00 0.00 0.00 3.01
4304 5996 2.130193 AGAAGCTGGCTCATGGGAATA 58.870 47.619 0.00 0.00 0.00 1.75
4305 5997 2.715336 AGAAGCTGGCTCATGGGAATAT 59.285 45.455 0.00 0.00 0.00 1.28
4306 5998 3.912528 AGAAGCTGGCTCATGGGAATATA 59.087 43.478 0.00 0.00 0.00 0.86
4307 5999 3.710209 AGCTGGCTCATGGGAATATAC 57.290 47.619 0.00 0.00 0.00 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.058983 TGAATCACACTCATTTCACGTGC 60.059 43.478 11.67 0.00 32.07 5.34
1 2 4.730600 TGAATCACACTCATTTCACGTG 57.269 40.909 9.94 9.94 34.92 4.49
4 5 7.615582 TTAGGATGAATCACACTCATTTCAC 57.384 36.000 0.00 0.00 33.63 3.18
5 6 7.201758 GCATTAGGATGAATCACACTCATTTCA 60.202 37.037 0.00 0.00 33.63 2.69
6 7 7.137426 GCATTAGGATGAATCACACTCATTTC 58.863 38.462 0.00 0.00 33.63 2.17
7 8 6.604396 TGCATTAGGATGAATCACACTCATTT 59.396 34.615 0.00 0.00 33.63 2.32
8 9 6.124340 TGCATTAGGATGAATCACACTCATT 58.876 36.000 0.00 0.00 33.63 2.57
9 10 5.687780 TGCATTAGGATGAATCACACTCAT 58.312 37.500 0.00 0.00 36.21 2.90
10 11 5.101648 TGCATTAGGATGAATCACACTCA 57.898 39.130 0.00 0.00 35.16 3.41
11 12 6.261603 TGATTGCATTAGGATGAATCACACTC 59.738 38.462 0.00 0.00 36.29 3.51
12 13 6.124340 TGATTGCATTAGGATGAATCACACT 58.876 36.000 0.00 0.00 36.29 3.55
13 14 6.381481 TGATTGCATTAGGATGAATCACAC 57.619 37.500 0.00 0.00 36.29 3.82
14 15 6.977213 CATGATTGCATTAGGATGAATCACA 58.023 36.000 0.00 0.00 39.60 3.58
31 32 9.037737 CCTTCCTTTTAATTACATGCATGATTG 57.962 33.333 32.75 8.77 0.00 2.67
32 33 8.980596 TCCTTCCTTTTAATTACATGCATGATT 58.019 29.630 32.75 22.97 0.00 2.57
33 34 8.537728 TCCTTCCTTTTAATTACATGCATGAT 57.462 30.769 32.75 18.51 0.00 2.45
34 35 7.953005 TCCTTCCTTTTAATTACATGCATGA 57.047 32.000 32.75 12.33 0.00 3.07
35 36 8.469200 TCTTCCTTCCTTTTAATTACATGCATG 58.531 33.333 25.09 25.09 0.00 4.06
36 37 8.593945 TCTTCCTTCCTTTTAATTACATGCAT 57.406 30.769 0.00 0.00 0.00 3.96
37 38 8.415950 TTCTTCCTTCCTTTTAATTACATGCA 57.584 30.769 0.00 0.00 0.00 3.96
38 39 8.523658 ACTTCTTCCTTCCTTTTAATTACATGC 58.476 33.333 0.00 0.00 0.00 4.06
41 42 9.416284 ACAACTTCTTCCTTCCTTTTAATTACA 57.584 29.630 0.00 0.00 0.00 2.41
42 43 9.678941 CACAACTTCTTCCTTCCTTTTAATTAC 57.321 33.333 0.00 0.00 0.00 1.89
43 44 9.416284 ACACAACTTCTTCCTTCCTTTTAATTA 57.584 29.630 0.00 0.00 0.00 1.40
44 45 8.197439 CACACAACTTCTTCCTTCCTTTTAATT 58.803 33.333 0.00 0.00 0.00 1.40
45 46 7.559897 TCACACAACTTCTTCCTTCCTTTTAAT 59.440 33.333 0.00 0.00 0.00 1.40
46 47 6.887545 TCACACAACTTCTTCCTTCCTTTTAA 59.112 34.615 0.00 0.00 0.00 1.52
47 48 6.419791 TCACACAACTTCTTCCTTCCTTTTA 58.580 36.000 0.00 0.00 0.00 1.52
48 49 5.261216 TCACACAACTTCTTCCTTCCTTTT 58.739 37.500 0.00 0.00 0.00 2.27
49 50 4.855340 TCACACAACTTCTTCCTTCCTTT 58.145 39.130 0.00 0.00 0.00 3.11
50 51 4.503714 TCACACAACTTCTTCCTTCCTT 57.496 40.909 0.00 0.00 0.00 3.36
51 52 4.713792 ATCACACAACTTCTTCCTTCCT 57.286 40.909 0.00 0.00 0.00 3.36
52 53 5.552178 ACTATCACACAACTTCTTCCTTCC 58.448 41.667 0.00 0.00 0.00 3.46
53 54 7.497925 AAACTATCACACAACTTCTTCCTTC 57.502 36.000 0.00 0.00 0.00 3.46
54 55 7.881775 AAAACTATCACACAACTTCTTCCTT 57.118 32.000 0.00 0.00 0.00 3.36
