Multiple sequence alignment - TraesCS6A01G305100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G305100 chr6A 100.000 4537 0 0 1 4537 538029267 538033803 0.000000e+00 8379.0
1 TraesCS6A01G305100 chr6D 95.785 3891 116 24 17 3880 391890735 391894604 0.000000e+00 6233.0
2 TraesCS6A01G305100 chr6B 95.368 2353 74 18 1645 3974 585498163 585500503 0.000000e+00 3709.0
3 TraesCS6A01G305100 chr6B 94.575 1401 37 11 218 1612 585496797 585498164 0.000000e+00 2130.0
4 TraesCS6A01G305100 chr7A 95.131 534 25 1 4004 4537 658780217 658780749 0.000000e+00 841.0
5 TraesCS6A01G305100 chr7A 92.225 373 16 5 4165 4537 576152317 576151958 2.420000e-142 516.0
6 TraesCS6A01G305100 chr7A 89.474 380 27 2 4158 4537 658805254 658805620 6.870000e-128 468.0
7 TraesCS6A01G305100 chr7A 94.332 247 13 1 4004 4250 658791119 658791364 1.190000e-100 377.0
8 TraesCS6A01G305100 chr7A 90.789 228 8 1 4310 4537 112268504 112268290 4.440000e-75 292.0
9 TraesCS6A01G305100 chr7A 85.892 241 17 4 4301 4537 658791359 658791586 1.630000e-59 241.0
10 TraesCS6A01G305100 chr1A 96.610 354 12 0 4003 4356 498539506 498539153 5.060000e-164 588.0
11 TraesCS6A01G305100 chr5D 86.441 531 29 12 4008 4537 298769603 298769115 3.990000e-150 542.0
12 TraesCS6A01G305100 chr7B 85.472 530 36 9 4009 4537 546380342 546379853 8.700000e-142 514.0
13 TraesCS6A01G305100 chr7B 83.484 442 23 25 4008 4448 548473135 548473527 2.580000e-97 366.0
14 TraesCS6A01G305100 chr7B 92.342 222 16 1 4008 4228 583625953 583625732 9.470000e-82 315.0
15 TraesCS6A01G305100 chr7B 92.683 164 12 0 4296 4459 583625303 583625140 2.110000e-58 237.0
16 TraesCS6A01G305100 chr3D 93.510 339 21 1 4004 4341 162873711 162874049 1.880000e-138 503.0
17 TraesCS6A01G305100 chr4D 82.674 531 58 10 4007 4537 29383398 29382902 1.500000e-119 440.0
18 TraesCS6A01G305100 chr2A 95.367 259 7 2 4003 4257 104328094 104327837 1.520000e-109 407.0
19 TraesCS6A01G305100 chr2A 95.436 241 11 0 4297 4537 104327435 104327195 7.120000e-103 385.0
20 TraesCS6A01G305100 chr2B 88.737 293 31 2 4008 4300 31474476 31474186 1.550000e-94 357.0
21 TraesCS6A01G305100 chr2D 88.327 257 26 3 4008 4262 2609116 2608862 5.700000e-79 305.0
22 TraesCS6A01G305100 chr2D 86.310 168 8 3 4372 4537 71581778 71581932 7.810000e-38 169.0
23 TraesCS6A01G305100 chr3A 94.359 195 11 0 4282 4476 498254300 498254494 2.650000e-77 300.0
