Multiple sequence alignment - TraesCS6A01G303400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G303400 chr6A 100.000 2713 0 0 1 2713 536574914 536577626 0.000000e+00 5011.0
1 TraesCS6A01G303400 chr6B 90.896 1406 63 31 946 2303 584081346 584079958 0.000000e+00 1827.0
2 TraesCS6A01G303400 chr6B 89.243 502 33 8 88 585 584082460 584081976 2.310000e-170 608.0
3 TraesCS6A01G303400 chr6B 87.255 408 41 6 2299 2704 584072690 584072292 3.180000e-124 455.0
4 TraesCS6A01G303400 chr6B 84.270 267 14 4 685 944 584081626 584081381 4.520000e-58 235.0
5 TraesCS6A01G303400 chr6D 88.645 1277 59 41 766 1976 390024327 390025583 0.000000e+00 1476.0
6 TraesCS6A01G303400 chr6D 85.789 380 45 7 2261 2638 390038256 390038628 7.040000e-106 394.0
7 TraesCS6A01G303400 chr6D 96.330 218 8 0 2059 2276 390027537 390027754 2.570000e-95 359.0
8 TraesCS6A01G303400 chr6D 91.250 240 16 3 83 322 390006067 390006301 3.370000e-84 322.0
9 TraesCS6A01G303400 chr6D 91.146 192 10 2 377 566 390006639 390006825 1.250000e-63 254.0
10 TraesCS6A01G303400 chr6D 85.897 234 21 6 1626 1853 390229580 390229807 3.490000e-59 239.0
11 TraesCS6A01G303400 chr2A 84.279 229 27 8 2422 2643 102894337 102894111 5.880000e-52 215.0
12 TraesCS6A01G303400 chr2A 81.897 116 16 5 1380 1494 738342972 738343083 2.880000e-15 93.5
13 TraesCS6A01G303400 chr3D 82.283 254 33 10 2400 2644 147472467 147472717 2.740000e-50 209.0
14 TraesCS6A01G303400 chr3D 90.426 94 8 1 1 93 168927366 168927459 3.670000e-24 122.0
15 TraesCS6A01G303400 chr7B 81.275 251 41 5 2399 2644 637479189 637479438 5.930000e-47 198.0
16 TraesCS6A01G303400 chr7B 89.691 97 9 1 1 96 224377499 224377403 3.670000e-24 122.0
17 TraesCS6A01G303400 chr7B 90.426 94 8 1 1 93 463226135 463226228 3.670000e-24 122.0
18 TraesCS6A01G303400 chr7B 94.444 36 1 1 2345 2379 145376530 145376495 1.000000e-03 54.7
19 TraesCS6A01G303400 chr7D 80.567 247 39 8 2399 2637 586409515 586409270 5.970000e-42 182.0
20 TraesCS6A01G303400 chr5A 80.237 253 36 12 2400 2642 452433120 452432872 7.720000e-41 178.0
21 TraesCS6A01G303400 chr4B 79.121 273 39 14 2401 2657 66471312 66471042 3.590000e-39 172.0
22 TraesCS6A01G303400 chr2B 78.889 270 43 10 2400 2665 697980703 697980962 1.290000e-38 171.0
23 TraesCS6A01G303400 chr2B 80.000 225 36 7 2401 2618 532512086 532511864 1.010000e-34 158.0
24 TraesCS6A01G303400 chr2B 89.691 97 9 1 1 96 320523985 320523889 3.670000e-24 122.0
25 TraesCS6A01G303400 chr2B 83.333 138 16 7 2258 2392 586895671 586895804 1.320000e-23 121.0
26 TraesCS6A01G303400 chr4A 90.722 97 8 1 1 96 640853772 640853676 7.880000e-26 128.0
27 TraesCS6A01G303400 chr1D 91.489 94 6 2 1 92 175821622 175821715 7.880000e-26 128.0
28 TraesCS6A01G303400 chr3B 92.222 90 6 1 1 89 418059926 418060015 2.840000e-25 126.0
29 TraesCS6A01G303400 chr3B 91.304 92 7 1 1 91 640055153 640055062 1.020000e-24 124.0
30 TraesCS6A01G303400 chr4D 89.691 97 9 1 1 96 148508314 148508218 3.670000e-24 122.0
31 TraesCS6A01G303400 chr2D 85.227 88 10 2 1407 1494 606695579 606695663 1.340000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G303400 chr6A 536574914 536577626 2712 False 5011.0 5011 100.000000 1 2713 1 chr6A.!!$F1 2712
1 TraesCS6A01G303400 chr6B 584079958 584082460 2502 True 890.0 1827 88.136333 88 2303 3 chr6B.!!$R2 2215
2 TraesCS6A01G303400 chr6D 390024327 390027754 3427 False 917.5 1476 92.487500 766 2276 2 chr6D.!!$F4 1510
3 TraesCS6A01G303400 chr6D 390006067 390006825 758 False 288.0 322 91.198000 83 566 2 chr6D.!!$F3 483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 928 0.033405 AAGAAGGATGCAGCATGGCT 60.033 50.0 14.22 1.29 40.77 4.75 F
871 1473 0.037232 ACGCAGAGTTCTTGCTACCC 60.037 55.0 0.00 0.00 0.00 3.69 F
1178 1820 0.109272 CTCGTGCGACACCATACACT 60.109 55.0 4.73 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 2250 0.036732 TGCAAGAACACAGGGCTAGG 59.963 55.0 0.0 0.0 0.00 3.02 R
1681 2344 0.107606 ACACAACACGGGTGCAGTAA 60.108 50.0 0.0 0.0 39.87 2.24 R
2414 4964 0.319211 TCTCCTGTTACAACGCACGG 60.319 55.0 0.0 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.947644 TGTCTATGTACATACGTATGTGGT 57.052 37.500 38.87 28.24 45.77 4.16
40 41 8.625786 ATGTCTATGTACATACGTATGTGGTA 57.374 34.615 38.87 27.94 45.77 3.25
41 42 8.091385 TGTCTATGTACATACGTATGTGGTAG 57.909 38.462 38.87 32.76 45.77 3.18
42 43 7.716560 TGTCTATGTACATACGTATGTGGTAGT 59.283 37.037 38.87 25.29 45.77 2.73
43 44 8.226448 GTCTATGTACATACGTATGTGGTAGTC 58.774 40.741 38.87 28.81 45.77 2.59
44 45 8.152898 TCTATGTACATACGTATGTGGTAGTCT 58.847 37.037 38.87 22.67 45.77 3.24
45 46 9.428097 CTATGTACATACGTATGTGGTAGTCTA 57.572 37.037 38.87 21.24 45.77 2.59
46 47 8.859236 ATGTACATACGTATGTGGTAGTCTAT 57.141 34.615 38.87 22.04 45.77 1.98
47 48 8.681486 TGTACATACGTATGTGGTAGTCTATT 57.319 34.615 38.87 18.19 45.77 1.73
48 49 9.123902 TGTACATACGTATGTGGTAGTCTATTT 57.876 33.333 38.87 18.02 45.77 1.40
49 50 9.390795 GTACATACGTATGTGGTAGTCTATTTG 57.609 37.037 38.87 14.17 45.77 2.32
50 51 8.229253 ACATACGTATGTGGTAGTCTATTTGA 57.771 34.615 34.29 0.00 44.66 2.69
51 52 8.689061 ACATACGTATGTGGTAGTCTATTTGAA 58.311 33.333 34.29 0.00 44.66 2.69
52 53 9.524106 CATACGTATGTGGTAGTCTATTTGAAA 57.476 33.333 24.46 0.00 0.00 2.69
54 55 8.420374 ACGTATGTGGTAGTCTATTTGAAATG 57.580 34.615 0.00 0.00 0.00 2.32
55 56 8.038944 ACGTATGTGGTAGTCTATTTGAAATGT 58.961 33.333 0.00 0.00 0.00 2.71
56 57 8.879759 CGTATGTGGTAGTCTATTTGAAATGTT 58.120 33.333 0.00 0.00 0.00 2.71
125 133 3.488310 GCATGCCGCTGAATTAATGAAAG 59.512 43.478 6.36 0.00 37.77 2.62
127 135 4.782019 TGCCGCTGAATTAATGAAAGTT 57.218 36.364 0.00 0.00 0.00 2.66
128 136 4.484236 TGCCGCTGAATTAATGAAAGTTG 58.516 39.130 0.00 0.00 0.00 3.16
129 137 3.304293 GCCGCTGAATTAATGAAAGTTGC 59.696 43.478 0.00 0.00 0.00 4.17
130 138 4.737054 CCGCTGAATTAATGAAAGTTGCT 58.263 39.130 0.00 0.00 0.00 3.91
131 139 5.676079 GCCGCTGAATTAATGAAAGTTGCTA 60.676 40.000 0.00 0.00 0.00 3.49
132 140 6.498304 CCGCTGAATTAATGAAAGTTGCTAT 58.502 36.000 0.00 0.00 0.00 2.97
133 141 6.974622 CCGCTGAATTAATGAAAGTTGCTATT 59.025 34.615 0.00 0.00 0.00 1.73
134 142 7.166473 CCGCTGAATTAATGAAAGTTGCTATTC 59.834 37.037 0.00 0.00 0.00 1.75
135 143 7.912250 CGCTGAATTAATGAAAGTTGCTATTCT 59.088 33.333 0.00 0.00 0.00 2.40
136 144 9.017669 GCTGAATTAATGAAAGTTGCTATTCTG 57.982 33.333 0.00 0.00 0.00 3.02
137 145 9.512435 CTGAATTAATGAAAGTTGCTATTCTGG 57.488 33.333 0.00 0.00 0.00 3.86
138 146 7.975616 TGAATTAATGAAAGTTGCTATTCTGGC 59.024 33.333 0.00 0.00 0.00 4.85
139 147 4.361451 AATGAAAGTTGCTATTCTGGCG 57.639 40.909 0.00 0.00 0.00 5.69
140 148 2.083774 TGAAAGTTGCTATTCTGGCGG 58.916 47.619 0.00 0.00 0.00 6.13
