Multiple sequence alignment - TraesCS6A01G305600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G305600 chr6A 100.000 4450 0 0 1 4450 538493465 538497914 0.000000e+00 8218.0
1 TraesCS6A01G305600 chr6A 96.651 209 7 0 1 209 538488546 538488754 9.160000e-92 348.0
2 TraesCS6A01G305600 chr6B 90.329 1913 94 49 209 2082 585901126 585902986 0.000000e+00 2423.0
3 TraesCS6A01G305600 chr6B 90.966 963 62 13 2965 3905 585904539 585905498 0.000000e+00 1273.0
4 TraesCS6A01G305600 chr6B 91.723 447 19 7 2146 2584 585902996 585903432 4.920000e-169 604.0
5 TraesCS6A01G305600 chr6B 83.519 449 53 9 4020 4448 585905489 585905936 2.490000e-107 399.0
6 TraesCS6A01G305600 chr6B 89.404 302 20 3 2661 2955 585903442 585903738 1.960000e-98 370.0
7 TraesCS6A01G305600 chr6D 89.647 1787 140 20 2593 4362 392515167 392516925 0.000000e+00 2233.0
8 TraesCS6A01G305600 chr6D 90.515 1339 65 27 826 2122 392513069 392514387 0.000000e+00 1712.0
9 TraesCS6A01G305600 chr6D 94.305 439 17 5 2146 2583 392514375 392514806 0.000000e+00 665.0
10 TraesCS6A01G305600 chr6D 88.204 373 20 11 209 580 392512351 392512700 1.480000e-114 424.0
11 TraesCS6A01G305600 chr6D 96.000 50 2 0 580 629 392512757 392512806 1.030000e-11 82.4
12 TraesCS6A01G305600 chr5A 96.651 209 7 0 1 209 129819032 129818824 9.160000e-92 348.0
13 TraesCS6A01G305600 chr5A 96.651 209 6 1 1 209 572954696 572954903 3.290000e-91 346.0
14 TraesCS6A01G305600 chr5A 96.618 207 7 0 3 209 704472267 704472473 1.190000e-90 344.0
15 TraesCS6A01G305600 chr5A 95.161 62 3 0 1181 1242 535240058 535240119 1.020000e-16 99.0
16 TraesCS6A01G305600 chr5A 84.932 73 11 0 1449 1521 495865341 495865269 1.720000e-09 75.0
17 TraesCS6A01G305600 chr2A 96.651 209 7 0 1 209 705489984 705490192 9.160000e-92 348.0
18 TraesCS6A01G305600 chr2A 96.172 209 8 0 1 209 526332962 526333170 4.260000e-90 342.0
19 TraesCS6A01G305600 chr2A 89.744 78 8 0 1447 1524 700976058 700976135 2.830000e-17 100.0
20 TraesCS6A01G305600 chr7A 96.190 210 8 0 1 210 5015799 5015590 1.190000e-90 344.0
21 TraesCS6A01G305600 chr7A 81.818 110 15 5 3825 3932 556508964 556509070 2.210000e-13 87.9
22 TraesCS6A01G305600 chr4A 96.190 210 8 0 1 210 597215287 597215496 1.190000e-90 344.0
23 TraesCS6A01G305600 chr1A 96.190 210 8 0 1 210 278277124 278277333 1.190000e-90 344.0
24 TraesCS6A01G305600 chr3D 75.728 412 90 8 3038 3444 170557720 170557314 9.760000e-47 198.0
25 TraesCS6A01G305600 chr3D 75.495 404 87 10 3038 3435 170659960 170660357 2.110000e-43 187.0
26 TraesCS6A01G305600 chr3D 86.301 146 19 1 2409 2554 170557868 170557724 1.660000e-34 158.0
27 TraesCS6A01G305600 chr3D 85.616 146 20 1 2404 2549 170564209 170564065 7.710000e-33 152.0
28 TraesCS6A01G305600 chr3D 84.768 151 21 2 2404 2554 170659808 170659956 2.770000e-32 150.0
29 TraesCS6A01G305600 chr3B 75.485 412 91 8 3038 3444 245963706 245963300 4.540000e-45 193.0
30 TraesCS6A01G305600 chr3B 85.816 141 20 0 2409 2549 245963854 245963714 2.770000e-32 150.0
31 TraesCS6A01G305600 chr3B 84.247 146 22 1 2404 2549 246129360 246129504 1.670000e-29 141.0
32 TraesCS6A01G305600 chr3A 75.495 404 87 10 3038 3435 208222414 208222811 2.110000e-43 187.0
33 TraesCS6A01G305600 chr3A 82.286 175 27 4 2383 2555 208089570 208089398 9.970000e-32 148.0
34 TraesCS6A01G305600 chr3A 84.932 146 21 1 2404 2549 208222262 208222406 3.590000e-31 147.0
35 TraesCS6A01G305600 chr5D 95.161 62 3 0 1181 1242 421661826 421661887 1.020000e-16 99.0
36 TraesCS6A01G305600 chr5B 95.161 62 3 0 1181 1242 508065198 508065259 1.020000e-16 99.0
37 TraesCS6A01G305600 chrUn 84.000 100 14 2 1426 1524 124826941 124827039 1.320000e-15 95.3
38 TraesCS6A01G305600 chrUn 82.243 107 17 2 1429 1534 124710205 124710100 1.700000e-14 91.6
39 TraesCS6A01G305600 chr2B 88.462 78 9 0 1447 1524 669649077 669649154 1.320000e-15 95.3
40 TraesCS6A01G305600 chr4B 88.525 61 5 2 1450 1509 633466465 633466524 6.170000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G305600 chr6A 538493465 538497914 4449 False 8218.00 8218 100.0000 1 4450 1 chr6A.!!$F2 4449
1 TraesCS6A01G305600 chr6B 585901126 585905936 4810 False 1013.80 2423 89.1882 209 4448 5 chr6B.!!$F1 4239
2 TraesCS6A01G305600 chr6D 392512351 392516925 4574 False 1023.28 2233 91.7342 209 4362 5 chr6D.!!$F1 4153

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.174845 CATCCTCGGCGTTGAAGGTA 59.825 55.0 6.85 0.0 0.00 3.08 F
183 184 0.175073 ATCCTCGGCGTTGAAGGTAC 59.825 55.0 6.85 0.0 0.00 3.34 F
190 191 0.598158 GCGTTGAAGGTACACGGTGA 60.598 55.0 16.29 0.0 0.00 4.02 F
1242 1485 0.666577 ACTGCTTCGTCAAGGTACGC 60.667 55.0 0.00 0.0 42.56 4.42 F
1674 1923 0.034059 CTGTTCCTCTTGCTGTCCGT 59.966 55.0 0.00 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1242 1485 0.250858 TGAGGGTGATGTGGTTGCTG 60.251 55.000 0.0 0.0 0.00 4.41 R
1312 1555 0.499761 CACACGTGTAAACGACGTCC 59.500 55.000 22.9 0.0 46.85 4.79 R
1571 1820 0.549950 CAGATTCATGGGGCTCTGGT 59.450 55.000 0.0 0.0 33.15 4.00 R
2631 3257 0.030195 TGGAGCCCCCATCACATCTA 60.030 55.000 0.0 0.0 40.82 1.98 R
3651 5085 1.268999 TGCCAACGCAGTGTTTTCATC 60.269 47.619 0.0 0.0 45.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.222847 CTCTAGGGGCGGGCGAAC 62.223 72.222 0.00 0.00 0.00 3.95
29 30 4.525949 GGCGAACCGACCTAGGGC 62.526 72.222 14.81 9.80 35.02 5.19
30 31 3.766691 GCGAACCGACCTAGGGCA 61.767 66.667 16.92 0.00 35.02 5.36
31 32 2.494918 CGAACCGACCTAGGGCAG 59.505 66.667 16.92 5.68 35.02 4.85
32 33 2.187163 GAACCGACCTAGGGCAGC 59.813 66.667 16.92 0.00 35.02 5.25
33 34 3.387225 GAACCGACCTAGGGCAGCC 62.387 68.421 16.92 1.26 35.02 4.85
65 66 3.075641 GTCCAGACGGGGTCCCTC 61.076 72.222 8.15 0.00 37.22 4.30
66 67 3.273654 TCCAGACGGGGTCCCTCT 61.274 66.667 8.15 0.10 37.22 3.69
67 68 2.760385 CCAGACGGGGTCCCTCTC 60.760 72.222 8.15 2.49 32.18 3.20
68 69 3.141488 CAGACGGGGTCCCTCTCG 61.141 72.222 8.15 5.63 32.18 4.04
69 70 4.444081 AGACGGGGTCCCTCTCGG 62.444 72.222 8.15 0.00 32.18 4.63
90 91 3.633116 CGTGGGGTTTCGGGTCCT 61.633 66.667 0.00 0.00 0.00 3.85
91 92 2.033602 GTGGGGTTTCGGGTCCTG 59.966 66.667 0.00 0.00 0.00 3.86
92 93 2.122324 TGGGGTTTCGGGTCCTGA 60.122 61.111 0.00 0.00 0.00 3.86
93 94 1.770927 TGGGGTTTCGGGTCCTGAA 60.771 57.895 9.23 9.23 0.00 3.02
