AutoCloner

Multiple sequence alignment - TraesCS6A01G304800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G304800	chr6A	100.000	3212	0	0	1	3212	537662995	537659784	0.000000e+00	5932.0
1	TraesCS6A01G304800	chr6A	87.112	419	33	5	2813	3210	537599720	537599302	3.780000e-124	455.0
2	TraesCS6A01G304800	chr6A	86.538	416	37	8	2813	3209	537606980	537606565	1.060000e-119	440.0
3	TraesCS6A01G304800	chr6A	88.112	143	17	0	1167	1309	15700855	15700997	1.530000e-38	171.0
4	TraesCS6A01G304800	chr6A	88.112	143	17	0	1167	1309	15906812	15906670	1.530000e-38	171.0
5	TraesCS6A01G304800	chr6A	81.013	158	16	5	2649	2805	537607285	537607141	2.620000e-21	113.0
6	TraesCS6A01G304800	chr6A	85.849	106	14	1	2651	2755	537600160	537600055	9.420000e-21	111.0
7	TraesCS6A01G304800	chr6A	97.368	38	1	0	2768	2805	537599916	537599879	7.440000e-07	65.8
8	TraesCS6A01G304800	chr6D	95.739	2253	80	9	339	2586	391538720	391536479	0.000000e+00	3615.0
9	TraesCS6A01G304800	chr6D	89.884	603	33	9	2587	3169	391536436	391535842	0.000000e+00	750.0
10	TraesCS6A01G304800	chr6D	91.111	360	19	6	1	349	391539210	391538853	2.900000e-130	475.0
11	TraesCS6A01G304800	chr6D	74.642	489	108	15	1165	1645	16775621	16775141	5.430000e-48	202.0
12	TraesCS6A01G304800	chr6B	93.781	1817	57	9	818	2586	584911763	584909955	0.000000e+00	2678.0
13	TraesCS6A01G304800	chr6B	93.264	386	17	5	2587	2965	584909912	584909529	7.780000e-156	560.0
14	TraesCS6A01G304800	chr6B	85.679	405	41	12	2813	3210	584684978	584684584	8.290000e-111	411.0
15	TraesCS6A01G304800	chr6B	90.458	262	10	1	2966	3212	584909485	584909224	6.640000e-87	331.0
16	TraesCS6A01G304800	chr6B	95.181	83	4	0	1	83	584985314	584985232	7.230000e-27	132.0
17	TraesCS6A01G304800	chr6B	83.065	124	19	2	2684	2805	584685245	584685122	9.420000e-21	111.0
18	TraesCS6A01G304800	chr2B	91.489	470	36	4	339	806	87744792	87744325	0.000000e+00	643.0
19	TraesCS6A01G304800	chr2B	74.538	487	107	12	1166	1645	54016540	54016064	2.530000e-46	196.0
20	TraesCS6A01G304800	chr2B	74.333	487	108	12	1166	1645	54043892	54043416	1.180000e-44	191.0
21	TraesCS6A01G304800	chr5A	90.698	473	39	4	339	807	501401864	501401393	2.720000e-175	625.0
22	TraesCS6A01G304800	chr5A	72.934	484	118	10	1167	1645	456099769	456099294	4.290000e-34	156.0
23	TraesCS6A01G304800	chr5A	83.019	106	10	4	251	354	31865399	31865498	4.410000e-14	89.8
24	TraesCS6A01G304800	chr5A	83.168	101	10	3	251	349	31593296	31593391	5.710000e-13	86.1
25	TraesCS6A01G304800	chr5A	83.168	101	10	3	251	349	31624280	31624375	5.710000e-13	86.1
26	TraesCS6A01G304800	chr5A	83.168	101	10	3	251	349	31742264	31742359	5.710000e-13	86.1
27	TraesCS6A01G304800	chr5A	83.168	101	10	3	251	349	31773174	31773269	5.710000e-13	86.1