141 149 2.084546 GAAAGTTGCTATTCTGGCGGT 58.915 47.619 0.00 0.00 0.00 5.68
142 150 1.739067 AAGTTGCTATTCTGGCGGTC 58.261 50.000 0.00 0.00 0.00 4.79
143 151 0.460284 AGTTGCTATTCTGGCGGTCG 60.460 55.000 0.00 0.00 0.00 4.79
144 152 0.459585 GTTGCTATTCTGGCGGTCGA 60.460 55.000 0.00 0.00 0.00 4.20
148 156 1.932604 GCTATTCTGGCGGTCGATCAG 60.933 57.143 0.00 0.00 0.00 2.90
173 181 3.575256 TGATCTTTCCAAATTGCTGCTGT 59.425 39.130 0.00 0.00 0.00 4.40
241 249 7.632721 TGTAATTTTTGAACACGTTCCTAGAC 58.367 34.615 7.43 0.00 38.77 2.59
244 252 4.395959 TTTGAACACGTTCCTAGACAGT 57.604 40.909 7.43 0.00 38.77 3.55
253 261 4.219944 ACGTTCCTAGACAGTCTAATTGCA 59.780 41.667 11.57 0.00 0.00 4.08
258 266 5.835819 TCCTAGACAGTCTAATTGCATAGCT 59.164 40.000 11.57 0.00 0.00 3.32
265 273 5.118357 CAGTCTAATTGCATAGCTCGTGATC 59.882 44.000 0.00 0.00 0.00 2.92
269 277 3.650070 TTGCATAGCTCGTGATCTAGG 57.350 47.619 0.00 0.00 0.00 3.02
275 283 5.564768 CATAGCTCGTGATCTAGGTAATCG 58.435 45.833 0.00 0.00 30.19 3.34
289 299 1.332144 TAATCGGGCTAAGTGCGGGT 61.332 55.000 0.00 0.00 44.05 5.28
322 332 1.003233 GGATGAAAGAACCCCGACTGT 59.997 52.381 0.00 0.00 0.00 3.55
355 671 2.888594 TCTTGTAACCGATGCTACTGC 58.111 47.619 0.00 0.00 40.20 4.40
426 742 5.869344 GGCCTTACACAAAATTTCAGAATCC 59.131 40.000 0.00 0.00 0.00 3.01
428 744 6.677913 CCTTACACAAAATTTCAGAATCCGT 58.322 36.000 0.00 0.00 0.00 4.69
429 745 7.574217 GCCTTACACAAAATTTCAGAATCCGTA 60.574 37.037 0.00 0.00 0.00 4.02
430 746 8.293867 CCTTACACAAAATTTCAGAATCCGTAA 58.706 33.333 0.00 0.00 0.00 3.18
431 747 9.840427 CTTACACAAAATTTCAGAATCCGTAAT 57.160 29.630 0.00 0.00 0.00 1.89
499 819 2.983229 AGAAGGATGTGACATGTCAGC 58.017 47.619 28.54 21.52 40.75 4.26
504 824 4.449131 AGGATGTGACATGTCAGCATAAG 58.551 43.478 28.54 0.00 40.75 1.73
536 856 2.355132 AGATAGCTACGTGTCAGTTCCG 59.645 50.000 0.00 0.00 0.00 4.30
540 860 0.594602 CTACGTGTCAGTTCCGGTCA 59.405 55.000 0.00 0.00 0.00 4.02
575 895 7.484007 GTCACATCATCATTGAAGTCATTTCAC 59.516 37.037 0.00 0.00 45.22 3.18
591 911 1.840737 TCACGAGAGGGAGGAGAAAG 58.159 55.000 0.00 0.00 39.71 2.62
592 912 1.354705 TCACGAGAGGGAGGAGAAAGA 59.645 52.381 0.00 0.00 39.71 2.52
594 914 2.165437 CACGAGAGGGAGGAGAAAGAAG 59.835 54.545 0.00 0.00 35.60 2.85
595 915 1.754226 CGAGAGGGAGGAGAAAGAAGG 59.246 57.143 0.00 0.00 0.00 3.46
597 917 3.653164 GAGAGGGAGGAGAAAGAAGGAT 58.347 50.000 0.00 0.00 0.00 3.24
598 918 3.383223 AGAGGGAGGAGAAAGAAGGATG 58.617 50.000 0.00 0.00 0.00 3.51
599 919 1.843206 AGGGAGGAGAAAGAAGGATGC 59.157 52.381 0.00 0.00 0.00 3.91
600 920 1.561542 GGGAGGAGAAAGAAGGATGCA 59.438 52.381 0.00 0.00 0.00 3.96
601 921 2.421248 GGGAGGAGAAAGAAGGATGCAG 60.421 54.545 0.00 0.00 0.00 4.41
603 923 1.632409 AGGAGAAAGAAGGATGCAGCA 59.368 47.619 3.51 0.00 0.00 4.41
605 925 2.358267 GGAGAAAGAAGGATGCAGCATG 59.642 50.000 14.22 0.00 40.87 4.06
606 926 2.358267 GAGAAAGAAGGATGCAGCATGG 59.642 50.000 14.22 0.00 35.86 3.66
607 927 0.822164 AAAGAAGGATGCAGCATGGC 59.178 50.000 14.22 0.00 35.86 4.40
608 928 0.033405 AAGAAGGATGCAGCATGGCT 60.033 50.000 14.22 1.29 40.77 4.75
632 970 5.733226 GTCTTGGGACCAAAACAAAAATG 57.267 39.130 5.17 0.00 36.53 2.32
639 977 5.650266 GGGACCAAAACAAAAATGGACTTTT 59.350 36.000 0.00 0.00 38.73 2.27
640 978 6.151985 GGGACCAAAACAAAAATGGACTTTTT 59.848 34.615 0.00 0.00 45.70 1.94
663 1001 5.975410 TTTTTGCGAGGTAACAAAAATGG 57.025 34.783 8.99 0.00 45.73 3.16
664 1002 4.920640 TTTGCGAGGTAACAAAAATGGA 57.079 36.364 0.00 0.00 41.41 3.41
665 1003 3.907894 TGCGAGGTAACAAAAATGGAC 57.092 42.857 0.00 0.00 41.41 4.02
666 1004 3.482436 TGCGAGGTAACAAAAATGGACT 58.518 40.909 0.00 0.00 41.41 3.85
669 1007 3.439129 CGAGGTAACAAAAATGGACTCCC 59.561 47.826 0.00 0.00 41.41 4.30
679 1017 8.306313 ACAAAAATGGACTCCCCTTTAATATC 57.694 34.615 0.00 0.00 31.33 1.63
680 1018 8.122481 ACAAAAATGGACTCCCCTTTAATATCT 58.878 33.333 0.00 0.00 31.33 1.98
681 1019 9.640952 CAAAAATGGACTCCCCTTTAATATCTA 57.359 33.333 0.00 0.00 31.33 1.98
683 1021 6.607004 ATGGACTCCCCTTTAATATCTACG 57.393 41.667 0.00 0.00 35.38 3.51
693 1291 6.015688 CCCTTTAATATCTACGTACTGGAGCA 60.016 42.308 0.00 0.00 0.00 4.26
696 1294 5.392767 AATATCTACGTACTGGAGCATGG 57.607 43.478 0.00 0.00 0.00 3.66
698 1296 2.453521 TCTACGTACTGGAGCATGGTT 58.546 47.619 0.00 0.00 0.00 3.67
722 1320 0.869880 CATGCATGCGATGTTGCCTG 60.870 55.000 14.93 0.00 38.08 4.85
723 1321 2.011741 ATGCATGCGATGTTGCCTGG 62.012 55.000 14.09 0.00 38.08 4.45
747 1345 1.313772 ACTTGGCATGCACAACGTAA 58.686 45.000 21.36 1.84 0.00 3.18
748 1346 1.885887 ACTTGGCATGCACAACGTAAT 59.114 42.857 21.36 0.71 0.00 1.89
749 1347 2.252747 CTTGGCATGCACAACGTAATG 58.747 47.619 21.36 4.87 0.00 1.90
750 1348 1.528129 TGGCATGCACAACGTAATGA 58.472 45.000 21.36 0.00 0.00 2.57
751 1349 1.882623 TGGCATGCACAACGTAATGAA 59.117 42.857 21.36 0.00 0.00 2.57
752 1350 2.250188 GGCATGCACAACGTAATGAAC 58.750 47.619 21.36 0.00 0.00 3.18
773 1371 4.846040 ACGTATGTCTCCTCAACTAGACT 58.154 43.478 0.00 0.00 42.17 3.24
802 1400 2.182827 CATGTCTCCTGTTCCTCCTCA 58.817 52.381 0.00 0.00 0.00 3.86
860 1462 6.768861 ACTGTAGAGATAAGATAACGCAGAGT 59.231 38.462 0.00 0.00 0.00 3.24
871 1473 0.037232 ACGCAGAGTTCTTGCTACCC 60.037 55.000 0.00 0.00 0.00 3.69
902 1511 0.740737 GGAAGGCGTTAATGCATGCT 59.259 50.000 20.33 6.55 36.28 3.79
904 1513 0.179129 AAGGCGTTAATGCATGCTGC 60.179 50.000 20.33 12.31 45.29 5.25
944 1553 1.250328 CTTGGAGCCTGCATGTTGAA 58.750 50.000 0.00 0.00 0.00 2.69
952 1594 2.012673 CCTGCATGTTGAACTAGAGGC 58.987 52.381 0.00 0.00 0.00 4.70
1022 1664 1.338337 ACCAGCTCCGATACAATCTCG 59.662 52.381 0.00 0.00 35.92 4.04
1033 1675 5.342525 CCGATACAATCTCGTAATACAGTGC 59.657 44.000 0.00 0.00 34.36 4.40
1044 1686 5.526479 TCGTAATACAGTGCTCGACTAAGAT 59.474 40.000 0.00 0.00 31.73 2.40
1045 1687 6.037940 TCGTAATACAGTGCTCGACTAAGATT 59.962 38.462 0.00 0.00 31.73 2.40
1099 1741 1.463674 ATGGCGATGTTCAAGGGTTC 58.536 50.000 0.00 0.00 0.00 3.62
1100 1742 0.953471 TGGCGATGTTCAAGGGTTCG 60.953 55.000 0.00 0.00 0.00 3.95
1112 1754 1.737008 GGGTTCGCTCCTCGTGTTC 60.737 63.158 0.00 0.00 39.67 3.18
1165 1807 2.861006 GGCCGAAGAAACTCGTGC 59.139 61.111 0.00 0.00 37.11 5.34
1168 1810 1.773496 CCGAAGAAACTCGTGCGAC 59.227 57.895 0.00 0.00 37.11 5.19
1174 1816 1.271379 AGAAACTCGTGCGACACCATA 59.729 47.619 4.73 0.00 0.00 2.74
1178 1820 0.109272 CTCGTGCGACACCATACACT 60.109 55.000 4.73 0.00 0.00 3.55
1183 1825 3.242969 CGTGCGACACCATACACTACTAT 60.243 47.826 4.73 0.00 0.00 2.12
1187 1829 5.237996 TGCGACACCATACACTACTATCTAC 59.762 44.000 0.00 0.00 0.00 2.59
1188 1830 5.469421 GCGACACCATACACTACTATCTACT 59.531 44.000 0.00 0.00 0.00 2.57