94 95 1.354168 TGGGGTTTCGGGTCCTGAAA 61.354 55.000 20.14 20.14 33.18 2.69
95 96 0.178984 GGGGTTTCGGGTCCTGAAAA 60.179 55.000 24.60 8.89 37.10 2.29
96 97 1.244816 GGGTTTCGGGTCCTGAAAAG 58.755 55.000 24.60 0.00 37.10 2.27
97 98 0.596577 GGTTTCGGGTCCTGAAAAGC 59.403 55.000 24.60 14.54 37.10 3.51
98 99 1.314730 GTTTCGGGTCCTGAAAAGCA 58.685 50.000 24.60 3.06 37.10 3.91
99 100 1.001706 GTTTCGGGTCCTGAAAAGCAC 60.002 52.381 24.60 11.56 37.10 4.40
100 101 0.536460 TTCGGGTCCTGAAAAGCACC 60.536 55.000 10.94 0.00 0.00 5.01
101 102 1.971695 CGGGTCCTGAAAAGCACCC 60.972 63.158 0.00 0.00 44.67 4.61
102 103 1.971695 GGGTCCTGAAAAGCACCCG 60.972 63.158 0.00 0.00 39.32 5.28
103 104 2.626780 GGTCCTGAAAAGCACCCGC 61.627 63.158 0.00 0.00 38.99 6.13
104 105 2.282180 TCCTGAAAAGCACCCGCC 60.282 61.111 0.00 0.00 39.83 6.13
105 106 3.737172 CCTGAAAAGCACCCGCCG 61.737 66.667 0.00 0.00 39.83 6.46
106 107 3.737172 CTGAAAAGCACCCGCCGG 61.737 66.667 0.00 0.00 39.83 6.13
107 108 4.257654 TGAAAAGCACCCGCCGGA 62.258 61.111 5.05 0.00 39.83 5.14
108 109 2.750237 GAAAAGCACCCGCCGGAT 60.750 61.111 5.05 0.00 39.83 4.18
109 110 2.282887 AAAAGCACCCGCCGGATT 60.283 55.556 5.05 0.00 39.83 3.01
110 111 2.542211 GAAAAGCACCCGCCGGATTG 62.542 60.000 5.05 1.86 39.83 2.67
114 115 3.814268 CACCCGCCGGATTGCTTG 61.814 66.667 5.05 0.00 0.00 4.01
118 119 3.192230 CGCCGGATTGCTTGCGTA 61.192 61.111 5.05 0.00 41.95 4.42
119 120 2.403586 GCCGGATTGCTTGCGTAC 59.596 61.111 5.05 0.00 37.49 3.67
120 121 3.098555 CCGGATTGCTTGCGTACC 58.901 61.111 0.00 0.00 37.49 3.34
121 122 2.701006 CGGATTGCTTGCGTACCG 59.299 61.111 0.00 0.00 34.02 4.02
139 140 4.493747 CGCTTCCGGACGGGTCTC 62.494 72.222 15.92 0.00 37.00 3.36
140 141 4.144703 GCTTCCGGACGGGTCTCC 62.145 72.222 1.83 0.00 37.00 3.71
141 142 2.362632 CTTCCGGACGGGTCTCCT 60.363 66.667 1.83 0.00 37.00 3.69
142 143 1.982938 CTTCCGGACGGGTCTCCTT 60.983 63.158 1.83 0.00 37.00 3.36
143 144 1.946475 CTTCCGGACGGGTCTCCTTC 61.946 65.000 1.83 0.00 37.00 3.46
144 145 3.823330 CCGGACGGGTCTCCTTCG 61.823 72.222 0.00 0.00 32.58 3.79
145 146 3.823330 CGGACGGGTCTCCTTCGG 61.823 72.222 0.00 0.00 32.58 4.30
146 147 4.144703 GGACGGGTCTCCTTCGGC 62.145 72.222 0.00 0.00 32.58 5.54
147 148 4.493747 GACGGGTCTCCTTCGGCG 62.494 72.222 0.00 0.00 0.00 6.46
149 150 4.796231 CGGGTCTCCTTCGGCGTG 62.796 72.222 6.85 0.75 0.00 5.34
150 151 3.379445 GGGTCTCCTTCGGCGTGA 61.379 66.667 6.85 1.36 0.00 4.35
151 152 2.182030 GGTCTCCTTCGGCGTGAG 59.818 66.667 6.85 11.78 0.00 3.51
163 164 3.857854 CGTGAGCTGCGGTGCATC 61.858 66.667 0.00 0.00 38.13 3.91
164 165 2.743538 GTGAGCTGCGGTGCATCA 60.744 61.111 0.00 0.00 38.13 3.07
165 166 2.110967 GTGAGCTGCGGTGCATCAT 61.111 57.895 0.00 0.00 38.13 2.45
166 167 1.816679 TGAGCTGCGGTGCATCATC 60.817 57.895 0.00 0.00 38.13 2.92
167 168 2.515523 AGCTGCGGTGCATCATCC 60.516 61.111 0.00 0.00 38.13 3.51
168 169 2.515523 GCTGCGGTGCATCATCCT 60.516 61.111 0.00 0.00 38.13 3.24
169 170 2.541120 GCTGCGGTGCATCATCCTC 61.541 63.158 0.00 0.00 38.13 3.71
170 171 2.202919 TGCGGTGCATCATCCTCG 60.203 61.111 0.00 0.00 31.71 4.63
171 172 2.969238 GCGGTGCATCATCCTCGG 60.969 66.667 0.00 0.00 0.00 4.63
172 173 2.969238 CGGTGCATCATCCTCGGC 60.969 66.667 0.00 0.00 0.00 5.54
173 174 2.969238 GGTGCATCATCCTCGGCG 60.969 66.667 0.00 0.00 0.00 6.46
174 175 2.202932 GTGCATCATCCTCGGCGT 60.203 61.111 6.85 0.00 0.00 5.68
175 176 1.815421 GTGCATCATCCTCGGCGTT 60.815 57.895 6.85 0.00 0.00 4.84
176 177 1.815003 TGCATCATCCTCGGCGTTG 60.815 57.895 6.85 0.75 0.00 4.10
177 178 1.521457 GCATCATCCTCGGCGTTGA 60.521 57.895 6.85 5.07 0.00 3.18
178 179 1.089481 GCATCATCCTCGGCGTTGAA 61.089 55.000 6.85 0.00 0.00 2.69
179 180 0.933097 CATCATCCTCGGCGTTGAAG 59.067 55.000 6.85 1.98 0.00 3.02
180 181 0.179073 ATCATCCTCGGCGTTGAAGG 60.179 55.000 6.85 6.38 0.00 3.46
181 182 1.079127 CATCCTCGGCGTTGAAGGT 60.079 57.895 6.85 0.00 0.00 3.50
182 183 0.174845 CATCCTCGGCGTTGAAGGTA 59.825 55.000 6.85 0.00 0.00 3.08
183 184 0.175073 ATCCTCGGCGTTGAAGGTAC 59.825 55.000 6.85 0.00 0.00 3.34
184 185 1.180456 TCCTCGGCGTTGAAGGTACA 61.180 55.000 6.85 0.00 0.00 2.90
185 186 1.012486 CCTCGGCGTTGAAGGTACAC 61.012 60.000 6.85 0.00 0.00 2.90
186 187 1.342082 CTCGGCGTTGAAGGTACACG 61.342 60.000 6.85 0.00 0.00 4.49
187 188 2.377310 CGGCGTTGAAGGTACACGG 61.377 63.158 0.00 0.00 0.00 4.94
188 189 1.301165 GGCGTTGAAGGTACACGGT 60.301 57.895 5.04 0.00 0.00 4.83
189 190 1.562575 GGCGTTGAAGGTACACGGTG 61.563 60.000 6.58 6.58 0.00 4.94
190 191 0.598158 GCGTTGAAGGTACACGGTGA 60.598 55.000 16.29 0.00 0.00 4.02
191 192 1.134226 CGTTGAAGGTACACGGTGAC 58.866 55.000 16.29 8.49 0.00 3.67
205 206 1.577468 GGTGACGTGTTCATGTGTGA 58.423 50.000 0.00 0.00 36.32 3.58
206 207 1.937223 GGTGACGTGTTCATGTGTGAA 59.063 47.619 0.00 0.00 41.89 3.18
341 342 1.072266 ACATGGAAAGGGCTACCACA 58.928 50.000 0.00 0.00 40.13 4.17
379 381 8.856153 TGCTACCTTCAAATGTTTATTCTACA 57.144 30.769 0.00 0.00 0.00 2.74
420 422 6.553100 AGCTAGCTACTCAATACATCTTTCCT 59.447 38.462 17.69 0.00 0.00 3.36
421 423 7.070571 AGCTAGCTACTCAATACATCTTTCCTT 59.929 37.037 17.69 0.00 0.00 3.36
422 424 7.713073 GCTAGCTACTCAATACATCTTTCCTTT 59.287 37.037 7.70 0.00 0.00 3.11
423 425 9.606631 CTAGCTACTCAATACATCTTTCCTTTT 57.393 33.333 0.00 0.00 0.00 2.27
424 426 8.499403 AGCTACTCAATACATCTTTCCTTTTC 57.501 34.615 0.00 0.00 0.00 2.29
425 427 7.554476 AGCTACTCAATACATCTTTCCTTTTCC 59.446 37.037 0.00 0.00 0.00 3.13
442 444 8.382058 TCCTTTTCCTTTTCCTTTTCCTTTTA 57.618 30.769 0.00 0.00 0.00 1.52
457 459 4.200874 TCCTTTTACGTTTCTGGCTTTGA 58.799 39.130 0.00 0.00 0.00 2.69
464 466 2.291741 CGTTTCTGGCTTTGAAGAGCTT 59.708 45.455 0.00 0.00 42.32 3.74
484 486 8.470805 AGAGCTTCTTTTCTCTTTACATCGATA 58.529 33.333 0.00 0.00 36.33 2.92
491 493 8.771920 TTTTCTCTTTACATCGATACACACAT 57.228 30.769 0.00 0.00 0.00 3.21
583 643 2.249535 CGCCTTGAGATCGCCCATG 61.250 63.158 0.00 0.00 0.00 3.66
674 734 2.393646 ACTAGAAGGAAGCTAGGCCAG 58.606 52.381 5.01 0.97 39.67 4.85
676 736 0.908198 AGAAGGAAGCTAGGCCAGTG 59.092 55.000 5.01 0.00 0.00 3.66
683 743 0.761802 AGCTAGGCCAGTGGAATAGC 59.238 55.000 26.86 26.86 38.04 2.97
698 758 6.156256 AGTGGAATAGCTACACCTATTGAACA 59.844 38.462 15.89 0.00 37.95 3.18
