Multiple sequence alignment - TraesCS6A01G305300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G305300 chr6A 100.000 4925 0 0 1 4925 538056865 538051941 0.000000e+00 9095
1 TraesCS6A01G305300 chr6A 93.094 1810 90 10 617 2401 579394185 579392386 0.000000e+00 2617
2 TraesCS6A01G305300 chr6A 91.840 1826 109 17 611 2401 583381187 583383007 0.000000e+00 2510
3 TraesCS6A01G305300 chr6A 93.849 943 46 8 611 1542 549325684 549326625 0.000000e+00 1410
4 TraesCS6A01G305300 chr6A 93.757 865 45 6 1543 2401 549357447 549358308 0.000000e+00 1290
5 TraesCS6A01G305300 chr7B 97.815 2380 48 4 2550 4925 319073191 319075570 0.000000e+00 4104
6 TraesCS6A01G305300 chr7B 85.308 1300 155 21 1122 2401 646375363 646376646 0.000000e+00 1310
7 TraesCS6A01G305300 chr2B 97.772 2379 42 7 2550 4925 109338335 109340705 0.000000e+00 4089
8 TraesCS6A01G305300 chr2B 97.993 1694 30 4 2549 4241 340548695 340547005 0.000000e+00 2937
9 TraesCS6A01G305300 chr2B 97.881 1699 31 4 2547 4241 742108595 742106898 0.000000e+00 2933
10 TraesCS6A01G305300 chr2B 97.896 903 15 4 4026 4925 699217310 699218211 0.000000e+00 1559
11 TraesCS6A01G305300 chr3A 98.111 1694 30 2 2549 4241 521605539 521603847 0.000000e+00 2950
12 TraesCS6A01G305300 chr3A 92.244 1805 114 9 615 2401 20143115 20141319 0.000000e+00 2534
13 TraesCS6A01G305300 chr3A 85.776 1842 187 48 608 2403 545278947 545280759 0.000000e+00 1881
14 TraesCS6A01G305300 chr3A 84.586 1836 205 48 611 2401 424235398 424233596 0.000000e+00 1751
15 TraesCS6A01G305300 chr6B 97.992 1693 33 1 2550 4241 633351384 633349692 0.000000e+00 2937
16 TraesCS6A01G305300 chr6B 94.215 242 10 3 1 238 585570664 585570423 2.800000e-97 366
17 TraesCS6A01G305300 chr6B 88.400 250 24 5 365 611 585570205 585569958 3.730000e-76 296
18 TraesCS6A01G305300 chr6B 88.667 150 9 2 2402 2551 585569959 585569818 5.070000e-40 176
19 TraesCS6A01G305300 chr5B 97.938 1697 32 3 2547 4241 641106235 641104540 0.000000e+00 2937
20 TraesCS6A01G305300 chr5B 97.874 1693 32 3 2550 4241 439447876 439446187 0.000000e+00 2924
21 TraesCS6A01G305300 chr5B 98.018 1312 23 3 3615 4924 526640219 526638909 0.000000e+00 2276
22 TraesCS6A01G305300 chr5B 84.834 1299 160 23 1122 2401 493565238 493563958 0.000000e+00 1273
23 TraesCS6A01G305300 chr3B 97.769 1703 32 4 2543 4241 672003931 672002231 0.000000e+00 2929
24 TraesCS6A01G305300 chr3B 98.115 902 14 2 4026 4925 542286436 542285536 0.000000e+00 1568
25 TraesCS6A01G305300 chr3B 97.894 902 17 2 4026 4925 672002656 672001755 0.000000e+00 1559
26 TraesCS6A01G305300 chr3B 97.891 901 17 2 4026 4925 744206968 744206069 0.000000e+00 1557
27 TraesCS6A01G305300 chr5A 93.256 1809 90 18 612 2401 385311701 385313496 0.000000e+00 2636
28 TraesCS6A01G305300 chr5A 85.862 1839 202 34 611 2401 452706292 452704464 0.000000e+00 1903
29 TraesCS6A01G305300 chr1A 92.754 1808 86 15 608 2398 469372552 469374331 0.000000e+00 2571
30 TraesCS6A01G305300 chr1A 85.861 1846 200 37 608 2401 579825484 579827320 0.000000e+00 1906
31 TraesCS6A01G305300 chr2A 86.149 1841 191 40 611 2401 670318053 670319879 0.000000e+00 1929
32 TraesCS6A01G305300 chr2A 86.025 1839 195 38 611 2400 755751620 755749795 0.000000e+00 1916
33 TraesCS6A01G305300 chr4A 85.722 1849 198 40 611 2408 66340583 66342416 0.000000e+00 1892
34 TraesCS6A01G305300 chr4A 86.748 1313 125 26 1122 2404 82730650 82729357 0.000000e+00 1415
35 TraesCS6A01G305300 chr3D 85.545 1854 165 52 609 2403 563988143 563986334 0.000000e+00 1844
36 TraesCS6A01G305300 chr3D 80.688 1802 260 57 664 2403 466795603 466797378 0.000000e+00 1319
37 TraesCS6A01G305300 chr4B 98.004 902 16 2 4026 4925 347641359 347642260 0.000000e+00 1565
38 TraesCS6A01G305300 chr4B 86.000 1300 142 25 1122 2400 1115784 1114504 0.000000e+00 1356
39 TraesCS6A01G305300 chr1B 98.007 903 15 3 4026 4925 465093488 465092586 0.000000e+00 1565
40 TraesCS6A01G305300 chr6D 93.333 240 12 3 1 238 391940392 391940155 7.840000e-93 351


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G305300 chr6A 538051941 538056865 4924 True 9095.000000 9095 100.000000 1 4925 1 chr6A.!!$R1 4924
1 TraesCS6A01G305300 chr6A 579392386 579394185 1799 True 2617.000000 2617 93.094000 617 2401 1 chr6A.!!$R2 1784
2 TraesCS6A01G305300 chr6A 583381187 583383007 1820 False 2510.000000 2510 91.840000 611 2401 1 chr6A.!!$F3 1790
3 TraesCS6A01G305300 chr6A 549325684 549326625 941 False 1410.000000 1410 93.849000 611 1542 1 chr6A.!!$F1 931
4 TraesCS6A01G305300 chr6A 549357447 549358308 861 False 1290.000000 1290 93.757000 1543 2401 1 chr6A.!!$F2 858
5 TraesCS6A01G305300 chr7B 319073191 319075570 2379 False 4104.000000 4104 97.815000 2550 4925 1 chr7B.!!$F1 2375
6 TraesCS6A01G305300 chr7B 646375363 646376646 1283 False 1310.000000 1310 85.308000 1122 2401 1 chr7B.!!$F2 1279
7 TraesCS6A01G305300 chr2B 109338335 109340705 2370 False 4089.000000 4089 97.772000 2550 4925 1 chr2B.!!$F1 2375
8 TraesCS6A01G305300 chr2B 340547005 340548695 1690 True 2937.000000 2937 97.993000 2549 4241 1 chr2B.!!$R1 1692
9 TraesCS6A01G305300 chr2B 742106898 742108595 1697 True 2933.000000 2933 97.881000 2547 4241 1 chr2B.!!$R2 1694
10 TraesCS6A01G305300 chr2B 699217310 699218211 901 False 1559.000000 1559 97.896000 4026 4925 1 chr2B.!!$F2 899
11 TraesCS6A01G305300 chr3A 521603847 521605539 1692 True 2950.000000 2950 98.111000 2549 4241 1 chr3A.!!$R3 1692
12 TraesCS6A01G305300 chr3A 20141319 20143115 1796 True 2534.000000 2534 92.244000 615 2401 1 chr3A.!!$R1 1786
13 TraesCS6A01G305300 chr3A 545278947 545280759 1812 False 1881.000000 1881 85.776000 608 2403 1 chr3A.!!$F1 1795