1189 1831 6.347563 GCGACACCATACACTACTATCTACTC 60.348 46.154 0.00 0.00 0.00 2.59
1190 1832 6.147492 CGACACCATACACTACTATCTACTCC 59.853 46.154 0.00 0.00 0.00 3.85
1191 1833 6.907961 ACACCATACACTACTATCTACTCCA 58.092 40.000 0.00 0.00 0.00 3.86
1198 1840 9.696572 ATACACTACTATCTACTCCAGTTTTGA 57.303 33.333 0.00 0.00 0.00 2.69
1199 1841 8.418597 ACACTACTATCTACTCCAGTTTTGAA 57.581 34.615 0.00 0.00 0.00 2.69
1200 1842 9.036980 ACACTACTATCTACTCCAGTTTTGAAT 57.963 33.333 0.00 0.00 0.00 2.57
1207 1849 7.364522 TCTACTCCAGTTTTGAATCGATTTG 57.635 36.000 12.81 5.21 0.00 2.32
1208 1850 7.158697 TCTACTCCAGTTTTGAATCGATTTGA 58.841 34.615 12.81 1.09 0.00 2.69
1209 1851 6.633500 ACTCCAGTTTTGAATCGATTTGAA 57.367 33.333 12.81 7.50 0.00 2.69
1211 1853 6.918022 ACTCCAGTTTTGAATCGATTTGAAAC 59.082 34.615 26.39 26.39 0.00 2.78
1214 1856 7.761704 TCCAGTTTTGAATCGATTTGAAACAAA 59.238 29.630 30.58 23.76 35.48 2.83
1215 1857 8.550376 CCAGTTTTGAATCGATTTGAAACAAAT 58.450 29.630 30.58 18.90 36.41 2.32
1216 1858 9.919348 CAGTTTTGAATCGATTTGAAACAAATT 57.081 25.926 30.58 18.69 36.41 1.82
1324 1969 3.476419 CCGGGCCGTGGTTATCCT 61.476 66.667 26.32 0.00 34.23 3.24
1649 2312 1.662517 TGATGTGTGTGCTTGTTCGT 58.337 45.000 0.00 0.00 0.00 3.85
1681 2344 3.512329 TGGTCAGTGTACGGATGTATTGT 59.488 43.478 0.00 0.00 32.11 2.71
1748 2417 1.134788 GCTCTTCTACGCTGGGCTTTA 60.135 52.381 0.00 0.00 0.00 1.85
1767 2436 7.201992 GGGCTTTATTAATCAATTCATCCACCA 60.202 37.037 0.00 0.00 0.00 4.17
1768 2437 7.869429 GGCTTTATTAATCAATTCATCCACCAG 59.131 37.037 0.00 0.00 0.00 4.00
1769 2438 7.383300 GCTTTATTAATCAATTCATCCACCAGC 59.617 37.037 0.00 0.00 0.00 4.85
1857 2531 2.597805 AGTCGTCCTCCGTGCTGT 60.598 61.111 0.00 0.00 37.94 4.40
1868 2543 1.154205 CCGTGCTGTATGCTAGTGCC 61.154 60.000 0.00 0.00 43.37 5.01
1879 2554 2.664851 TAGTGCCTGTGCGTGTGC 60.665 61.111 0.00 0.00 41.78 4.57
1912 2591 1.654463 CGTGCGGTTTAGTTTCAACG 58.346 50.000 0.00 0.00 0.00 4.10
1927 2606 1.203287 TCAACGTCTCTGCTGATGGAG 59.797 52.381 0.00 0.00 0.00 3.86
1951 2630 0.934496 TGAACGTGCTTGAACGAAGG 59.066 50.000 8.26 0.00 46.49 3.46
1959 2638 4.328983 CGTGCTTGAACGAAGGTTGTATAT 59.671 41.667 0.00 0.00 46.49 0.86
1961 2640 6.035220 CGTGCTTGAACGAAGGTTGTATATAA 59.965 38.462 0.00 0.00 46.49 0.98
1962 2641 7.412129 CGTGCTTGAACGAAGGTTGTATATAAA 60.412 37.037 0.00 0.00 46.49 1.40
1963 2642 7.691050 GTGCTTGAACGAAGGTTGTATATAAAC 59.309 37.037 0.00 0.00 36.24 2.01
1964 2643 7.148373 TGCTTGAACGAAGGTTGTATATAAACC 60.148 37.037 14.25 14.25 46.27 3.27
1993 4489 8.970020 TGCATATTGAAATACCAAAAGATGAGT 58.030 29.630 0.00 0.00 0.00 3.41
2007 4507 7.987458 CCAAAAGATGAGTTATACTTCAGGCTA 59.013 37.037 0.00 0.00 0.00 3.93
2082 4631 7.449934 AGTCAACATTTCAATCGTTTTGTTC 57.550 32.000 0.00 0.00 0.00 3.18
2127 4676 5.469760 TCTTGAATTGACACGTCATGATGTT 59.530 36.000 18.05 9.73 39.64 2.71
2266 4815 7.875041 AGGAGACACATAGGAAATCGATAAATG 59.125 37.037 0.00 1.38 0.00 2.32
2303 4853 3.237268 ACATGGAGCCTGGTAAAAACA 57.763 42.857 0.00 0.00 0.00 2.83
2304 4854 3.778265 ACATGGAGCCTGGTAAAAACAT 58.222 40.909 0.00 0.00 0.00 2.71
2305 4855 4.159557 ACATGGAGCCTGGTAAAAACATT 58.840 39.130 0.00 0.00 0.00 2.71
2306 4856 5.329399 ACATGGAGCCTGGTAAAAACATTA 58.671 37.500 0.00 0.00 0.00 1.90
2307 4857 5.418840 ACATGGAGCCTGGTAAAAACATTAG 59.581 40.000 0.00 0.00 0.00 1.73
2308 4858 5.249780 TGGAGCCTGGTAAAAACATTAGA 57.750 39.130 0.00 0.00 0.00 2.10
2309 4859 5.253330 TGGAGCCTGGTAAAAACATTAGAG 58.747 41.667 0.00 0.00 0.00 2.43
2310 4860 5.013704 TGGAGCCTGGTAAAAACATTAGAGA 59.986 40.000 0.00 0.00 0.00 3.10
2311 4861 5.944007 GGAGCCTGGTAAAAACATTAGAGAA 59.056 40.000 0.00 0.00 0.00 2.87
2312 4862 6.433093 GGAGCCTGGTAAAAACATTAGAGAAA 59.567 38.462 0.00 0.00 0.00 2.52
2313 4863 7.039993 GGAGCCTGGTAAAAACATTAGAGAAAA 60.040 37.037 0.00 0.00 0.00 2.29
2314 4864 8.245195 AGCCTGGTAAAAACATTAGAGAAAAA 57.755 30.769 0.00 0.00 0.00 1.94
2315 4865 8.141909 AGCCTGGTAAAAACATTAGAGAAAAAC 58.858 33.333 0.00 0.00 0.00 2.43
2316 4866 7.923878 GCCTGGTAAAAACATTAGAGAAAAACA 59.076 33.333 0.00 0.00 0.00 2.83
2317 4867 9.463443 CCTGGTAAAAACATTAGAGAAAAACAG 57.537 33.333 0.00 0.00 0.00 3.16
2332 4882 8.966868 AGAGAAAAACAGTATTTTGAAACCTCA 58.033 29.630 0.00 0.00 32.85 3.86
2333 4883 9.581099 GAGAAAAACAGTATTTTGAAACCTCAA 57.419 29.630 0.00 0.00 39.87 3.02
2382 4932 8.884726 ACATATAGATGTGTAGTAGTATGAGCG 58.115 37.037 1.31 0.00 44.90 5.03
2383 4933 8.884726 CATATAGATGTGTAGTAGTATGAGCGT 58.115 37.037 0.00 0.00 0.00 5.07
2384 4934 5.425577 AGATGTGTAGTAGTATGAGCGTG 57.574 43.478 0.00 0.00 0.00 5.34
2385 4935 3.416119 TGTGTAGTAGTATGAGCGTGC 57.584 47.619 0.00 0.00 0.00 5.34
2386 4936 2.750712 TGTGTAGTAGTATGAGCGTGCA 59.249 45.455 0.00 0.00 0.00 4.57
2387 4937 3.191791 TGTGTAGTAGTATGAGCGTGCAA 59.808 43.478 0.00 0.00 0.00 4.08
2388 4938 4.171005 GTGTAGTAGTATGAGCGTGCAAA 58.829 43.478 0.00 0.00 0.00 3.68
2389 4939 4.031426 GTGTAGTAGTATGAGCGTGCAAAC 59.969 45.833 0.00 0.00 0.00 2.93
2390 4940 3.594603 AGTAGTATGAGCGTGCAAACT 57.405 42.857 0.00 0.00 0.00 2.66
2391 4941 3.926616 AGTAGTATGAGCGTGCAAACTT 58.073 40.909 0.00 0.00 0.00 2.66
2392 4942 3.927142 AGTAGTATGAGCGTGCAAACTTC 59.073 43.478 0.00 0.00 0.00 3.01
2393 4943 3.045601 AGTATGAGCGTGCAAACTTCT 57.954 42.857 0.00 0.00 0.00 2.85
2394 4944 4.188247 AGTATGAGCGTGCAAACTTCTA 57.812 40.909 0.00 0.00 0.00 2.10
2395 4945 4.759782 AGTATGAGCGTGCAAACTTCTAT 58.240 39.130 0.00 0.00 0.00 1.98
2396 4946 4.806247 AGTATGAGCGTGCAAACTTCTATC 59.194 41.667 0.00 0.00 0.00 2.08
2397 4947 3.038788 TGAGCGTGCAAACTTCTATCA 57.961 42.857 0.00 0.00 0.00 2.15
2398 4948 2.995939 TGAGCGTGCAAACTTCTATCAG 59.004 45.455 0.00 0.00 0.00 2.90
2399 4949 2.996621 GAGCGTGCAAACTTCTATCAGT 59.003 45.455 0.00 0.00 0.00 3.41
2400 4950 4.174009 GAGCGTGCAAACTTCTATCAGTA 58.826 43.478 0.00 0.00 0.00 2.74
2401 4951 3.927142 AGCGTGCAAACTTCTATCAGTAC 59.073 43.478 0.00 0.00 0.00 2.73
2402 4952 3.927142 GCGTGCAAACTTCTATCAGTACT 59.073 43.478 0.00 0.00 0.00 2.73
2403 4953 5.100259 GCGTGCAAACTTCTATCAGTACTA 58.900 41.667 0.00 0.00 0.00 1.82
2404 4954 5.230306 GCGTGCAAACTTCTATCAGTACTAG 59.770 44.000 0.00 0.00 0.00 2.57
2405 4955 5.230306 CGTGCAAACTTCTATCAGTACTAGC 59.770 44.000 0.00 0.00 0.00 3.42
2406 4956 6.100004 GTGCAAACTTCTATCAGTACTAGCA 58.900 40.000 0.00 0.00 0.00 3.49
2407 4957 6.590292 GTGCAAACTTCTATCAGTACTAGCAA 59.410 38.462 0.00 0.00 0.00 3.91
2408 4958 7.117812 GTGCAAACTTCTATCAGTACTAGCAAA 59.882 37.037 0.00 0.00 0.00 3.68
2409 4959 7.659799 TGCAAACTTCTATCAGTACTAGCAAAA 59.340 33.333 0.00 0.00 0.00 2.44
2410 4960 8.669243 GCAAACTTCTATCAGTACTAGCAAAAT 58.331 33.333 0.00 0.00 0.00 1.82