876 1091 6.589907 CCACATGTTTTATTCAACCTAAAGCC 59.410 38.462 0.00 0.00 0.00 4.35
879 1094 6.249035 TGTTTTATTCAACCTAAAGCCTCG 57.751 37.500 0.00 0.00 0.00 4.63
906 1121 1.980036 TCGGTTATATAAGCCCACCCC 59.020 52.381 16.90 3.16 0.00 4.95
953 1175 4.183865 CCATCATCGCTTGAACAGTAAGA 58.816 43.478 0.00 0.00 38.03 2.10
963 1185 4.623932 TGAACAGTAAGAAGGACAGCAT 57.376 40.909 0.00 0.00 0.00 3.79
979 1201 2.096069 CAGCATCAAGAAGACACCAACG 60.096 50.000 0.00 0.00 0.00 4.10
993 1215 0.813184 CCAACGAGCTAGTTCCGGTA 59.187 55.000 9.47 0.00 30.96 4.02
994 1216 1.203052 CCAACGAGCTAGTTCCGGTAA 59.797 52.381 9.47 0.00 30.96 2.85
995 1217 2.527100 CAACGAGCTAGTTCCGGTAAG 58.473 52.381 9.47 0.00 30.96 2.34
996 1218 2.119801 ACGAGCTAGTTCCGGTAAGA 57.880 50.000 0.00 0.00 0.00 2.10
997 1219 2.015587 ACGAGCTAGTTCCGGTAAGAG 58.984 52.381 0.00 0.00 0.00 2.85
998 1220 1.268640 CGAGCTAGTTCCGGTAAGAGC 60.269 57.143 0.00 7.21 0.00 4.09
999 1221 0.739561 AGCTAGTTCCGGTAAGAGCG 59.260 55.000 0.00 0.00 39.06 5.03
1001 1223 1.337387 GCTAGTTCCGGTAAGAGCGAT 59.663 52.381 0.00 0.00 42.41 4.58
1002 1224 2.859032 GCTAGTTCCGGTAAGAGCGATG 60.859 54.545 0.00 0.00 42.41 3.84
1003 1225 1.183549 AGTTCCGGTAAGAGCGATGT 58.816 50.000 0.00 0.00 42.41 3.06
1089 1328 2.830370 GCATTTCCTCCGGCTGGG 60.830 66.667 12.87 2.03 35.24 4.45
1218 1457 1.609783 CCTCCTCCGCCTCCATTTT 59.390 57.895 0.00 0.00 0.00 1.82
1242 1485 0.666577 ACTGCTTCGTCAAGGTACGC 60.667 55.000 0.00 0.00 42.56 4.42
1262 1505 0.700564 AGCAACCACATCACCCTCAT 59.299 50.000 0.00 0.00 0.00 2.90
1571 1820 2.640346 TTACGTCATGTCGCTTGCTA 57.360 45.000 12.29 0.00 0.00 3.49
1576 1825 0.894835 TCATGTCGCTTGCTACCAGA 59.105 50.000 0.00 0.00 0.00 3.86
1591 1840 0.549950 CCAGAGCCCCATGAATCTGT 59.450 55.000 0.00 0.00 37.97 3.41
1595 1844 2.027385 GAGCCCCATGAATCTGTTTCC 58.973 52.381 0.00 0.00 33.04 3.13
1608 1857 6.664816 TGAATCTGTTTCCTTGGCTAATCATT 59.335 34.615 0.00 0.00 33.04 2.57
1620 1869 5.429957 GGCTAATCATTACTCAAGCCAAG 57.570 43.478 6.30 0.00 46.95 3.61
1621 1870 4.261363 GGCTAATCATTACTCAAGCCAAGC 60.261 45.833 6.30 0.00 46.95 4.01
1622 1871 4.553547 GCTAATCATTACTCAAGCCAAGCG 60.554 45.833 0.00 0.00 0.00 4.68
1623 1872 1.086696 TCATTACTCAAGCCAAGCGC 58.913 50.000 0.00 0.00 37.98 5.92
1661 1910 0.236449 CAAACGCCCGTAACTGTTCC 59.764 55.000 0.00 0.00 0.00 3.62
1674 1923 0.034059 CTGTTCCTCTTGCTGTCCGT 59.966 55.000 0.00 0.00 0.00 4.69
1683 1932 5.185249 TCCTCTTGCTGTCCGTATATATTCC 59.815 44.000 0.00 0.00 0.00 3.01
1696 1946 6.426937 CCGTATATATTCCTTCCCAGTTTGTG 59.573 42.308 0.00 0.00 0.00 3.33
1725 1982 1.063006 CAGCGAATCATGTTGCCGG 59.937 57.895 0.00 0.00 0.00 6.13
1726 1983 1.078497 AGCGAATCATGTTGCCGGA 60.078 52.632 5.05 0.00 0.00 5.14
1740 1997 1.271108 TGCCGGAAATGTGAAGCTACA 60.271 47.619 5.05 0.00 34.63 2.74
1796 2056 3.196254 CCTCCCCTGAATTTCAATGTTGG 59.804 47.826 0.01 0.00 0.00 3.77
1836 2096 7.051506 GTGTGACACATGTACGTACTGAACG 62.052 48.000 25.12 12.77 44.72 3.95
1877 2137 7.653767 ATCCGTACTAAAAGAAGACACAAAG 57.346 36.000 0.00 0.00 0.00 2.77
1919 2179 2.857592 AGCAGCGGCAAAATTATCTG 57.142 45.000 12.44 0.00 44.61 2.90
2008 2270 6.453791 GCACACTGTATTGTAGATAACACGTG 60.454 42.308 15.48 15.48 38.00 4.49
2115 2382 6.613755 TTTCTTTAGAAACACAGTACAGCC 57.386 37.500 0.89 0.00 38.94 4.85
2116 2383 4.304110 TCTTTAGAAACACAGTACAGCCG 58.696 43.478 0.00 0.00 0.00 5.52
2117 2384 2.074547 TAGAAACACAGTACAGCCGC 57.925 50.000 0.00 0.00 0.00 6.53
2118 2385 0.393077 AGAAACACAGTACAGCCGCT 59.607 50.000 0.00 0.00 0.00 5.52
2119 2386 1.202651 AGAAACACAGTACAGCCGCTT 60.203 47.619 0.00 0.00 0.00 4.68
2120 2387 1.602377 GAAACACAGTACAGCCGCTTT 59.398 47.619 0.00 0.00 0.00 3.51
2121 2388 0.944386 AACACAGTACAGCCGCTTTG 59.056 50.000 0.00 0.00 0.00 2.77
2122 2389 1.207593 CACAGTACAGCCGCTTTGC 59.792 57.895 0.00 0.00 0.00 3.68
2123 2390 1.966451 ACAGTACAGCCGCTTTGCC 60.966 57.895 0.00 0.00 0.00 4.52
2124 2391 2.359975 AGTACAGCCGCTTTGCCC 60.360 61.111 0.00 0.00 0.00 5.36
2125 2392 2.359975 GTACAGCCGCTTTGCCCT 60.360 61.111 0.00 0.00 0.00 5.19
2126 2393 2.046314 TACAGCCGCTTTGCCCTC 60.046 61.111 0.00 0.00 0.00 4.30
2127 2394 3.622060 TACAGCCGCTTTGCCCTCC 62.622 63.158 0.00 0.00 0.00 4.30
2128 2395 4.729918 CAGCCGCTTTGCCCTCCT 62.730 66.667 0.00 0.00 0.00 3.69
2129 2396 4.416738 AGCCGCTTTGCCCTCCTC 62.417 66.667 0.00 0.00 0.00 3.71
2131 2398 3.721706 CCGCTTTGCCCTCCTCCT 61.722 66.667 0.00 0.00 0.00 3.69
2132 2399 2.352805 CGCTTTGCCCTCCTCCTT 59.647 61.111 0.00 0.00 0.00 3.36
2133 2400 1.303643 CGCTTTGCCCTCCTCCTTT 60.304 57.895 0.00 0.00 0.00 3.11
2134 2401 0.895559 CGCTTTGCCCTCCTCCTTTT 60.896 55.000 0.00 0.00 0.00 2.27
2135 2402 0.891373 GCTTTGCCCTCCTCCTTTTC 59.109 55.000 0.00 0.00 0.00 2.29
2136 2403 1.548809 GCTTTGCCCTCCTCCTTTTCT 60.549 52.381 0.00 0.00 0.00 2.52
2137 2404 2.290960 GCTTTGCCCTCCTCCTTTTCTA 60.291 50.000 0.00 0.00 0.00 2.10
2138 2405 3.814316 GCTTTGCCCTCCTCCTTTTCTAA 60.814 47.826 0.00 0.00 0.00 2.10
2139 2406 4.407365 CTTTGCCCTCCTCCTTTTCTAAA 58.593 43.478 0.00 0.00 0.00 1.85
2140 2407 4.463050 TTGCCCTCCTCCTTTTCTAAAA 57.537 40.909 0.00 0.00 0.00 1.52
2141 2408 4.463050 TGCCCTCCTCCTTTTCTAAAAA 57.537 40.909 0.00 0.00 0.00 1.94
2259 2534 4.833380 ACTAGTACAAGTTCTGCTCCAGAA 59.167 41.667 3.69 3.69 46.50 3.02
2269 2544 3.668447 TCTGCTCCAGAACAAAGATGTC 58.332 45.455 0.00 0.00 39.40 3.06
2278 2553 2.191128 ACAAAGATGTCCAGCACTCC 57.809 50.000 0.00 0.00 33.41 3.85
2279 2554 1.421268 ACAAAGATGTCCAGCACTCCA 59.579 47.619 0.00 0.00 33.41 3.86
2280 2555 2.082231 CAAAGATGTCCAGCACTCCAG 58.918 52.381 0.00 0.00 0.00 3.86
2281 2556 1.649321 AAGATGTCCAGCACTCCAGA 58.351 50.000 0.00 0.00 0.00 3.86
2282 2557 0.901124 AGATGTCCAGCACTCCAGAC 59.099 55.000 0.00 0.00 0.00 3.51
2294 2569 1.338337 ACTCCAGACACTTCACAGTCG 59.662 52.381 0.00 0.00 39.67 4.18
2301 2576 3.057019 GACACTTCACAGTCGCATACAA 58.943 45.455 0.00 0.00 0.00 2.41
2307 2582 2.170397 TCACAGTCGCATACAATCCCAT 59.830 45.455 0.00 0.00 0.00 4.00
2316 2591 5.700832 TCGCATACAATCCCATCTTGATTAC 59.299 40.000 0.00 0.00 31.42 1.89
2324 2599 4.191544 TCCCATCTTGATTACTTTCTGCG 58.808 43.478 0.00 0.00 0.00 5.18
2344 2619 5.992729 TGCGTGACAAAATTTACTTCCTAC 58.007 37.500 0.00 0.00 0.00 3.18