28	TraesCS6A01G304800	chr5A	83.168	101	10	3	251	349	31831471	31831566	5.710000e-13	86.1
29	TraesCS6A01G304800	chr5A	83.168	101	10	3	251	349	31931557	31931652	5.710000e-13	86.1
30	TraesCS6A01G304800	chr5A	82.178	101	11	3	251	349	31689917	31690012	2.660000e-11	80.5
31	TraesCS6A01G304800	chr2D	91.910	445	32	3	339	781	7067859	7068301	1.270000e-173	619.0
32	TraesCS6A01G304800	chr5D	90.753	465	38	5	339	800	555194379	555194841	1.640000e-172	616.0
33	TraesCS6A01G304800	chr5D	80.412	194	38	0	1167	1360	356636933	356637126	7.180000e-32	148.0
34	TraesCS6A01G304800	chr1B	90.254	472	42	4	339	806	155432844	155433315	5.890000e-172	614.0
35	TraesCS6A01G304800	chr1B	88.584	473	49	5	339	806	458731297	458731769	1.290000e-158	569.0
36	TraesCS6A01G304800	chr4D	90.084	474	41	5	339	806	9199987	9200460	7.620000e-171	610.0
37	TraesCS6A01G304800	chr3D	90.929	452	37	3	339	788	605664234	605664683	3.540000e-169	604.0
38	TraesCS6A01G304800	chr5B	89.641	473	45	4	339	807	644574807	644575279	1.650000e-167	599.0
39	TraesCS6A01G304800	chr7B	96.552	58	1	1	285	341	695615887	695615830	9.490000e-16	95.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G304800	chr6A	537659784	537662995	3211	True	5932.000000	5932	100.000000	1	3212	1	chr6A.!!$R2	3211
1	TraesCS6A01G304800	chr6A	537606565	537607285	720	True	276.500000	440	83.775500	2649	3209	2	chr6A.!!$R4	560
2	TraesCS6A01G304800	chr6A	537599302	537600160	858	True	210.600000	455	90.109667	2651	3210	3	chr6A.!!$R3	559
3	TraesCS6A01G304800	chr6D	391535842	391539210	3368	True	1613.333333	3615	92.244667	1	3169	3	chr6D.!!$R2	3168
4	TraesCS6A01G304800	chr6B	584909224	584911763	2539	True	1189.666667	2678	92.501000	818	3212	3	chr6B.!!$R3	2394
5	TraesCS6A01G304800	chr6B	584684584	584685245	661	True	261.000000	411	84.372000	2684	3210	2	chr6B.!!$R2	526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
103	104	0.180171	TGCATGGTCCGGTTATCCTG	59.820	55.0	0.00	2.88	0.00	3.86	F
524	679	0.611714	ACTTTCCTTCGCATACCGGT	59.388	50.0	13.98	13.98	37.59	5.28	F
1701	1880	0.676151	AGTACGTCCAGGACTCCGTC	60.676	60.0	17.95	5.48	41.01	4.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1153	1332	1.004918	CGAAGCTGTTTCCCGGAGT	60.005	57.895	0.73	31.82	3.85	R
2177	2356	1.302033	CACTCAGCTTTCACCGGCT	60.302	57.895	0.00	39.60	5.52	R
2806	3196	1.153086	CCCAGGGATGCTCCGAAAG	60.153	63.158	0.00	37.43	2.62	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	0.690762	GTGGGGCTTAGGTGTTCTGA	59.309	55.000	0.00	0.00	0.00	3.27
79	80	3.880490	TGTGTTTTCTTTCGGTAGCATGT	59.120	39.130	0.00	0.00	0.00	3.21
103	104	0.180171	TGCATGGTCCGGTTATCCTG	59.820	55.000	0.00	2.88	0.00	3.86