2411 4961 9.979270 CAAACTTCTATCAGTACTAGCAAAATG 57.021 33.333 0.00 0.00 0.00 2.32
2412 4962 8.723942 AACTTCTATCAGTACTAGCAAAATGG 57.276 34.615 0.00 0.00 0.00 3.16
2413 4963 6.763610 ACTTCTATCAGTACTAGCAAAATGGC 59.236 38.462 0.00 0.00 0.00 4.40
2414 4964 5.611374 TCTATCAGTACTAGCAAAATGGCC 58.389 41.667 0.00 0.00 0.00 5.36
2415 4965 2.999331 TCAGTACTAGCAAAATGGCCC 58.001 47.619 0.00 0.00 0.00 5.80
2416 4966 1.670811 CAGTACTAGCAAAATGGCCCG 59.329 52.381 0.00 0.00 0.00 6.13
2417 4967 1.280998 AGTACTAGCAAAATGGCCCGT 59.719 47.619 0.00 0.00 0.00 5.28
2418 4968 1.400494 GTACTAGCAAAATGGCCCGTG 59.600 52.381 0.00 0.00 0.00 4.94
2419 4969 1.139520 CTAGCAAAATGGCCCGTGC 59.860 57.895 0.00 4.43 37.26 5.34
2420 4970 2.597117 CTAGCAAAATGGCCCGTGCG 62.597 60.000 0.00 0.00 41.90 5.34
2421 4971 4.356442 GCAAAATGGCCCGTGCGT 62.356 61.111 0.00 0.00 38.85 5.24
2422 4972 2.338257 CAAAATGGCCCGTGCGTT 59.662 55.556 0.00 0.00 38.85 4.84
2423 4973 2.021039 CAAAATGGCCCGTGCGTTG 61.021 57.895 0.00 0.00 38.85 4.10
2424 4974 2.494530 AAAATGGCCCGTGCGTTGT 61.495 52.632 0.00 0.00 38.85 3.32
2425 4975 1.173444 AAAATGGCCCGTGCGTTGTA 61.173 50.000 0.00 0.00 38.85 2.41
2426 4976 1.173444 AAATGGCCCGTGCGTTGTAA 61.173 50.000 0.00 0.00 38.85 2.41
2427 4977 1.858372 AATGGCCCGTGCGTTGTAAC 61.858 55.000 0.00 0.00 38.85 2.50
2428 4978 2.973600 GGCCCGTGCGTTGTAACA 60.974 61.111 0.00 0.00 38.85 2.41
2429 4979 2.554272 GCCCGTGCGTTGTAACAG 59.446 61.111 0.00 0.00 0.00 3.16
2430 4980 2.961669 GCCCGTGCGTTGTAACAGG 61.962 63.158 0.00 0.00 0.00 4.00
2431 4981 1.301087 CCCGTGCGTTGTAACAGGA 60.301 57.895 0.00 0.00 0.00 3.86
2432 4982 1.289109 CCCGTGCGTTGTAACAGGAG 61.289 60.000 0.00 0.00 0.00 3.69
2433 4983 0.319211 CCGTGCGTTGTAACAGGAGA 60.319 55.000 0.00 0.00 0.00 3.71
2434 4984 1.671850 CCGTGCGTTGTAACAGGAGAT 60.672 52.381 0.00 0.00 0.00 2.75
2435 4985 2.066262 CGTGCGTTGTAACAGGAGATT 58.934 47.619 0.00 0.00 0.00 2.40
2436 4986 2.478894 CGTGCGTTGTAACAGGAGATTT 59.521 45.455 0.00 0.00 0.00 2.17
2437 4987 3.059188 CGTGCGTTGTAACAGGAGATTTT 60.059 43.478 0.00 0.00 0.00 1.82
2438 4988 4.553938 CGTGCGTTGTAACAGGAGATTTTT 60.554 41.667 0.00 0.00 0.00 1.94
2462 5012 7.421087 TTTTCATAATCTTCAATGGCCATGA 57.579 32.000 21.63 15.91 0.00 3.07
2463 5013 6.395426 TTCATAATCTTCAATGGCCATGAC 57.605 37.500 21.63 0.00 0.00 3.06
2464 5014 4.828939 TCATAATCTTCAATGGCCATGACC 59.171 41.667 21.63 0.00 0.00 4.02
2465 5015 2.832643 ATCTTCAATGGCCATGACCA 57.167 45.000 21.63 2.13 45.82 4.02
2466 5016 1.838112 TCTTCAATGGCCATGACCAC 58.162 50.000 21.63 0.00 44.17 4.16
2467 5017 1.075212 TCTTCAATGGCCATGACCACA 59.925 47.619 21.63 0.00 44.17 4.17
2468 5018 2.104967 CTTCAATGGCCATGACCACAT 58.895 47.619 21.63 0.00 44.17 3.21
2469 5019 2.234896 TCAATGGCCATGACCACATT 57.765 45.000 21.63 0.00 44.17 2.71
2470 5020 2.538222 TCAATGGCCATGACCACATTT 58.462 42.857 21.63 0.00 44.17 2.32
2471 5021 2.905085 TCAATGGCCATGACCACATTTT 59.095 40.909 21.63 0.00 44.17 1.82
2472 5022 3.004171 CAATGGCCATGACCACATTTTG 58.996 45.455 21.63 6.49 44.17 2.44
2473 5023 0.321021 TGGCCATGACCACATTTTGC 59.679 50.000 0.00 0.00 33.75 3.68
2474 5024 0.609662 GGCCATGACCACATTTTGCT 59.390 50.000 0.00 0.00 34.15 3.91
2475 5025 1.673626 GGCCATGACCACATTTTGCTG 60.674 52.381 0.00 0.00 34.15 4.41
2476 5026 1.717194 CCATGACCACATTTTGCTGC 58.283 50.000 0.00 0.00 34.15 5.25
2477 5027 1.001068 CCATGACCACATTTTGCTGCA 59.999 47.619 0.00 0.00 34.15 4.41
2478 5028 2.354303 CCATGACCACATTTTGCTGCAT 60.354 45.455 1.84 0.00 34.15 3.96
2479 5029 2.728690 TGACCACATTTTGCTGCATC 57.271 45.000 1.84 0.00 0.00 3.91
2480 5030 1.962100 TGACCACATTTTGCTGCATCA 59.038 42.857 1.84 0.00 0.00 3.07
2481 5031 2.288334 TGACCACATTTTGCTGCATCAC 60.288 45.455 1.84 0.00 0.00 3.06
2482 5032 1.001181 ACCACATTTTGCTGCATCACC 59.999 47.619 1.84 0.00 0.00 4.02
2483 5033 1.001068 CCACATTTTGCTGCATCACCA 59.999 47.619 1.84 0.00 0.00 4.17
2484 5034 2.548280 CCACATTTTGCTGCATCACCAA 60.548 45.455 1.84 0.00 0.00 3.67
2485 5035 2.734606 CACATTTTGCTGCATCACCAAG 59.265 45.455 1.84 0.00 0.00 3.61
2486 5036 2.629137 ACATTTTGCTGCATCACCAAGA 59.371 40.909 1.84 0.00 0.00 3.02
2487 5037 3.259876 ACATTTTGCTGCATCACCAAGAT 59.740 39.130 1.84 0.00 37.48 2.40
2488 5038 4.463539 ACATTTTGCTGCATCACCAAGATA 59.536 37.500 1.84 0.00 34.43 1.98
2489 5039 4.439305 TTTTGCTGCATCACCAAGATAC 57.561 40.909 1.84 0.00 34.43 2.24
2490 5040 3.354948 TTGCTGCATCACCAAGATACT 57.645 42.857 1.84 0.00 34.43 2.12
2491 5041 4.486125 TTGCTGCATCACCAAGATACTA 57.514 40.909 1.84 0.00 34.43 1.82
2492 5042 3.797039 TGCTGCATCACCAAGATACTAC 58.203 45.455 0.00 0.00 34.43 2.73
2493 5043 3.452264 TGCTGCATCACCAAGATACTACT 59.548 43.478 0.00 0.00 34.43 2.57
2494 5044 4.080919 TGCTGCATCACCAAGATACTACTT 60.081 41.667 0.00 0.00 34.43 2.24
2495 5045 4.509600 GCTGCATCACCAAGATACTACTTC 59.490 45.833 0.00 0.00 34.43 3.01
2496 5046 5.683509 GCTGCATCACCAAGATACTACTTCT 60.684 44.000 0.00 0.00 34.43 2.85
2497 5047 6.299805 TGCATCACCAAGATACTACTTCTT 57.700 37.500 0.00 0.00 34.43 2.52
2498 5048 7.418337 TGCATCACCAAGATACTACTTCTTA 57.582 36.000 0.00 0.00 34.43 2.10
2499 5049 8.023021 TGCATCACCAAGATACTACTTCTTAT 57.977 34.615 0.00 0.00 34.43 1.73
2500 5050 8.486210 TGCATCACCAAGATACTACTTCTTATT 58.514 33.333 0.00 0.00 34.43 1.40
2501 5051 9.331282 GCATCACCAAGATACTACTTCTTATTT 57.669 33.333 0.00 0.00 34.43 1.40
2504 5054 9.886132 TCACCAAGATACTACTTCTTATTTTCC 57.114 33.333 0.00 0.00 32.27 3.13
2505 5055 9.892130 CACCAAGATACTACTTCTTATTTTCCT 57.108 33.333 0.00 0.00 32.27 3.36
2506 5056 9.892130 ACCAAGATACTACTTCTTATTTTCCTG 57.108 33.333 0.00 0.00 32.27 3.86
2514 5064 8.936864 ACTACTTCTTATTTTCCTGAAATCGTG 58.063 33.333 0.00 0.00 38.80 4.35
2515 5065 7.979444 ACTTCTTATTTTCCTGAAATCGTGA 57.021 32.000 0.00 0.00 38.80 4.35
2516 5066 8.567285 ACTTCTTATTTTCCTGAAATCGTGAT 57.433 30.769 0.00 0.00 38.80 3.06
2517 5067 9.014297 ACTTCTTATTTTCCTGAAATCGTGATT 57.986 29.630 0.00 0.00 38.80 2.57
2518 5068 9.846248 CTTCTTATTTTCCTGAAATCGTGATTT 57.154 29.630 7.52 7.52 43.14 2.17
2571 5121 9.599866 AACTTATGAACATATCAGAAATCGTGA 57.400 29.630 0.00 0.00 42.53 4.35
2572 5122 9.599866 ACTTATGAACATATCAGAAATCGTGAA 57.400 29.630 0.00 0.00 42.53 3.18
2573 5123 9.855361 CTTATGAACATATCAGAAATCGTGAAC 57.145 33.333 0.00 0.00 42.53 3.18
2574 5124 7.848223 ATGAACATATCAGAAATCGTGAACA 57.152 32.000 0.00 0.00 42.53 3.18
2575 5125 7.848223 TGAACATATCAGAAATCGTGAACAT 57.152 32.000 0.00 0.00 33.04 2.71
2576 5126 8.267620 TGAACATATCAGAAATCGTGAACATT 57.732 30.769 0.00 0.00 33.04 2.71
2577 5127 8.729756 TGAACATATCAGAAATCGTGAACATTT 58.270 29.630 0.00 0.00 33.04 2.32