2345 2620 5.761234 TGCGTGACAAAATTTACTTCCTACT 59.239 36.000 0.00 0.00 0.00 2.57
2346 2621 6.073440 TGCGTGACAAAATTTACTTCCTACTC 60.073 38.462 0.00 0.00 0.00 2.59
2362 2637 5.001232 TCCTACTCTGGAAAAATTTCACGG 58.999 41.667 8.06 3.40 38.92 4.94
2377 2652 2.035632 TCACGGGCCAATCTTTTTGTT 58.964 42.857 4.39 0.00 0.00 2.83
2470 2745 1.106285 GCTCCAACAATGACATCCCC 58.894 55.000 0.00 0.00 0.00 4.81
2584 2859 1.134995 CACAGAGCTCTTACCGCATCA 60.135 52.381 15.27 0.00 0.00 3.07
2588 2863 0.747255 AGCTCTTACCGCATCATCGT 59.253 50.000 0.00 0.00 0.00 3.73
2589 2864 1.137086 AGCTCTTACCGCATCATCGTT 59.863 47.619 0.00 0.00 0.00 3.85
2591 2866 3.120792 GCTCTTACCGCATCATCGTTTA 58.879 45.455 0.00 0.00 0.00 2.01
2601 3227 4.961551 CGCATCATCGTTTATTACACCAAC 59.038 41.667 0.00 0.00 0.00 3.77
2609 3235 5.175491 TCGTTTATTACACCAACTGTTCGTC 59.825 40.000 0.00 0.00 33.91 4.20
2629 3255 0.392863 TCGTGCACTTGGATGGATGG 60.393 55.000 16.19 0.00 0.00 3.51
2630 3256 0.392863 CGTGCACTTGGATGGATGGA 60.393 55.000 16.19 0.00 0.00 3.41
2631 3257 1.748244 CGTGCACTTGGATGGATGGAT 60.748 52.381 16.19 0.00 0.00 3.41
2632 3258 2.485302 CGTGCACTTGGATGGATGGATA 60.485 50.000 16.19 0.00 0.00 2.59
2633 3259 3.144506 GTGCACTTGGATGGATGGATAG 58.855 50.000 10.32 0.00 0.00 2.08
2634 3260 3.047857 TGCACTTGGATGGATGGATAGA 58.952 45.455 0.00 0.00 0.00 1.98
2635 3261 3.654321 TGCACTTGGATGGATGGATAGAT 59.346 43.478 0.00 0.00 0.00 1.98
2636 3262 4.008330 GCACTTGGATGGATGGATAGATG 58.992 47.826 0.00 0.00 0.00 2.90
2657 3283 2.541994 TGGGGGCTCCACCTTACT 59.458 61.111 0.00 0.00 41.46 2.24
2671 3297 4.439700 CCACCTTACTATGTACACCTCACG 60.440 50.000 0.00 0.00 0.00 4.35
2672 3298 4.157289 CACCTTACTATGTACACCTCACGT 59.843 45.833 0.00 0.00 0.00 4.49
2694 3320 7.558435 CGTTTCAACTGTTAACGTAGAGTAT 57.442 36.000 16.42 0.00 39.64 2.12
2719 3345 2.351641 GCGACAAAGTCAATCCATGCAA 60.352 45.455 0.00 0.00 32.09 4.08
2720 3346 3.236816 CGACAAAGTCAATCCATGCAAC 58.763 45.455 0.00 0.00 32.09 4.17
2738 3366 5.530712 TGCAACTGTAGTACGTGACAATTA 58.469 37.500 0.00 0.00 0.00 1.40
2789 3417 2.360553 CCTATAGGTCGCTGCTGATG 57.639 55.000 10.96 0.00 0.00 3.07
2885 3513 0.038599 TCAAGTCATGCCCTGCACAT 59.961 50.000 0.00 0.00 43.04 3.21
2886 3514 1.281577 TCAAGTCATGCCCTGCACATA 59.718 47.619 0.00 0.00 43.04 2.29
2887 3515 1.402968 CAAGTCATGCCCTGCACATAC 59.597 52.381 0.00 0.00 43.04 2.39
2888 3516 0.914644 AGTCATGCCCTGCACATACT 59.085 50.000 0.00 0.00 43.04 2.12
2889 3517 1.019673 GTCATGCCCTGCACATACTG 58.980 55.000 0.00 0.00 43.04 2.74
2919 3547 3.743911 CACACGTCAAAGGCTACATGTTA 59.256 43.478 2.30 0.00 0.00 2.41
2936 3569 4.948341 TGTTAGAAACTGACCAGTGCTA 57.052 40.909 3.13 6.24 41.58 3.49
2939 3572 5.163343 TGTTAGAAACTGACCAGTGCTAACT 60.163 40.000 30.17 18.39 46.50 2.24
2948 3581 4.238514 GACCAGTGCTAACTTACAGTGAG 58.761 47.826 0.00 0.00 39.15 3.51
3001 4425 3.569250 TGTCATGAACTCGTGATCGAA 57.431 42.857 0.00 0.00 45.61 3.71
3025 4449 0.693622 TGGCCGGAAACTGAACCATA 59.306 50.000 5.05 0.00 0.00 2.74
3101 4525 0.180642 TGTACAACCAGACGGGCAAA 59.819 50.000 0.00 0.00 42.05 3.68
3115 4539 1.377856 GCAAAGGCCTCCCAGACTC 60.378 63.158 5.23 0.00 0.00 3.36
3119 4543 3.403558 GGCCTCCCAGACTCCACC 61.404 72.222 0.00 0.00 0.00 4.61
3191 4615 1.270893 GGCGACCAGAACCTCTTCTTT 60.271 52.381 0.00 0.00 34.20 2.52
3235 4659 4.500603 AGTTCGACAACCAGTACTACAG 57.499 45.455 0.00 0.00 32.22 2.74
3255 4679 2.278404 ACCTGCTGGTGCACCAAA 59.722 55.556 36.71 26.47 46.97 3.28
3331 4755 2.887568 CAAGCTCTACGCCGCCAG 60.888 66.667 0.00 0.00 40.39 4.85
3454 4878 4.998051 AGGGTTAACCACAACTGATCAAT 58.002 39.130 25.71 0.00 43.89 2.57
3472 4896 6.183361 TGATCAATCAGTTGGATGATCCATCT 60.183 38.462 16.03 16.72 44.99 2.90
3493 4917 0.820871 GAGCTAGTGGAGTGGTCTGG 59.179 60.000 0.00 0.00 0.00 3.86
3528 4952 6.866248 CAGGTTAATTATTTGCCGTTTTCAGT 59.134 34.615 0.00 0.00 0.00 3.41
3574 4998 7.001347 GCGATTTCTTGTTTCCGTTTAATTTG 58.999 34.615 0.00 0.00 0.00 2.32
3579 5005 7.861176 TCTTGTTTCCGTTTAATTTGTATGC 57.139 32.000 0.00 0.00 0.00 3.14
3589 5015 6.483687 GTTTAATTTGTATGCGATTCGTCCT 58.516 36.000 8.03 0.00 0.00 3.85
3651 5085 6.662865 TTAGAGGAATCTGATGCTAAGAGG 57.337 41.667 0.00 0.00 0.00 3.69
3655 5089 5.153675 AGGAATCTGATGCTAAGAGGATGA 58.846 41.667 0.00 0.00 0.00 2.92
3674 5108 0.100503 AAAACACTGCGTTGGCACTC 59.899 50.000 0.00 0.00 46.21 3.51
3675 5109 1.724582 AAACACTGCGTTGGCACTCC 61.725 55.000 0.00 0.00 46.21 3.85
3703 5144 4.385358 TTCAGTTTTCAGGCCAAGAAAC 57.615 40.909 19.35 17.50 34.94 2.78
3705 5146 2.039418 AGTTTTCAGGCCAAGAAACCC 58.961 47.619 19.35 13.97 34.94 4.11
3743 5184 7.750229 TGAATTCAAGTTAAGTCAGAGCAAT 57.250 32.000 5.45 0.00 30.60 3.56
3773 5214 4.281182 AGAGTAGCCATATTGGTAACCTCG 59.719 45.833 0.00 0.00 40.46 4.63
3790 5231 5.743026 ACCTCGATATCACATATAGAGCG 57.257 43.478 3.12 0.00 41.08 5.03
3797 5238 2.587522 TCACATATAGAGCGTGCTCCT 58.412 47.619 17.76 8.74 43.70 3.69
3831 5276 5.012328 AGACTAGCCTATGTGCAAACTAC 57.988 43.478 0.00 0.00 0.00 2.73
3833 5278 2.762535 AGCCTATGTGCAAACTACGT 57.237 45.000 0.00 0.00 0.00 3.57
3855 5300 1.202687 TCTCCATAATGGCTGCCTTCG 60.203 52.381 21.03 5.99 37.47 3.79
3860 5305 3.557898 CCATAATGGCTGCCTTCGTATCT 60.558 47.826 21.03 0.00 0.00 1.98
3866 5311 2.356135 GCTGCCTTCGTATCTTTGGAA 58.644 47.619 0.00 0.00 0.00 3.53
3872 5317 4.636206 GCCTTCGTATCTTTGGAATCACTT 59.364 41.667 0.00 0.00 0.00 3.16
3965 5410 7.806409 TTTGATATACACATCATGTTGAGGG 57.194 36.000 10.74 2.76 43.19 4.30
3974 5419 3.912496 TCATGTTGAGGGTGGACATAG 57.088 47.619 0.00 0.00 33.03 2.23
4018 5464 9.530129 GTTCAGATAAAATAACAAGAGTTCACG 57.470 33.333 0.00 0.00 39.15 4.35
4023 5469 9.704098 GATAAAATAACAAGAGTTCACGAATCC 57.296 33.333 0.00 0.00 39.15 3.01
4032 5478 6.037786 AGAGTTCACGAATCCTACAAATCA 57.962 37.500 0.00 0.00 0.00 2.57
4056 5502 9.689976 TCAATGTAAAAGTTACCACATGATTTG 57.310 29.630 0.00 0.00 32.15 2.32
4066 5512 2.691526 CCACATGATTTGGATGAGGTGG 59.308 50.000 0.00 0.00 38.64 4.61
4072 5518 0.038166 TTTGGATGAGGTGGACTGGC 59.962 55.000 0.00 0.00 0.00 4.85
4094 5540 0.531532 AGGCAAATGATCGCTCTCGG 60.532 55.000 0.00 0.00 36.13 4.63
4124 5570 2.813908 GTTTGCGACCGCCTCGAT 60.814 61.111 12.08 0.00 46.14 3.59
4130 5576 2.026301 GACCGCCTCGATCTTCCG 59.974 66.667 0.00 0.00 0.00 4.30