104	105	1.166531	GCATGGTCCGGTTATCCTGC	61.167	60.000	0.00	8.41	0.00	4.85
183	184	3.758973	TTGTCGACAAAGCGGGGCA	62.759	57.895	27.94	2.29	32.11	5.36
205	206	5.105595	GCAAAAGCCTGGTTCAGAAATATCT	60.106	40.000	0.00	0.00	35.88	1.98
235	236	7.831691	TTTTTCATGGATACCACTCAAAGAA	57.168	32.000	0.00	0.00	35.80	2.52
245	246	8.793592	GGATACCACTCAAAGAAATTTGTTACT	58.206	33.333	0.37	0.00	33.82	2.24
256	257	6.389906	AGAAATTTGTTACTACTTGCATGGC	58.610	36.000	0.00	0.00	0.00	4.40
260	261	0.616371	TTACTACTTGCATGGCCGGT	59.384	50.000	1.90	0.00	0.00	5.28
294	304	2.440247	GTTTCGGGCCAGGGATGG	60.440	66.667	4.39	0.00	0.00	3.51
409	564	1.452145	GGCGGTGATGTTTGGTGTGT	61.452	55.000	0.00	0.00	0.00	3.72
415	570	1.247567	GATGTTTGGTGTGTGGGAGG	58.752	55.000	0.00	0.00	0.00	4.30
431	586	1.078426	AGGAATCCTTGCCGGTTCG	60.078	57.895	1.90	0.00	0.00	3.95
446	601	3.478724	TTCGTCCGATCCCGATGCG	62.479	63.158	0.00	0.00	38.22	4.73
503	658	2.064581	GTCGGTGGTAGCCATCCCT	61.065	63.158	0.00	0.00	35.28	4.20
513	668	1.376649	AGCCATCCCTCACTTTCCTT	58.623	50.000	0.00	0.00	0.00	3.36
524	679	0.611714	ACTTTCCTTCGCATACCGGT	59.388	50.000	13.98	13.98	37.59	5.28
525	680	1.287425	CTTTCCTTCGCATACCGGTC	58.713	55.000	12.40	0.00	37.59	4.79
554	709	2.597805	ACTCGTCCGGACAGCAGT	60.598	61.111	32.80	25.80	0.00	4.40
563	718	3.543548	GACAGCAGTGTCGTCAGC	58.456	61.111	8.63	0.00	43.75	4.26
604	759	4.308458	TGCTTGGTACGCGGCACT	62.308	61.111	12.47	0.00	0.00	4.40
605	760	3.047877	GCTTGGTACGCGGCACTT	61.048	61.111	12.47	0.00	0.00	3.16
629	784	3.596066	CTCGAGCTGTGGTGGGGTG	62.596	68.421	0.00	0.00	0.00	4.61
675	830	3.354499	CTTCCGCGCTTTGTCGAGC	62.354	63.158	5.56	0.00	39.29	5.03
680	835	3.043713	CGCTTTGTCGAGCTGCCA	61.044	61.111	0.00	0.00	40.52	4.92
700	855	5.347012	CCATTGTTGGCATTTGTTTCTTC	57.653	39.130	0.00	0.00	35.85	2.87
703	858	6.293027	CCATTGTTGGCATTTGTTTCTTCTTC	60.293	38.462	0.00	0.00	35.85	2.87
736	894	2.467826	GCTTGATGTCTGCTCGCCC	61.468	63.158	0.00	0.00	0.00	6.13
760	918	2.595095	CGTCGCGATGTGTACAATGTTA	59.405	45.455	20.17	0.00	0.00	2.41
761	919	3.300944	CGTCGCGATGTGTACAATGTTAG	60.301	47.826	20.17	0.00	0.00	2.34
769	927	6.073494	CGATGTGTACAATGTTAGTTGGTTGA	60.073	38.462	0.00	0.00	33.40	3.18
774	932	7.381139	GTGTACAATGTTAGTTGGTTGATTTGG	59.619	37.037	0.00	0.00	33.40	3.28
792	950	3.094484	TGGAATACAAAGCGGGGAAAT	57.906	42.857	0.00	0.00	0.00	2.17
882	1040	8.616076	GGTCCAGATACAGAAAATTAGTCAATG	58.384	37.037	0.00	0.00	0.00	2.82
883	1041	9.167311	GTCCAGATACAGAAAATTAGTCAATGT	57.833	33.333	0.00	0.00	0.00	2.71
884	1042	9.383519	TCCAGATACAGAAAATTAGTCAATGTC	57.616	33.333	0.00	0.00	0.00	3.06
885	1043	9.388506	CCAGATACAGAAAATTAGTCAATGTCT	57.611	33.333	0.00	0.00	0.00	3.41
1479	1658	3.485431	CTCTGCCGCAGCTTCGTG	61.485	66.667	15.98	0.00	40.80	4.35