2578 5128 9.559958 GAACATATCAGAAATCGTGAACATTTT 57.440 29.630 0.00 0.00 0.00 1.82
2579 5129 9.912634 AACATATCAGAAATCGTGAACATTTTT 57.087 25.926 0.00 0.00 0.00 1.94
2580 5130 9.559958 ACATATCAGAAATCGTGAACATTTTTC 57.440 29.630 0.00 0.00 0.00 2.29
2581 5131 9.558648 CATATCAGAAATCGTGAACATTTTTCA 57.441 29.630 0.00 0.00 0.00 2.69
2583 5133 8.870160 ATCAGAAATCGTGAACATTTTTCAAA 57.130 26.923 0.00 0.00 0.00 2.69
2584 5134 8.870160 TCAGAAATCGTGAACATTTTTCAAAT 57.130 26.923 0.00 0.00 0.00 2.32
2585 5135 9.311916 TCAGAAATCGTGAACATTTTTCAAATT 57.688 25.926 0.00 0.00 0.00 1.82
2586 5136 9.571804 CAGAAATCGTGAACATTTTTCAAATTC 57.428 29.630 0.00 0.00 0.00 2.17
2587 5137 9.311916 AGAAATCGTGAACATTTTTCAAATTCA 57.688 25.926 0.00 0.00 0.00 2.57
2589 5139 9.866936 AAATCGTGAACATTTTTCAAATTCATG 57.133 25.926 0.00 0.00 37.55 3.07
2590 5140 8.815141 ATCGTGAACATTTTTCAAATTCATGA 57.185 26.923 8.04 8.04 44.87 3.07
2591 5141 8.640091 TCGTGAACATTTTTCAAATTCATGAA 57.360 26.923 11.26 11.26 40.55 2.57
2592 5142 8.538856 TCGTGAACATTTTTCAAATTCATGAAC 58.461 29.630 11.07 0.00 40.55 3.18
2593 5143 8.326713 CGTGAACATTTTTCAAATTCATGAACA 58.673 29.630 11.07 0.00 38.95 3.18
2686 5236 8.954950 TTTTTGAATAGGCAAACATTTCAAGA 57.045 26.923 0.00 0.00 37.53 3.02
2687 5237 8.954950 TTTTGAATAGGCAAACATTTCAAGAA 57.045 26.923 0.00 0.00 37.53 2.52
2688 5238 9.558396 TTTTGAATAGGCAAACATTTCAAGAAT 57.442 25.926 0.00 0.00 37.53 2.40
2689 5239 8.761575 TTGAATAGGCAAACATTTCAAGAATC 57.238 30.769 0.00 0.00 32.88 2.52
2690 5240 7.322664 TGAATAGGCAAACATTTCAAGAATCC 58.677 34.615 0.00 0.00 0.00 3.01
2691 5241 6.855763 ATAGGCAAACATTTCAAGAATCCA 57.144 33.333 0.00 0.00 0.00 3.41
2692 5242 5.750352 AGGCAAACATTTCAAGAATCCAT 57.250 34.783 0.00 0.00 0.00 3.41
2693 5243 5.484715 AGGCAAACATTTCAAGAATCCATG 58.515 37.500 0.00 0.00 0.00 3.66
2694 5244 5.246656 AGGCAAACATTTCAAGAATCCATGA 59.753 36.000 0.00 0.00 0.00 3.07
2695 5245 5.933463 GGCAAACATTTCAAGAATCCATGAA 59.067 36.000 0.00 0.00 33.93 2.57
2696 5246 6.128472 GGCAAACATTTCAAGAATCCATGAAC 60.128 38.462 0.00 0.00 35.42 3.18
2697 5247 6.424509 GCAAACATTTCAAGAATCCATGAACA 59.575 34.615 0.00 0.00 35.42 3.18
2698 5248 7.118680 GCAAACATTTCAAGAATCCATGAACAT 59.881 33.333 0.00 0.00 35.42 2.71
2699 5249 8.995220 CAAACATTTCAAGAATCCATGAACATT 58.005 29.630 0.00 0.00 35.42 2.71
2700 5250 9.563748 AAACATTTCAAGAATCCATGAACATTT 57.436 25.926 0.00 0.00 35.42 2.32
2701 5251 9.563748 AACATTTCAAGAATCCATGAACATTTT 57.436 25.926 0.00 0.00 35.42 1.82
2702 5252 9.563748 ACATTTCAAGAATCCATGAACATTTTT 57.436 25.926 0.00 0.00 35.42 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.239551 ACCACATACGTATGTACATAGACATAT 57.760 33.333 34.24 10.22 44.57 1.78
14 15 8.625786 ACCACATACGTATGTACATAGACATA 57.374 34.615 34.24 1.51 44.57 2.29
15 16 7.520451 ACCACATACGTATGTACATAGACAT 57.480 36.000 34.24 10.89 44.57 3.06
16 17 6.947644 ACCACATACGTATGTACATAGACA 57.052 37.500 34.24 4.48 44.57 3.41
17 18 8.092521 ACTACCACATACGTATGTACATAGAC 57.907 38.462 33.31 7.23 44.57 2.59
18 19 8.152898 AGACTACCACATACGTATGTACATAGA 58.847 37.037 33.31 21.11 44.57 1.98
19 20 8.320396 AGACTACCACATACGTATGTACATAG 57.680 38.462 34.24 31.28 44.57 2.23
20 21 9.948964 ATAGACTACCACATACGTATGTACATA 57.051 33.333 34.24 24.76 44.57 2.29
21 22 8.859236 ATAGACTACCACATACGTATGTACAT 57.141 34.615 34.24 24.94 44.57 2.29
22 23 8.681486 AATAGACTACCACATACGTATGTACA 57.319 34.615 34.24 22.37 44.57 2.90
23 24 9.390795 CAAATAGACTACCACATACGTATGTAC 57.609 37.037 34.24 21.59 44.57 2.90
24 25 9.341078 TCAAATAGACTACCACATACGTATGTA 57.659 33.333 34.24 21.38 44.57 2.29
26 27 9.524106 TTTCAAATAGACTACCACATACGTATG 57.476 33.333 29.48 29.48 39.55 2.39
28 29 9.524106 CATTTCAAATAGACTACCACATACGTA 57.476 33.333 0.00 0.00 0.00 3.57
29 30 8.038944 ACATTTCAAATAGACTACCACATACGT 58.961 33.333 0.00 0.00 0.00 3.57
30 31 8.420374 ACATTTCAAATAGACTACCACATACG 57.580 34.615 0.00 0.00 0.00 3.06
61 62 9.916360 ACTCCCTCCGTTTTTAAATATTTATCT 57.084 29.630 8.70 0.00 0.00 1.98
64 65 9.956640 TGTACTCCCTCCGTTTTTAAATATTTA 57.043 29.630 3.71 3.71 0.00 1.40
65 66 8.866970 TGTACTCCCTCCGTTTTTAAATATTT 57.133 30.769 5.89 5.89 0.00 1.40
66 67 8.899771 CATGTACTCCCTCCGTTTTTAAATATT 58.100 33.333 0.00 0.00 0.00 1.28
67 68 8.269317 TCATGTACTCCCTCCGTTTTTAAATAT 58.731 33.333 0.00 0.00 0.00 1.28
68 69 7.622713 TCATGTACTCCCTCCGTTTTTAAATA 58.377 34.615 0.00 0.00 0.00 1.40
69 70 6.478129 TCATGTACTCCCTCCGTTTTTAAAT 58.522 36.000 0.00 0.00 0.00 1.40
70 71 5.867330 TCATGTACTCCCTCCGTTTTTAAA 58.133 37.500 0.00 0.00 0.00 1.52
71 72 5.246656 TCTCATGTACTCCCTCCGTTTTTAA 59.753 40.000 0.00 0.00 0.00 1.52
72 73 4.773674 TCTCATGTACTCCCTCCGTTTTTA 59.226 41.667 0.00 0.00 0.00 1.52
73 74 3.581332 TCTCATGTACTCCCTCCGTTTTT 59.419 43.478 0.00 0.00 0.00 1.94
74 75 3.170717 TCTCATGTACTCCCTCCGTTTT 58.829 45.455 0.00 0.00 0.00 2.43
75 76 2.816411 TCTCATGTACTCCCTCCGTTT 58.184 47.619 0.00 0.00 0.00 3.60
76 77 2.526888 TCTCATGTACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
77 78 2.311463 CATCTCATGTACTCCCTCCGT 58.689 52.381 0.00 0.00 0.00 4.69
78 79 1.000283 GCATCTCATGTACTCCCTCCG 60.000 57.143 0.00 0.00 0.00 4.63
79 80 1.000283 CGCATCTCATGTACTCCCTCC 60.000 57.143 0.00 0.00 0.00 4.30
80 81 1.604185 GCGCATCTCATGTACTCCCTC 60.604 57.143 0.30 0.00 0.00 4.30
81 82 0.390860 GCGCATCTCATGTACTCCCT 59.609 55.000 0.30 0.00 0.00 4.20
125 133 0.459585 TCGACCGCCAGAATAGCAAC 60.460 55.000 0.00 0.00 0.00 4.17
127 135 0.032130 GATCGACCGCCAGAATAGCA 59.968 55.000 0.00 0.00 0.00 3.49
128 136 0.032130 TGATCGACCGCCAGAATAGC 59.968 55.000 0.00 0.00 0.00 2.97
129 137 1.932604 GCTGATCGACCGCCAGAATAG 60.933 57.143 12.98 0.00 0.00 1.73
130 138 0.032130 GCTGATCGACCGCCAGAATA 59.968 55.000 12.98 0.00 0.00 1.75
131 139 1.227380 GCTGATCGACCGCCAGAAT 60.227 57.895 12.98 0.00 0.00 2.40
132 140 1.960040 ATGCTGATCGACCGCCAGAA 61.960 55.000 12.98 5.64 0.00 3.02
133 141 2.426406 ATGCTGATCGACCGCCAGA 61.426 57.895 12.98 2.96 0.00 3.86
134 142 2.107750 ATGCTGATCGACCGCCAG 59.892 61.111 0.00 0.00 0.00 4.85
135 143 2.031674 ATCATGCTGATCGACCGCCA 62.032 55.000 0.00 0.00 29.59 5.69
136 144 1.287730 GATCATGCTGATCGACCGCC 61.288 60.000 9.44 0.00 43.11 6.13
137 145 2.148687 GATCATGCTGATCGACCGC 58.851 57.895 9.44 0.00 43.11 5.68
144 152 5.128827 AGCAATTTGGAAAGATCATGCTGAT 59.871 36.000 0.00 0.00 41.01 2.90
148 156 3.308866 GCAGCAATTTGGAAAGATCATGC 59.691 43.478 0.00 0.00 0.00 4.06
161 169 5.992829 TCATCAAAAATCACAGCAGCAATTT 59.007 32.000 0.00 0.00 0.00 1.82
241 249 4.363138 TCACGAGCTATGCAATTAGACTG 58.637 43.478 0.00 0.00 0.00 3.51