14 TraesCS6A01G305300 chr3A 424233596 424235398 1802 True 1751.000000 1751 84.586000 611 2401 1 chr3A.!!$R2 1790
15 TraesCS6A01G305300 chr6B 633349692 633351384 1692 True 2937.000000 2937 97.992000 2550 4241 1 chr6B.!!$R1 1691
16 TraesCS6A01G305300 chr6B 585569818 585570664 846 True 279.333333 366 90.427333 1 2551 3 chr6B.!!$R2 2550
17 TraesCS6A01G305300 chr5B 641104540 641106235 1695 True 2937.000000 2937 97.938000 2547 4241 1 chr5B.!!$R4 1694
18 TraesCS6A01G305300 chr5B 439446187 439447876 1689 True 2924.000000 2924 97.874000 2550 4241 1 chr5B.!!$R1 1691
19 TraesCS6A01G305300 chr5B 526638909 526640219 1310 True 2276.000000 2276 98.018000 3615 4924 1 chr5B.!!$R3 1309
20 TraesCS6A01G305300 chr5B 493563958 493565238 1280 True 1273.000000 1273 84.834000 1122 2401 1 chr5B.!!$R2 1279
21 TraesCS6A01G305300 chr3B 672001755 672003931 2176 True 2244.000000 2929 97.831500 2543 4925 2 chr3B.!!$R3 2382
22 TraesCS6A01G305300 chr3B 542285536 542286436 900 True 1568.000000 1568 98.115000 4026 4925 1 chr3B.!!$R1 899
23 TraesCS6A01G305300 chr3B 744206069 744206968 899 True 1557.000000 1557 97.891000 4026 4925 1 chr3B.!!$R2 899
24 TraesCS6A01G305300 chr5A 385311701 385313496 1795 False 2636.000000 2636 93.256000 612 2401 1 chr5A.!!$F1 1789
25 TraesCS6A01G305300 chr5A 452704464 452706292 1828 True 1903.000000 1903 85.862000 611 2401 1 chr5A.!!$R1 1790
26 TraesCS6A01G305300 chr1A 469372552 469374331 1779 False 2571.000000 2571 92.754000 608 2398 1 chr1A.!!$F1 1790
27 TraesCS6A01G305300 chr1A 579825484 579827320 1836 False 1906.000000 1906 85.861000 608 2401 1 chr1A.!!$F2 1793
28 TraesCS6A01G305300 chr2A 670318053 670319879 1826 False 1929.000000 1929 86.149000 611 2401 1 chr2A.!!$F1 1790
29 TraesCS6A01G305300 chr2A 755749795 755751620 1825 True 1916.000000 1916 86.025000 611 2400 1 chr2A.!!$R1 1789
30 TraesCS6A01G305300 chr4A 66340583 66342416 1833 False 1892.000000 1892 85.722000 611 2408 1 chr4A.!!$F1 1797
31 TraesCS6A01G305300 chr4A 82729357 82730650 1293 True 1415.000000 1415 86.748000 1122 2404 1 chr4A.!!$R1 1282
32 TraesCS6A01G305300 chr3D 563986334 563988143 1809 True 1844.000000 1844 85.545000 609 2403 1 chr3D.!!$R1 1794
33 TraesCS6A01G305300 chr3D 466795603 466797378 1775 False 1319.000000 1319 80.688000 664 2403 1 chr3D.!!$F1 1739
34 TraesCS6A01G305300 chr4B 347641359 347642260 901 False 1565.000000 1565 98.004000 4026 4925 1 chr4B.!!$F1 899
35 TraesCS6A01G305300 chr4B 1114504 1115784 1280 True 1356.000000 1356 86.000000 1122 2400 1 chr4B.!!$R1 1278
36 TraesCS6A01G305300 chr1B 465092586 465093488 902 True 1565.000000 1565 98.007000 4026 4925 1 chr1B.!!$R1 899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 590 0.036765 GTCAGCATCACGGGTTGGTA 60.037 55.0 0.00 0.0 0.00 3.25 F
552 723 0.323302 TTCACCGTGCCTGATTGCTA 59.677 50.0 0.00 0.0 0.00 3.49 F
2505 2826 0.099436 CGGCCATAGCAAGCTGTTTC 59.901 55.0 2.24 0.0 42.56 2.78 F
3818 4148 0.537188 TTTCACGAGGGGAGAGATGC 59.463 55.0 0.00 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2373 2694 0.250124 TTCACCGCACGACCTCAAAT 60.250 50.0 0.00 0.0 0.00 2.32 R
2508 2829 0.597568 CACCGACGTAGGTTGTACCA 59.402 55.0 18.52 0.0 43.00 3.25 R
4018 4348 0.319083 TACGTGGTCGCATTGGTTCT 59.681 50.0 0.00 0.0 41.18 3.01 R
4845 5812 5.248477 TGTTTGGTAGCAGAGATTAGGAAGT 59.752 40.0 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 150 1.026584 TCGTTGTGTCGACAAGGAGA 58.973 50.000 21.95 14.64 46.80 3.71
208 213 5.435686 TGGCGGAATAATGGAGCTAATAT 57.564 39.130 0.00 0.00 0.00 1.28
209 214 5.185454 TGGCGGAATAATGGAGCTAATATG 58.815 41.667 0.00 0.00 0.00 1.78
234 239 3.374042 TCCTTGTGGGTTGAAAGAACA 57.626 42.857 0.00 0.00 36.25 3.18
238 243 3.080300 TGTGGGTTGAAAGAACACTGT 57.920 42.857 0.00 0.00 33.44 3.55
240 245 2.357952 GTGGGTTGAAAGAACACTGTCC 59.642 50.000 0.00 0.00 0.00 4.02
242 247 2.618709 GGGTTGAAAGAACACTGTCCTG 59.381 50.000 0.00 0.00 0.00 3.86
243 248 2.618709 GGTTGAAAGAACACTGTCCTGG 59.381 50.000 0.00 0.00 0.00 4.45
244 249 3.279434 GTTGAAAGAACACTGTCCTGGT 58.721 45.455 0.00 0.00 0.00 4.00
246 251 2.771943 TGAAAGAACACTGTCCTGGTCT 59.228 45.455 0.00 0.00 40.11 3.85
247 252 2.918712 AAGAACACTGTCCTGGTCTG 57.081 50.000 0.00 0.00 37.21 3.51
248 253 1.051812 AGAACACTGTCCTGGTCTGG 58.948 55.000 0.00 0.00 36.81 3.86
249 254 0.759346 GAACACTGTCCTGGTCTGGT 59.241 55.000 0.00 0.00 0.00 4.00
250 255 1.141053 GAACACTGTCCTGGTCTGGTT 59.859 52.381 0.00 0.00 0.00 3.67
251 256 1.213296 ACACTGTCCTGGTCTGGTTT 58.787 50.000 0.00 0.00 0.00 3.27
274 279 4.424061 TTGTTGTGAGATGCTGTTATGC 57.576 40.909 0.00 0.00 0.00 3.14
275 280 3.678289 TGTTGTGAGATGCTGTTATGCT 58.322 40.909 0.00 0.00 0.00 3.79
276 281 3.686241 TGTTGTGAGATGCTGTTATGCTC 59.314 43.478 0.00 0.00 0.00 4.26
277 282 2.910199 TGTGAGATGCTGTTATGCTCC 58.090 47.619 0.00 0.00 0.00 4.70
278 283 1.863454 GTGAGATGCTGTTATGCTCCG 59.137 52.381 0.00 0.00 0.00 4.63
279 284 1.202568 TGAGATGCTGTTATGCTCCGG 60.203 52.381 0.00 0.00 0.00 5.14
280 285 1.069204 GAGATGCTGTTATGCTCCGGA 59.931 52.381 2.93 2.93 0.00 5.14
281 286 1.069823 AGATGCTGTTATGCTCCGGAG 59.930 52.381 27.83 27.83 0.00 4.63
282 287 0.833287 ATGCTGTTATGCTCCGGAGT 59.167 50.000 31.43 16.28 0.00 3.85
283 288 0.175760 TGCTGTTATGCTCCGGAGTC 59.824 55.000 31.43 23.14 0.00 3.36
284 289 0.530870 GCTGTTATGCTCCGGAGTCC 60.531 60.000 31.43 17.08 0.00 3.85
295 300 2.494677 CGGAGTCCGGTGAAGATCT 58.505 57.895 24.39 0.00 44.15 2.75
296 301 0.382515 CGGAGTCCGGTGAAGATCTC 59.617 60.000 24.39 0.00 44.15 2.75
297 302 1.475403 GGAGTCCGGTGAAGATCTCA 58.525 55.000 0.00 0.00 0.00 3.27
298 303 1.825474 GGAGTCCGGTGAAGATCTCAA 59.175 52.381 0.00 0.00 35.22 3.02