24 TraesCS6A01G305100 chr5B 85.204 196 7 9 4253 4448 582155032 582155205 1.000000e-41 182.0
25 TraesCS6A01G305100 chr7D 93.023 43 3 0 4495 4537 32169604 32169646 3.790000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G305100 chr6A 538029267 538033803 4536 False 8379.0 8379 100.0000 1 4537 1 chr6A.!!$F1 4536
1 TraesCS6A01G305100 chr6D 391890735 391894604 3869 False 6233.0 6233 95.7850 17 3880 1 chr6D.!!$F1 3863
2 TraesCS6A01G305100 chr6B 585496797 585500503 3706 False 2919.5 3709 94.9715 218 3974 2 chr6B.!!$F1 3756
3 TraesCS6A01G305100 chr7A 658780217 658780749 532 False 841.0 841 95.1310 4004 4537 1 chr7A.!!$F1 533
4 TraesCS6A01G305100 chr7B 583625140 583625953 813 True 276.0 315 92.5125 4008 4459 2 chr7B.!!$R2 451
5 TraesCS6A01G305100 chr2A 104327195 104328094 899 True 396.0 407 95.4015 4003 4537 2 chr2A.!!$R1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 1.066358 GTTAGAGGTTGGGGAAGACGG 60.066 57.143 0.0 0.0 0.00 4.79 F
470 475 1.531149 CAGAACTAGGTTGGTGTTGCG 59.469 52.381 0.0 0.0 0.00 4.85 F
1086 1096 1.824852 TGCATGTACTCATCAGACGGT 59.175 47.619 0.0 0.0 31.15 4.83 F
2852 2870 0.318441 CTTCTCCTGAGCCGAACACA 59.682 55.000 0.0 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1086 1096 2.832838 TCAGGAGTCCTATGAGGCAAA 58.167 47.619 12.53 0.0 34.61 3.68 R
1970 1982 2.890945 AGGGCATGTGTTTACCAAGTTC 59.109 45.455 0.00 0.0 0.00 3.01 R
2960 2978 1.602377 CTCGTTGAACTTGTTGGGGAC 59.398 52.381 0.00 0.0 0.00 4.46 R
3974 4018 0.389817 CGAGAGAAACCACCGATGCA 60.390 55.000 0.00 0.0 0.00 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 2.707257 TCCTGTTTAAAAGTCCGAGGGT 59.293 45.455 0.00 0.00 0.00 4.34
111 112 3.528370 TCGGCTAGGCGGAGAAGC 61.528 66.667 34.63 0.00 33.15 3.86
168 169 5.141182 TGAGCAGGAGGTATTAGGTTAGAG 58.859 45.833 0.00 0.00 0.00 2.43
182 183 1.066358 GTTAGAGGTTGGGGAAGACGG 60.066 57.143 0.00 0.00 0.00 4.79
375 380 6.425577 TTCAAGTATACGTATTTTGGTGCC 57.574 37.500 22.07 3.07 0.00 5.01
451 456 3.249189 AGTCTGCCCCCGCTTTCA 61.249 61.111 0.00 0.00 35.36 2.69
470 475 1.531149 CAGAACTAGGTTGGTGTTGCG 59.469 52.381 0.00 0.00 0.00 4.85
638 644 7.790861 ACTTTACTACGCATAAAATGTTTGC 57.209 32.000 0.00 0.00 0.00 3.68
710 719 8.561738 TTGATGAGGTCCTTGTTATTTAAGTC 57.438 34.615 0.00 0.00 0.00 3.01
879 889 3.062099 TGCGAGTAAGCTTTATTTGCGAG 59.938 43.478 3.20 0.00 38.13 5.03