55 56 7.173390 GCTAAAACTATCACACAACTTCTTCCT 59.827 37.037 0.00 0.00 0.00 3.36
56 57 7.173390 AGCTAAAACTATCACACAACTTCTTCC 59.827 37.037 0.00 0.00 0.00 3.46
57 58 8.089115 AGCTAAAACTATCACACAACTTCTTC 57.911 34.615 0.00 0.00 0.00 2.87
58 59 9.726438 ATAGCTAAAACTATCACACAACTTCTT 57.274 29.630 0.00 0.00 0.00 2.52
62 63 9.547753 CCATATAGCTAAAACTATCACACAACT 57.452 33.333 0.00 0.00 34.66 3.16
63 64 8.283291 GCCATATAGCTAAAACTATCACACAAC 58.717 37.037 0.00 0.00 34.66 3.32
64 65 7.990314 TGCCATATAGCTAAAACTATCACACAA 59.010 33.333 0.00 0.00 34.66 3.33
65 66 7.441157 GTGCCATATAGCTAAAACTATCACACA 59.559 37.037 0.00 0.00 34.66 3.72
66 67 7.441157 TGTGCCATATAGCTAAAACTATCACAC 59.559 37.037 0.00 2.93 32.80 3.82
67 68 7.441157 GTGTGCCATATAGCTAAAACTATCACA 59.559 37.037 0.00 4.26 34.15 3.58
68 69 7.359264 CGTGTGCCATATAGCTAAAACTATCAC 60.359 40.741 0.00 3.06 34.66 3.06
69 70 6.645003 CGTGTGCCATATAGCTAAAACTATCA 59.355 38.462 0.00 0.00 34.66 2.15
70 71 6.645415 ACGTGTGCCATATAGCTAAAACTATC 59.355 38.462 0.00 0.00 34.66 2.08
71 72 6.423905 CACGTGTGCCATATAGCTAAAACTAT 59.576 38.462 7.58 0.00 36.77 2.12
72 73 5.751509 CACGTGTGCCATATAGCTAAAACTA 59.248 40.000 7.58 0.00 0.00 2.24
73 74 4.570772 CACGTGTGCCATATAGCTAAAACT 59.429 41.667 7.58 0.00 0.00 2.66
74 75 4.331717 ACACGTGTGCCATATAGCTAAAAC 59.668 41.667 22.71 0.00 0.00 2.43
75 76 4.331443 CACACGTGTGCCATATAGCTAAAA 59.669 41.667 33.52 0.00 39.39 1.52
76 77 3.868661 CACACGTGTGCCATATAGCTAAA 59.131 43.478 33.52 0.00 39.39 1.85
77 78 3.453424 CACACGTGTGCCATATAGCTAA 58.547 45.455 33.52 0.00 39.39 3.09
78 79 3.092334 CACACGTGTGCCATATAGCTA 57.908 47.619 33.52 0.00 39.39 3.32
79 80 1.939974 CACACGTGTGCCATATAGCT 58.060 50.000 33.52 0.00 39.39 3.32
91 92 4.914312 ACCGTAATATTTGACACACGTG 57.086 40.909 15.48 15.48 0.00 4.49
92 93 5.232463 AGAACCGTAATATTTGACACACGT 58.768 37.500 0.00 0.00 0.00 4.49
93 94 5.773239 AGAACCGTAATATTTGACACACG 57.227 39.130 0.00 0.00 0.00 4.49
94 95 8.173130 CCTTTAGAACCGTAATATTTGACACAC 58.827 37.037 0.00 0.00 0.00 3.82
95 96 7.148373 GCCTTTAGAACCGTAATATTTGACACA 60.148 37.037 0.00 0.00 0.00 3.72
96 97 7.148373 TGCCTTTAGAACCGTAATATTTGACAC 60.148 37.037 0.00 0.00 0.00 3.67
97 98 6.879993 TGCCTTTAGAACCGTAATATTTGACA 59.120 34.615 0.00 0.00 0.00 3.58
98 99 7.311364 TGCCTTTAGAACCGTAATATTTGAC 57.689 36.000 0.00 0.00 0.00 3.18
99 100 7.554835 ACATGCCTTTAGAACCGTAATATTTGA 59.445 33.333 0.00 0.00 0.00 2.69
100 101 7.703328 ACATGCCTTTAGAACCGTAATATTTG 58.297 34.615 0.00 0.00 0.00 2.32
101 102 7.875327 ACATGCCTTTAGAACCGTAATATTT 57.125 32.000 0.00 0.00 0.00 1.40
102 103 7.988599 TGTACATGCCTTTAGAACCGTAATATT 59.011 33.333 0.00 0.00 0.00 1.28
103 104 7.502696 TGTACATGCCTTTAGAACCGTAATAT 58.497 34.615 0.00 0.00 0.00 1.28
104 105 6.876155 TGTACATGCCTTTAGAACCGTAATA 58.124 36.000 0.00 0.00 0.00 0.98
105 106 5.736813 TGTACATGCCTTTAGAACCGTAAT 58.263 37.500 0.00 0.00 0.00 1.89
106 107 5.149973 TGTACATGCCTTTAGAACCGTAA 57.850 39.130 0.00 0.00 0.00 3.18
107 108 4.804868 TGTACATGCCTTTAGAACCGTA 57.195 40.909 0.00 0.00 0.00 4.02