299 304 2.417515 GGAGTCCGGTGAAGATCTCAAC 60.418 54.545 0.00 0.00 38.52 3.18
300 305 2.231478 GAGTCCGGTGAAGATCTCAACA 59.769 50.000 0.00 0.00 42.46 3.33
301 306 2.632996 AGTCCGGTGAAGATCTCAACAA 59.367 45.455 0.00 0.00 42.46 2.83
302 307 3.071023 AGTCCGGTGAAGATCTCAACAAA 59.929 43.478 0.00 0.00 42.46 2.83
303 308 4.003648 GTCCGGTGAAGATCTCAACAAAT 58.996 43.478 0.00 0.00 42.46 2.32
304 309 4.002982 TCCGGTGAAGATCTCAACAAATG 58.997 43.478 0.00 0.00 42.46 2.32
305 310 3.426695 CCGGTGAAGATCTCAACAAATGC 60.427 47.826 0.00 0.00 42.46 3.56
306 311 3.189080 CGGTGAAGATCTCAACAAATGCA 59.811 43.478 0.00 0.00 42.46 3.96
307 312 4.670992 CGGTGAAGATCTCAACAAATGCAG 60.671 45.833 0.00 0.00 42.46 4.41
308 313 4.456911 GGTGAAGATCTCAACAAATGCAGA 59.543 41.667 0.00 0.00 41.87 4.26
309 314 5.048504 GGTGAAGATCTCAACAAATGCAGAA 60.049 40.000 0.00 0.00 41.87 3.02
310 315 6.349944 GGTGAAGATCTCAACAAATGCAGAAT 60.350 38.462 0.00 0.00 41.87 2.40
311 316 6.527023 GTGAAGATCTCAACAAATGCAGAATG 59.473 38.462 0.00 0.00 35.22 2.67
312 317 6.208007 TGAAGATCTCAACAAATGCAGAATGT 59.792 34.615 0.00 0.00 39.31 2.71
313 318 5.950883 AGATCTCAACAAATGCAGAATGTG 58.049 37.500 0.00 0.00 39.31 3.21
322 327 3.891786 GCAGAATGTGCGTGATCAG 57.108 52.632 0.00 0.00 43.99 2.90
323 328 0.376152 GCAGAATGTGCGTGATCAGG 59.624 55.000 11.07 11.07 43.99 3.86
324 329 1.730501 CAGAATGTGCGTGATCAGGT 58.269 50.000 16.27 0.00 0.00 4.00
325 330 2.079158 CAGAATGTGCGTGATCAGGTT 58.921 47.619 16.27 3.25 0.00 3.50
326 331 2.094894 CAGAATGTGCGTGATCAGGTTC 59.905 50.000 16.27 11.61 0.00 3.62
327 332 1.398390 GAATGTGCGTGATCAGGTTCC 59.602 52.381 16.27 5.87 0.00 3.62
328 333 0.324614 ATGTGCGTGATCAGGTTCCA 59.675 50.000 16.27 10.72 0.00 3.53
347 352 6.657541 GGTTCCAGAAAACAATATGTCACCTA 59.342 38.462 0.00 0.00 0.00 3.08
355 364 5.179452 ACAATATGTCACCTACCTTTGCT 57.821 39.130 0.00 0.00 0.00 3.91
363 372 1.075536 ACCTACCTTTGCTTCCTTGGG 59.924 52.381 0.00 0.00 0.00 4.12
369 378 2.038659 CTTTGCTTCCTTGGGTTGGAA 58.961 47.619 0.00 0.00 40.85 3.53
373 382 1.270305 GCTTCCTTGGGTTGGAAAAGC 60.270 52.381 0.00 0.00 42.29 3.51
374 383 1.344438 CTTCCTTGGGTTGGAAAAGCC 59.656 52.381 0.00 0.00 42.29 4.35
393 562 1.273211 CCAGGATCATTGGGGTTGGTT 60.273 52.381 7.44 0.00 31.87 3.67
394 563 2.539302 CAGGATCATTGGGGTTGGTTT 58.461 47.619 0.00 0.00 0.00 3.27
395 564 2.905736 CAGGATCATTGGGGTTGGTTTT 59.094 45.455 0.00 0.00 0.00 2.43
398 567 3.582647 GGATCATTGGGGTTGGTTTTTCT 59.417 43.478 0.00 0.00 0.00 2.52
408 577 0.181587 TGGTTTTTCTCCGGTCAGCA 59.818 50.000 0.00 0.00 0.00 4.41
421 590 0.036765 GTCAGCATCACGGGTTGGTA 60.037 55.000 0.00 0.00 0.00 3.25
443 612 1.090052 GCCAATTCTTCCTCCGACCG 61.090 60.000 0.00 0.00 0.00 4.79
490 659 4.437239 GGAAGCATCATCGTCCATATAGG 58.563 47.826 0.00 0.00 35.18 2.57
491 660 4.160439 GGAAGCATCATCGTCCATATAGGA 59.840 45.833 0.00 0.00 46.75 2.94
499 669 3.543112 TCCATATAGGACCGCACCA 57.457 52.632 0.00 0.00 43.07 4.17
552 723 0.323302 TTCACCGTGCCTGATTGCTA 59.677 50.000 0.00 0.00 0.00 3.49
568 739 5.072193 TGATTGCTAAATAGATCTGGAGGCA 59.928 40.000 5.18 6.79 0.00 4.75
603 774 2.352960 GCCAAATGTCTCGTCCTGAATC 59.647 50.000 0.00 0.00 0.00 2.52
724 896 5.425630 GACCTATCCTATCCGTTTTGTGTT 58.574 41.667 0.00 0.00 0.00 3.32
888 1063 2.001803 CCCCACCTGTCATCCACAT 58.998 57.895 0.00 0.00 33.23 3.21
895 1070 2.237143 ACCTGTCATCCACATGTCGAAT 59.763 45.455 0.00 0.00 33.23 3.34
931 1106 1.180456 TAAGTGGGAAGCGTGGACGA 61.180 55.000 2.73 0.00 43.02 4.20
1037 1221 3.845259 GCCGCCCACCTCGTCATA 61.845 66.667 0.00 0.00 0.00 2.15
1329 1539 2.765807 CCCGATCCCTCCTGTGCT 60.766 66.667 0.00 0.00 0.00 4.40
1406 1623 1.726791 GTTCTACGACGACAGGTACGA 59.273 52.381 0.00 0.00 34.70 3.43
1755 2010 1.229625 ATGGTGGCTGTGGAGGAGA 60.230 57.895 0.00 0.00 0.00 3.71
1756 2011 1.270414 ATGGTGGCTGTGGAGGAGAG 61.270 60.000 0.00 0.00 0.00 3.20
2150 2437 3.569194 TTAAGTGGCTGTGGAAACTGA 57.431 42.857 0.00 0.00 0.00 3.41
2321 2642 1.594293 CTGACAAAGGCGGACACGT 60.594 57.895 0.00 0.00 43.45 4.49
2373 2694 3.975246 GGCCAATCCGAACGTTCA 58.025 55.556 26.71 9.90 0.00 3.18
2406 2727 1.737793 CGGTGAAGTTGGCCTCATAAC 59.262 52.381 3.32 0.00 0.00 1.89
2453 2774 6.903534 ACATAAGAAAGGACAAGAGGATAGGA 59.096 38.462 0.00 0.00 0.00 2.94
2477 2798 1.890979 GATGGCTCATCCGGTGCAG 60.891 63.158 0.00 0.00 37.74 4.41
2479 2800 3.785859 GGCTCATCCGGTGCAGGA 61.786 66.667 0.00 0.00 45.54 3.86
2501 2822 0.882042 CCTACGGCCATAGCAAGCTG 60.882 60.000 2.24 0.00 42.56 4.24
2502 2823 2.671070 ACGGCCATAGCAAGCTGT 59.329 55.556 2.24 0.00 43.72 4.40
2503 2824 0.251916 TACGGCCATAGCAAGCTGTT 59.748 50.000 2.24 0.00 46.31 3.16
2505 2826 0.099436 CGGCCATAGCAAGCTGTTTC 59.901 55.000 2.24 0.00 42.56 2.78
2506 2827 1.176527 GGCCATAGCAAGCTGTTTCA 58.823 50.000 4.53 0.00 42.56 2.69
2507 2828 1.133790 GGCCATAGCAAGCTGTTTCAG 59.866 52.381 4.53 0.00 42.56 3.02
2508 2829 1.815003 GCCATAGCAAGCTGTTTCAGT 59.185 47.619 4.53 0.00 39.53 3.41
2509 2830 2.415090 GCCATAGCAAGCTGTTTCAGTG 60.415 50.000 4.53 0.00 39.53 3.66
2519 2840 3.389983 AGCTGTTTCAGTGGTACAACCTA 59.610 43.478 0.00 0.00 44.16 3.08
2531 2852 1.736645 CAACCTACGTCGGTGCAGG 60.737 63.158 13.16 5.31 37.36 4.85
2544 2865 3.055458 TCGGTGCAGGAAGTGATCAATTA 60.055 43.478 8.63 0.00 0.00 1.40
2601 2922 5.245301 GGGGCCACATTAACTTTAAGAGTTT 59.755 40.000 4.39 0.00 46.34 2.66
2865 3192 6.715264 CAGGTTCAAGGTAGTAACAAGGATTT 59.285 38.462 0.00 0.00 0.00 2.17
3043 3370 1.522668 CAAACTGCTCGGATGAACCA 58.477 50.000 0.00 0.00 38.90 3.67
3440 3767 1.725665 CGAACCGACGATAGCCTCA 59.274 57.895 0.00 0.00 42.67 3.86
3459 3786 2.415010 CCCATCTCTCGACGCAGG 59.585 66.667 0.00 0.00 0.00 4.85