1050 1060 2.151502 ATTCGAGCTTCTCTCCTCCA 57.848 50.000 0.00 0.00 38.62 3.86
1086 1096 1.824852 TGCATGTACTCATCAGACGGT 59.175 47.619 0.00 0.00 31.15 4.83
1367 1379 3.620427 TTACATACCGTGGATGCTGTT 57.380 42.857 0.00 0.00 0.00 3.16
1379 1391 2.738314 GGATGCTGTTTTGCCATGTTTC 59.262 45.455 0.00 0.00 0.00 2.78
1397 1409 9.236691 CCATGTTTCTATTTGTGTAATATGCAC 57.763 33.333 0.00 4.30 37.37 4.57
1424 1436 8.311395 TCTCTTCACAGTATAATGAATGGAGT 57.689 34.615 7.27 0.00 34.43 3.85
1464 1476 5.009610 TGAACATGATAGTAGCTGCATCGTA 59.990 40.000 4.12 0.00 0.00 3.43
1542 1554 7.648142 AGTACGAAAGAAATTTGCTGAATTGA 58.352 30.769 0.00 0.00 37.98 2.57
1704 1716 2.977772 AGATCCTGCTACACTCTTGC 57.022 50.000 0.00 0.00 0.00 4.01
1745 1757 5.523438 ACGTTTTTGTGGGATATTGTGTT 57.477 34.783 0.00 0.00 0.00 3.32
1803 1815 8.366671 ACAGTACAAAGTCTTCTGTATCAAAC 57.633 34.615 3.46 0.00 37.55 2.93
1842 1854 8.668510 ATTATGTCTGGTTTGTCTAGCATAAG 57.331 34.615 0.00 0.00 37.23 1.73
1844 1856 5.479306 TGTCTGGTTTGTCTAGCATAAGTC 58.521 41.667 0.00 0.00 0.00 3.01
2295 2308 6.874134 ACTATAGTGCTAGTGTTCCTTTGTTG 59.126 38.462 4.10 0.00 30.77 3.33
2377 2390 0.602372 GATCTCCAATCCAGCGAGGC 60.602 60.000 0.00 0.00 37.29 4.70
2395 2408 5.170748 CGAGGCAAGCTCCATTTTATTTTT 58.829 37.500 0.00 0.00 0.00 1.94
2396 2409 6.329496 CGAGGCAAGCTCCATTTTATTTTTA 58.671 36.000 0.00 0.00 0.00 1.52
2852 2870 0.318441 CTTCTCCTGAGCCGAACACA 59.682 55.000 0.00 0.00 0.00 3.72
2960 2978 2.205022 TCAGCATTGACTCCCAAAGG 57.795 50.000 0.00 0.00 38.43 3.11
3489 3507 1.078347 GGGGGCCAAAAGGATGACA 59.922 57.895 4.39 0.00 0.00 3.58
3490 3508 0.972471 GGGGGCCAAAAGGATGACAG 60.972 60.000 4.39 0.00 0.00 3.51
3491 3509 0.251787 GGGGCCAAAAGGATGACAGT 60.252 55.000 4.39 0.00 0.00 3.55
3573 3595 0.859232 CGCGCCTTATATTGTTCGCT 59.141 50.000 0.00 0.00 40.32 4.93
3633 3655 9.140286 CGTAGTAGATGTATCCATAAATTGTGG 57.860 37.037 2.04 2.04 38.11 4.17
3691 3717 4.439016 GGACGGAGCTGTTTGTTTTGTTTA 60.439 41.667 0.00 0.00 0.00 2.01
3756 3787 4.011966 ACTGTGCTTTCATCATGACTCA 57.988 40.909 0.00 0.00 0.00 3.41
3783 3815 2.611518 CGCCTGTTGTTTTGTTTGGAA 58.388 42.857 0.00 0.00 0.00 3.53
3793 3825 7.116948 TGTTGTTTTGTTTGGAACATGTTACTG 59.883 33.333 21.32 0.00 41.79 2.74
3828 3863 1.217183 AGGTCCGGCTCTGGAGTATTA 59.783 52.381 0.00 0.00 39.14 0.98
3833 3868 2.431057 CCGGCTCTGGAGTATTAACAGT 59.569 50.000 0.00 0.00 34.02 3.55