4134 5580 3.849951 GCCTCGATCTTCCGGCCA 61.850 66.667 2.24 0.00 36.56 5.36
4135 5581 3.142393 CCTCGATCTTCCGGCCAT 58.858 61.111 2.24 0.00 0.00 4.40
4136 5582 1.447643 CCTCGATCTTCCGGCCATT 59.552 57.895 2.24 0.00 0.00 3.16
4149 5595 2.892025 GCCATTGCCACAATCCTCT 58.108 52.632 0.00 0.00 0.00 3.69
4150 5596 0.458669 GCCATTGCCACAATCCTCTG 59.541 55.000 0.00 0.00 0.00 3.35
4164 5610 1.817099 CTCTGCAAGATCCGCCACC 60.817 63.158 2.49 0.00 45.62 4.61
4165 5611 2.249413 CTCTGCAAGATCCGCCACCT 62.249 60.000 2.49 0.00 45.62 4.00
4166 5612 1.817099 CTGCAAGATCCGCCACCTC 60.817 63.158 2.49 0.00 34.07 3.85
4191 5641 0.104120 GCGGGGCATTTTTATCCACC 59.896 55.000 0.00 0.00 0.00 4.61
4206 5656 0.995024 CCACCTCCCTCATCACCTTT 59.005 55.000 0.00 0.00 0.00 3.11
4212 5662 1.075374 TCCCTCATCACCTTTGTTGGG 59.925 52.381 0.00 0.00 33.45 4.12
4214 5664 0.890683 CTCATCACCTTTGTTGGGGC 59.109 55.000 0.00 0.00 0.00 5.80
4215 5665 0.187117 TCATCACCTTTGTTGGGGCA 59.813 50.000 0.00 0.00 0.00 5.36
4237 5688 1.285078 AGGGAAGGGCCATGTTTAGAC 59.715 52.381 6.18 0.00 38.95 2.59
4238 5689 1.005450 GGGAAGGGCCATGTTTAGACA 59.995 52.381 6.18 0.00 40.71 3.41
4251 5702 4.072131 TGTTTAGACATGTTGGAAGAGGC 58.928 43.478 0.00 0.00 0.00 4.70
4284 5735 6.764085 TGTATACCATGTAAAAGGAACGATGG 59.236 38.462 0.00 0.00 37.07 3.51
4296 5761 3.146847 GGAACGATGGTGGAAGAGTTTT 58.853 45.455 0.00 0.00 0.00 2.43
4309 5774 3.252974 AGAGTTTTCTACCATGGAGCG 57.747 47.619 21.47 6.03 0.00 5.03
4316 5781 0.105039 CTACCATGGAGCGGGAACTC 59.895 60.000 21.47 0.00 35.86 3.01
4325 5790 2.872557 CGGGAACTCGCTCGTGTA 59.127 61.111 0.00 0.00 0.00 2.90
4363 5828 9.353999 GAGATTACATAAATTGGTTTGGTTGTC 57.646 33.333 0.00 0.00 0.00 3.18
4376 5841 5.123979 GGTTTGGTTGTCCTATGACTTGATC 59.876 44.000 0.00 0.00 42.28 2.92
4381 5847 2.771943 TGTCCTATGACTTGATCCCCAC 59.228 50.000 0.00 0.00 42.28 4.61
4382 5848 2.771943 GTCCTATGACTTGATCCCCACA 59.228 50.000 0.00 0.00 38.53 4.17
4399 5865 4.164221 CCCCACAACAACTATACAGGAGAT 59.836 45.833 0.00 0.00 0.00 2.75
4400 5866 5.365605 CCCCACAACAACTATACAGGAGATA 59.634 44.000 0.00 0.00 0.00 1.98
4401 5867 6.463049 CCCCACAACAACTATACAGGAGATAG 60.463 46.154 0.00 0.00 33.78 2.08
4402 5868 6.463049 CCCACAACAACTATACAGGAGATAGG 60.463 46.154 0.00 0.00 32.14 2.57
4403 5869 6.323996 CCACAACAACTATACAGGAGATAGGA 59.676 42.308 0.00 0.00 32.14 2.94
4404 5870 7.015682 CCACAACAACTATACAGGAGATAGGAT 59.984 40.741 0.00 0.00 32.14 3.24
4405 5871 8.085296 CACAACAACTATACAGGAGATAGGATC 58.915 40.741 0.00 0.00 32.14 3.36
4407 5873 8.303156 CAACAACTATACAGGAGATAGGATCAG 58.697 40.741 0.00 0.00 32.14 2.90
4414 5880 6.968400 ACAGGAGATAGGATCAGATCTCTA 57.032 41.667 24.41 9.98 45.01 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.222847 GTTCGCCCGCCCCTAGAG 62.223 72.222 0.00 0.00 0.00 2.43
11 12 3.846430 CCCTAGGTCGGTTCGCCC 61.846 72.222 8.29 0.00 0.00 6.13
12 13 4.525949 GCCCTAGGTCGGTTCGCC 62.526 72.222 8.29 0.00 0.00 5.54
13 14 3.718210 CTGCCCTAGGTCGGTTCGC 62.718 68.421 8.29 2.31 0.00 4.70
14 15 2.494918 CTGCCCTAGGTCGGTTCG 59.505 66.667 8.29 0.00 0.00 3.95
15 16 2.187163 GCTGCCCTAGGTCGGTTC 59.813 66.667 8.29 0.00 0.00 3.62
16 17 3.400054 GGCTGCCCTAGGTCGGTT 61.400 66.667 7.66 0.00 0.00 4.44
19 20 1.821061 CTATGGGCTGCCCTAGGTCG 61.821 65.000 35.80 15.67 45.70 4.79
20 21 2.062070 CTATGGGCTGCCCTAGGTC 58.938 63.158 35.80 11.26 45.70 3.85
21 22 2.150051 GCTATGGGCTGCCCTAGGT 61.150 63.158 35.80 21.51 45.70 3.08
22 23 2.753029 GCTATGGGCTGCCCTAGG 59.247 66.667 35.80 24.75 45.70 3.02
23 24 2.753029 GGCTATGGGCTGCCCTAG 59.247 66.667 35.80 30.35 45.70 3.02
24 25 3.241530 CGGCTATGGGCTGCCCTA 61.242 66.667 35.80 23.24 45.70 3.53
48 49 3.075641 GAGGGACCCCGTCTGGAC 61.076 72.222 7.00 0.00 41.95 4.02
49 50 3.273654 AGAGGGACCCCGTCTGGA 61.274 66.667 7.00 0.00 45.49 3.86
50 51 2.760385 GAGAGGGACCCCGTCTGG 60.760 72.222 7.00 0.00 46.92 3.86
51 52 3.141488 CGAGAGGGACCCCGTCTG 61.141 72.222 7.00 0.00 46.92 3.51
73 74 3.633116 AGGACCCGAAACCCCACG 61.633 66.667 0.00 0.00 0.00 4.94
74 75 2.033602 CAGGACCCGAAACCCCAC 59.966 66.667 0.00 0.00 0.00 4.61
75 76 1.354168 TTTCAGGACCCGAAACCCCA 61.354 55.000 0.00 0.00 0.00 4.96
76 77 0.178984 TTTTCAGGACCCGAAACCCC 60.179 55.000 2.18 0.00 32.27 4.95
77 78 1.244816 CTTTTCAGGACCCGAAACCC 58.755 55.000 2.18 0.00 32.27 4.11
78 79 0.596577 GCTTTTCAGGACCCGAAACC 59.403 55.000 2.18 0.00 32.27 3.27
79 80 1.001706 GTGCTTTTCAGGACCCGAAAC 60.002 52.381 2.18 0.00 35.33 2.78
80 81 1.314730 GTGCTTTTCAGGACCCGAAA 58.685 50.000 0.00 0.00 35.33 3.46
81 82 3.015516 GTGCTTTTCAGGACCCGAA 57.984 52.632 0.00 0.00 35.33 4.30
82 83 4.792087 GTGCTTTTCAGGACCCGA 57.208 55.556 0.00 0.00 35.33 5.14
86 87 2.626780 GGCGGGTGCTTTTCAGGAC 61.627 63.158 0.00 0.00 40.63 3.85
87 88 2.282180 GGCGGGTGCTTTTCAGGA 60.282 61.111 0.00 0.00 42.25 3.86
88 89 3.737172 CGGCGGGTGCTTTTCAGG 61.737 66.667 0.00 0.00 42.25 3.86
89 90 3.737172 CCGGCGGGTGCTTTTCAG 61.737 66.667 20.56 0.00 42.25 3.02
90 91 3.561120 ATCCGGCGGGTGCTTTTCA 62.561 57.895 27.98 2.79 42.25 2.69
91 92 2.340328 AATCCGGCGGGTGCTTTTC 61.340 57.895 27.98 0.00 42.25 2.29
92 93 2.282887 AATCCGGCGGGTGCTTTT 60.283 55.556 27.98 0.00 42.25 2.27
93 94 3.061848 CAATCCGGCGGGTGCTTT 61.062 61.111 27.98 9.46 42.25 3.51
97 98 3.814268 CAAGCAATCCGGCGGGTG 61.814 66.667 27.98 24.15 39.27 4.61
102 103 2.403586 GTACGCAAGCAATCCGGC 59.596 61.111 0.00 0.00 45.62 6.13
103 104 3.098555 GGTACGCAAGCAATCCGG 58.901 61.111 0.00 0.00 45.62 5.14
122 123 4.493747 GAGACCCGTCCGGAAGCG 62.494 72.222 5.23 6.61 37.50 4.68
123 124 4.144703 GGAGACCCGTCCGGAAGC 62.145 72.222 5.23 0.00 37.50 3.86
124 125 1.946475 GAAGGAGACCCGTCCGGAAG 61.946 65.000 5.23 8.49 42.05 3.46
125 126 1.980772 GAAGGAGACCCGTCCGGAA 60.981 63.158 5.23 0.00 42.05 4.30
126 127 2.362120 GAAGGAGACCCGTCCGGA 60.362 66.667 0.00 0.00 42.05 5.14
127 128 3.823330 CGAAGGAGACCCGTCCGG 61.823 72.222 0.00 0.00 42.05 5.14
146 147 3.857854 GATGCACCGCAGCTCACG 61.858 66.667 0.00 0.00 43.65 4.35
147 148 2.044832 GATGATGCACCGCAGCTCAC 62.045 60.000 5.76 0.00 45.80 3.51
148 149 1.816679 GATGATGCACCGCAGCTCA 60.817 57.895 5.76 0.39 45.80 4.26
149 150 2.541120 GGATGATGCACCGCAGCTC 61.541 63.158 5.76 1.23 45.80 4.09