3817 4147 3.334583 TTTTTCACGAGGGGAGAGATG 57.665 47.619 0.00 0.00 0.00 2.90
3818 4148 0.537188 TTTCACGAGGGGAGAGATGC 59.463 55.000 0.00 0.00 0.00 3.91
3819 4149 1.667154 TTCACGAGGGGAGAGATGCG 61.667 60.000 0.00 0.00 0.00 4.73
3820 4150 2.121538 CACGAGGGGAGAGATGCGA 61.122 63.158 0.00 0.00 0.00 5.10
3821 4151 2.122167 ACGAGGGGAGAGATGCGAC 61.122 63.158 0.00 0.00 0.00 5.19
3822 4152 2.851071 CGAGGGGAGAGATGCGACC 61.851 68.421 0.00 0.00 0.00 4.79
3823 4153 1.758514 GAGGGGAGAGATGCGACCA 60.759 63.158 0.00 0.00 0.00 4.02
3824 4154 2.022240 GAGGGGAGAGATGCGACCAC 62.022 65.000 0.00 0.00 0.00 4.16
3825 4155 2.105128 GGGAGAGATGCGACCACG 59.895 66.667 0.00 0.00 42.93 4.94
3826 4156 2.711922 GGGAGAGATGCGACCACGT 61.712 63.158 0.00 0.00 41.98 4.49
3827 4157 1.517257 GGAGAGATGCGACCACGTG 60.517 63.158 9.08 9.08 41.98 4.49
3828 4158 2.125912 AGAGATGCGACCACGTGC 60.126 61.111 10.91 0.00 41.98 5.34
3829 4159 2.432456 GAGATGCGACCACGTGCA 60.432 61.111 10.91 5.21 46.51 4.57
3830 4160 2.433145 AGATGCGACCACGTGCAG 60.433 61.111 10.91 4.35 45.52 4.41
3831 4161 2.432456 GATGCGACCACGTGCAGA 60.432 61.111 10.91 0.00 45.52 4.26
3832 4162 1.811266 GATGCGACCACGTGCAGAT 60.811 57.895 10.91 0.00 45.52 2.90
3833 4163 1.361668 GATGCGACCACGTGCAGATT 61.362 55.000 10.91 0.00 45.52 2.40
3834 4164 1.361668 ATGCGACCACGTGCAGATTC 61.362 55.000 10.91 0.00 45.52 2.52
3835 4165 2.740714 GCGACCACGTGCAGATTCC 61.741 63.158 10.91 0.00 41.98 3.01
3836 4166 1.374125 CGACCACGTGCAGATTCCA 60.374 57.895 10.91 0.00 34.56 3.53
3837 4167 0.740868 CGACCACGTGCAGATTCCAT 60.741 55.000 10.91 0.00 34.56 3.41
3838 4168 1.470805 CGACCACGTGCAGATTCCATA 60.471 52.381 10.91 0.00 34.56 2.74
3839 4169 2.627945 GACCACGTGCAGATTCCATAA 58.372 47.619 10.91 0.00 0.00 1.90
3840 4170 3.206150 GACCACGTGCAGATTCCATAAT 58.794 45.455 10.91 0.00 0.00 1.28
3841 4171 4.377021 GACCACGTGCAGATTCCATAATA 58.623 43.478 10.91 0.00 0.00 0.98
3842 4172 4.776349 ACCACGTGCAGATTCCATAATAA 58.224 39.130 10.91 0.00 0.00 1.40
3843 4173 5.189928 ACCACGTGCAGATTCCATAATAAA 58.810 37.500 10.91 0.00 0.00 1.40
3844 4174 5.827797 ACCACGTGCAGATTCCATAATAAAT 59.172 36.000 10.91 0.00 0.00 1.40
3845 4175 6.321181 ACCACGTGCAGATTCCATAATAAATT 59.679 34.615 10.91 0.00 0.00 1.82
3846 4176 7.500892 ACCACGTGCAGATTCCATAATAAATTA 59.499 33.333 10.91 0.00 0.00 1.40
3847 4177 8.349245 CCACGTGCAGATTCCATAATAAATTAA 58.651 33.333 10.91 0.00 0.00 1.40
3848 4178 9.897744 CACGTGCAGATTCCATAATAAATTAAT 57.102 29.630 0.82 0.00 0.00 1.40
3873 4203 9.628500 ATTAGGTCCATAACAGGATTTCTTTAC 57.372 33.333 0.00 0.00 40.42 2.01
3874 4204 7.027874 AGGTCCATAACAGGATTTCTTTACA 57.972 36.000 0.00 0.00 40.42 2.41
3875 4205 7.466804 AGGTCCATAACAGGATTTCTTTACAA 58.533 34.615 0.00 0.00 40.42 2.41
3876 4206 8.116026 AGGTCCATAACAGGATTTCTTTACAAT 58.884 33.333 0.00 0.00 40.42 2.71
3877 4207 8.190784 GGTCCATAACAGGATTTCTTTACAATG 58.809 37.037 0.00 0.00 40.42 2.82
3878 4208 7.702348 GTCCATAACAGGATTTCTTTACAATGC 59.298 37.037 0.00 0.00 40.42 3.56
3879 4209 6.692681 CCATAACAGGATTTCTTTACAATGCG 59.307 38.462 0.00 0.00 0.00 4.73
3880 4210 5.705609 AACAGGATTTCTTTACAATGCGT 57.294 34.783 0.00 0.00 0.00 5.24
3881 4211 5.705609 ACAGGATTTCTTTACAATGCGTT 57.294 34.783 0.00 0.00 0.00 4.84
3882 4212 6.811253 ACAGGATTTCTTTACAATGCGTTA 57.189 33.333 0.00 0.00 0.00 3.18
3883 4213 7.209471 ACAGGATTTCTTTACAATGCGTTAA 57.791 32.000 0.00 0.00 0.00 2.01
3884 4214 7.305474 ACAGGATTTCTTTACAATGCGTTAAG 58.695 34.615 0.00 0.00 35.92 1.85
3885 4215 7.174253 ACAGGATTTCTTTACAATGCGTTAAGA 59.826 33.333 0.00 0.00 40.55 2.10
3886 4216 8.184192 CAGGATTTCTTTACAATGCGTTAAGAT 58.816 33.333 3.74 0.00 41.54 2.40
3887 4217 8.739972 AGGATTTCTTTACAATGCGTTAAGATT 58.260 29.630 3.74 0.00 41.54 2.40
3888 4218 9.353999 GGATTTCTTTACAATGCGTTAAGATTT 57.646 29.630 3.74 0.00 41.54 2.17
3891 4221 8.868744 TTCTTTACAATGCGTTAAGATTTACG 57.131 30.769 3.74 0.10 41.54 3.18
3892 4222 8.020861 TCTTTACAATGCGTTAAGATTTACGT 57.979 30.769 6.07 0.00 38.12 3.57
3893 4223 7.953173 TCTTTACAATGCGTTAAGATTTACGTG 59.047 33.333 0.00 0.32 38.12 4.49
3894 4224 5.600908 ACAATGCGTTAAGATTTACGTGT 57.399 34.783 0.00 0.85 39.80 4.49
3895 4225 5.992729 ACAATGCGTTAAGATTTACGTGTT 58.007 33.333 0.00 0.00 39.80 3.32
3896 4226 7.119605 ACAATGCGTTAAGATTTACGTGTTA 57.880 32.000 0.00 0.00 39.80 2.41
3897 4227 7.231607 ACAATGCGTTAAGATTTACGTGTTAG 58.768 34.615 0.00 0.00 39.80 2.34
3898 4228 6.956299 ATGCGTTAAGATTTACGTGTTAGT 57.044 33.333 0.00 0.00 39.80 2.24
3899 4229 6.768029 TGCGTTAAGATTTACGTGTTAGTT 57.232 33.333 0.00 0.00 39.80 2.24
3900 4230 7.176285 TGCGTTAAGATTTACGTGTTAGTTT 57.824 32.000 0.00 0.00 39.80 2.66
3901 4231 7.629130 TGCGTTAAGATTTACGTGTTAGTTTT 58.371 30.769 0.00 0.00 39.80 2.43
3902 4232 7.793427 TGCGTTAAGATTTACGTGTTAGTTTTC 59.207 33.333 0.00 0.00 39.80 2.29
3903 4233 8.006027 GCGTTAAGATTTACGTGTTAGTTTTCT 58.994 33.333 0.00 0.00 39.80 2.52
3904 4234 9.853921 CGTTAAGATTTACGTGTTAGTTTTCTT 57.146 29.630 0.00 0.00 33.33 2.52
3928 4258 9.941664 CTTAATAAAGAAATGCACTGATGTAGG 57.058 33.333 0.00 0.00 34.37 3.18
3929 4259 6.949352 ATAAAGAAATGCACTGATGTAGGG 57.051 37.500 0.00 0.00 0.00 3.53
3930 4260 4.574674 AAGAAATGCACTGATGTAGGGA 57.425 40.909 0.00 0.00 0.00 4.20
3931 4261 4.785346 AGAAATGCACTGATGTAGGGAT 57.215 40.909 0.00 0.00 0.00 3.85
3932 4262 4.712476 AGAAATGCACTGATGTAGGGATC 58.288 43.478 0.00 0.00 0.00 3.36
3933 4263 2.827800 ATGCACTGATGTAGGGATCG 57.172 50.000 0.00 0.00 0.00 3.69
3934 4264 1.775385 TGCACTGATGTAGGGATCGA 58.225 50.000 0.00 0.00 0.00 3.59
3935 4265 2.319844 TGCACTGATGTAGGGATCGAT 58.680 47.619 0.00 0.00 0.00 3.59
3936 4266 2.700371 TGCACTGATGTAGGGATCGATT 59.300 45.455 0.00 0.00 0.00 3.34