108 109 3.688694 TGTACATGCCTTTAGAACCGT 57.311 42.857 0.00 0.00 0.00 4.83
109 110 4.201910 CCATTGTACATGCCTTTAGAACCG 60.202 45.833 0.00 0.00 0.00 4.44
110 111 4.705023 ACCATTGTACATGCCTTTAGAACC 59.295 41.667 0.00 0.00 0.00 3.62
111 112 5.897377 ACCATTGTACATGCCTTTAGAAC 57.103 39.130 0.00 0.00 0.00 3.01
112 113 6.007076 TCAACCATTGTACATGCCTTTAGAA 58.993 36.000 0.00 0.00 0.00 2.10
113 114 5.565509 TCAACCATTGTACATGCCTTTAGA 58.434 37.500 0.00 0.00 0.00 2.10
114 115 5.895636 TCAACCATTGTACATGCCTTTAG 57.104 39.130 0.00 0.00 0.00 1.85
115 116 7.831690 TCTTATCAACCATTGTACATGCCTTTA 59.168 33.333 0.00 0.00 0.00 1.85
116 117 6.663093 TCTTATCAACCATTGTACATGCCTTT 59.337 34.615 0.00 0.00 0.00 3.11
117 118 6.186957 TCTTATCAACCATTGTACATGCCTT 58.813 36.000 0.00 0.00 0.00 4.35
118 119 5.754782 TCTTATCAACCATTGTACATGCCT 58.245 37.500 0.00 0.00 0.00 4.75
119 120 6.639632 ATCTTATCAACCATTGTACATGCC 57.360 37.500 0.00 0.00 0.00 4.40
120 121 8.383318 ACTATCTTATCAACCATTGTACATGC 57.617 34.615 0.00 0.00 0.00 4.06
121 122 9.770097 AGACTATCTTATCAACCATTGTACATG 57.230 33.333 0.00 0.00 0.00 3.21
154 155 9.846248 GTCATCTCTAAATTACATGCAAAACTT 57.154 29.630 0.00 0.00 0.00 2.66
155 156 9.013229 TGTCATCTCTAAATTACATGCAAAACT 57.987 29.630 0.00 0.00 0.00 2.66
156 157 9.624697 TTGTCATCTCTAAATTACATGCAAAAC 57.375 29.630 0.00 0.00 0.00 2.43
158 159 9.844790 CTTTGTCATCTCTAAATTACATGCAAA 57.155 29.630 0.00 0.00 0.00 3.68
159 160 9.230122 TCTTTGTCATCTCTAAATTACATGCAA 57.770 29.630 0.00 0.00 0.00 4.08
160 161 8.791327 TCTTTGTCATCTCTAAATTACATGCA 57.209 30.769 0.00 0.00 0.00 3.96
176 177 9.054922 CCCATTGTAAACATTTTTCTTTGTCAT 57.945 29.630 0.00 0.00 0.00 3.06
177 178 8.043710 ACCCATTGTAAACATTTTTCTTTGTCA 58.956 29.630 0.00 0.00 0.00 3.58
178 179 8.432110 ACCCATTGTAAACATTTTTCTTTGTC 57.568 30.769 0.00 0.00 0.00 3.18
179 180 8.043710 TGACCCATTGTAAACATTTTTCTTTGT 58.956 29.630 0.00 0.00 0.00 2.83
180 181 8.430801 TGACCCATTGTAAACATTTTTCTTTG 57.569 30.769 0.00 0.00 0.00 2.77
181 182 9.271828 GATGACCCATTGTAAACATTTTTCTTT 57.728 29.630 0.00 0.00 0.00 2.52
182 183 8.650490 AGATGACCCATTGTAAACATTTTTCTT 58.350 29.630 0.00 0.00 0.00 2.52
183 184 8.193953 AGATGACCCATTGTAAACATTTTTCT 57.806 30.769 0.00 0.00 0.00 2.52
184 185 8.306761 AGAGATGACCCATTGTAAACATTTTTC 58.693 33.333 0.00 0.00 0.00 2.29
185 186 8.193953 AGAGATGACCCATTGTAAACATTTTT 57.806 30.769 0.00 0.00 0.00 1.94
186 187 7.781324 AGAGATGACCCATTGTAAACATTTT 57.219 32.000 0.00 0.00 0.00 1.82
187 188 7.781324 AAGAGATGACCCATTGTAAACATTT 57.219 32.000 0.00 0.00 0.00 2.32
188 189 8.109634 ACTAAGAGATGACCCATTGTAAACATT 58.890 33.333 0.00 0.00 0.00 2.71
189 190 7.633789 ACTAAGAGATGACCCATTGTAAACAT 58.366 34.615 0.00 0.00 0.00 2.71
190 191 7.016153 ACTAAGAGATGACCCATTGTAAACA 57.984 36.000 0.00 0.00 0.00 2.83
191 192 7.331791 AGACTAAGAGATGACCCATTGTAAAC 58.668 38.462 0.00 0.00 0.00 2.01
192 193 7.496346 AGACTAAGAGATGACCCATTGTAAA 57.504 36.000 0.00 0.00 0.00 2.01
193 194 7.496346 AAGACTAAGAGATGACCCATTGTAA 57.504 36.000 0.00 0.00 0.00 2.41
194 195 8.783660 ATAAGACTAAGAGATGACCCATTGTA 57.216 34.615 0.00 0.00 0.00 2.41