150 151 2.515523 GGATGATGCACCGCAGCT 60.516 61.111 5.76 0.00 45.80 4.24
151 152 2.515523 AGGATGATGCACCGCAGC 60.516 61.111 0.00 0.00 45.81 5.25
152 153 2.242572 CGAGGATGATGCACCGCAG 61.243 63.158 0.00 0.00 43.65 5.18
153 154 2.202919 CGAGGATGATGCACCGCA 60.203 61.111 0.00 0.00 44.86 5.69
154 155 2.969238 CCGAGGATGATGCACCGC 60.969 66.667 0.00 0.00 0.00 5.68
155 156 2.969238 GCCGAGGATGATGCACCG 60.969 66.667 0.00 0.00 0.00 4.94
156 157 2.969238 CGCCGAGGATGATGCACC 60.969 66.667 0.00 0.00 0.00 5.01
157 158 1.815421 AACGCCGAGGATGATGCAC 60.815 57.895 0.00 0.00 0.00 4.57
158 159 1.815003 CAACGCCGAGGATGATGCA 60.815 57.895 0.00 0.00 0.00 3.96
159 160 1.089481 TTCAACGCCGAGGATGATGC 61.089 55.000 0.00 0.00 0.00 3.91
160 161 0.933097 CTTCAACGCCGAGGATGATG 59.067 55.000 0.00 0.00 0.00 3.07
161 162 0.179073 CCTTCAACGCCGAGGATGAT 60.179 55.000 0.00 0.00 32.11 2.45
162 163 1.218047 CCTTCAACGCCGAGGATGA 59.782 57.895 0.00 0.00 32.11 2.92
163 164 0.174845 TACCTTCAACGCCGAGGATG 59.825 55.000 0.00 0.00 34.61 3.51
164 165 0.175073 GTACCTTCAACGCCGAGGAT 59.825 55.000 0.00 0.00 34.61 3.24
165 166 1.180456 TGTACCTTCAACGCCGAGGA 61.180 55.000 0.00 0.00 34.61 3.71
166 167 1.012486 GTGTACCTTCAACGCCGAGG 61.012 60.000 0.00 0.00 36.62 4.63
167 168 1.342082 CGTGTACCTTCAACGCCGAG 61.342 60.000 0.00 0.00 0.00 4.63
168 169 1.372004 CGTGTACCTTCAACGCCGA 60.372 57.895 0.00 0.00 0.00 5.54
169 170 2.377310 CCGTGTACCTTCAACGCCG 61.377 63.158 0.00 0.00 0.00 6.46
170 171 1.301165 ACCGTGTACCTTCAACGCC 60.301 57.895 0.00 0.00 0.00 5.68
171 172 0.598158 TCACCGTGTACCTTCAACGC 60.598 55.000 0.00 0.00 0.00 4.84
172 173 1.134226 GTCACCGTGTACCTTCAACG 58.866 55.000 0.00 0.00 0.00 4.10
173 174 1.134226 CGTCACCGTGTACCTTCAAC 58.866 55.000 0.00 0.00 0.00 3.18
174 175 3.573569 CGTCACCGTGTACCTTCAA 57.426 52.632 0.00 0.00 0.00 2.69
185 186 0.232046 CACACATGAACACGTCACCG 59.768 55.000 0.00 0.00 39.72 4.94
186 187 1.577468 TCACACATGAACACGTCACC 58.423 50.000 0.00 0.00 39.72 4.02
195 196 5.375773 TCAGGATTTCTGTTCACACATGAA 58.624 37.500 0.00 0.00 43.76 2.57
196 197 4.971939 TCAGGATTTCTGTTCACACATGA 58.028 39.130 0.00 0.00 43.76 3.07
197 198 5.008911 TGTTCAGGATTTCTGTTCACACATG 59.991 40.000 0.00 0.00 43.76 3.21
198 199 5.132502 TGTTCAGGATTTCTGTTCACACAT 58.867 37.500 0.00 0.00 43.76 3.21
199 200 4.522114 TGTTCAGGATTTCTGTTCACACA 58.478 39.130 0.00 0.00 43.76 3.72
200 201 4.816385 TCTGTTCAGGATTTCTGTTCACAC 59.184 41.667 0.00 0.00 43.76 3.82
201 202 4.816385 GTCTGTTCAGGATTTCTGTTCACA 59.184 41.667 0.00 0.00 43.76 3.58
202 203 5.059833 AGTCTGTTCAGGATTTCTGTTCAC 58.940 41.667 0.00 0.00 43.76 3.18
203 204 5.296151 AGTCTGTTCAGGATTTCTGTTCA 57.704 39.130 0.00 0.00 43.76 3.18
204 205 7.099764 TCATAGTCTGTTCAGGATTTCTGTTC 58.900 38.462 0.00 0.00 43.76 3.18
205 206 7.009179 TCATAGTCTGTTCAGGATTTCTGTT 57.991 36.000 0.00 0.00 43.76 3.16
206 207 6.611613 TCATAGTCTGTTCAGGATTTCTGT 57.388 37.500 0.00 0.00 43.76 3.41
207 208 7.912056 TTTCATAGTCTGTTCAGGATTTCTG 57.088 36.000 0.00 0.00 44.68 3.02
216 217 7.281999 TGACACATTGTTTTCATAGTCTGTTCA 59.718 33.333 0.00 0.00 0.00 3.18
251 252 6.830873 ACTAAAAGCATTGCATTTCTCTCT 57.169 33.333 14.49 0.00 31.91 3.10
252 253 7.880059 AAACTAAAAGCATTGCATTTCTCTC 57.120 32.000 14.49 0.00 31.91 3.20
254 255 8.435430 GGTAAAACTAAAAGCATTGCATTTCTC 58.565 33.333 14.49 1.26 31.91 2.87
255 256 8.150296 AGGTAAAACTAAAAGCATTGCATTTCT 58.850 29.630 14.49 1.95 31.91 2.52
256 257 8.310406 AGGTAAAACTAAAAGCATTGCATTTC 57.690 30.769 14.49 0.27 31.91 2.17
379 381 2.847327 AGCTAGCAGTGTTGTGTCAT 57.153 45.000 18.83 0.00 0.00 3.06
420 422 7.613585 ACGTAAAAGGAAAAGGAAAAGGAAAA 58.386 30.769 0.00 0.00 0.00 2.29
421 423 7.172868 ACGTAAAAGGAAAAGGAAAAGGAAA 57.827 32.000 0.00 0.00 0.00 3.13
422 424 6.778834 ACGTAAAAGGAAAAGGAAAAGGAA 57.221 33.333 0.00 0.00 0.00 3.36
423 425 6.778834 AACGTAAAAGGAAAAGGAAAAGGA 57.221 33.333 0.00 0.00 0.00 3.36
424 426 7.222031 CAGAAACGTAAAAGGAAAAGGAAAAGG 59.778 37.037 0.00 0.00 0.00 3.11
425 427 7.222031 CCAGAAACGTAAAAGGAAAAGGAAAAG 59.778 37.037 0.00 0.00 0.00 2.27
442 444 1.604278 GCTCTTCAAAGCCAGAAACGT 59.396 47.619 0.00 0.00 36.22 3.99
464 466 8.085909 TGTGTGTATCGATGTAAAGAGAAAAGA 58.914 33.333 8.54 0.00 0.00 2.52
491 493 9.311916 GGCATCTGCATTTTTGTAAATTACATA 57.688 29.630 6.67 0.00 44.36 2.29
507 509 6.071320 TCTCTATATATACGGGCATCTGCAT 58.929 40.000 4.33 0.00 44.36 3.96
508 510 5.445964 TCTCTATATATACGGGCATCTGCA 58.554 41.667 4.33 0.00 44.36 4.41
652 712 3.567397 TGGCCTAGCTTCCTTCTAGTAG 58.433 50.000 3.32 0.00 33.43 2.57
653 713 3.052793 ACTGGCCTAGCTTCCTTCTAGTA 60.053 47.826 3.32 0.00 33.43 1.82
654 714 2.292587 ACTGGCCTAGCTTCCTTCTAGT 60.293 50.000 3.32 0.00 33.43 2.57
655 715 2.102252 CACTGGCCTAGCTTCCTTCTAG 59.898 54.545 3.32 0.00 34.70 2.43
656 716 2.111384 CACTGGCCTAGCTTCCTTCTA 58.889 52.381 3.32 0.00 0.00 2.10
657 717 0.908198 CACTGGCCTAGCTTCCTTCT 59.092 55.000 3.32 0.00 0.00 2.85
660 720 0.547712 TTCCACTGGCCTAGCTTCCT 60.548 55.000 3.32 0.00 0.00 3.36
663 723 1.141858 GCTATTCCACTGGCCTAGCTT 59.858 52.381 3.32 0.00 33.07 3.74
674 734 6.346096 TGTTCAATAGGTGTAGCTATTCCAC 58.654 40.000 12.09 10.92 0.00 4.02
676 736 7.859325 TTTGTTCAATAGGTGTAGCTATTCC 57.141 36.000 12.09 2.79 0.00 3.01
735 796 5.804771 GCTCTTCCCTCACCTTTAAGTTGAT 60.805 44.000 0.00 0.00 0.00 2.57
736 797 4.505039 GCTCTTCCCTCACCTTTAAGTTGA 60.505 45.833 0.00 0.00 0.00 3.18
876 1091 2.440539 ATATAACCGAGGCTTGCGAG 57.559 50.000 0.00 0.00 0.00 5.03
879 1094 2.742589 GGCTTATATAACCGAGGCTTGC 59.257 50.000 0.00 0.00 0.00 4.01
915 1130 2.567169 TGATGGTTGTGGTGAGAGGTAG 59.433 50.000 0.00 0.00 0.00 3.18
953 1175 3.406764 GTGTCTTCTTGATGCTGTCCTT 58.593 45.455 0.00 0.00 0.00 3.36
963 1185 1.412710 AGCTCGTTGGTGTCTTCTTGA 59.587 47.619 0.00 0.00 0.00 3.02
979 1201 1.268640 CGCTCTTACCGGAACTAGCTC 60.269 57.143 9.46 0.00 0.00 4.09
993 1215 0.733150 TCGTCATCGACATCGCTCTT 59.267 50.000 0.00 0.00 41.35 2.85
994 1216 0.306228 CTCGTCATCGACATCGCTCT 59.694 55.000 0.00 0.00 41.35 4.09
995 1217 0.658829 CCTCGTCATCGACATCGCTC 60.659 60.000 0.00 0.00 41.35 5.03
996 1218 1.356979 CCTCGTCATCGACATCGCT 59.643 57.895 0.00 0.00 41.35 4.93
997 1219 1.658717 CCCTCGTCATCGACATCGC 60.659 63.158 0.00 0.00 41.35 4.58