3937 4267 3.062763 GCACTGATGTAGGGATCGATTG 58.937 50.000 0.00 0.00 0.00 2.67
3938 4268 3.243873 GCACTGATGTAGGGATCGATTGA 60.244 47.826 0.00 0.00 0.00 2.57
3939 4269 4.562347 GCACTGATGTAGGGATCGATTGAT 60.562 45.833 0.00 0.00 37.60 2.57
3940 4270 5.545588 CACTGATGTAGGGATCGATTGATT 58.454 41.667 0.00 0.00 34.09 2.57
3941 4271 5.636965 CACTGATGTAGGGATCGATTGATTC 59.363 44.000 0.00 0.00 34.09 2.52
3957 4287 8.179148 CGATTGATTCGGATAAGGAAAGATAG 57.821 38.462 0.00 0.00 44.28 2.08
3958 4288 8.029522 CGATTGATTCGGATAAGGAAAGATAGA 58.970 37.037 0.00 0.00 44.28 1.98
3959 4289 9.883142 GATTGATTCGGATAAGGAAAGATAGAT 57.117 33.333 0.00 0.00 0.00 1.98
3961 4291 9.712305 TTGATTCGGATAAGGAAAGATAGATTC 57.288 33.333 0.00 0.00 0.00 2.52
3962 4292 8.029522 TGATTCGGATAAGGAAAGATAGATTCG 58.970 37.037 0.00 0.00 0.00 3.34
3963 4293 6.896021 TCGGATAAGGAAAGATAGATTCGT 57.104 37.500 0.00 0.00 0.00 3.85
3964 4294 6.678878 TCGGATAAGGAAAGATAGATTCGTG 58.321 40.000 0.00 0.00 0.00 4.35
3965 4295 6.489022 TCGGATAAGGAAAGATAGATTCGTGA 59.511 38.462 0.00 0.00 0.00 4.35
3966 4296 7.176865 TCGGATAAGGAAAGATAGATTCGTGAT 59.823 37.037 0.00 0.00 0.00 3.06
3967 4297 7.486551 CGGATAAGGAAAGATAGATTCGTGATC 59.513 40.741 0.00 0.00 34.17 2.92
3968 4298 8.527810 GGATAAGGAAAGATAGATTCGTGATCT 58.472 37.037 8.63 8.63 46.74 2.75
3969 4299 9.921637 GATAAGGAAAGATAGATTCGTGATCTT 57.078 33.333 8.84 5.97 42.55 2.40
3972 4302 8.430801 AGGAAAGATAGATTCGTGATCTTTTG 57.569 34.615 17.68 0.00 45.47 2.44
3973 4303 8.043710 AGGAAAGATAGATTCGTGATCTTTTGT 58.956 33.333 17.68 10.37 45.47 2.83
3974 4304 9.314321 GGAAAGATAGATTCGTGATCTTTTGTA 57.686 33.333 17.68 0.00 45.47 2.41
3977 4307 9.823647 AAGATAGATTCGTGATCTTTTGTATGT 57.176 29.630 8.84 0.00 42.55 2.29
3978 4308 9.823647 AGATAGATTCGTGATCTTTTGTATGTT 57.176 29.630 8.84 0.00 42.55 2.71
3981 4311 8.425577 AGATTCGTGATCTTTTGTATGTTAGG 57.574 34.615 0.00 0.00 42.55 2.69
3982 4312 8.258007 AGATTCGTGATCTTTTGTATGTTAGGA 58.742 33.333 0.00 0.00 42.55 2.94
3983 4313 8.786826 ATTCGTGATCTTTTGTATGTTAGGAA 57.213 30.769 0.00 0.00 0.00 3.36
3984 4314 8.610248 TTCGTGATCTTTTGTATGTTAGGAAA 57.390 30.769 0.00 0.00 0.00 3.13
3985 4315 8.786826 TCGTGATCTTTTGTATGTTAGGAAAT 57.213 30.769 0.00 0.00 0.00 2.17
3986 4316 9.226606 TCGTGATCTTTTGTATGTTAGGAAATT 57.773 29.630 0.00 0.00 0.00 1.82
3992 4322 9.802039 TCTTTTGTATGTTAGGAAATTAGTGGT 57.198 29.630 0.00 0.00 0.00 4.16
3996 4326 7.822658 TGTATGTTAGGAAATTAGTGGTTTGC 58.177 34.615 0.00 0.00 0.00 3.68
3997 4327 6.909550 ATGTTAGGAAATTAGTGGTTTGCA 57.090 33.333 0.00 0.00 30.42 4.08
3998 4328 6.716934 TGTTAGGAAATTAGTGGTTTGCAA 57.283 33.333 0.00 0.00 30.42 4.08
3999 4329 6.744112 TGTTAGGAAATTAGTGGTTTGCAAG 58.256 36.000 0.00 0.00 30.42 4.01
4000 4330 4.871933 AGGAAATTAGTGGTTTGCAAGG 57.128 40.909 0.00 0.00 30.42 3.61
4001 4331 4.479158 AGGAAATTAGTGGTTTGCAAGGA 58.521 39.130 0.00 0.00 30.42 3.36
4002 4332 4.898861 AGGAAATTAGTGGTTTGCAAGGAA 59.101 37.500 0.00 0.00 30.42 3.36
4003 4333 5.365314 AGGAAATTAGTGGTTTGCAAGGAAA 59.635 36.000 0.00 0.00 30.42 3.13
4004 4334 5.696270 GGAAATTAGTGGTTTGCAAGGAAAG 59.304 40.000 0.00 0.00 0.00 2.62
4005 4335 6.462347 GGAAATTAGTGGTTTGCAAGGAAAGA 60.462 38.462 0.00 0.00 0.00 2.52
4006 4336 5.712152 ATTAGTGGTTTGCAAGGAAAGAG 57.288 39.130 0.00 0.00 0.00 2.85
4007 4337 3.018423 AGTGGTTTGCAAGGAAAGAGT 57.982 42.857 0.00 0.00 0.00 3.24
4008 4338 2.689983 AGTGGTTTGCAAGGAAAGAGTG 59.310 45.455 0.00 0.00 0.00 3.51
4009 4339 2.031120 TGGTTTGCAAGGAAAGAGTGG 58.969 47.619 0.00 0.00 0.00 4.00
4010 4340 2.306847 GGTTTGCAAGGAAAGAGTGGA 58.693 47.619 0.00 0.00 0.00 4.02
4011 4341 2.294512 GGTTTGCAAGGAAAGAGTGGAG 59.705 50.000 0.00 0.00 0.00 3.86
4012 4342 3.214328 GTTTGCAAGGAAAGAGTGGAGA 58.786 45.455 0.00 0.00 0.00 3.71
4013 4343 3.576078 TTGCAAGGAAAGAGTGGAGAA 57.424 42.857 0.00 0.00 0.00 2.87
4014 4344 3.576078 TGCAAGGAAAGAGTGGAGAAA 57.424 42.857 0.00 0.00 0.00 2.52
4015 4345 3.897239 TGCAAGGAAAGAGTGGAGAAAA 58.103 40.909 0.00 0.00 0.00 2.29
4016 4346 4.277476 TGCAAGGAAAGAGTGGAGAAAAA 58.723 39.130 0.00 0.00 0.00 1.94
4038 4368 1.066430 AGAACCAATGCGACCACGTAT 60.066 47.619 0.00 0.00 45.67 3.06
4451 5411 5.011738 TGGAGAGAAAAAGAACCAGTACGAT 59.988 40.000 0.00 0.00 0.00 3.73
4719 5686 2.747446 GCGAGCAGATTCCCTTAAAACA 59.253 45.455 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.729140 GCTTGCGATTCCGTTTGTGG 60.729 55.000 0.00 0.00 38.24 4.17
85 86 2.415843 GCCGCGCTCTACATGGTA 59.584 61.111 5.56 0.00 0.00 3.25
149 150 4.936685 AGAAAAGGGATACTCCAGCTTT 57.063 40.909 0.00 0.00 38.64 3.51
163 164 7.095649 GCCATTTTACAGCTTACAAAGAAAAGG 60.096 37.037 0.00 0.00 0.00 3.11
208 213 3.874383 TTCAACCCACAAGGATCTTCA 57.126 42.857 0.00 0.00 39.89 3.02
209 214 4.398319 TCTTTCAACCCACAAGGATCTTC 58.602 43.478 0.00 0.00 39.89 2.87
221 226 2.618709 CAGGACAGTGTTCTTTCAACCC 59.381 50.000 0.00 0.00 0.00 4.11
250 255 5.691305 GCATAACAGCATCTCACAACAAAAA 59.309 36.000 0.00 0.00 0.00 1.94
251 256 5.009911 AGCATAACAGCATCTCACAACAAAA 59.990 36.000 0.00 0.00 36.85 2.44
254 259 3.678289 AGCATAACAGCATCTCACAACA 58.322 40.909 0.00 0.00 36.85 3.33
255 260 3.064545 GGAGCATAACAGCATCTCACAAC 59.935 47.826 0.00 0.00 36.85 3.32
257 262 2.739609 CGGAGCATAACAGCATCTCACA 60.740 50.000 0.00 0.00 36.85 3.58
258 263 1.863454 CGGAGCATAACAGCATCTCAC 59.137 52.381 0.00 0.00 36.85 3.51
259 264 1.202568 CCGGAGCATAACAGCATCTCA 60.203 52.381 0.00 0.00 36.85 3.27
260 265 1.069204 TCCGGAGCATAACAGCATCTC 59.931 52.381 0.00 0.00 36.85 2.75
261 266 1.069823 CTCCGGAGCATAACAGCATCT 59.930 52.381 20.67 0.00 36.85 2.90
262 267 1.202580 ACTCCGGAGCATAACAGCATC 60.203 52.381 31.56 0.00 36.85 3.91