195 196 7.566879 AGATAAGACTAAGAGATGACCCATTGT 59.433 37.037 0.00 0.00 0.00 2.71
196 197 7.961351 AGATAAGACTAAGAGATGACCCATTG 58.039 38.462 0.00 0.00 0.00 2.82
197 198 8.560124 AAGATAAGACTAAGAGATGACCCATT 57.440 34.615 0.00 0.00 0.00 3.16
198 199 7.786943 TGAAGATAAGACTAAGAGATGACCCAT 59.213 37.037 0.00 0.00 0.00 4.00
199 200 7.126061 TGAAGATAAGACTAAGAGATGACCCA 58.874 38.462 0.00 0.00 0.00 4.51
200 201 7.589958 TGAAGATAAGACTAAGAGATGACCC 57.410 40.000 0.00 0.00 0.00 4.46
225 226 9.623000 ACCGTATTTTTAGGAATTGCTAGTTAT 57.377 29.630 6.79 4.85 0.00 1.89
226 227 8.885722 CACCGTATTTTTAGGAATTGCTAGTTA 58.114 33.333 6.79 0.00 0.00 2.24
227 228 7.608761 TCACCGTATTTTTAGGAATTGCTAGTT 59.391 33.333 6.79 0.00 0.00 2.24
228 229 7.107542 TCACCGTATTTTTAGGAATTGCTAGT 58.892 34.615 6.79 0.00 0.00 2.57
229 230 7.548196 TCACCGTATTTTTAGGAATTGCTAG 57.452 36.000 6.79 0.00 0.00 3.42
230 231 7.925043 TTCACCGTATTTTTAGGAATTGCTA 57.075 32.000 2.04 2.04 0.00 3.49
231 232 6.827586 TTCACCGTATTTTTAGGAATTGCT 57.172 33.333 4.41 4.41 0.00 3.91
232 233 6.864165 TGTTTCACCGTATTTTTAGGAATTGC 59.136 34.615 0.00 0.00 0.00 3.56
233 234 8.980143 ATGTTTCACCGTATTTTTAGGAATTG 57.020 30.769 0.00 0.00 0.00 2.32
269 270 9.723601 ATTTAAGATAAGGCAAGAGATGATCTC 57.276 33.333 14.47 14.47 43.70 2.75
296 297 9.487790 CTCATAAGAAAAGTCTTGTCTTCTCTT 57.512 33.333 19.41 7.94 44.12 2.85
297 298 8.646900 ACTCATAAGAAAAGTCTTGTCTTCTCT 58.353 33.333 19.41 5.56 44.12 3.10
298 299 8.825667 ACTCATAAGAAAAGTCTTGTCTTCTC 57.174 34.615 19.41 0.00 44.12 2.87
299 300 9.267084 GAACTCATAAGAAAAGTCTTGTCTTCT 57.733 33.333 19.41 9.06 44.12 2.85
300 301 9.267084 AGAACTCATAAGAAAAGTCTTGTCTTC 57.733 33.333 19.41 5.91 44.12 2.87
301 302 9.267084 GAGAACTCATAAGAAAAGTCTTGTCTT 57.733 33.333 19.68 19.68 44.12 3.01
302 303 8.646900 AGAGAACTCATAAGAAAAGTCTTGTCT 58.353 33.333 0.00 0.00 44.12 3.41
303 304 8.825667 AGAGAACTCATAAGAAAAGTCTTGTC 57.174 34.615 4.64 0.00 44.12 3.18
304 305 8.646900 AGAGAGAACTCATAAGAAAAGTCTTGT 58.353 33.333 4.64 0.00 43.26 3.16
305 306 9.139174 GAGAGAGAACTCATAAGAAAAGTCTTG 57.861 37.037 4.64 0.00 43.26 3.02
306 307 8.311109 GGAGAGAGAACTCATAAGAAAAGTCTT 58.689 37.037 4.64 0.00 44.36 3.01
307 308 7.673926 AGGAGAGAGAACTCATAAGAAAAGTCT 59.326 37.037 4.64 0.00 44.79 3.24
308 309 7.836842 AGGAGAGAGAACTCATAAGAAAAGTC 58.163 38.462 4.64 0.00 44.79 3.01
309 310 7.093509 GGAGGAGAGAGAACTCATAAGAAAAGT 60.094 40.741 4.64 0.00 44.79 2.66
310 311 7.093552 TGGAGGAGAGAGAACTCATAAGAAAAG 60.094 40.741 4.64 0.00 44.79 2.27
311 312 6.726299 TGGAGGAGAGAGAACTCATAAGAAAA 59.274 38.462 4.64 0.00 44.79 2.29
312 313 6.153680 GTGGAGGAGAGAGAACTCATAAGAAA 59.846 42.308 4.64 0.00 44.79 2.52
313 314 5.654650 GTGGAGGAGAGAGAACTCATAAGAA 59.345 44.000 4.64 0.00 44.79 2.52
314 315 5.197451 GTGGAGGAGAGAGAACTCATAAGA 58.803 45.833 4.64 0.00 44.79 2.10
315 316 4.340950 GGTGGAGGAGAGAGAACTCATAAG 59.659 50.000 4.64 0.00 44.79 1.73
316 317 4.017037 AGGTGGAGGAGAGAGAACTCATAA 60.017 45.833 4.64 0.00 44.79 1.90
317 318 3.529734 AGGTGGAGGAGAGAGAACTCATA 59.470 47.826 4.64 0.00 44.79 2.15