3892 3933 1.161843 CCGTGGGTGTCCATGTTTAC 58.838 55.000 4.23 0.00 46.20 2.01
3898 3942 2.490168 GGGTGTCCATGTTTACCTGGTT 60.490 50.000 3.84 0.00 33.94 3.67
3914 3958 2.756207 CTGGTTCACATGCATTCCATCA 59.244 45.455 0.00 0.00 29.71 3.07
3922 3966 3.695556 ACATGCATTCCATCATTGAACGA 59.304 39.130 0.00 0.00 29.71 3.85
3949 3993 0.530431 CTTTGTGGCAAGTTGGTGGC 60.530 55.000 4.75 0.00 44.09 5.01
3958 4002 1.112315 AAGTTGGTGGCGGCATCAAA 61.112 50.000 35.60 19.11 0.00 2.69
3961 4005 0.683973 TTGGTGGCGGCATCAAATTT 59.316 45.000 32.66 0.00 0.00 1.82
3964 4008 1.607767 GGTGGCGGCATCAAATTTTGT 60.608 47.619 18.62 0.00 0.00 2.83
3965 4009 2.353208 GGTGGCGGCATCAAATTTTGTA 60.353 45.455 18.62 0.00 0.00 2.41
3969 4013 2.923020 GCGGCATCAAATTTTGTAGTGG 59.077 45.455 8.89 0.00 0.00 4.00
3974 4018 6.223120 GGCATCAAATTTTGTAGTGGAAACT 58.777 36.000 8.89 0.00 0.00 2.66
3975 4019 6.146021 GGCATCAAATTTTGTAGTGGAAACTG 59.854 38.462 8.89 0.00 0.00 3.16
3976 4020 6.346838 GCATCAAATTTTGTAGTGGAAACTGC 60.347 38.462 8.89 0.00 0.00 4.40
3977 4021 6.214191 TCAAATTTTGTAGTGGAAACTGCA 57.786 33.333 8.89 0.00 0.00 4.41
3978 4022 6.815089 TCAAATTTTGTAGTGGAAACTGCAT 58.185 32.000 8.89 0.00 32.67 3.96
3979 4023 6.922957 TCAAATTTTGTAGTGGAAACTGCATC 59.077 34.615 8.89 0.00 32.67 3.91
3980 4024 4.481930 TTTTGTAGTGGAAACTGCATCG 57.518 40.909 0.00 0.00 32.67 3.84
3981 4025 2.093306 TGTAGTGGAAACTGCATCGG 57.907 50.000 0.00 0.00 0.00 4.18
3982 4026 1.346395 TGTAGTGGAAACTGCATCGGT 59.654 47.619 0.00 0.00 0.00 4.69
3983 4027 1.732259 GTAGTGGAAACTGCATCGGTG 59.268 52.381 0.00 0.00 0.00 4.94
3984 4028 0.606401 AGTGGAAACTGCATCGGTGG 60.606 55.000 0.00 0.00 0.00 4.61
3985 4029 0.889186 GTGGAAACTGCATCGGTGGT 60.889 55.000 0.00 0.00 0.00 4.16
3986 4030 0.179004 TGGAAACTGCATCGGTGGTT 60.179 50.000 0.00 0.00 0.00 3.67
3987 4031 0.958822 GGAAACTGCATCGGTGGTTT 59.041 50.000 0.00 0.00 35.06 3.27
3988 4032 1.068541 GGAAACTGCATCGGTGGTTTC 60.069 52.381 17.33 17.33 43.63 2.78
3989 4033 1.880027 GAAACTGCATCGGTGGTTTCT 59.120 47.619 17.96 0.00 42.13 2.52
3990 4034 1.523758 AACTGCATCGGTGGTTTCTC 58.476 50.000 0.00 0.00 0.00 2.87
3991 4035 0.687354 ACTGCATCGGTGGTTTCTCT 59.313 50.000 0.00 0.00 0.00 3.10
3992 4036 1.338200 ACTGCATCGGTGGTTTCTCTC 60.338 52.381 0.00 0.00 0.00 3.20
3993 4037 0.389817 TGCATCGGTGGTTTCTCTCG 60.390 55.000 0.00 0.00 0.00 4.04