263 268 0.833287 ACTCCGGAGCATAACAGCAT 59.167 50.000 31.56 4.57 36.85 3.79
264 269 0.175760 GACTCCGGAGCATAACAGCA 59.824 55.000 31.56 0.00 36.85 4.41
265 270 0.530870 GGACTCCGGAGCATAACAGC 60.531 60.000 31.56 10.02 0.00 4.40
266 271 0.249073 CGGACTCCGGAGCATAACAG 60.249 60.000 31.56 13.78 44.15 3.16
267 272 1.813859 CGGACTCCGGAGCATAACA 59.186 57.895 31.56 0.00 44.15 2.41
268 273 4.732106 CGGACTCCGGAGCATAAC 57.268 61.111 31.56 16.35 44.15 1.89
278 283 1.475403 TGAGATCTTCACCGGACTCC 58.525 55.000 9.46 0.00 0.00 3.85
279 284 2.231478 TGTTGAGATCTTCACCGGACTC 59.769 50.000 9.46 5.70 34.94 3.36
280 285 2.248248 TGTTGAGATCTTCACCGGACT 58.752 47.619 9.46 0.00 34.94 3.85
281 286 2.743636 TGTTGAGATCTTCACCGGAC 57.256 50.000 9.46 0.00 34.94 4.79
282 287 3.762407 TTTGTTGAGATCTTCACCGGA 57.238 42.857 9.46 0.00 34.94 5.14
283 288 3.426695 GCATTTGTTGAGATCTTCACCGG 60.427 47.826 0.00 0.00 34.94 5.28
284 289 3.189080 TGCATTTGTTGAGATCTTCACCG 59.811 43.478 0.00 0.00 34.94 4.94
285 290 4.456911 TCTGCATTTGTTGAGATCTTCACC 59.543 41.667 0.00 0.00 34.94 4.02
286 291 5.618056 TCTGCATTTGTTGAGATCTTCAC 57.382 39.130 0.00 0.00 34.94 3.18
287 292 6.208007 ACATTCTGCATTTGTTGAGATCTTCA 59.792 34.615 0.00 0.00 0.00 3.02
288 293 6.527023 CACATTCTGCATTTGTTGAGATCTTC 59.473 38.462 0.00 0.00 0.00 2.87
289 294 6.387465 CACATTCTGCATTTGTTGAGATCTT 58.613 36.000 0.00 0.00 0.00 2.40
290 295 5.621555 GCACATTCTGCATTTGTTGAGATCT 60.622 40.000 0.00 0.00 46.29 2.75
291 296 4.561606 GCACATTCTGCATTTGTTGAGATC 59.438 41.667 0.00 0.00 46.29 2.75
292 297 4.491676 GCACATTCTGCATTTGTTGAGAT 58.508 39.130 0.00 0.00 46.29 2.75
293 298 3.904571 GCACATTCTGCATTTGTTGAGA 58.095 40.909 0.00 0.00 46.29 3.27
304 309 0.376152 CCTGATCACGCACATTCTGC 59.624 55.000 0.00 0.00 43.21 4.26
305 310 1.730501 ACCTGATCACGCACATTCTG 58.269 50.000 0.00 0.00 0.00 3.02
306 311 2.350522 GAACCTGATCACGCACATTCT 58.649 47.619 0.00 0.00 0.00 2.40
307 312 1.398390 GGAACCTGATCACGCACATTC 59.602 52.381 0.00 0.00 0.00 2.67
308 313 1.271325 TGGAACCTGATCACGCACATT 60.271 47.619 0.00 0.00 0.00 2.71
309 314 0.324614 TGGAACCTGATCACGCACAT 59.675 50.000 0.00 0.00 0.00 3.21
310 315 0.320683 CTGGAACCTGATCACGCACA 60.321 55.000 0.00 0.00 0.00 4.57
311 316 0.037326 TCTGGAACCTGATCACGCAC 60.037 55.000 0.00 0.00 0.00 5.34
312 317 0.684535 TTCTGGAACCTGATCACGCA 59.315 50.000 0.00 0.00 0.00 5.24
313 318 1.808411 TTTCTGGAACCTGATCACGC 58.192 50.000 0.00 0.00 0.00 5.34
314 319 3.138304 TGTTTTCTGGAACCTGATCACG 58.862 45.455 0.00 0.00 0.00 4.35
315 320 5.712152 ATTGTTTTCTGGAACCTGATCAC 57.288 39.130 0.00 3.11 0.00 3.06
316 321 6.947733 ACATATTGTTTTCTGGAACCTGATCA 59.052 34.615 0.00 0.00 0.00 2.92
317 322 7.121168 TGACATATTGTTTTCTGGAACCTGATC 59.879 37.037 1.56 0.00 0.00 2.92
318 323 6.947733 TGACATATTGTTTTCTGGAACCTGAT 59.052 34.615 1.56 0.00 0.00 2.90
319 324 6.206634 GTGACATATTGTTTTCTGGAACCTGA 59.793 38.462 0.00 0.00 0.00 3.86
320 325 6.381801 GTGACATATTGTTTTCTGGAACCTG 58.618 40.000 0.00 0.00 0.00 4.00
321 326 5.476945 GGTGACATATTGTTTTCTGGAACCT 59.523 40.000 0.00 0.00 0.00 3.50
322 327 5.476945 AGGTGACATATTGTTTTCTGGAACC 59.523 40.000 0.00 0.00 0.00 3.62
323 328 6.575162 AGGTGACATATTGTTTTCTGGAAC 57.425 37.500 0.00 0.00 0.00 3.62
324 329 6.657541 GGTAGGTGACATATTGTTTTCTGGAA 59.342 38.462 0.00 0.00 0.00 3.53
325 330 6.012858 AGGTAGGTGACATATTGTTTTCTGGA 60.013 38.462 0.00 0.00 0.00 3.86
326 331 6.180472 AGGTAGGTGACATATTGTTTTCTGG 58.820 40.000 0.00 0.00 0.00 3.86
327 332 7.687941 AAGGTAGGTGACATATTGTTTTCTG 57.312 36.000 0.00 0.00 0.00 3.02
328 333 7.309194 GCAAAGGTAGGTGACATATTGTTTTCT 60.309 37.037 0.00 0.00 0.00 2.52
347 352 1.413118 CAACCCAAGGAAGCAAAGGT 58.587 50.000 0.00 0.00 0.00 3.50
355 364 1.343478 TGGCTTTTCCAACCCAAGGAA 60.343 47.619 0.00 0.00 43.21 3.36
363 372 3.368739 CCAATGATCCTGGCTTTTCCAAC 60.369 47.826 0.00 0.00 46.01 3.77
369 378 0.712380 ACCCCAATGATCCTGGCTTT 59.288 50.000 5.57 0.00 32.10 3.51
373 382 0.336048 ACCAACCCCAATGATCCTGG 59.664 55.000 4.29 4.29 0.00 4.45
374 383 2.236489 AACCAACCCCAATGATCCTG 57.764 50.000 0.00 0.00 0.00 3.86
375 384 3.274281 AAAACCAACCCCAATGATCCT 57.726 42.857 0.00 0.00 0.00 3.24
376 385 3.582647 AGAAAAACCAACCCCAATGATCC 59.417 43.478 0.00 0.00 0.00 3.36
378 387 3.582647 GGAGAAAAACCAACCCCAATGAT 59.417 43.478 0.00 0.00 0.00 2.45
383 552 0.468400 CCGGAGAAAAACCAACCCCA 60.468 55.000 0.00 0.00 0.00 4.96
393 562 1.808411 GTGATGCTGACCGGAGAAAA 58.192 50.000 9.46 0.00 0.00 2.29
394 563 0.389817 CGTGATGCTGACCGGAGAAA 60.390 55.000 9.46 0.00 0.00 2.52
395 564 1.215382 CGTGATGCTGACCGGAGAA 59.785 57.895 9.46 0.00 0.00 2.87
398 567 3.770040 CCCGTGATGCTGACCGGA 61.770 66.667 9.46 0.00 43.01 5.14
408 577 1.376295 GGCGTTACCAACCCGTGAT 60.376 57.895 0.00 0.00 38.86 3.06
421 590 0.323629 TCGGAGGAAGAATTGGCGTT 59.676 50.000 0.00 0.00 0.00 4.84
468 637 4.160439 TCCTATATGGACGATGATGCTTCC 59.840 45.833 0.00 0.00 40.56 3.46
469 638 5.330455 TCCTATATGGACGATGATGCTTC 57.670 43.478 0.00 0.00 40.56 3.86
495 664 1.903877 CTAGACAGGCCCCAGTGGTG 61.904 65.000 8.74 1.86 36.04 4.17
499 669 2.041265 CCCTAGACAGGCCCCAGT 59.959 66.667 0.00 0.00 41.08 4.00
510 680 1.751927 GTCTCCGTTCGCCCCTAGA 60.752 63.158 0.00 0.00 0.00 2.43
536 706 2.128771 ATTTAGCAATCAGGCACGGT 57.871 45.000 0.00 0.00 35.83 4.83
552 723 2.492025 TGGGTGCCTCCAGATCTATTT 58.508 47.619 0.00 0.00 38.11 1.40
568 739 2.419011 TTTGGCCACTGCGTATGGGT 62.419 55.000 3.88 0.00 37.73 4.51
603 774 1.815003 GATGGAGTTGGCCTGAAACAG 59.185 52.381 3.32 0.00 0.00 3.16
760 932 2.895372 GTCCGCCGCGATCCAAAT 60.895 61.111 15.93 0.00 0.00 2.32
895 1070 2.624838 ACTTAAAGAAGGACGTCGACCA 59.375 45.455 15.97 0.00 36.95 4.02