318 319 2.314549 AGGTGGAGGAGAGAGAACTCAT 59.685 50.000 4.64 0.00 44.79 2.90
319 320 1.713647 AGGTGGAGGAGAGAGAACTCA 59.286 52.381 4.64 0.00 44.79 3.41
320 321 2.291282 TGAGGTGGAGGAGAGAGAACTC 60.291 54.545 0.00 0.00 42.90 3.01
321 322 1.713647 TGAGGTGGAGGAGAGAGAACT 59.286 52.381 0.00 0.00 0.00 3.01
322 323 2.223803 TGAGGTGGAGGAGAGAGAAC 57.776 55.000 0.00 0.00 0.00 3.01
323 324 2.313041 TGATGAGGTGGAGGAGAGAGAA 59.687 50.000 0.00 0.00 0.00 2.87
324 325 1.925959 TGATGAGGTGGAGGAGAGAGA 59.074 52.381 0.00 0.00 0.00 3.10
325 326 2.450867 TGATGAGGTGGAGGAGAGAG 57.549 55.000 0.00 0.00 0.00 3.20
326 327 3.411454 AATGATGAGGTGGAGGAGAGA 57.589 47.619 0.00 0.00 0.00 3.10
327 328 5.822132 ATAAATGATGAGGTGGAGGAGAG 57.178 43.478 0.00 0.00 0.00 3.20
328 329 5.907662 AGAATAAATGATGAGGTGGAGGAGA 59.092 40.000 0.00 0.00 0.00 3.71
329 330 6.185114 AGAATAAATGATGAGGTGGAGGAG 57.815 41.667 0.00 0.00 0.00 3.69
330 331 6.615316 TGTAGAATAAATGATGAGGTGGAGGA 59.385 38.462 0.00 0.00 0.00 3.71
331 332 6.830912 TGTAGAATAAATGATGAGGTGGAGG 58.169 40.000 0.00 0.00 0.00 4.30
332 333 7.389884 CCATGTAGAATAAATGATGAGGTGGAG 59.610 40.741 0.00 0.00 38.63 3.86
333 334 7.226441 CCATGTAGAATAAATGATGAGGTGGA 58.774 38.462 0.00 0.00 38.63 4.02
334 335 6.072286 GCCATGTAGAATAAATGATGAGGTGG 60.072 42.308 0.00 0.00 38.63 4.61
335 336 6.487668 TGCCATGTAGAATAAATGATGAGGTG 59.512 38.462 0.00 0.00 38.63 4.00
336 337 6.488006 GTGCCATGTAGAATAAATGATGAGGT 59.512 38.462 0.00 0.00 38.63 3.85
337 338 6.713903 AGTGCCATGTAGAATAAATGATGAGG 59.286 38.462 0.00 0.00 38.63 3.86
338 339 7.094890 GGAGTGCCATGTAGAATAAATGATGAG 60.095 40.741 0.00 0.00 38.63 2.90
339 340 6.712095 GGAGTGCCATGTAGAATAAATGATGA 59.288 38.462 0.00 0.00 38.63 2.92
340 341 6.713903 AGGAGTGCCATGTAGAATAAATGATG 59.286 38.462 0.00 0.00 38.63 3.07
341 342 6.845908 AGGAGTGCCATGTAGAATAAATGAT 58.154 36.000 0.00 0.00 38.63 2.45
342 343 6.252599 AGGAGTGCCATGTAGAATAAATGA 57.747 37.500 0.00 0.00 38.63 2.57
343 344 7.933577 TCTTAGGAGTGCCATGTAGAATAAATG 59.066 37.037 0.00 0.00 36.01 2.32
344 345 8.034313 TCTTAGGAGTGCCATGTAGAATAAAT 57.966 34.615 0.00 0.00 36.29 1.40
345 346 7.432148 TCTTAGGAGTGCCATGTAGAATAAA 57.568 36.000 0.00 0.00 36.29 1.40
346 347 7.618019 ATCTTAGGAGTGCCATGTAGAATAA 57.382 36.000 0.00 0.00 36.29 1.40
347 348 7.093727 GCTATCTTAGGAGTGCCATGTAGAATA 60.094 40.741 0.00 0.00 36.29 1.75
348 349 6.295575 GCTATCTTAGGAGTGCCATGTAGAAT 60.296 42.308 0.00 0.00 36.29 2.40
349 350 5.011125 GCTATCTTAGGAGTGCCATGTAGAA 59.989 44.000 0.00 0.00 36.29 2.10
350 351 4.524714 GCTATCTTAGGAGTGCCATGTAGA 59.475 45.833 0.00 0.00 36.29 2.59
351 352 4.281941 TGCTATCTTAGGAGTGCCATGTAG 59.718 45.833 0.00 0.00 36.29 2.74
352 353 4.223144 TGCTATCTTAGGAGTGCCATGTA 58.777 43.478 0.00 0.00 36.29 2.29
353 354 3.041211 TGCTATCTTAGGAGTGCCATGT 58.959 45.455 0.00 0.00 36.29 3.21
354 355 3.758755 TGCTATCTTAGGAGTGCCATG 57.241 47.619 0.00 0.00 36.29 3.66
355 356 3.906218 TGATGCTATCTTAGGAGTGCCAT 59.094 43.478 0.00 0.00 36.29 4.40
356 357 3.308401 TGATGCTATCTTAGGAGTGCCA 58.692 45.455 0.00 0.00 36.29 4.92