1530	1709	3.740495	CTCCCCGGAGAGGCTGCTA	62.740	68.421	4.78	0.00	44.53	3.49
1701	1880	0.676151	AGTACGTCCAGGACTCCGTC	60.676	60.000	17.95	5.48	41.01	4.79
1702	1881	0.957395	GTACGTCCAGGACTCCGTCA	60.957	60.000	17.95	0.00	33.68	4.35
1824	2003	2.888863	GTCCTCAGGGAGACGCTG	59.111	66.667	9.06	9.06	43.12	5.18
2114	2293	4.138487	AGTTCTTGGAGAAGTTCGTTGT	57.862	40.909	0.00	0.00	34.37	3.32
2127	2306	0.828762	TCGTTGTCCCCTTCGAGGAA	60.829	55.000	0.00	0.00	37.67	3.36
2196	2375	2.328099	GCCGGTGAAAGCTGAGTGG	61.328	63.158	1.90	0.00	0.00	4.00
2217	2396	2.165437	GGCAGTGAGTGACTAGAAGAGG	59.835	54.545	0.00	0.00	31.73	3.69
2233	2412	0.908198	GAGGATTCTGGAGGTGTGCT	59.092	55.000	0.00	0.00	0.00	4.40
2235	2414	1.707427	AGGATTCTGGAGGTGTGCTTT	59.293	47.619	0.00	0.00	0.00	3.51
2353	2546	6.991938	TCATAATTTTGGAACTTGGAAGTGG	58.008	36.000	0.00	0.00	39.66	4.00
2391	2585	8.527810	TGAATAATGGATTTGGTGTAAAACTCC	58.472	33.333	0.00	0.00	32.62	3.85
2420	2616	7.094805	GCAAACATGTCTATTTGGTTCTGTCTA	60.095	37.037	0.00	0.00	36.51	2.59
2513	2720	8.623903	GGTCAATTCTTATTGTGCATATCTGAA	58.376	33.333	0.00	0.00	41.54	3.02
2586	2794	4.547671	AGGAGTAGCTGGCTTCAGTATAA	58.452	43.478	0.00	0.00	40.51	0.98
2589	2838	5.524281	GGAGTAGCTGGCTTCAGTATAAAAC	59.476	44.000	0.00	0.00	40.51	2.43
2595	2844	7.762382	AGCTGGCTTCAGTATAAAACAAATAC	58.238	34.615	0.00	0.00	40.51	1.89
2625	2874	8.182227	GGGAGTGTATATTTTGTAAGTTGCTTC	58.818	37.037	0.00	0.00	0.00	3.86
2666	2915	2.295070	TCGCCTTTTTAAGCCTTTGGAC	59.705	45.455	0.00	0.00	0.00	4.02
2808	3198	6.784031	AGGTGACTGAGATTTATGAAACCTT	58.216	36.000	0.00	0.00	41.13	3.50
2912	3461	1.762957	GTTGCCCTGTCTAGATAGCCA	59.237	52.381	10.86	7.35	0.00	4.75
2914	3463	1.762957	TGCCCTGTCTAGATAGCCAAC	59.237	52.381	10.86	1.14	0.00	3.77
3050	3672	0.249280	GCCGGTTTTGACCTGTTTGG	60.249	55.000	1.90	0.00	42.93	3.28
3053	3675	1.950909	CGGTTTTGACCTGTTTGGCTA	59.049	47.619	0.00	0.00	40.22	3.93
3187	3815	7.320443	TGCCAATAGATTGTCAGTGAATTAC	57.680	36.000	0.00	0.00	36.06	1.89

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	2.417719	CCACACTAAGCCTCAGAACAC	58.582	52.381	0.00	0.00	0.00	3.32
25	26	1.966451	GCAACGCCACACTAAGCCT	60.966	57.895	0.00	0.00	0.00	4.58
79	80	0.687920	TAACCGGACCATGCAGAACA	59.312	50.000	9.46	0.00	0.00	3.18
103	104	2.029290	ACCCACATATAACTCCGATCGC	60.029	50.000	10.32	0.00	0.00	4.58
104	105	3.254903	TGACCCACATATAACTCCGATCG	59.745	47.826	8.51	8.51	0.00	3.69
183	184	6.573094	GCAAGATATTTCTGAACCAGGCTTTT	60.573	38.462	0.00	0.00	30.72	2.27
217	218	7.781324	ACAAATTTCTTTGAGTGGTATCCAT	57.219	32.000	5.17	0.00	43.71	3.41
235	236	4.380444	CGGCCATGCAAGTAGTAACAAATT	60.380	41.667	2.24	0.00	0.00	1.82
