Multiple sequence alignment - TraesCS6A01G303000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G303000 | chr6A | 100.000 | 4514 | 0 | 0 | 1 | 4514 | 536250822 | 536255335 | 0.000000e+00 | 8336.0 |
1 | TraesCS6A01G303000 | chr6A | 100.000 | 44 | 0 | 0 | 4000 | 4043 | 536254778 | 536254821 | 1.040000e-11 | 82.4 |
2 | TraesCS6A01G303000 | chr6A | 100.000 | 44 | 0 | 0 | 3957 | 4000 | 536254821 | 536254864 | 1.040000e-11 | 82.4 |
3 | TraesCS6A01G303000 | chr6D | 91.802 | 1842 | 95 | 21 | 1832 | 3646 | 389972423 | 389974235 | 0.000000e+00 | 2514.0 |
4 | TraesCS6A01G303000 | chr6D | 92.222 | 720 | 38 | 10 | 655 | 1370 | 389971173 | 389971878 | 0.000000e+00 | 1003.0 |
5 | TraesCS6A01G303000 | chr6D | 91.989 | 362 | 11 | 3 | 3645 | 3997 | 389974278 | 389974630 | 4.060000e-135 | 492.0 |
6 | TraesCS6A01G303000 | chr6D | 81.664 | 529 | 62 | 20 | 4000 | 4514 | 389974590 | 389975097 | 1.510000e-109 | 407.0 |
7 | TraesCS6A01G303000 | chr6D | 87.156 | 327 | 20 | 8 | 302 | 626 | 389969067 | 389969373 | 7.180000e-93 | 351.0 |
8 | TraesCS6A01G303000 | chr6D | 87.580 | 314 | 21 | 11 | 2 | 301 | 389968585 | 389968894 | 9.290000e-92 | 348.0 |
9 | TraesCS6A01G303000 | chr6D | 86.364 | 198 | 20 | 3 | 2914 | 3111 | 445766140 | 445765950 | 4.580000e-50 | 209.0 |
10 | TraesCS6A01G303000 | chr6D | 82.192 | 146 | 24 | 2 | 2972 | 3116 | 389973703 | 389973559 | 1.700000e-24 | 124.0 |
11 | TraesCS6A01G303000 | chr6B | 89.966 | 1764 | 100 | 47 | 134 | 1840 | 583611567 | 583613310 | 0.000000e+00 | 2206.0 |
12 | TraesCS6A01G303000 | chr6B | 95.144 | 762 | 36 | 1 | 1832 | 2592 | 583613334 | 583614095 | 0.000000e+00 | 1201.0 |
13 | TraesCS6A01G303000 | chr6B | 93.770 | 305 | 17 | 2 | 3338 | 3640 | 583614554 | 583614858 | 1.480000e-124 | 457.0 |
14 | TraesCS6A01G303000 | chr6B | 87.240 | 337 | 27 | 12 | 2578 | 2914 | 583614161 | 583614481 | 1.980000e-98 | 370.0 |
15 | TraesCS6A01G303000 | chr6B | 93.048 | 187 | 3 | 1 | 3645 | 3831 | 583614913 | 583615089 | 9.630000e-67 | 265.0 |
16 | TraesCS6A01G303000 | chr6B | 84.681 | 235 | 26 | 6 | 2914 | 3147 | 672366444 | 672366219 | 4.540000e-55 | 226.0 |
17 | TraesCS6A01G303000 | chr6B | 93.902 | 82 | 5 | 0 | 3853 | 3934 | 584311357 | 584311276 | 1.700000e-24 | 124.0 |
18 | TraesCS6A01G303000 | chr3A | 87.156 | 218 | 27 | 1 | 2918 | 3135 | 455780258 | 455780042 | 3.490000e-61 | 246.0 |
19 | TraesCS6A01G303000 | chr3A | 86.364 | 198 | 23 | 2 | 2918 | 3111 | 182637176 | 182637373 | 3.540000e-51 | 213.0 |
20 | TraesCS6A01G303000 | chr3A | 91.379 | 116 | 10 | 0 | 2996 | 3111 | 734786096 | 734786211 | 4.670000e-35 | 159.0 |
21 | TraesCS6A01G303000 | chr7A | 90.683 | 161 | 13 | 1 | 980 | 1138 | 137763680 | 137763840 | 3.540000e-51 | 213.0 |
22 | TraesCS6A01G303000 | chr7D | 92.958 | 142 | 10 | 0 | 997 | 1138 | 137555469 | 137555610 | 1.650000e-49 | 207.0 |
23 | TraesCS6A01G303000 | chr3B | 92.241 | 116 | 9 | 0 | 2996 | 3111 | 812340196 | 812340311 | 1.000000e-36 | 165.0 |
24 | TraesCS6A01G303000 | chr3B | 95.122 | 41 | 2 | 0 | 3103 | 3143 | 56343384 | 56343424 | 1.050000e-06 | 65.8 |
25 | TraesCS6A01G303000 | chr3D | 91.379 | 116 | 10 | 0 | 2996 | 3111 | 604669248 | 604669363 | 4.670000e-35 | 159.0 |
26 | TraesCS6A01G303000 | chr5D | 82.123 | 179 | 28 | 3 | 2918 | 3093 | 246301290 | 246301113 | 2.810000e-32 | 150.0 |