244 252 5.459536 AGATCACGAGCTATGCAATTAGA 57.540 39.130 0.00 0.00 0.00 2.10
253 261 4.636648 CCGATTACCTAGATCACGAGCTAT 59.363 45.833 0.00 0.00 0.00 2.97
258 266 1.884579 GCCCGATTACCTAGATCACGA 59.115 52.381 0.00 0.00 0.00 4.35
265 273 2.607282 CGCACTTAGCCCGATTACCTAG 60.607 54.545 0.00 0.00 41.38 3.02
269 277 0.878961 CCCGCACTTAGCCCGATTAC 60.879 60.000 0.00 0.00 41.38 1.89
275 283 2.033602 ACAACCCGCACTTAGCCC 59.966 61.111 0.00 0.00 41.38 5.19
289 299 2.967745 TTCATCCACCCATCACACAA 57.032 45.000 0.00 0.00 0.00 3.33
322 332 7.789273 TCGGTTACAAGAAGTGAAACAATTA 57.211 32.000 0.00 0.00 41.43 1.40
470 786 2.103373 TCACATCCTTCTTCCTCCTCG 58.897 52.381 0.00 0.00 0.00 4.63
499 819 9.335891 CGTAGCTATCTCAGTTGATAACTTATG 57.664 37.037 0.00 0.00 40.46 1.90
504 824 6.496571 ACACGTAGCTATCTCAGTTGATAAC 58.503 40.000 0.00 0.00 0.00 1.89
540 860 5.009510 TCAATGATGATGTGACGTGGTTTTT 59.990 36.000 0.00 0.00 0.00 1.94
575 895 1.754226 CCTTCTTTCTCCTCCCTCTCG 59.246 57.143 0.00 0.00 0.00 4.04
585 905 2.358267 CCATGCTGCATCCTTCTTTCTC 59.642 50.000 13.10 0.00 0.00 2.87
587 907 1.202382 GCCATGCTGCATCCTTCTTTC 60.202 52.381 13.10 0.00 0.00 2.62
589 909 0.033405 AGCCATGCTGCATCCTTCTT 60.033 50.000 13.10 0.00 37.57 2.52
590 910 1.613610 AGCCATGCTGCATCCTTCT 59.386 52.632 13.10 4.55 37.57 2.85
591 911 4.254721 AGCCATGCTGCATCCTTC 57.745 55.556 13.10 2.24 37.57 3.46
600 920 2.233566 TCCCAAGACCAGCCATGCT 61.234 57.895 0.00 0.00 40.77 3.79
601 921 2.048603 GTCCCAAGACCAGCCATGC 61.049 63.158 0.00 0.00 37.00 4.06
612 932 4.574421 GTCCATTTTTGTTTTGGTCCCAAG 59.426 41.667 0.00 0.00 37.24 3.61
613 933 4.226168 AGTCCATTTTTGTTTTGGTCCCAA 59.774 37.500 0.00 0.00 0.00 4.12
614 934 3.777522 AGTCCATTTTTGTTTTGGTCCCA 59.222 39.130 0.00 0.00 0.00 4.37
642 980 5.044558 GTCCATTTTTGTTACCTCGCAAAA 58.955 37.500 0.00 0.00 41.15 2.44
643 981 4.339814 AGTCCATTTTTGTTACCTCGCAAA 59.660 37.500 0.00 0.00 33.40 3.68
644 982 3.886505 AGTCCATTTTTGTTACCTCGCAA 59.113 39.130 0.00 0.00 0.00 4.85
645 983 3.482436 AGTCCATTTTTGTTACCTCGCA 58.518 40.909 0.00 0.00 0.00 5.10
646 984 3.119955 GGAGTCCATTTTTGTTACCTCGC 60.120 47.826 3.60 0.00 0.00 5.03
647 985 3.439129 GGGAGTCCATTTTTGTTACCTCG 59.561 47.826 12.30 0.00 0.00 4.63
648 986 3.762288 GGGGAGTCCATTTTTGTTACCTC 59.238 47.826 12.30 0.00 35.00 3.85
649 987 3.401342 AGGGGAGTCCATTTTTGTTACCT 59.599 43.478 12.30 0.73 38.24 3.08
650 988 3.774734 AGGGGAGTCCATTTTTGTTACC 58.225 45.455 12.30 0.00 38.24 2.85
651 989 5.801531 AAAGGGGAGTCCATTTTTGTTAC 57.198 39.130 12.30 0.00 43.64 2.50
652 990 9.777008 ATATTAAAGGGGAGTCCATTTTTGTTA 57.223 29.630 12.30 5.36 43.64 2.41
653 991 8.679344 ATATTAAAGGGGAGTCCATTTTTGTT 57.321 30.769 12.30 3.55 43.64 2.83
654 992 8.122481 AGATATTAAAGGGGAGTCCATTTTTGT 58.878 33.333 12.30 5.80 43.64 2.83
655 993 8.539117 AGATATTAAAGGGGAGTCCATTTTTG 57.461 34.615 12.30 0.00 43.64 2.44
656 994 9.642343 GTAGATATTAAAGGGGAGTCCATTTTT 57.358 33.333 12.30 10.27 43.64 1.94
657 995 7.937394 CGTAGATATTAAAGGGGAGTCCATTTT 59.063 37.037 12.30 12.69 43.64 1.82
659 997 6.557633 ACGTAGATATTAAAGGGGAGTCCATT 59.442 38.462 12.30 5.45 38.92 3.16
660 998 6.082707 ACGTAGATATTAAAGGGGAGTCCAT 58.917 40.000 12.30 0.00 38.24 3.41
661 999 5.461327 ACGTAGATATTAAAGGGGAGTCCA 58.539 41.667 12.30 0.00 38.24 4.02
662 1000 6.718912 AGTACGTAGATATTAAAGGGGAGTCC 59.281 42.308 0.00 0.00 0.00 3.85
663 1001 7.309073 CCAGTACGTAGATATTAAAGGGGAGTC 60.309 44.444 0.00 0.00 0.00 3.36
664 1002 6.492772 CCAGTACGTAGATATTAAAGGGGAGT 59.507 42.308 0.00 0.00 0.00 3.85
665 1003 6.718454 TCCAGTACGTAGATATTAAAGGGGAG 59.282 42.308 0.00 0.00 0.00 4.30
666 1004 6.613699 TCCAGTACGTAGATATTAAAGGGGA 58.386 40.000 0.00 0.00 0.00 4.81
669 1007 6.978338 TGCTCCAGTACGTAGATATTAAAGG 58.022 40.000 0.00 0.00 0.00 3.11
679 1017 2.961526 AACCATGCTCCAGTACGTAG 57.038 50.000 0.00 0.00 0.00 3.51
680 1018 3.359033 ACTAACCATGCTCCAGTACGTA 58.641 45.455 0.00 0.00 0.00 3.57
681 1019 2.176889 ACTAACCATGCTCCAGTACGT 58.823 47.619 0.00 0.00 0.00 3.57
683 1021 4.202245 TGAACTAACCATGCTCCAGTAC 57.798 45.455 0.00 0.00 0.00 2.73
693 1291 2.642427 TCGCATGCATGAACTAACCAT 58.358 42.857 30.64 0.00 0.00 3.55
696 1294 3.680642 ACATCGCATGCATGAACTAAC 57.319 42.857 30.64 10.15 0.00 2.34
698 1296 2.223317 GCAACATCGCATGCATGAACTA 60.223 45.455 30.64 11.61 42.12 2.24
722 1320 0.388659 TGTGCATGCCAAGTTTGACC 59.611 50.000 16.68 0.00 0.00 4.02
723 1321 1.860326 GTTGTGCATGCCAAGTTTGAC 59.140 47.619 16.68 4.29 0.00 3.18
747 1345 5.886474 TCTAGTTGAGGAGACATACGTTCAT 59.114 40.000 0.00 0.00 0.00 2.57
748 1346 5.123502 GTCTAGTTGAGGAGACATACGTTCA 59.876 44.000 0.00 0.00 41.49 3.18
749 1347 5.354792 AGTCTAGTTGAGGAGACATACGTTC 59.645 44.000 0.00 0.00 43.81 3.95
750 1348 5.254901 AGTCTAGTTGAGGAGACATACGTT 58.745 41.667 0.00 0.00 43.81 3.99
751 1349 4.846040 AGTCTAGTTGAGGAGACATACGT 58.154 43.478 4.96 0.00 43.81 3.57
752 1350 4.025563 CGAGTCTAGTTGAGGAGACATACG 60.026 50.000 4.96 4.11 43.81 3.06
753 1351 4.260866 GCGAGTCTAGTTGAGGAGACATAC 60.261 50.000 4.96 0.00 43.81 2.39
754 1352 3.878103 GCGAGTCTAGTTGAGGAGACATA 59.122 47.826 4.96 0.00 43.81 2.29
755 1353 2.685897 GCGAGTCTAGTTGAGGAGACAT 59.314 50.000 4.96 0.00 43.81 3.06
773 1371 0.741927 CAGGAGACATGCATGTGCGA 60.742 55.000 35.92 0.00 45.83 5.10
802 1400 3.963428 AATGCGAGAGTGGACTAGTTT 57.037 42.857 0.00 0.00 0.00 2.66
927 1536 0.111061 AGTTCAACATGCAGGCTCCA 59.889 50.000 0.00 0.00 0.00 3.86
952 1594 6.347240 CGCAAGCTTATTTATAGGCAGAGAAG 60.347 42.308 0.00 0.00 37.77 2.85
992 1634 1.326213 CGGAGCTGGTCTGGTGAGAT 61.326 60.000 7.79 0.00 0.00 2.75
1001 1643 2.605823 CGAGATTGTATCGGAGCTGGTC 60.606 54.545 0.00 0.00 36.54 4.02
1022 1664 8.127327 TGTAATCTTAGTCGAGCACTGTATTAC 58.873 37.037 0.00 0.00 36.70 1.89
1033 1675 5.049612 TCCACGCTATGTAATCTTAGTCGAG 60.050 44.000 0.00 0.00 32.02 4.04
1044 1686 2.693591 CCCTCTTCTCCACGCTATGTAA 59.306 50.000 0.00 0.00 0.00 2.41
1045 1687 2.307768 CCCTCTTCTCCACGCTATGTA 58.692 52.381 0.00 0.00 0.00 2.29
1087 1729 0.034896 GAGGAGCGAACCCTTGAACA 59.965 55.000 0.00 0.00 33.36 3.18
1100 1742 1.515304 GAGAGCGAACACGAGGAGC 60.515 63.158 0.00 0.00 0.00 4.70
1112 1754 3.497932 GCAGCAAGCAGGAGAGCG 61.498 66.667 0.00 0.00 44.79 5.03
1165 1807 6.147492 GGAGTAGATAGTAGTGTATGGTGTCG 59.853 46.154 0.00 0.00 0.00 4.35
1168 1810 6.999272 ACTGGAGTAGATAGTAGTGTATGGTG 59.001 42.308 0.00 0.00 0.00 4.17
1174 1816 8.418597 TTCAAAACTGGAGTAGATAGTAGTGT 57.581 34.615 0.00 0.00 0.00 3.55
1178 1820 8.515695 TCGATTCAAAACTGGAGTAGATAGTA 57.484 34.615 0.00 0.00 0.00 1.82
1183 1825 7.158697 TCAAATCGATTCAAAACTGGAGTAGA 58.841 34.615 11.83 0.00 0.00 2.59