3994 4038 0.389948 GCATCGGTGGTTTCTCTCGT 60.390 55.000 0.00 0.00 0.00 4.18
3995 4039 1.135199 GCATCGGTGGTTTCTCTCGTA 60.135 52.381 0.00 0.00 0.00 3.43
3996 4040 2.481449 GCATCGGTGGTTTCTCTCGTAT 60.481 50.000 0.00 0.00 0.00 3.06
3997 4041 3.782046 CATCGGTGGTTTCTCTCGTATT 58.218 45.455 0.00 0.00 0.00 1.89
3998 4042 3.498927 TCGGTGGTTTCTCTCGTATTC 57.501 47.619 0.00 0.00 0.00 1.75
3999 4043 3.087031 TCGGTGGTTTCTCTCGTATTCT 58.913 45.455 0.00 0.00 0.00 2.40
4000 4044 4.264253 TCGGTGGTTTCTCTCGTATTCTA 58.736 43.478 0.00 0.00 0.00 2.10
4001 4045 4.885907 TCGGTGGTTTCTCTCGTATTCTAT 59.114 41.667 0.00 0.00 0.00 1.98
4012 4056 1.971357 CGTATTCTATGCCTGACCCCT 59.029 52.381 0.00 0.00 0.00 4.79
4083 4132 4.825679 CCTCCTCCCTCCACCCCC 62.826 77.778 0.00 0.00 0.00 5.40
4111 4160 3.764466 CCGCCTGAGGAGTTCGCT 61.764 66.667 0.65 0.00 0.00 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 3.528370 GCTTCTCCGCCTAGCCGA 61.528 66.667 0.00 0.00 0.00 5.54
168 169 1.077716 CCATCCGTCTTCCCCAACC 60.078 63.158 0.00 0.00 0.00 3.77
235 237 1.299926 CCTACGGGCTATGCGACAC 60.300 63.158 0.00 0.00 0.00 3.67
375 380 3.100671 AGAGGCTAGTTCAGGGTAACAG 58.899 50.000 0.00 0.00 39.74 3.16
451 456 1.878953 CGCAACACCAACCTAGTTCT 58.121 50.000 0.00 0.00 0.00 3.01
563 568 7.860373 TCTTTCTTTTGTAATGTTCCAATGACG 59.140 33.333 0.00 0.00 0.00 4.35
666 672 2.169832 AACCCACAACATGTCTCTCG 57.830 50.000 0.00 0.00 0.00 4.04
710 719 8.777865 TTATCTTGATCTACAAAAGGTCACTG 57.222 34.615 0.00 0.00 45.25 3.66
879 889 9.010366 GTGCAAATACTACTAGCTTATTTTTGC 57.990 33.333 16.43 16.43 43.93 3.68
975 985 2.168106 ACAGTCTCTGCTAGCAGGATTG 59.832 50.000 37.60 34.62 43.75 2.67
1050 1060 3.550431 CAGTCCCATCCCCGCGAT 61.550 66.667 8.23 0.00 0.00 4.58
1086 1096 2.832838 TCAGGAGTCCTATGAGGCAAA 58.167 47.619 12.53 0.00 34.61 3.68
1397 1409 9.205719 CTCCATTCATTATACTGTGAAGAGATG 57.794 37.037 0.00 0.00 37.72 2.90
1441 1453 4.302455 ACGATGCAGCTACTATCATGTTC 58.698 43.478 0.00 0.00 0.00 3.18
1454 1466 2.916716 CCAAATGTGTTTACGATGCAGC 59.083 45.455 0.00 0.00 0.00 5.25
1464 1476 3.806380 TGCAATGCTTCCAAATGTGTTT 58.194 36.364 6.82 0.00 0.00 2.83
1542 1554 3.500343 ACTATTTGCAAGGAAAGCCAGT 58.500 40.909 0.00 0.00 36.29 4.00
1680 1692 5.240891 CAAGAGTGTAGCAGGATCTTTTCA 58.759 41.667 0.00 0.00 0.00 2.69
1704 1716 4.377897 ACGTTAAGAACTTGGGAAGACAG 58.622 43.478 0.00 0.00 0.00 3.51