357 358 4.550076 ATGATGCTATCTTAGGAGTGCC 57.450 45.455 0.70 0.00 0.00 5.01
358 359 5.303971 ACAATGATGCTATCTTAGGAGTGC 58.696 41.667 0.00 0.00 0.00 4.40
359 360 7.436933 TGTACAATGATGCTATCTTAGGAGTG 58.563 38.462 0.00 0.00 0.00 3.51
360 361 7.603180 TGTACAATGATGCTATCTTAGGAGT 57.397 36.000 0.00 0.00 0.00 3.85
361 362 7.064371 GCATGTACAATGATGCTATCTTAGGAG 59.936 40.741 11.12 0.00 41.52 3.69
362 363 6.875726 GCATGTACAATGATGCTATCTTAGGA 59.124 38.462 11.12 0.00 41.52 2.94
363 364 6.093219 GGCATGTACAATGATGCTATCTTAGG 59.907 42.308 16.47 0.00 43.77 2.69
364 365 6.093219 GGGCATGTACAATGATGCTATCTTAG 59.907 42.308 16.47 0.00 43.77 2.18
365 366 5.939883 GGGCATGTACAATGATGCTATCTTA 59.060 40.000 16.47 0.00 43.77 2.10
366 367 4.763793 GGGCATGTACAATGATGCTATCTT 59.236 41.667 16.47 0.00 43.77 2.40
367 368 4.042560 AGGGCATGTACAATGATGCTATCT 59.957 41.667 16.47 10.22 43.77 1.98
368 369 4.330250 AGGGCATGTACAATGATGCTATC 58.670 43.478 16.47 8.57 43.77 2.08
369 370 4.377762 AGGGCATGTACAATGATGCTAT 57.622 40.909 16.47 5.35 43.77 2.97
370 371 3.862877 AGGGCATGTACAATGATGCTA 57.137 42.857 16.47 0.00 43.77 3.49
371 372 2.742428 AGGGCATGTACAATGATGCT 57.258 45.000 16.47 0.00 43.77 3.79
372 373 6.573664 TTATTAGGGCATGTACAATGATGC 57.426 37.500 10.12 10.12 43.60 3.91
375 376 9.461312 GGATTATTATTAGGGCATGTACAATGA 57.539 33.333 0.00 0.00 0.00 2.57
376 377 9.241919 TGGATTATTATTAGGGCATGTACAATG 57.758 33.333 0.00 0.12 0.00 2.82
377 378 9.466497 CTGGATTATTATTAGGGCATGTACAAT 57.534 33.333 0.00 0.00 0.00 2.71
378 379 8.664992 TCTGGATTATTATTAGGGCATGTACAA 58.335 33.333 0.00 0.00 0.00 2.41
379 380 8.213489 TCTGGATTATTATTAGGGCATGTACA 57.787 34.615 0.00 0.00 0.00 2.90
380 381 9.515226 TTTCTGGATTATTATTAGGGCATGTAC 57.485 33.333 0.00 0.00 0.00 2.90
381 382 9.739276 CTTTCTGGATTATTATTAGGGCATGTA 57.261 33.333 0.00 0.00 0.00 2.29
382 383 8.227507 ACTTTCTGGATTATTATTAGGGCATGT 58.772 33.333 0.00 0.00 0.00 3.21
383 384 8.641498 ACTTTCTGGATTATTATTAGGGCATG 57.359 34.615 0.00 0.00 0.00 4.06
385 386 9.569122 GTTACTTTCTGGATTATTATTAGGGCA 57.431 33.333 0.00 0.00 0.00 5.36
386 387 9.569122 TGTTACTTTCTGGATTATTATTAGGGC 57.431 33.333 0.00 0.00 0.00 5.19
422 423 6.436843 TCCGAGCATATTCTTTCTTTTTCC 57.563 37.500 0.00 0.00 0.00 3.13
424 425 5.163612 GGCTCCGAGCATATTCTTTCTTTTT 60.164 40.000 21.76 0.00 44.75 1.94
429 430 3.118905 AGGCTCCGAGCATATTCTTTC 57.881 47.619 21.76 1.31 44.75 2.62
432 433 2.224402 GGAAAGGCTCCGAGCATATTCT 60.224 50.000 21.76 6.51 44.75 2.40
433 434 2.147150 GGAAAGGCTCCGAGCATATTC 58.853 52.381 21.76 19.09 44.75 1.75
488 491 1.680338 ACAATATCTCGCCCCAAAGC 58.320 50.000 0.00 0.00 0.00 3.51
519 522 2.796032 GCAAATGCTAGAAATCGCCCAC 60.796 50.000 0.00 0.00 38.21 4.61
555 558 0.321996 GCCCACGAGAGAAAAGAGGT 59.678 55.000 0.00 0.00 0.00 3.85
646 2138 9.561069 TCAGAAATACTAGTTTTCTTTCTGCTT 57.439 29.630 25.88 9.63 46.25 3.91
647 2139 9.561069 TTCAGAAATACTAGTTTTCTTTCTGCT 57.439 29.630 25.88 10.08 46.25 4.24
651 2143 9.894783 GGGTTTCAGAAATACTAGTTTTCTTTC 57.105 33.333 20.81 15.49 40.53 2.62