1187 1829 6.917477 TGTTTCAAATCGATTCAAAACTGGAG 59.083 34.615 29.26 9.22 31.15 3.86
1188 1830 6.800543 TGTTTCAAATCGATTCAAAACTGGA 58.199 32.000 29.26 17.71 31.15 3.86
1189 1831 7.462109 TTGTTTCAAATCGATTCAAAACTGG 57.538 32.000 29.26 10.78 31.15 4.00
1190 1832 9.919348 AATTTGTTTCAAATCGATTCAAAACTG 57.081 25.926 29.26 18.29 33.47 3.16
1220 1862 7.559533 TGCATCAACCCATAATTAACACTGTAT 59.440 33.333 0.00 0.00 0.00 2.29
1228 1870 4.584325 GCCTCTGCATCAACCCATAATTAA 59.416 41.667 0.00 0.00 37.47 1.40
1229 1871 4.144297 GCCTCTGCATCAACCCATAATTA 58.856 43.478 0.00 0.00 37.47 1.40
1230 1872 2.961062 GCCTCTGCATCAACCCATAATT 59.039 45.455 0.00 0.00 37.47 1.40
1231 1873 2.590821 GCCTCTGCATCAACCCATAAT 58.409 47.619 0.00 0.00 37.47 1.28
1596 2250 0.036732 TGCAAGAACACAGGGCTAGG 59.963 55.000 0.00 0.00 0.00 3.02
1681 2344 0.107606 ACACAACACGGGTGCAGTAA 60.108 50.000 0.00 0.00 39.87 2.24
1748 2417 6.131264 TCAGCTGGTGGATGAATTGATTAAT 58.869 36.000 15.13 0.00 37.41 1.40
1767 2436 6.678568 AGGCACTATTTATGAGTATCAGCT 57.321 37.500 0.00 0.00 45.82 4.24
1857 2531 0.460109 CACGCACAGGCACTAGCATA 60.460 55.000 0.00 0.00 44.61 3.14
1887 2566 1.090625 AACTAAACCGCACGCACACA 61.091 50.000 0.00 0.00 0.00 3.72
1894 2573 2.286025 AGACGTTGAAACTAAACCGCAC 59.714 45.455 0.00 0.00 0.00 5.34
1912 2591 0.752054 CCCTCTCCATCAGCAGAGAC 59.248 60.000 0.00 0.00 38.85 3.36
1927 2606 0.586802 GTTCAAGCACGTTCACCCTC 59.413 55.000 0.00 0.00 0.00 4.30
1961 2640 9.165035 CTTTTGGTATTTCAATATGCATTGGTT 57.835 29.630 3.54 0.00 41.66 3.67
1962 2641 8.538701 TCTTTTGGTATTTCAATATGCATTGGT 58.461 29.630 3.54 0.00 41.66 3.67
1963 2642 8.945481 TCTTTTGGTATTTCAATATGCATTGG 57.055 30.769 3.54 0.00 41.66 3.16
1966 2645 9.976511 CTCATCTTTTGGTATTTCAATATGCAT 57.023 29.630 3.79 3.79 0.00 3.96
2007 4507 1.690219 CCTTCTGGGCGTATGAGGCT 61.690 60.000 0.00 0.00 36.85 4.58
2266 4815 1.234615 TGTAAGCTGGCTCCGTTTGC 61.235 55.000 0.00 0.00 0.00 3.68
2306 4856 8.966868 TGAGGTTTCAAAATACTGTTTTTCTCT 58.033 29.630 0.00 0.00 0.00 3.10
2307 4857 9.581099 TTGAGGTTTCAAAATACTGTTTTTCTC 57.419 29.630 0.00 0.49 40.26 2.87
2357 4907 8.884726 ACGCTCATACTACTACACATCTATATG 58.115 37.037 0.00 0.00 39.17 1.78
2358 4908 8.884726 CACGCTCATACTACTACACATCTATAT 58.115 37.037 0.00 0.00 0.00 0.86
2359 4909 7.148457 GCACGCTCATACTACTACACATCTATA 60.148 40.741 0.00 0.00 0.00 1.31
2360 4910 6.348622 GCACGCTCATACTACTACACATCTAT 60.349 42.308 0.00 0.00 0.00 1.98
2361 4911 5.049612 GCACGCTCATACTACTACACATCTA 60.050 44.000 0.00 0.00 0.00 1.98
2362 4912 4.261238 GCACGCTCATACTACTACACATCT 60.261 45.833 0.00 0.00 0.00 2.90
2363 4913 3.975670 GCACGCTCATACTACTACACATC 59.024 47.826 0.00 0.00 0.00 3.06
2364 4914 3.380320 TGCACGCTCATACTACTACACAT 59.620 43.478 0.00 0.00 0.00 3.21
2365 4915 2.750712 TGCACGCTCATACTACTACACA 59.249 45.455 0.00 0.00 0.00 3.72
2366 4916 3.416119 TGCACGCTCATACTACTACAC 57.584 47.619 0.00 0.00 0.00 2.90
2367 4917 4.082408 AGTTTGCACGCTCATACTACTACA 60.082 41.667 0.00 0.00 0.00 2.74
2368 4918 4.421948 AGTTTGCACGCTCATACTACTAC 58.578 43.478 0.00 0.00 0.00 2.73
2369 4919 4.713824 AGTTTGCACGCTCATACTACTA 57.286 40.909 0.00 0.00 0.00 1.82
2370 4920 3.594603 AGTTTGCACGCTCATACTACT 57.405 42.857 0.00 0.00 0.00 2.57
2371 4921 3.927142 AGAAGTTTGCACGCTCATACTAC 59.073 43.478 0.00 0.00 30.07 2.73
2372 4922 4.188247 AGAAGTTTGCACGCTCATACTA 57.812 40.909 0.00 0.00 30.07 1.82
2373 4923 3.045601 AGAAGTTTGCACGCTCATACT 57.954 42.857 0.00 0.00 31.19 2.12
2374 4924 4.566759 TGATAGAAGTTTGCACGCTCATAC 59.433 41.667 0.00 0.00 0.00 2.39
2375 4925 4.754322 TGATAGAAGTTTGCACGCTCATA 58.246 39.130 0.00 0.00 0.00 2.15
2376 4926 3.599343 TGATAGAAGTTTGCACGCTCAT 58.401 40.909 0.00 0.00 0.00 2.90
2377 4927 2.995939 CTGATAGAAGTTTGCACGCTCA 59.004 45.455 0.00 0.00 0.00 4.26
2378 4928 2.996621 ACTGATAGAAGTTTGCACGCTC 59.003 45.455 0.00 0.00 0.00 5.03
2379 4929 3.045601 ACTGATAGAAGTTTGCACGCT 57.954 42.857 0.00 0.00 0.00 5.07
2380 4930 3.927142 AGTACTGATAGAAGTTTGCACGC 59.073 43.478 0.00 0.00 0.00 5.34
2381 4931 5.230306 GCTAGTACTGATAGAAGTTTGCACG 59.770 44.000 5.39 0.00 0.00 5.34
2382 4932 6.100004 TGCTAGTACTGATAGAAGTTTGCAC 58.900 40.000 5.39 0.00 0.00 4.57
2383 4933 6.280855 TGCTAGTACTGATAGAAGTTTGCA 57.719 37.500 5.39 0.00 0.00 4.08
2384 4934 7.596749 TTTGCTAGTACTGATAGAAGTTTGC 57.403 36.000 5.39 0.00 0.00 3.68
2385 4935 9.979270 CATTTTGCTAGTACTGATAGAAGTTTG 57.021 33.333 5.39 0.00 0.00 2.93
2386 4936 9.167311 CCATTTTGCTAGTACTGATAGAAGTTT 57.833 33.333 5.39 0.00 0.00 2.66
2387 4937 7.281100 GCCATTTTGCTAGTACTGATAGAAGTT 59.719 37.037 5.39 0.00 0.00 2.66
2388 4938 6.763610 GCCATTTTGCTAGTACTGATAGAAGT 59.236 38.462 5.39 0.00 0.00 3.01
2389 4939 6.203723 GGCCATTTTGCTAGTACTGATAGAAG 59.796 42.308 5.39 0.00 0.00 2.85
2390 4940 6.055588 GGCCATTTTGCTAGTACTGATAGAA 58.944 40.000 5.39 0.00 0.00 2.10
2391 4941 5.454755 GGGCCATTTTGCTAGTACTGATAGA 60.455 44.000 4.39 0.00 0.00 1.98
2392 4942 4.757149 GGGCCATTTTGCTAGTACTGATAG 59.243 45.833 4.39 0.00 0.00 2.08
2393 4943 4.714632 GGGCCATTTTGCTAGTACTGATA 58.285 43.478 4.39 0.00 0.00 2.15
2394 4944 3.555966 GGGCCATTTTGCTAGTACTGAT 58.444 45.455 4.39 0.00 0.00 2.90
2395 4945 2.679639 CGGGCCATTTTGCTAGTACTGA 60.680 50.000 4.39 0.00 0.00 3.41
2396 4946 1.670811 CGGGCCATTTTGCTAGTACTG 59.329 52.381 4.39 0.00 0.00 2.74
2397 4947 1.280998 ACGGGCCATTTTGCTAGTACT 59.719 47.619 4.39 0.00 0.00 2.73
2398 4948 1.400494 CACGGGCCATTTTGCTAGTAC 59.600 52.381 4.39 0.00 0.00 2.73
2399 4949 1.745232 CACGGGCCATTTTGCTAGTA 58.255 50.000 4.39 0.00 0.00 1.82
2400 4950 1.595093 GCACGGGCCATTTTGCTAGT 61.595 55.000 4.39 0.00 32.00 2.57
2401 4951 1.139520 GCACGGGCCATTTTGCTAG 59.860 57.895 4.39 0.00 32.00 3.42
2402 4952 2.695759 CGCACGGGCCATTTTGCTA 61.696 57.895 2.82 0.00 36.38 3.49
2403 4953 4.054825 CGCACGGGCCATTTTGCT 62.055 61.111 2.82 0.00 36.38 3.91
2404 4954 3.857109 AACGCACGGGCCATTTTGC 62.857 57.895 2.82 6.03 36.38 3.68
2405 4955 2.021039 CAACGCACGGGCCATTTTG 61.021 57.895 2.82 0.00 36.38 2.44
2406 4956 1.173444 TACAACGCACGGGCCATTTT 61.173 50.000 2.82 0.00 36.38 1.82
2407 4957 1.173444 TTACAACGCACGGGCCATTT 61.173 50.000 2.82 0.00 36.38 2.32
2408 4958 1.601197 TTACAACGCACGGGCCATT 60.601 52.632 2.82 0.00 36.38 3.16
2409 4959 2.032834 TTACAACGCACGGGCCAT 59.967 55.556 2.82 0.00 36.38 4.40
2410 4960 2.973600 GTTACAACGCACGGGCCA 60.974 61.111 2.82 0.00 36.38 5.36
2411 4961 2.961669 CTGTTACAACGCACGGGCC 61.962 63.158 2.82 0.00 36.38 5.80
2412 4962 2.554272 CTGTTACAACGCACGGGC 59.446 61.111 0.00 0.00 0.00 6.13
2413 4963 1.289109 CTCCTGTTACAACGCACGGG 61.289 60.000 0.00 0.00 40.43 5.28
2414 4964 0.319211 TCTCCTGTTACAACGCACGG 60.319 55.000 0.00 0.00 0.00 4.94