998 1220 1.008424 CCCCTCGTCATCGACATCG 60.008 63.158 0.00 0.00 41.35 3.84
999 1221 0.249073 CACCCCTCGTCATCGACATC 60.249 60.000 0.00 0.00 41.35 3.06
1001 1223 3.001902 GCACCCCTCGTCATCGACA 62.002 63.158 0.00 0.00 41.35 4.35
1002 1224 2.202756 GCACCCCTCGTCATCGAC 60.203 66.667 0.00 0.00 41.35 4.20
1003 1225 1.613317 ATTGCACCCCTCGTCATCGA 61.613 55.000 0.00 0.00 44.12 3.59
1107 1346 3.017232 CGAGTGGTCGTAGAAGTGC 57.983 57.895 0.00 0.00 41.57 4.40
1242 1485 0.250858 TGAGGGTGATGTGGTTGCTG 60.251 55.000 0.00 0.00 0.00 4.41
1312 1555 0.499761 CACACGTGTAAACGACGTCC 59.500 55.000 22.90 0.00 46.85 4.79
1571 1820 0.549950 CAGATTCATGGGGCTCTGGT 59.450 55.000 0.00 0.00 33.15 4.00
1576 1825 1.642762 AGGAAACAGATTCATGGGGCT 59.357 47.619 0.00 0.00 39.98 5.19
1583 1832 5.569355 TGATTAGCCAAGGAAACAGATTCA 58.431 37.500 0.00 0.00 39.98 2.57
1591 1840 6.095440 GCTTGAGTAATGATTAGCCAAGGAAA 59.905 38.462 19.30 0.00 31.65 3.13
1595 1844 5.429957 GGCTTGAGTAATGATTAGCCAAG 57.570 43.478 10.27 13.61 45.73 3.61
1608 1857 3.118454 GCGCGCTTGGCTTGAGTA 61.118 61.111 26.67 0.00 40.44 2.59
1622 1871 3.194272 AAGAAACTTGGTGGCGCGC 62.194 57.895 25.94 25.94 0.00 6.86
1623 1872 1.370414 CAAGAAACTTGGTGGCGCG 60.370 57.895 0.00 0.00 0.00 6.86
1661 1910 6.274157 AGGAATATATACGGACAGCAAGAG 57.726 41.667 0.00 0.00 0.00 2.85
1674 1923 6.770785 GCACACAAACTGGGAAGGAATATATA 59.229 38.462 0.00 0.00 0.00 0.86
1683 1932 0.817634 TCCGCACACAAACTGGGAAG 60.818 55.000 0.00 0.00 0.00 3.46
1725 1982 4.253685 TGTAGGCTGTAGCTTCACATTTC 58.746 43.478 0.00 0.00 41.70 2.17
1726 1983 4.020218 TCTGTAGGCTGTAGCTTCACATTT 60.020 41.667 0.00 0.00 41.70 2.32
1740 1997 1.827969 GAGGACACATGTCTGTAGGCT 59.172 52.381 11.63 0.00 44.20 4.58
1796 2056 5.345741 GTGTCACACAATTCATTTACCATGC 59.654 40.000 2.00 0.00 34.08 4.06
1852 2112 7.172703 CCTTTGTGTCTTCTTTTAGTACGGATT 59.827 37.037 0.00 0.00 0.00 3.01
1857 2117 6.017357 CCCACCTTTGTGTCTTCTTTTAGTAC 60.017 42.308 0.00 0.00 41.09 2.73
2008 2270 3.184581 CACAAACCAACTTACTCTCGAGC 59.815 47.826 7.81 0.00 0.00 5.03
2063 2326 9.646427 TGCTGCAATACGTCATTTATATATACA 57.354 29.630 0.00 0.00 0.00 2.29
2073 2336 4.156556 AGAAACATGCTGCAATACGTCATT 59.843 37.500 6.36 0.00 0.00 2.57
2114 2381 2.771328 AAAGGAGGAGGGCAAAGCGG 62.771 60.000 0.00 0.00 0.00 5.52
2115 2382 0.895559 AAAAGGAGGAGGGCAAAGCG 60.896 55.000 0.00 0.00 0.00 4.68
2116 2383 0.891373 GAAAAGGAGGAGGGCAAAGC 59.109 55.000 0.00 0.00 0.00 3.51
2117 2384 2.593925 AGAAAAGGAGGAGGGCAAAG 57.406 50.000 0.00 0.00 0.00 2.77
2118 2385 4.463050 TTTAGAAAAGGAGGAGGGCAAA 57.537 40.909 0.00 0.00 0.00 3.68
2119 2386 4.463050 TTTTAGAAAAGGAGGAGGGCAA 57.537 40.909 0.00 0.00 0.00 4.52
2120 2387 4.463050 TTTTTAGAAAAGGAGGAGGGCA 57.537 40.909 0.00 0.00 0.00 5.36
2140 2407 3.726291 ACACAAAGCGGCTGTATTTTT 57.274 38.095 1.81 0.00 0.00 1.94
2141 2408 4.839668 TTACACAAAGCGGCTGTATTTT 57.160 36.364 1.81 0.00 0.00 1.82
2142 2409 4.839668 TTTACACAAAGCGGCTGTATTT 57.160 36.364 1.81 0.00 0.00 1.40
2143 2410 5.385509 AATTTACACAAAGCGGCTGTATT 57.614 34.783 1.81 0.00 0.00 1.89
2144 2411 5.160641 CAAATTTACACAAAGCGGCTGTAT 58.839 37.500 1.81 0.00 0.00 2.29
2145 2412 4.541779 CAAATTTACACAAAGCGGCTGTA 58.458 39.130 1.81 0.00 0.00 2.74
2146 2413 3.380142 CAAATTTACACAAAGCGGCTGT 58.620 40.909 1.81 0.00 0.00 4.40
2147 2414 2.730928 CCAAATTTACACAAAGCGGCTG 59.269 45.455 1.81 0.00 0.00 4.85
2148 2415 2.866065 GCCAAATTTACACAAAGCGGCT 60.866 45.455 0.00 0.00 35.13 5.52
2149 2416 1.459209 GCCAAATTTACACAAAGCGGC 59.541 47.619 0.00 0.00 32.36 6.53
2150 2417 2.065512 GGCCAAATTTACACAAAGCGG 58.934 47.619 0.00 0.00 0.00 5.52
2259 2534 1.421268 TGGAGTGCTGGACATCTTTGT 59.579 47.619 1.24 0.00 39.32 2.83
2269 2544 0.394192 TGAAGTGTCTGGAGTGCTGG 59.606 55.000 0.00 0.00 0.00 4.85
2278 2553 1.788258 ATGCGACTGTGAAGTGTCTG 58.212 50.000 0.00 0.00 0.00 3.51
2279 2554 2.296190 TGTATGCGACTGTGAAGTGTCT 59.704 45.455 0.00 0.00 0.00 3.41
2280 2555 2.672714 TGTATGCGACTGTGAAGTGTC 58.327 47.619 0.00 0.00 0.00 3.67
2281 2556 2.812358 TGTATGCGACTGTGAAGTGT 57.188 45.000 0.00 0.00 0.00 3.55
2282 2557 3.062639 GGATTGTATGCGACTGTGAAGTG 59.937 47.826 0.00 0.00 0.00 3.16
2294 2569 7.516198 AAGTAATCAAGATGGGATTGTATGC 57.484 36.000 0.00 0.00 36.45 3.14
2301 2576 4.818546 CGCAGAAAGTAATCAAGATGGGAT 59.181 41.667 0.00 0.00 0.00 3.85
2307 2582 4.627058 TGTCACGCAGAAAGTAATCAAGA 58.373 39.130 0.00 0.00 0.00 3.02
2316 2591 6.142320 GGAAGTAAATTTTGTCACGCAGAAAG 59.858 38.462 0.00 0.00 0.00 2.62
2324 2599 7.660208 TCCAGAGTAGGAAGTAAATTTTGTCAC 59.340 37.037 0.00 0.00 33.93 3.67
2344 2619 2.352715 GGCCCGTGAAATTTTTCCAGAG 60.353 50.000 0.00 0.00 36.36 3.35
2345 2620 1.616374 GGCCCGTGAAATTTTTCCAGA 59.384 47.619 0.00 0.00 36.36 3.86
2346 2621 1.342819 TGGCCCGTGAAATTTTTCCAG 59.657 47.619 0.00 0.00 36.36 3.86
2362 2637 3.313690 CACGGTAACAAAAAGATTGGCC 58.686 45.455 0.00 0.00 0.00 5.36
2470 2745 0.463833 GGAGGGTATTGTTGGGAGCG 60.464 60.000 0.00 0.00 0.00 5.03
2584 2859 5.697633 ACGAACAGTTGGTGTAATAAACGAT 59.302 36.000 0.00 0.00 39.03 3.73
2588 2863 5.403166 CGAGACGAACAGTTGGTGTAATAAA 59.597 40.000 5.56 0.00 39.03 1.40
2589 2864 4.919168 CGAGACGAACAGTTGGTGTAATAA 59.081 41.667 5.56 0.00 39.03 1.40
2591 2866 3.243636 ACGAGACGAACAGTTGGTGTAAT 60.244 43.478 5.56 0.00 39.03 1.89
2601 3227 0.504384 CAAGTGCACGAGACGAACAG 59.496 55.000 12.01 0.00 0.00 3.16
2609 3235 1.012086 CATCCATCCAAGTGCACGAG 58.988 55.000 12.01 7.92 0.00 4.18
2629 3255 1.280421 GGAGCCCCCATCACATCTATC 59.720 57.143 0.00 0.00 34.14 2.08
2630 3256 1.366319 GGAGCCCCCATCACATCTAT 58.634 55.000 0.00 0.00 34.14 1.98
2631 3257 0.030195 TGGAGCCCCCATCACATCTA 60.030 55.000 0.00 0.00 40.82 1.98
2632 3258 1.308128 TGGAGCCCCCATCACATCT 60.308 57.895 0.00 0.00 40.82 2.90
2633 3259 3.334604 TGGAGCCCCCATCACATC 58.665 61.111 0.00 0.00 40.82 3.06
2655 3281 4.859304 TGAAACGTGAGGTGTACATAGT 57.141 40.909 0.00 0.00 0.00 2.12
2657 3283 4.986034 CAGTTGAAACGTGAGGTGTACATA 59.014 41.667 0.00 0.00 0.00 2.29
2671 3297 8.290663 ACATACTCTACGTTAACAGTTGAAAC 57.709 34.615 6.39 0.00 0.00 2.78
2672 3298 9.616634 CTACATACTCTACGTTAACAGTTGAAA 57.383 33.333 6.39 3.73 0.00 2.69
2694 3320 3.394674 TGGATTGACTTTGTCGCTACA 57.605 42.857 0.00 0.00 34.95 2.74
2738 3366 6.183360 ACACGCAATTTAATGATGATGGACAT 60.183 34.615 0.00 0.00 42.47 3.06