1745 1757 3.704800 TCCATGTATGAACGGGACAAA 57.295 42.857 0.00 0.00 29.49 2.83
1803 1815 7.201145 ACCAGACATAATACTTACTTAGCACG 58.799 38.462 0.00 0.00 0.00 5.34
1842 1854 4.389374 TGGGTTCAGATCTTGTTGAAGAC 58.611 43.478 0.00 0.00 41.12 3.01
1844 1856 5.532406 TCTTTGGGTTCAGATCTTGTTGAAG 59.468 40.000 0.00 0.00 34.25 3.02
1970 1982 2.890945 AGGGCATGTGTTTACCAAGTTC 59.109 45.455 0.00 0.00 0.00 3.01
2159 2172 5.626142 TGATGCCCATGTATACGGTTATTT 58.374 37.500 0.00 0.00 0.00 1.40
2161 2174 4.832248 CTGATGCCCATGTATACGGTTAT 58.168 43.478 0.00 0.00 0.00 1.89
2295 2308 7.611770 AGAAATGGTTAATTAAACAGGAAGCC 58.388 34.615 20.03 6.24 40.08 4.35
2395 2408 9.155785 CAGAGAACTAGGGGGATTAAGTAAATA 57.844 37.037 0.00 0.00 0.00 1.40
2396 2409 7.628101 ACAGAGAACTAGGGGGATTAAGTAAAT 59.372 37.037 0.00 0.00 0.00 1.40
2852 2870 3.310954 TGAATCCTTCCCTCCTAGAGCTT 60.311 47.826 0.00 0.00 0.00 3.74
2960 2978 1.602377 CTCGTTGAACTTGTTGGGGAC 59.398 52.381 0.00 0.00 0.00 4.46
3224 3242 2.027314 CTGCGAGCGGATCTGAGG 59.973 66.667 5.48 0.00 0.00 3.86
3573 3595 1.636148 ACAAGGGTAGAGTAACGGCA 58.364 50.000 0.00 0.00 0.00 5.69
3628 3650 2.192861 CCGGCACTGCTTTCCACAA 61.193 57.895 0.00 0.00 0.00 3.33
3633 3655 4.389576 CGCACCGGCACTGCTTTC 62.390 66.667 13.06 0.00 41.24 2.62
3691 3717 4.335647 CCAAGGCAGGCACCGTCT 62.336 66.667 0.00 0.00 33.69 4.18
3756 3787 0.534873 AAAACAACAGGCGGCAAACT 59.465 45.000 13.08 0.00 0.00 2.66
3783 3815 5.335348 GCCGGTTTTCAATACAGTAACATGT 60.335 40.000 1.90 0.00 37.19 3.21
3793 3825 1.471287 GGACCTGCCGGTTTTCAATAC 59.529 52.381 1.90 0.00 45.73 1.89
3828 3863 2.860062 CGATAACCGTTCTCGACTGTT 58.140 47.619 12.37 0.00 38.86 3.16
3855 3890 2.028930 ACGGGAAACAAAGCACAACAAA 60.029 40.909 0.00 0.00 0.00 2.83
3892 3933 1.548081 TGGAATGCATGTGAACCAGG 58.452 50.000 0.00 0.00 0.00 4.45
3898 3942 4.439016 CGTTCAATGATGGAATGCATGTGA 60.439 41.667 0.00 0.00 0.00 3.58
3914 3958 6.092748 GCCACAAAGATGTAAATCGTTCAAT 58.907 36.000 0.00 0.00 37.82 2.57
3922 3966 5.070313 ACCAACTTGCCACAAAGATGTAAAT 59.930 36.000 0.00 0.00 37.82 1.40
3949 3993 4.433186 TCCACTACAAAATTTGATGCCG 57.567 40.909 13.19 0.00 0.00 5.69
3958 4002 4.082787 CCGATGCAGTTTCCACTACAAAAT 60.083 41.667 0.00 0.00 29.64 1.82
3961 4005 2.224426 ACCGATGCAGTTTCCACTACAA 60.224 45.455 0.00 0.00 29.64 2.41
3964 4008 1.338674 CCACCGATGCAGTTTCCACTA 60.339 52.381 0.00 0.00 0.00 2.74