652 2144 8.857098 GGGGTTTCAGAAATACTAGTTTTCTTT 58.143 33.333 20.81 9.76 40.53 2.52
653 2145 8.225416 AGGGGTTTCAGAAATACTAGTTTTCTT 58.775 33.333 20.81 10.62 40.53 2.52
654 2146 7.756614 AGGGGTTTCAGAAATACTAGTTTTCT 58.243 34.615 19.04 19.04 42.63 2.52
655 2147 7.997773 AGGGGTTTCAGAAATACTAGTTTTC 57.002 36.000 0.00 10.93 34.08 2.29
656 2148 9.871175 TTTAGGGGTTTCAGAAATACTAGTTTT 57.129 29.630 0.00 0.00 0.00 2.43
657 2149 9.871175 TTTTAGGGGTTTCAGAAATACTAGTTT 57.129 29.630 0.00 0.00 0.00 2.66
658 2150 9.871175 TTTTTAGGGGTTTCAGAAATACTAGTT 57.129 29.630 0.00 0.00 0.00 2.24
731 2223 0.895530 GTGGACCCAGATCTCGTTGA 59.104 55.000 0.00 0.00 0.00 3.18
834 2326 4.717313 ACCCTTTCCTTCCGCCGC 62.717 66.667 0.00 0.00 0.00 6.53
896 2388 0.983905 GGGTTGGGTTGGGTTGGTTT 60.984 55.000 0.00 0.00 0.00 3.27
901 2393 4.227583 CCGGGGTTGGGTTGGGTT 62.228 66.667 0.00 0.00 0.00 4.11
935 2427 1.212935 AGTAAATCGCAGGGGATTGCT 59.787 47.619 11.66 10.22 41.90 3.91
1059 2566 2.128507 CAGGGAGAGAGGCGGTACC 61.129 68.421 0.16 0.16 39.61 3.34
1098 2609 1.659098 CACGAAGCTAATCCGTCCAAC 59.341 52.381 0.00 0.00 33.96 3.77
1191 2749 2.499685 CTACAGCCCGTAGCCCAC 59.500 66.667 0.00 0.00 45.47 4.61
1197 2755 1.651240 GAGCGACACTACAGCCCGTA 61.651 60.000 0.00 0.00 0.00 4.02
1198 2756 2.989824 AGCGACACTACAGCCCGT 60.990 61.111 0.00 0.00 0.00 5.28
1228 2786 6.713762 ACCACTGAACATTTGAAGATTTGA 57.286 33.333 0.00 0.00 0.00 2.69
1282 2841 2.224499 ACATGCAAAATTTCCCCACCAC 60.224 45.455 0.00 0.00 0.00 4.16
1302 2861 0.883833 CTGCCTGAATCCAACCACAC 59.116 55.000 0.00 0.00 0.00 3.82
1315 2874 3.005472 CCTGCCATGAATTTATCTGCCTG 59.995 47.826 0.00 0.00 0.00 4.85
1316 2875 3.228453 CCTGCCATGAATTTATCTGCCT 58.772 45.455 0.00 0.00 0.00 4.75
1321 2880 4.038402 CCTGAACCCTGCCATGAATTTATC 59.962 45.833 0.00 0.00 0.00 1.75
1345 2904 5.467399 TCGTAATGTCTGACGAACCAAAAAT 59.533 36.000 2.98 0.00 44.56 1.82
1402 2961 3.776616 CTTCCTTAGCAGCCCTGAG 57.223 57.895 0.00 0.00 0.00 3.35
1413 2972 3.521727 AGGTCCTTTCAGAGCTTCCTTA 58.478 45.455 0.00 0.00 41.75 2.69
1526 3098 4.156664 ACGAATCTACATAATCGACCCG 57.843 45.455 0.64 0.00 38.59 5.28
1532 3104 6.451393 AGCTGAGGAACGAATCTACATAATC 58.549 40.000 0.00 0.00 0.00 1.75
1562 3134 2.975410 ACACAATGACATGTCTTGCG 57.025 45.000 25.55 20.49 0.00 4.85
1575 3147 3.343617 CTTCCGTGGAACCATACACAAT 58.656 45.455 0.00 0.00 37.45 2.71
1577 3149 1.002659 CCTTCCGTGGAACCATACACA 59.997 52.381 0.00 0.00 37.45 3.72
1592 3164 5.294552 GCACTAACTGTATGTTGATCCTTCC 59.705 44.000 0.00 0.00 39.55 3.46
1633 3223 4.384868 GCCCTACTGGTAAAAATGCTAGGA 60.385 45.833 0.00 0.00 36.04 2.94
1642 3232 4.855298 ATAGCAAGCCCTACTGGTAAAA 57.145 40.909 0.00 0.00 36.04 1.52
1697 3287 1.195115 TCATCAGAGGGCACTGGTAC 58.805 55.000 0.00 0.00 38.31 3.34
1737 3327 4.627284 TTATGGTCGTATAATGTGGGGG 57.373 45.455 0.00 0.00 0.00 5.40
1776 3366 7.873719 TGTCACGAATGTCCCAAATATAAAT 57.126 32.000 0.00 0.00 0.00 1.40
1845 3440 7.116662 CAGCTAAAATGTTCTTGCATTTGCTAA 59.883 33.333 12.64 0.00 45.17 3.09
1942 3537 6.403866 AAATCCACAAGTTGACTGCATTAA 57.596 33.333 10.54 0.00 0.00 1.40