245	246	2.045438	CCACCGGCCATGCAAGTA	60.045	61.111	0.00	0.00	0.00	2.24
294	304	2.517875	CAGCAGGGCATACCAGGC	60.518	66.667	0.00	0.00	43.89	4.85
298	308	4.489771	ACGGCAGCAGGGCATACC	62.490	66.667	0.00	0.00	43.60	2.73
397	552	0.850100	TCCTCCCACACACCAAACAT	59.150	50.000	0.00	0.00	0.00	2.71
409	564	2.679342	CCGGCAAGGATTCCTCCCA	61.679	63.158	17.74	0.00	43.21	4.37
415	570	1.366854	GGACGAACCGGCAAGGATTC	61.367	60.000	0.00	0.00	45.00	2.52
457	612	1.076549	GAAGGAATGGTGGCACCCA	59.923	57.895	32.61	20.90	37.50	4.51
503	658	1.404986	CCGGTATGCGAAGGAAAGTGA	60.405	52.381	0.00	0.00	0.00	3.41
513	668	1.153784	GGTTTCGACCGGTATGCGA	60.154	57.895	7.34	10.48	0.00	5.10
524	679	1.457346	GACGAGTCCTAGGGTTTCGA	58.543	55.000	26.31	0.08	35.18	3.71
525	680	0.455005	GGACGAGTCCTAGGGTTTCG	59.545	60.000	21.16	21.16	46.16	3.46
547	702	2.355126	CGCTGACGACACTGCTGT	60.355	61.111	0.00	0.00	43.93	4.40
554	709	1.513373	GTATGCGACGCTGACGACA	60.513	57.895	22.08	0.00	43.93	4.35
561	716	0.460284	CCAAGAAGGTATGCGACGCT	60.460	55.000	22.08	9.12	0.00	5.07
563	718	1.560923	CTCCAAGAAGGTATGCGACG	58.439	55.000	0.00	0.00	39.02	5.12
615	770	1.152756	GAAACACCCCACCACAGCT	60.153	57.895	0.00	0.00	0.00	4.24
680	835	6.585416	AGAAGAAGAAACAAATGCCAACAAT	58.415	32.000	0.00	0.00	0.00	2.71
700	855	4.339247	TCAAGCCCAAAGACAGAAAAGAAG	59.661	41.667	0.00	0.00	0.00	2.85
703	858	4.038402	ACATCAAGCCCAAAGACAGAAAAG	59.962	41.667	0.00	0.00	0.00	2.27
736	894	1.341369	TTGTACACATCGCGACGCTG	61.341	55.000	12.93	9.16	0.00	5.18
739	897	0.989164	ACATTGTACACATCGCGACG	59.011	50.000	12.93	5.44	0.00	5.12
743	901	4.153475	ACCAACTAACATTGTACACATCGC	59.847	41.667	0.00	0.00	0.00	4.58
746	904	7.759489	ATCAACCAACTAACATTGTACACAT	57.241	32.000	0.00	0.00	0.00	3.21
760	918	6.223120	GCTTTGTATTCCAAATCAACCAACT	58.777	36.000	0.00	0.00	42.02	3.16
761	919	5.118510	CGCTTTGTATTCCAAATCAACCAAC	59.881	40.000	0.00	0.00	42.02	3.77
769	927	3.094484	TCCCCGCTTTGTATTCCAAAT	57.906	42.857	0.00	0.00	42.02	2.32
774	932	3.710326	GGATTTCCCCGCTTTGTATTC	57.290	47.619	0.00	0.00	0.00	1.75
792	950	4.534797	TCGAAAAGTTTACCCAAAAGGGA	58.465	39.130	7.71	0.00	41.63	4.20
795	953	6.981559	TGGAAATCGAAAAGTTTACCCAAAAG	59.018	34.615	0.00	0.00	0.00	2.27
800	958	4.482386	GCTGGAAATCGAAAAGTTTACCC	58.518	43.478	0.00	0.00	0.00	3.69
801	959	4.156182	CGCTGGAAATCGAAAAGTTTACC	58.844	43.478	0.00	0.00	0.00	2.85
882	1040	6.975772	AGATAGCTTTACTCGTTCATTGAGAC	59.024	38.462	0.00	0.00	36.93	3.36
883	1041	7.101652	AGATAGCTTTACTCGTTCATTGAGA	57.898	36.000	0.00	0.00	36.93	3.27
884	1042	9.123709	GATAGATAGCTTTACTCGTTCATTGAG	57.876	37.037	0.00	0.00	39.40	3.02
885	1043	8.082852	GGATAGATAGCTTTACTCGTTCATTGA	58.917	37.037	0.00	0.00	0.00	2.57
886	1044	7.867909	TGGATAGATAGCTTTACTCGTTCATTG	59.132	37.037	0.00	0.00	0.00	2.82