931 1106 2.335369 GCAGTGTGGACGACGACT 59.665 61.111 0.00 0.00 0.00 4.18
1033 1214 0.539986 GCCGTTCCAGAACCCTATGA 59.460 55.000 4.99 0.00 38.03 2.15
1037 1221 1.073199 CTTGCCGTTCCAGAACCCT 59.927 57.895 4.99 0.00 38.03 4.34
1106 1297 1.977293 GCGGGCTCCTCCTTCTTCAT 61.977 60.000 0.00 0.00 34.39 2.57
1560 1788 3.796443 CGACGGAGAAGGCGACGA 61.796 66.667 0.00 0.00 0.00 4.20
2021 2297 2.254350 CGTCGCCGTCTTCACTGA 59.746 61.111 0.00 0.00 0.00 3.41
2373 2694 0.250124 TTCACCGCACGACCTCAAAT 60.250 50.000 0.00 0.00 0.00 2.32
2435 2756 3.198853 GCTGTCCTATCCTCTTGTCCTTT 59.801 47.826 0.00 0.00 0.00 3.11
2436 2757 2.769095 GCTGTCCTATCCTCTTGTCCTT 59.231 50.000 0.00 0.00 0.00 3.36
2437 2758 2.023501 AGCTGTCCTATCCTCTTGTCCT 60.024 50.000 0.00 0.00 0.00 3.85
2438 2759 2.102252 CAGCTGTCCTATCCTCTTGTCC 59.898 54.545 5.25 0.00 0.00 4.02
2501 2822 3.721035 ACGTAGGTTGTACCACTGAAAC 58.279 45.455 0.00 0.00 41.95 2.78
2502 2823 3.550639 CGACGTAGGTTGTACCACTGAAA 60.551 47.826 0.00 0.00 41.95 2.69
2503 2824 2.030893 CGACGTAGGTTGTACCACTGAA 60.031 50.000 0.00 0.00 41.95 3.02
2505 2826 1.401931 CCGACGTAGGTTGTACCACTG 60.402 57.143 6.53 0.00 41.95 3.66
2506 2827 0.883833 CCGACGTAGGTTGTACCACT 59.116 55.000 6.53 0.00 41.95 4.00
2507 2828 0.598065 ACCGACGTAGGTTGTACCAC 59.402 55.000 15.28 0.00 43.00 4.16
2508 2829 0.597568 CACCGACGTAGGTTGTACCA 59.402 55.000 18.52 0.00 43.00 3.25
2509 2830 0.733909 GCACCGACGTAGGTTGTACC 60.734 60.000 18.52 0.97 43.00 3.34
2519 2840 1.816863 ATCACTTCCTGCACCGACGT 61.817 55.000 0.00 0.00 0.00 4.34
2544 2865 6.047231 GCACGGGTGTTCTTCTAGTAATAAT 58.953 40.000 0.25 0.00 0.00 1.28
3043 3370 6.271857 AGGATGATATATGTTGGCTCTGTTCT 59.728 38.462 0.00 0.00 0.00 3.01
3459 3786 1.115930 TGCCGCCCTCTCTATCTTCC 61.116 60.000 0.00 0.00 0.00 3.46
3815 4145 1.361668 GAATCTGCACGTGGTCGCAT 61.362 55.000 18.88 0.00 41.18 4.73
3816 4146 2.027073 GAATCTGCACGTGGTCGCA 61.027 57.895 18.88 7.98 41.18 5.10
3817 4147 2.740714 GGAATCTGCACGTGGTCGC 61.741 63.158 18.88 2.69 41.18 5.19
3818 4148 0.740868 ATGGAATCTGCACGTGGTCG 60.741 55.000 18.88 0.00 43.34 4.79
3819 4149 2.309528 TATGGAATCTGCACGTGGTC 57.690 50.000 18.88 1.42 0.00 4.02
3820 4150 2.779755 TTATGGAATCTGCACGTGGT 57.220 45.000 18.88 0.00 0.00 4.16
3821 4151 5.749596 TTTATTATGGAATCTGCACGTGG 57.250 39.130 18.88 0.92 0.00 4.94
3822 4152 9.897744 ATTAATTTATTATGGAATCTGCACGTG 57.102 29.630 12.28 12.28 0.00 4.49
3847 4177 9.628500 GTAAAGAAATCCTGTTATGGACCTAAT 57.372 33.333 0.00 0.00 39.17 1.73
3848 4178 8.607713 TGTAAAGAAATCCTGTTATGGACCTAA 58.392 33.333 0.00 0.00 39.17 2.69
3849 4179 8.153221 TGTAAAGAAATCCTGTTATGGACCTA 57.847 34.615 0.00 0.00 39.17 3.08
3850 4180 7.027874 TGTAAAGAAATCCTGTTATGGACCT 57.972 36.000 0.00 0.00 39.17 3.85
3851 4181 7.696992 TTGTAAAGAAATCCTGTTATGGACC 57.303 36.000 0.00 0.00 39.17 4.46
3852 4182 7.702348 GCATTGTAAAGAAATCCTGTTATGGAC 59.298 37.037 0.00 0.00 39.17 4.02
3853 4183 7.415095 CGCATTGTAAAGAAATCCTGTTATGGA 60.415 37.037 0.00 0.00 40.82 3.41
3854 4184 6.692681 CGCATTGTAAAGAAATCCTGTTATGG 59.307 38.462 0.00 0.00 0.00 2.74
3855 4185 7.250569 ACGCATTGTAAAGAAATCCTGTTATG 58.749 34.615 0.00 0.00 0.00 1.90
3856 4186 7.391148 ACGCATTGTAAAGAAATCCTGTTAT 57.609 32.000 0.00 0.00 0.00 1.89
3857 4187 6.811253 ACGCATTGTAAAGAAATCCTGTTA 57.189 33.333 0.00 0.00 0.00 2.41
3858 4188 5.705609 ACGCATTGTAAAGAAATCCTGTT 57.294 34.783 0.00 0.00 0.00 3.16
3859 4189 5.705609 AACGCATTGTAAAGAAATCCTGT 57.294 34.783 0.00 0.00 0.00 4.00
3860 4190 7.526608 TCTTAACGCATTGTAAAGAAATCCTG 58.473 34.615 0.00 0.00 0.00 3.86
3861 4191 7.681939 TCTTAACGCATTGTAAAGAAATCCT 57.318 32.000 0.00 0.00 0.00 3.24
3862 4192 8.911247 AATCTTAACGCATTGTAAAGAAATCC 57.089 30.769 0.00 0.00 30.56 3.01
3865 4195 9.320406 CGTAAATCTTAACGCATTGTAAAGAAA 57.680 29.630 0.00 0.00 31.66 2.52
3866 4196 8.497554 ACGTAAATCTTAACGCATTGTAAAGAA 58.502 29.630 0.00 0.00 42.74 2.52
3867 4197 7.953173 CACGTAAATCTTAACGCATTGTAAAGA 59.047 33.333 0.00 0.00 42.74 2.52
3868 4198 7.742963 ACACGTAAATCTTAACGCATTGTAAAG 59.257 33.333 0.00 0.00 42.74 1.85
3869 4199 7.574496 ACACGTAAATCTTAACGCATTGTAAA 58.426 30.769 0.00 0.00 42.74 2.01
3870 4200 7.119605 ACACGTAAATCTTAACGCATTGTAA 57.880 32.000 0.00 0.00 42.74 2.41
3871 4201 6.709145 ACACGTAAATCTTAACGCATTGTA 57.291 33.333 0.00 0.00 42.74 2.41
3872 4202 5.600908 ACACGTAAATCTTAACGCATTGT 57.399 34.783 0.00 0.00 42.74 2.71
3873 4203 7.231607 ACTAACACGTAAATCTTAACGCATTG 58.768 34.615 0.00 0.00 42.74 2.82
3874 4204 7.355332 ACTAACACGTAAATCTTAACGCATT 57.645 32.000 0.00 0.00 42.74 3.56
3875 4205 6.956299 ACTAACACGTAAATCTTAACGCAT 57.044 33.333 0.00 0.00 42.74 4.73
3876 4206 6.768029 AACTAACACGTAAATCTTAACGCA 57.232 33.333 0.00 0.00 42.74 5.24
3877 4207 8.006027 AGAAAACTAACACGTAAATCTTAACGC 58.994 33.333 0.00 0.00 42.74 4.84
3878 4208 9.853921 AAGAAAACTAACACGTAAATCTTAACG 57.146 29.630 0.00 0.00 44.47 3.18
3902 4232 9.941664 CCTACATCAGTGCATTTCTTTATTAAG 57.058 33.333 0.00 0.00 0.00 1.85
3903 4233 8.902806 CCCTACATCAGTGCATTTCTTTATTAA 58.097 33.333 0.00 0.00 0.00 1.40
3904 4234 8.271458 TCCCTACATCAGTGCATTTCTTTATTA 58.729 33.333 0.00 0.00 0.00 0.98
3905 4235 7.118723 TCCCTACATCAGTGCATTTCTTTATT 58.881 34.615 0.00 0.00 0.00 1.40
3906 4236 6.662755 TCCCTACATCAGTGCATTTCTTTAT 58.337 36.000 0.00 0.00 0.00 1.40
3907 4237 6.061022 TCCCTACATCAGTGCATTTCTTTA 57.939 37.500 0.00 0.00 0.00 1.85
3908 4238 4.922206 TCCCTACATCAGTGCATTTCTTT 58.078 39.130 0.00 0.00 0.00 2.52
3909 4239 4.574674 TCCCTACATCAGTGCATTTCTT 57.425 40.909 0.00 0.00 0.00 2.52
3910 4240 4.712476 GATCCCTACATCAGTGCATTTCT 58.288 43.478 0.00 0.00 0.00 2.52