2003 3598 4.136796 GGGCCTGCAAGAAAAAGAAAAAT 58.863 39.130 0.84 0.00 34.07 1.82
2004 3599 3.054802 TGGGCCTGCAAGAAAAAGAAAAA 60.055 39.130 4.53 0.00 34.07 1.94
2009 3604 2.827921 ACTATGGGCCTGCAAGAAAAAG 59.172 45.455 4.53 0.00 34.07 2.27
2147 3743 3.747193 CATACCTGCAAACGTGTCAATC 58.253 45.455 0.00 0.00 0.00 2.67
2388 3984 6.014584 AGGTGATCATTACAGTAAGACACACA 60.015 38.462 17.32 5.39 0.00 3.72
2417 4013 4.222124 AGAAATCGCAGGTCATAAGGTT 57.778 40.909 0.00 0.00 0.00 3.50
2419 4015 6.677781 TTAAAGAAATCGCAGGTCATAAGG 57.322 37.500 0.00 0.00 0.00 2.69
2459 4060 8.548880 TTATACTACCAAAGCAGAGAAGGTAT 57.451 34.615 0.00 0.00 34.59 2.73
2883 4484 0.381801 GCCACTTGCCACCATATTCG 59.618 55.000 0.00 0.00 0.00 3.34
2936 4537 6.043411 ACTTTAATCGCTGAGGAAGTATCAC 58.957 40.000 0.00 0.00 0.00 3.06
2999 4600 6.458342 CCCTCGACACTTAATGCTAAAATTCC 60.458 42.308 0.00 0.00 0.00 3.01
3171 4772 8.418662 TCACTTTTCTGTAAAGAGTAGCTTACA 58.581 33.333 12.82 0.00 45.00 2.41
3255 4858 6.183810 ACTTAACAAGCCAACTTACTAGGT 57.816 37.500 0.00 0.00 33.74 3.08
3284 4887 2.291190 TGCCGCAAGTTTAGTGTTAACC 59.709 45.455 2.48 0.00 0.00 2.85
3339 4943 5.269189 TGTTCACTATACTCAGGATGGACA 58.731 41.667 0.00 0.00 36.16 4.02
3450 5054 5.880887 GGTTACTGGAAATAGACAAAGGGAG 59.119 44.000 0.00 0.00 0.00 4.30
3514 5118 2.009774 CCCTAAATCAGGTCACTTGCG 58.990 52.381 0.00 0.00 43.80 4.85
3530 5147 5.027460 TGTAGAAACTGCATTACCTCCCTA 58.973 41.667 0.00 0.00 0.00 3.53
3541 5158 5.960113 ACAAAAACACATGTAGAAACTGCA 58.040 33.333 0.00 0.00 0.00 4.41
3615 5232 3.562609 GGTGGGGCACTTATTTCCACTTA 60.563 47.826 10.11 0.00 45.11 2.24
3689 5309 4.264543 AGATGCTAAACGCGAAATTGAG 57.735 40.909 15.93 0.00 43.27 3.02
3716 5381 4.466567 TTGTACTGTCGCATCAAACAAG 57.533 40.909 0.00 0.00 0.00 3.16
3722 5387 5.415221 TGAACATATTGTACTGTCGCATCA 58.585 37.500 0.00 0.00 0.00 3.07
3723 5388 5.966636 TGAACATATTGTACTGTCGCATC 57.033 39.130 0.00 0.00 0.00 3.91
3728 5393 4.808895 TCCGCATGAACATATTGTACTGTC 59.191 41.667 0.00 0.00 0.00 3.51
3734 5399 7.750229 AGATTAATCCGCATGAACATATTGT 57.250 32.000 11.92 0.00 0.00 2.71
3832 5497 2.606587 GCCCTGGCTCTCCTTTCCA 61.607 63.158 0.00 0.00 38.26 3.53
3931 5596 4.754618 TGAACATACATTGTGTCACCTGAC 59.245 41.667 0.00 0.00 44.97 3.51
4061 5726 4.156477 CGATCCTCTAGAATTCTCCCCTT 58.844 47.826 12.24 0.00 0.00 3.95
4194 5885 3.965292 CTGACTGCCAGAATGCTATTG 57.035 47.619 0.00 0.00 45.78 1.90
4244 5935 5.471797 TCATTTTCTCGTTCATTTGCCAGTA 59.528 36.000 0.00 0.00 0.00 2.74
4260 5951 5.813513 AAATCCAGTTGCCTTCATTTTCT 57.186 34.783 0.00 0.00 0.00 2.52
4261 5952 7.378181 TCTTAAATCCAGTTGCCTTCATTTTC 58.622 34.615 0.00 0.00 0.00 2.29
4275 5967 3.614092 TGAGCCAGCTTCTTAAATCCAG 58.386 45.455 0.00 0.00 0.00 3.86
4282 5974 1.583556 TCCCATGAGCCAGCTTCTTA 58.416 50.000 0.00 0.00 0.00 2.10
4305 5997 9.182214 ACGGAGAATACAATACTTCTAAGTGTA 57.818 33.333 5.62 0.69 40.07 2.90
4306 5998 8.064336 ACGGAGAATACAATACTTCTAAGTGT 57.936 34.615 5.62 0.00 40.07 3.55
4307 5999 8.928270 AACGGAGAATACAATACTTCTAAGTG 57.072 34.615 5.62 0.00 40.07 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.