2789 3417 3.047796 CGTACATGGCGTAGTACCAATC 58.952 50.000 0.00 0.00 41.49 2.67
2885 3513 3.926821 TGACGTGTGCTTGATACAGTA 57.073 42.857 0.00 0.00 0.00 2.74
2886 3514 2.812358 TGACGTGTGCTTGATACAGT 57.188 45.000 0.00 0.00 0.00 3.55
2887 3515 3.120546 CCTTTGACGTGTGCTTGATACAG 60.121 47.826 0.00 0.00 0.00 2.74
2888 3516 2.805671 CCTTTGACGTGTGCTTGATACA 59.194 45.455 0.00 0.00 0.00 2.29
2889 3517 2.412847 GCCTTTGACGTGTGCTTGATAC 60.413 50.000 0.00 0.00 0.00 2.24
2919 3547 4.423625 AAGTTAGCACTGGTCAGTTTCT 57.576 40.909 0.20 4.72 40.20 2.52
3001 4425 1.497309 TTCAGTTTCCGGCCAGGGAT 61.497 55.000 2.24 0.00 41.52 3.85
3025 4449 3.799432 TGGTGTGGCTACCTGTAAAAT 57.201 42.857 11.72 0.00 41.43 1.82
3101 4525 2.284995 GTGGAGTCTGGGAGGCCT 60.285 66.667 3.86 3.86 0.00 5.19
3191 4615 3.986006 GGCGTCACGTGGTCCAGA 61.986 66.667 17.00 0.00 0.00 3.86
3255 4679 3.768922 GTCGGAGCTGAGCAGGCT 61.769 66.667 7.39 0.00 43.26 4.58
3331 4755 2.016096 GCTGGAAGAAGATGTCCTGGC 61.016 57.143 0.00 0.00 34.07 4.85
3411 4835 1.370609 CTGCAGTTGCTCCTGATCTG 58.629 55.000 5.25 0.00 42.66 2.90
3460 4884 4.563168 CCACTAGCTCAAGATGGATCATCC 60.563 50.000 0.00 0.00 41.36 3.51
3463 4887 3.640498 CTCCACTAGCTCAAGATGGATCA 59.360 47.826 0.00 0.00 38.74 2.92
3472 4896 1.895798 CAGACCACTCCACTAGCTCAA 59.104 52.381 0.00 0.00 0.00 3.02
3493 4917 7.360017 GGCAAATAATTAACCTGCAGAAACAAC 60.360 37.037 17.39 0.00 34.66 3.32
3528 4952 3.578272 AAAAGGCACGCGCACGAA 61.578 55.556 5.73 0.00 43.93 3.85
3574 4998 2.268298 ACACAAGGACGAATCGCATAC 58.732 47.619 1.15 0.00 0.00 2.39
3579 5005 4.210537 ACAAAAGTACACAAGGACGAATCG 59.789 41.667 0.00 0.00 0.00 3.34
3589 5015 7.883391 TTAATTCCCTCACAAAAGTACACAA 57.117 32.000 0.00 0.00 0.00 3.33
3641 5067 4.397417 GCAGTGTTTTCATCCTCTTAGCAT 59.603 41.667 0.00 0.00 0.00 3.79
3651 5085 1.268999 TGCCAACGCAGTGTTTTCATC 60.269 47.619 0.00 0.00 45.00 2.92
3674 5108 3.304458 GGCCTGAAAACTGAAAACGTAGG 60.304 47.826 0.00 0.00 0.00 3.18
3675 5109 3.314080 TGGCCTGAAAACTGAAAACGTAG 59.686 43.478 3.32 0.00 0.00 3.51
3739 5180 8.887717 CCAATATGGCTACTCTATTAGAATTGC 58.112 37.037 0.82 0.82 0.00 3.56
3768 5209 5.065346 CACGCTCTATATGTGATATCGAGGT 59.935 44.000 0.00 0.00 36.25 3.85
3773 5214 5.067153 AGGAGCACGCTCTATATGTGATATC 59.933 44.000 17.99 0.00 42.38 1.63
3797 5238 3.497332 AGGCTAGTCTCCATATGCGTAA 58.503 45.455 0.00 0.00 0.00 3.18
3802 5243 4.221482 TGCACATAGGCTAGTCTCCATATG 59.779 45.833 0.00 1.17 34.04 1.78
3811 5252 3.194968 ACGTAGTTTGCACATAGGCTAGT 59.805 43.478 0.00 0.00 37.78 2.57
3814 5255 2.289444 ACACGTAGTTTGCACATAGGCT 60.289 45.455 0.00 0.00 41.61 4.58
3855 5300 6.428159 ACAGTGACAAGTGATTCCAAAGATAC 59.572 38.462 0.00 0.00 0.00 2.24
3860 5305 4.335315 GTCACAGTGACAAGTGATTCCAAA 59.665 41.667 26.12 0.00 46.22 3.28
3950 5395 2.086869 GTCCACCCTCAACATGATGTG 58.913 52.381 0.00 0.00 32.28 3.21
3959 5404 3.650942 ACTCAAACTATGTCCACCCTCAA 59.349 43.478 0.00 0.00 0.00 3.02
3965 5410 4.829064 TTGCAACTCAAACTATGTCCAC 57.171 40.909 0.00 0.00 0.00 4.02
3974 5419 7.985634 TCTGAACTATTTTTGCAACTCAAAC 57.014 32.000 0.00 0.00 43.76 2.93
4032 5478 8.865090 TCCAAATCATGTGGTAACTTTTACATT 58.135 29.630 0.00 0.00 37.43 2.71
4050 5496 2.025981 CCAGTCCACCTCATCCAAATCA 60.026 50.000 0.00 0.00 0.00 2.57
4054 5500 1.685224 GCCAGTCCACCTCATCCAA 59.315 57.895 0.00 0.00 0.00 3.53
4056 5502 2.592308 GGCCAGTCCACCTCATCC 59.408 66.667 0.00 0.00 34.01 3.51
4066 5512 0.749454 ATCATTTGCCTCGGCCAGTC 60.749 55.000 2.24 0.00 41.09 3.51
4072 5518 0.531532 AGAGCGATCATTTGCCTCGG 60.532 55.000 2.38 0.00 32.06 4.63
4134 5580 1.822990 CTTGCAGAGGATTGTGGCAAT 59.177 47.619 0.00 0.00 42.79 3.56
4135 5581 1.202915 TCTTGCAGAGGATTGTGGCAA 60.203 47.619 0.00 0.00 41.67 4.52
4136 5582 0.401356 TCTTGCAGAGGATTGTGGCA 59.599 50.000 0.00 0.00 0.00 4.92
4149 5595 2.268920 GAGGTGGCGGATCTTGCA 59.731 61.111 11.61 0.00 0.00 4.08
4150 5596 2.892425 CGAGGTGGCGGATCTTGC 60.892 66.667 0.00 0.00 0.00 4.01
4191 5641 2.440409 CCAACAAAGGTGATGAGGGAG 58.560 52.381 0.00 0.00 29.21 4.30
4206 5656 2.538141 CCTTCCCTCTGCCCCAACA 61.538 63.158 0.00 0.00 0.00 3.33
4212 5662 3.424105 ATGGCCCTTCCCTCTGCC 61.424 66.667 0.00 0.00 44.27 4.85
4214 5664 0.040204 AAACATGGCCCTTCCCTCTG 59.960 55.000 0.00 0.00 0.00 3.35
4215 5665 1.566231 CTAAACATGGCCCTTCCCTCT 59.434 52.381 0.00 0.00 0.00 3.69
4237 5688 1.211457 AGCCTAGCCTCTTCCAACATG 59.789 52.381 0.00 0.00 0.00 3.21
4238 5689 1.589414 AGCCTAGCCTCTTCCAACAT 58.411 50.000 0.00 0.00 0.00 2.71
4241 5692 1.705186 ACAAAGCCTAGCCTCTTCCAA 59.295 47.619 0.00 0.00 0.00 3.53
4242 5693 1.362224 ACAAAGCCTAGCCTCTTCCA 58.638 50.000 0.00 0.00 0.00 3.53
4251 5702 7.990886 TCCTTTTACATGGTATACAAAGCCTAG 59.009 37.037 5.01 0.00 0.00 3.02
4284 5735 4.906618 TCCATGGTAGAAAACTCTTCCAC 58.093 43.478 12.58 0.00 39.43 4.02
4296 5761 0.325296 AGTTCCCGCTCCATGGTAGA 60.325 55.000 12.58 0.00 0.00 2.59
4309 5774 4.698583 ATATATACACGAGCGAGTTCCC 57.301 45.455 0.00 0.00 0.00 3.97
4316 5781 6.759137 TCTCTTCGTTATATATACACGAGCG 58.241 40.000 19.73 16.74 43.40 5.03
4348 5813 5.393866 AGTCATAGGACAACCAAACCAATT 58.606 37.500 10.58 0.00 46.80 2.32
4363 5828 3.054434 TGTTGTGGGGATCAAGTCATAGG 60.054 47.826 0.00 0.00 0.00 2.57
4376 5841 3.517901 TCTCCTGTATAGTTGTTGTGGGG 59.482 47.826 0.00 0.00 0.00 4.96
4381 5847 8.183104 TGATCCTATCTCCTGTATAGTTGTTG 57.817 38.462 0.00 0.00 0.00 3.33
4382 5848 8.228206 TCTGATCCTATCTCCTGTATAGTTGTT 58.772 37.037 0.00 0.00 0.00 2.83
4399 5865 5.141182 GGTTGGTGTAGAGATCTGATCCTA 58.859 45.833 13.83 11.64 0.00 2.94
4400 5866 3.964031 GGTTGGTGTAGAGATCTGATCCT 59.036 47.826 13.83 12.52 0.00 3.24
4401 5867 3.706594 TGGTTGGTGTAGAGATCTGATCC 59.293 47.826 13.83 6.10 0.00 3.36
4402 5868 5.344743 TTGGTTGGTGTAGAGATCTGATC 57.655 43.478 9.65 9.65 0.00 2.92
4403 5869 5.491982 GTTTGGTTGGTGTAGAGATCTGAT 58.508 41.667 0.00 0.00 0.00 2.90
4404 5870 4.262894 GGTTTGGTTGGTGTAGAGATCTGA 60.263 45.833 0.00 0.00 0.00 3.27
4405 5871 4.003648 GGTTTGGTTGGTGTAGAGATCTG 58.996 47.826 0.00 0.00 0.00 2.90
4407 5873 4.003648 CTGGTTTGGTTGGTGTAGAGATC 58.996 47.826 0.00 0.00 0.00 2.75
4414 5880 3.904717 TGTAATCTGGTTTGGTTGGTGT 58.095 40.909 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.