887	1045	7.952671	TGGATAGATAGCTTTACTCGTTCATT	58.047	34.615	0.00	0.00	0.00	2.57
888	1046	7.231722	ACTGGATAGATAGCTTTACTCGTTCAT	59.768	37.037	0.00	0.00	0.00	2.57
889	1047	6.546403	ACTGGATAGATAGCTTTACTCGTTCA	59.454	38.462	0.00	0.00	0.00	3.18
1153	1332	1.004918	CGAAGCTGTTTCCCGGAGT	60.005	57.895	0.73	0.00	31.82	3.85
1479	1658	1.518903	GCCAGAACTGCACCTTGGAC	61.519	60.000	6.08	0.00	0.00	4.02
1662	1841	2.756400	GGGTGCATGGTGACCAGA	59.244	61.111	11.23	0.00	36.75	3.86
1701	1880	4.809496	AGCTCAATGGCCCGCCTG	62.809	66.667	7.35	0.00	36.94	4.85
1702	1881	4.496336	GAGCTCAATGGCCCGCCT	62.496	66.667	9.40	0.00	36.94	5.52
1824	2003	2.284405	TCCTCCTTCGACCACCCC	60.284	66.667	0.00	0.00	0.00	4.95
2088	2267	3.991121	CGAACTTCTCCAAGAACTTCTCC	59.009	47.826	0.00	0.00	30.11	3.71
2114	2293	2.326428	GGATACATTCCTCGAAGGGGA	58.674	52.381	0.00	0.00	41.78	4.81
2136	2315	4.235762	TAAGCATCGCCGAGGCCC	62.236	66.667	21.00	0.00	40.43	5.80
2177	2356	1.302033	CACTCAGCTTTCACCGGCT	60.302	57.895	0.00	0.00	39.60	5.52
2196	2375	2.165437	CCTCTTCTAGTCACTCACTGCC	59.835	54.545	0.00	0.00	36.43	4.85
2217	2396	1.815003	CCAAAGCACACCTCCAGAATC	59.185	52.381	0.00	0.00	0.00	2.52
2233	2412	8.380099	AGTAGAATTGAGGTTATACACACCAAA	58.620	33.333	0.00	0.00	36.67	3.28
2235	2414	7.179516	TCAGTAGAATTGAGGTTATACACACCA	59.820	37.037	0.00	0.00	36.67	4.17
2391	2585	4.685169	ACCAAATAGACATGTTTGCTCG	57.315	40.909	0.00	0.00	36.49	5.03
2420	2616	4.631813	GGCGATGTTCATCTTCTGTAAACT	59.368	41.667	10.44	0.00	0.00	2.66
2513	2720	5.067805	GCATTACTTTAGGGCTAACAGCAAT	59.932	40.000	0.00	0.00	44.75	3.56
2595	2844	9.840427	CAACTTACAAAATATACACTCCCAAAG	57.160	33.333	0.00	0.00	0.00	2.77
2625	2874	9.436957	AAGGCGACTGAGGTATATAAATATTTG	57.563	33.333	11.05	0.00	42.68	2.32
2666	2915	5.047872	TGAGATGTGAATTGTTGGATGTTGG	60.048	40.000	0.00	0.00	0.00	3.77
2715	2965	4.311816	ACTTCAGTGCAAGTTTGAATGG	57.688	40.909	0.00	0.00	32.34	3.16
2716	2966	4.026310	GCAACTTCAGTGCAAGTTTGAATG	60.026	41.667	14.29	8.05	42.81	2.67
2766	3156	2.771372	ACCTGAAATTGCACCTTGGTTT	59.229	40.909	0.00	0.00	0.00	3.27
2806	3196	1.153086	CCCAGGGATGCTCCGAAAG	60.153	63.158	0.00	0.00	37.43	2.62
2808	3198	2.285368	ACCCAGGGATGCTCCGAA	60.285	61.111	14.54	0.00	37.43	4.30
2912	3461	3.643320	TGGACTTCTCTCATCACACTGTT	59.357	43.478	0.00	0.00	0.00	3.16
2914	3463	3.949842	TGGACTTCTCTCATCACACTG	57.050	47.619	0.00	0.00	0.00	3.66
3050	3672	4.686554	CACTGACTAGGACAAAACTGTAGC	59.313	45.833	0.00	0.00	0.00	3.58
3053	3675	3.454812	ACCACTGACTAGGACAAAACTGT	59.545	43.478	0.00	0.00	0.00	3.55
3187	3815	3.405170	AAAATGCCAGTAAATCGAGCG	57.595	42.857	0.00	0.00	0.00	5.03

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.