3965 4009 0.606401 CCACCGATGCAGTTTCCACT 60.606 55.000 0.00 0.00 0.00 4.00
3969 4013 1.880027 AGAAACCACCGATGCAGTTTC 59.120 47.619 15.47 15.47 45.33 2.78
3974 4018 0.389817 CGAGAGAAACCACCGATGCA 60.390 55.000 0.00 0.00 0.00 3.96
3975 4019 0.389948 ACGAGAGAAACCACCGATGC 60.390 55.000 0.00 0.00 0.00 3.91
3976 4020 2.933495 TACGAGAGAAACCACCGATG 57.067 50.000 0.00 0.00 0.00 3.84
3977 4021 3.700038 AGAATACGAGAGAAACCACCGAT 59.300 43.478 0.00 0.00 0.00 4.18
3978 4022 3.087031 AGAATACGAGAGAAACCACCGA 58.913 45.455 0.00 0.00 0.00 4.69
3979 4023 3.505464 AGAATACGAGAGAAACCACCG 57.495 47.619 0.00 0.00 0.00 4.94
3980 4024 4.745620 GCATAGAATACGAGAGAAACCACC 59.254 45.833 0.00 0.00 0.00 4.61
3981 4025 4.745620 GGCATAGAATACGAGAGAAACCAC 59.254 45.833 0.00 0.00 0.00 4.16
3982 4026 4.649674 AGGCATAGAATACGAGAGAAACCA 59.350 41.667 0.00 0.00 0.00 3.67
3983 4027 4.985409 CAGGCATAGAATACGAGAGAAACC 59.015 45.833 0.00 0.00 0.00 3.27
3984 4028 5.688176 GTCAGGCATAGAATACGAGAGAAAC 59.312 44.000 0.00 0.00 0.00 2.78
3985 4029 5.221263 GGTCAGGCATAGAATACGAGAGAAA 60.221 44.000 0.00 0.00 0.00 2.52
3986 4030 4.278669 GGTCAGGCATAGAATACGAGAGAA 59.721 45.833 0.00 0.00 0.00 2.87
3987 4031 3.821600 GGTCAGGCATAGAATACGAGAGA 59.178 47.826 0.00 0.00 0.00 3.10
3988 4032 3.057174 GGGTCAGGCATAGAATACGAGAG 60.057 52.174 0.00 0.00 0.00 3.20
3989 4033 2.891580 GGGTCAGGCATAGAATACGAGA 59.108 50.000 0.00 0.00 0.00 4.04
3990 4034 2.028930 GGGGTCAGGCATAGAATACGAG 60.029 54.545 0.00 0.00 0.00 4.18
3991 4035 1.968493 GGGGTCAGGCATAGAATACGA 59.032 52.381 0.00 0.00 0.00 3.43
3992 4036 1.971357 AGGGGTCAGGCATAGAATACG 59.029 52.381 0.00 0.00 0.00 3.06
3993 4037 2.551071 GCAGGGGTCAGGCATAGAATAC 60.551 54.545 0.00 0.00 0.00 1.89
3994 4038 1.699634 GCAGGGGTCAGGCATAGAATA 59.300 52.381 0.00 0.00 0.00 1.75
3995 4039 0.475906 GCAGGGGTCAGGCATAGAAT 59.524 55.000 0.00 0.00 0.00 2.40
3996 4040 1.915228 GCAGGGGTCAGGCATAGAA 59.085 57.895 0.00 0.00 0.00 2.10
3997 4041 2.434843 CGCAGGGGTCAGGCATAGA 61.435 63.158 0.00 0.00 0.00 1.98
3998 4042 2.109799 CGCAGGGGTCAGGCATAG 59.890 66.667 0.00 0.00 0.00 2.23
3999 4043 2.687200 ACGCAGGGGTCAGGCATA 60.687 61.111 0.00 0.00 0.00 3.14
4000 4044 4.101448 GACGCAGGGGTCAGGCAT 62.101 66.667 11.12 0.00 36.91 4.40
4467 4878 4.500116 GTCTGACGAGCCCGCCTC 62.500 72.222 0.00 0.00 39.95 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.