2415 4965 1.710013 ATCTCCTGTTACAACGCACG 58.290 50.000 0.00 0.00 0.00 5.34
2416 4966 4.483476 AAAATCTCCTGTTACAACGCAC 57.517 40.909 0.00 0.00 0.00 5.34
2437 4987 7.765360 GTCATGGCCATTGAAGATTATGAAAAA 59.235 33.333 17.92 0.00 0.00 1.94
2438 4988 7.267128 GTCATGGCCATTGAAGATTATGAAAA 58.733 34.615 17.92 0.00 0.00 2.29
2439 4989 6.183360 GGTCATGGCCATTGAAGATTATGAAA 60.183 38.462 17.92 0.00 0.00 2.69
2440 4990 5.302568 GGTCATGGCCATTGAAGATTATGAA 59.697 40.000 17.92 0.00 0.00 2.57
2441 4991 4.828939 GGTCATGGCCATTGAAGATTATGA 59.171 41.667 17.92 4.66 0.00 2.15
2442 4992 4.585581 TGGTCATGGCCATTGAAGATTATG 59.414 41.667 17.02 1.77 32.81 1.90
2443 4993 4.586001 GTGGTCATGGCCATTGAAGATTAT 59.414 41.667 24.46 0.00 41.08 1.28
2444 4994 3.953612 GTGGTCATGGCCATTGAAGATTA 59.046 43.478 24.46 0.85 41.08 1.75
2445 4995 2.762327 GTGGTCATGGCCATTGAAGATT 59.238 45.455 24.46 0.00 41.08 2.40
2446 4996 2.291735 TGTGGTCATGGCCATTGAAGAT 60.292 45.455 24.46 0.00 41.08 2.40
2447 4997 1.075212 TGTGGTCATGGCCATTGAAGA 59.925 47.619 24.46 7.54 41.08 2.87
2448 4998 1.548081 TGTGGTCATGGCCATTGAAG 58.452 50.000 24.46 4.74 41.08 3.02
2449 4999 2.234896 ATGTGGTCATGGCCATTGAA 57.765 45.000 24.46 9.36 41.08 2.69
2450 5000 2.234896 AATGTGGTCATGGCCATTGA 57.765 45.000 24.46 14.39 41.08 2.57
2451 5001 3.004171 CAAAATGTGGTCATGGCCATTG 58.996 45.455 24.46 18.53 41.08 2.82
2452 5002 2.616001 GCAAAATGTGGTCATGGCCATT 60.616 45.455 24.46 11.20 41.08 3.16
2453 5003 1.065998 GCAAAATGTGGTCATGGCCAT 60.066 47.619 24.46 14.09 41.08 4.40
2454 5004 0.321021 GCAAAATGTGGTCATGGCCA 59.679 50.000 17.02 17.02 34.19 5.36
2455 5005 0.609662 AGCAAAATGTGGTCATGGCC 59.390 50.000 10.20 10.20 34.19 5.36
2456 5006 1.717194 CAGCAAAATGTGGTCATGGC 58.283 50.000 0.00 0.00 35.13 4.40
2457 5007 1.001068 TGCAGCAAAATGTGGTCATGG 59.999 47.619 0.00 0.00 35.13 3.66
2458 5008 2.442212 TGCAGCAAAATGTGGTCATG 57.558 45.000 0.00 0.00 35.13 3.07
2459 5009 2.563620 TGATGCAGCAAAATGTGGTCAT 59.436 40.909 0.00 0.00 35.13 3.06
2460 5010 1.962100 TGATGCAGCAAAATGTGGTCA 59.038 42.857 0.00 0.00 35.13 4.02
2461 5011 2.331194 GTGATGCAGCAAAATGTGGTC 58.669 47.619 6.05 0.00 35.13 4.02
2462 5012 1.001181 GGTGATGCAGCAAAATGTGGT 59.999 47.619 6.05 0.00 38.97 4.16
2463 5013 1.001068 TGGTGATGCAGCAAAATGTGG 59.999 47.619 6.05 0.00 38.96 4.17
2464 5014 2.442212 TGGTGATGCAGCAAAATGTG 57.558 45.000 6.05 0.00 38.96 3.21
2471 5021 3.452264 AGTAGTATCTTGGTGATGCAGCA 59.548 43.478 0.00 0.00 39.75 4.41
2472 5022 4.065321 AGTAGTATCTTGGTGATGCAGC 57.935 45.455 0.00 0.00 39.75 5.25
2473 5023 5.911752 AGAAGTAGTATCTTGGTGATGCAG 58.088 41.667 0.00 0.00 39.75 4.41
2474 5024 5.939764 AGAAGTAGTATCTTGGTGATGCA 57.060 39.130 0.00 0.00 39.75 3.96
2475 5025 8.894768 AATAAGAAGTAGTATCTTGGTGATGC 57.105 34.615 0.00 0.00 37.67 3.91
2478 5028 9.886132 GGAAAATAAGAAGTAGTATCTTGGTGA 57.114 33.333 0.00 0.00 37.67 4.02
2479 5029 9.892130 AGGAAAATAAGAAGTAGTATCTTGGTG 57.108 33.333 0.00 0.00 37.67 4.17
2480 5030 9.892130 CAGGAAAATAAGAAGTAGTATCTTGGT 57.108 33.333 0.00 0.00 37.67 3.67
2488 5038 8.936864 CACGATTTCAGGAAAATAAGAAGTAGT 58.063 33.333 0.00 0.00 37.70 2.73
2489 5039 9.151471 TCACGATTTCAGGAAAATAAGAAGTAG 57.849 33.333 0.00 0.00 37.70 2.57
2490 5040 9.667107 ATCACGATTTCAGGAAAATAAGAAGTA 57.333 29.630 0.00 0.00 37.70 2.24
2491 5041 7.979444 TCACGATTTCAGGAAAATAAGAAGT 57.021 32.000 0.00 0.00 37.70 3.01
2492 5042 9.846248 AAATCACGATTTCAGGAAAATAAGAAG 57.154 29.630 0.00 0.00 37.70 2.85
2545 5095 9.599866 TCACGATTTCTGATATGTTCATAAGTT 57.400 29.630 0.00 0.00 32.72 2.66
2546 5096 9.599866 TTCACGATTTCTGATATGTTCATAAGT 57.400 29.630 0.00 0.00 32.72 2.24
2547 5097 9.855361 GTTCACGATTTCTGATATGTTCATAAG 57.145 33.333 0.00 0.00 32.72 1.73
2548 5098 9.377312 TGTTCACGATTTCTGATATGTTCATAA 57.623 29.630 0.00 0.00 32.72 1.90
2549 5099 8.940768 TGTTCACGATTTCTGATATGTTCATA 57.059 30.769 0.00 0.00 32.72 2.15
2550 5100 7.848223 TGTTCACGATTTCTGATATGTTCAT 57.152 32.000 0.00 0.00 32.72 2.57
2551 5101 7.848223 ATGTTCACGATTTCTGATATGTTCA 57.152 32.000 0.00 0.00 0.00 3.18
2552 5102 9.559958 AAAATGTTCACGATTTCTGATATGTTC 57.440 29.630 0.00 0.00 0.00 3.18
2553 5103 9.912634 AAAAATGTTCACGATTTCTGATATGTT 57.087 25.926 0.00 0.00 0.00 2.71
2554 5104 9.559958 GAAAAATGTTCACGATTTCTGATATGT 57.440 29.630 0.00 0.00 0.00 2.29
2555 5105 9.558648 TGAAAAATGTTCACGATTTCTGATATG 57.441 29.630 0.00 0.00 32.60 1.78
2557 5107 9.958234 TTTGAAAAATGTTCACGATTTCTGATA 57.042 25.926 0.00 0.00 32.60 2.15
2558 5108 8.870160 TTTGAAAAATGTTCACGATTTCTGAT 57.130 26.923 0.00 0.00 32.60 2.90
2559 5109 8.870160 ATTTGAAAAATGTTCACGATTTCTGA 57.130 26.923 0.00 0.00 32.60 3.27
2560 5110 9.571804 GAATTTGAAAAATGTTCACGATTTCTG 57.428 29.630 0.00 0.00 32.60 3.02
2561 5111 9.311916 TGAATTTGAAAAATGTTCACGATTTCT 57.688 25.926 0.00 0.00 32.60 2.52
2563 5113 9.866936 CATGAATTTGAAAAATGTTCACGATTT 57.133 25.926 0.00 0.00 32.30 2.17
2564 5114 9.258826 TCATGAATTTGAAAAATGTTCACGATT 57.741 25.926 0.00 0.00 32.30 3.34
2565 5115 8.815141 TCATGAATTTGAAAAATGTTCACGAT 57.185 26.923 0.00 0.00 32.30 3.73
2566 5116 8.538856 GTTCATGAATTTGAAAAATGTTCACGA 58.461 29.630 12.12 0.00 37.36 4.35
2567 5117 8.326713 TGTTCATGAATTTGAAAAATGTTCACG 58.673 29.630 12.12 0.00 37.36 4.35
2661 5211 8.954950 TCTTGAAATGTTTGCCTATTCAAAAA 57.045 26.923 0.00 0.00 38.92 1.94
2662 5212 8.954950 TTCTTGAAATGTTTGCCTATTCAAAA 57.045 26.923 0.00 0.00 38.92 2.44
2663 5213 9.206870 GATTCTTGAAATGTTTGCCTATTCAAA 57.793 29.630 0.00 0.00 38.92 2.69
2664 5214 7.818930 GGATTCTTGAAATGTTTGCCTATTCAA 59.181 33.333 0.00 0.00 37.59 2.69
2665 5215 7.039152 TGGATTCTTGAAATGTTTGCCTATTCA 60.039 33.333 0.00 0.00 0.00 2.57
2666 5216 7.322664 TGGATTCTTGAAATGTTTGCCTATTC 58.677 34.615 0.00 0.00 0.00 1.75
2667 5217 7.243604 TGGATTCTTGAAATGTTTGCCTATT 57.756 32.000 0.00 0.00 0.00 1.73
2668 5218 6.855763 TGGATTCTTGAAATGTTTGCCTAT 57.144 33.333 0.00 0.00 0.00 2.57
2669 5219 6.436847 TCATGGATTCTTGAAATGTTTGCCTA 59.563 34.615 0.00 0.00 0.00 3.93
2670 5220 5.246656 TCATGGATTCTTGAAATGTTTGCCT 59.753 36.000 0.00 0.00 0.00 4.75
2671 5221 5.481105 TCATGGATTCTTGAAATGTTTGCC 58.519 37.500 0.00 0.00 0.00 4.52
2672 5222 6.424509 TGTTCATGGATTCTTGAAATGTTTGC 59.575 34.615 3.96 0.00 38.31 3.68
2673 5223 7.949903 TGTTCATGGATTCTTGAAATGTTTG 57.050 32.000 3.96 0.00 38.31 2.93
2674 5224 9.563748 AAATGTTCATGGATTCTTGAAATGTTT 57.436 25.926 3.96 3.95 38.31 2.83
2675 5225 9.563748 AAAATGTTCATGGATTCTTGAAATGTT 57.436 25.926 3.96 0.97 38.31 2.71
2676 5226 9.563748 AAAAATGTTCATGGATTCTTGAAATGT 57.436 25.926 3.96 0.00 38.31 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.