3911 4241 3.496130 CGATCCCTACATCAGTGCATTTC 59.504 47.826 0.00 0.00 0.00 2.17
3912 4242 3.134623 TCGATCCCTACATCAGTGCATTT 59.865 43.478 0.00 0.00 0.00 2.32
3913 4243 2.700371 TCGATCCCTACATCAGTGCATT 59.300 45.455 0.00 0.00 0.00 3.56
3914 4244 2.319844 TCGATCCCTACATCAGTGCAT 58.680 47.619 0.00 0.00 0.00 3.96
3915 4245 1.775385 TCGATCCCTACATCAGTGCA 58.225 50.000 0.00 0.00 0.00 4.57
3916 4246 3.062763 CAATCGATCCCTACATCAGTGC 58.937 50.000 0.00 0.00 0.00 4.40
3917 4247 4.590850 TCAATCGATCCCTACATCAGTG 57.409 45.455 0.00 0.00 0.00 3.66
3918 4248 5.788450 GAATCAATCGATCCCTACATCAGT 58.212 41.667 0.00 0.00 0.00 3.41
3933 4263 9.883142 ATCTATCTTTCCTTATCCGAATCAATC 57.117 33.333 0.00 0.00 0.00 2.67
3935 4265 9.712305 GAATCTATCTTTCCTTATCCGAATCAA 57.288 33.333 0.00 0.00 0.00 2.57
3936 4266 8.029522 CGAATCTATCTTTCCTTATCCGAATCA 58.970 37.037 0.00 0.00 0.00 2.57
3937 4267 8.030106 ACGAATCTATCTTTCCTTATCCGAATC 58.970 37.037 0.00 0.00 0.00 2.52
3938 4268 7.815068 CACGAATCTATCTTTCCTTATCCGAAT 59.185 37.037 0.00 0.00 0.00 3.34
3939 4269 7.013942 TCACGAATCTATCTTTCCTTATCCGAA 59.986 37.037 0.00 0.00 0.00 4.30
3940 4270 6.489022 TCACGAATCTATCTTTCCTTATCCGA 59.511 38.462 0.00 0.00 0.00 4.55
3941 4271 6.678878 TCACGAATCTATCTTTCCTTATCCG 58.321 40.000 0.00 0.00 0.00 4.18
3942 4272 8.527810 AGATCACGAATCTATCTTTCCTTATCC 58.472 37.037 0.00 0.00 43.17 2.59
3943 4273 9.921637 AAGATCACGAATCTATCTTTCCTTATC 57.078 33.333 0.00 0.00 44.26 1.75
3946 4276 8.887717 CAAAAGATCACGAATCTATCTTTCCTT 58.112 33.333 9.31 0.00 44.92 3.36
3947 4277 8.043710 ACAAAAGATCACGAATCTATCTTTCCT 58.956 33.333 9.31 0.00 44.92 3.36
3948 4278 8.202745 ACAAAAGATCACGAATCTATCTTTCC 57.797 34.615 9.31 0.00 44.92 3.13
3951 4281 9.823647 ACATACAAAAGATCACGAATCTATCTT 57.176 29.630 0.00 0.00 44.26 2.40
3952 4282 9.823647 AACATACAAAAGATCACGAATCTATCT 57.176 29.630 0.00 0.00 44.26 1.98
3955 4285 9.529325 CCTAACATACAAAAGATCACGAATCTA 57.471 33.333 0.00 0.00 44.26 1.98
3957 4287 8.420374 TCCTAACATACAAAAGATCACGAATC 57.580 34.615 0.00 0.00 34.30 2.52
3958 4288 8.786826 TTCCTAACATACAAAAGATCACGAAT 57.213 30.769 0.00 0.00 0.00 3.34
3959 4289 8.610248 TTTCCTAACATACAAAAGATCACGAA 57.390 30.769 0.00 0.00 0.00 3.85
3960 4290 8.786826 ATTTCCTAACATACAAAAGATCACGA 57.213 30.769 0.00 0.00 0.00 4.35
3966 4296 9.802039 ACCACTAATTTCCTAACATACAAAAGA 57.198 29.630 0.00 0.00 0.00 2.52
3970 4300 8.301002 GCAAACCACTAATTTCCTAACATACAA 58.699 33.333 0.00 0.00 0.00 2.41
3971 4301 7.448777 TGCAAACCACTAATTTCCTAACATACA 59.551 33.333 0.00 0.00 0.00 2.29
3972 4302 7.822658 TGCAAACCACTAATTTCCTAACATAC 58.177 34.615 0.00 0.00 0.00 2.39
3973 4303 8.410673 TTGCAAACCACTAATTTCCTAACATA 57.589 30.769 0.00 0.00 0.00 2.29
3974 4304 6.909550 TGCAAACCACTAATTTCCTAACAT 57.090 33.333 0.00 0.00 0.00 2.71
3975 4305 6.239176 CCTTGCAAACCACTAATTTCCTAACA 60.239 38.462 0.00 0.00 0.00 2.41
3976 4306 6.015772 TCCTTGCAAACCACTAATTTCCTAAC 60.016 38.462 0.00 0.00 0.00 2.34
3977 4307 6.071984 TCCTTGCAAACCACTAATTTCCTAA 58.928 36.000 0.00 0.00 0.00 2.69
3978 4308 5.636123 TCCTTGCAAACCACTAATTTCCTA 58.364 37.500 0.00 0.00 0.00 2.94
3979 4309 4.479158 TCCTTGCAAACCACTAATTTCCT 58.521 39.130 0.00 0.00 0.00 3.36
3980 4310 4.864704 TCCTTGCAAACCACTAATTTCC 57.135 40.909 0.00 0.00 0.00 3.13
3981 4311 6.512297 TCTTTCCTTGCAAACCACTAATTTC 58.488 36.000 0.00 0.00 0.00 2.17
3982 4312 6.098266 ACTCTTTCCTTGCAAACCACTAATTT 59.902 34.615 0.00 0.00 0.00 1.82
3983 4313 5.598417 ACTCTTTCCTTGCAAACCACTAATT 59.402 36.000 0.00 0.00 0.00 1.40
3984 4314 5.010012 CACTCTTTCCTTGCAAACCACTAAT 59.990 40.000 0.00 0.00 0.00 1.73
3985 4315 4.338118 CACTCTTTCCTTGCAAACCACTAA 59.662 41.667 0.00 0.00 0.00 2.24
3986 4316 3.882888 CACTCTTTCCTTGCAAACCACTA 59.117 43.478 0.00 0.00 0.00 2.74
3987 4317 2.689983 CACTCTTTCCTTGCAAACCACT 59.310 45.455 0.00 0.00 0.00 4.00
3988 4318 2.223805 CCACTCTTTCCTTGCAAACCAC 60.224 50.000 0.00 0.00 0.00 4.16
3989 4319 2.031120 CCACTCTTTCCTTGCAAACCA 58.969 47.619 0.00 0.00 0.00 3.67
3990 4320 2.294512 CTCCACTCTTTCCTTGCAAACC 59.705 50.000 0.00 0.00 0.00 3.27
3991 4321 3.214328 TCTCCACTCTTTCCTTGCAAAC 58.786 45.455 0.00 0.00 0.00 2.93
3992 4322 3.576078 TCTCCACTCTTTCCTTGCAAA 57.424 42.857 0.00 0.00 0.00 3.68
3993 4323 3.576078 TTCTCCACTCTTTCCTTGCAA 57.424 42.857 0.00 0.00 0.00 4.08
3994 4324 3.576078 TTTCTCCACTCTTTCCTTGCA 57.424 42.857 0.00 0.00 0.00 4.08
3995 4325 4.918810 TTTTTCTCCACTCTTTCCTTGC 57.081 40.909 0.00 0.00 0.00 4.01
4014 4344 2.542824 CGTGGTCGCATTGGTTCTTTTT 60.543 45.455 0.00 0.00 0.00 1.94
4015 4345 1.001815 CGTGGTCGCATTGGTTCTTTT 60.002 47.619 0.00 0.00 0.00 2.27
4016 4346 0.591170 CGTGGTCGCATTGGTTCTTT 59.409 50.000 0.00 0.00 0.00 2.52
4017 4347 0.534203 ACGTGGTCGCATTGGTTCTT 60.534 50.000 0.00 0.00 41.18 2.52
4018 4348 0.319083 TACGTGGTCGCATTGGTTCT 59.681 50.000 0.00 0.00 41.18 3.01
4019 4349 1.365699 ATACGTGGTCGCATTGGTTC 58.634 50.000 0.00 0.00 41.18 3.62
4020 4350 2.166870 TCTATACGTGGTCGCATTGGTT 59.833 45.455 0.00 0.00 41.18 3.67
4021 4351 1.752498 TCTATACGTGGTCGCATTGGT 59.248 47.619 0.00 0.00 41.18 3.67
4022 4352 2.502213 TCTATACGTGGTCGCATTGG 57.498 50.000 0.00 0.00 41.18 3.16
4023 4353 3.428870 GGAATCTATACGTGGTCGCATTG 59.571 47.826 0.00 0.00 41.18 2.82
4024 4354 3.069016 TGGAATCTATACGTGGTCGCATT 59.931 43.478 0.00 0.00 41.18 3.56
4411 5371 4.077822 CTCTCCACTCTTTCCTTGCAAAT 58.922 43.478 0.00 0.00 0.00 2.32
4719 5686 7.155328 GTCATCAATCGTATCCATTTCTACCT 58.845 38.462 0.00 0.00 0.00 3.08
4844 5811 6.439375 TGTTTGGTAGCAGAGATTAGGAAGTA 59.561 38.462 0.00 0.00 0.00 2.24
4845 5812 5.248477 TGTTTGGTAGCAGAGATTAGGAAGT 59.752 40.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.