27 | TraesCS6A01G303000 | chr1B | 93.056 | 72 | 5 | 0 | 2938 | 3009 | 302211336 | 302211265 | 6.180000e-19 | 106.0 |
28 | TraesCS6A01G303000 | chr1B | 85.542 | 83 | 10 | 2 | 2910 | 2992 | 660292118 | 660292038 | 8.050000e-13 | 86.1 |
29 | TraesCS6A01G303000 | chr4A | 80.000 | 110 | 18 | 4 | 2915 | 3023 | 159482944 | 159482838 | 1.350000e-10 | 78.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G303000 | chr6A | 536250822 | 536255335 | 4513 | False | 2833.6 | 8336 | 100.0000 | 1 | 4514 | 3 | chr6A.!!$F1 | 4513 |
1 | TraesCS6A01G303000 | chr6D | 389968585 | 389975097 | 6512 | False | 852.5 | 2514 | 88.7355 | 2 | 4514 | 6 | chr6D.!!$F1 | 4512 |
2 | TraesCS6A01G303000 | chr6B | 583611567 | 583615089 | 3522 | False | 899.8 | 2206 | 91.8336 | 134 | 3831 | 5 | chr6B.!!$F1 | 3697 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
651 | 861 | 0.037326 | TGGGCTACTGTTTCTGAGCG | 60.037 | 55.0 | 0.0 | 0.0 | 35.71 | 5.03 | F |
1189 | 3165 | 0.107993 | TCCTGATCCGCTTGCTTGAG | 60.108 | 55.0 | 0.0 | 0.0 | 0.00 | 3.02 | F |
1652 | 3730 | 0.106335 | ATGGAGATGCAGAGAAGCCG | 59.894 | 55.0 | 0.0 | 0.0 | 0.00 | 5.52 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1601 | 3671 | 0.107654 | GTCCCCTGATTGTCCCTTCG | 60.108 | 60.0 | 0.00 | 0.00 | 0.00 | 3.79 | R |
2694 | 4917 | 0.389948 | GTACGGAACACTGGCTCAGG | 60.390 | 60.0 | 7.06 | 0.01 | 35.51 | 3.86 | R |
3565 | 5853 | 0.317770 | CGTGGACGCAACAAAAGCAT | 60.318 | 50.0 | 0.00 | 0.00 | 0.00 | 3.79 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
31 | 34 | 9.620660 | AAAAATTAATGTAAACTCGATCCACAC | 57.379 | 29.630 | 0.00 | 0.00 | 0.00 | 3.82 |
34 | 37 | 1.972075 | TGTAAACTCGATCCACACCCA | 59.028 | 47.619 | 0.00 | 0.00 | 0.00 | 4.51 |
74 | 77 | 5.981088 | TCATTGTGCCTAACATCACATTT | 57.019 | 34.783 | 0.00 | 0.00 | 42.07 | 2.32 |
80 | 83 | 5.534278 | TGTGCCTAACATCACATTTGAAAGA | 59.466 | 36.000 | 0.00 | 0.00 | 38.18 | 2.52 |
81 | 84 | 6.088824 | GTGCCTAACATCACATTTGAAAGAG | 58.911 | 40.000 | 0.00 | 0.00 | 34.61 | 2.85 |
82 | 85 | 5.098211 | GCCTAACATCACATTTGAAAGAGC | 58.902 | 41.667 | 0.00 | 0.00 | 34.61 | 4.09 |
112 | 119 | 4.277476 | TGCATAACCTCCATTCCGATTTT | 58.723 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
155 | 167 | 5.589050 | GGAATGTAGGGTAGTTTGTCATTCC | 59.411 | 44.000 | 15.03 | 15.03 | 46.28 | 3.01 |
164 | 179 | 5.988561 | GGTAGTTTGTCATTCCAAATTTGCA | 59.011 | 36.000 | 12.92 | 0.00 | 36.75 | 4.08 |
307 | 495 | 3.181451 | TGCCCTGATAGTAAATGGAGCTG | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 4.24 |
333 | 521 | 4.159377 | TCGCATCATGTTTGTCCTTTTC | 57.841 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
334 | 522 | 3.567585 | TCGCATCATGTTTGTCCTTTTCA | 59.432 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
348 | 536 | 8.647143 | TTGTCCTTTTCAATTTCTTGATTGAC | 57.353 | 30.769 | 0.15 | 0.00 | 43.61 | 3.18 |
425 | 615 | 8.638565 | GTGACTTCGATTCAAACCATTTTATTG | 58.361 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
507 | 704 | 1.845809 | CGCAGTCAAGCCACCAAGAC | 61.846 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
521 | 718 | 0.721718 | CAAGACAGAAATCCGCGTCC | 59.278 | 55.000 | 4.92 | 0.00 | 0.00 | 4.79 |
537 | 734 | 0.038159 | GTCCGTCCATCCCGATCATC | 60.038 | 60.000 | 0.00 | 0.00 | 0.00 | 2.92 |
547 | 744 | 0.249911 | CCCGATCATCGTTTCCTCCC | 60.250 | 60.000 | 6.25 | 0.00 | 38.40 | 4.30 |
557 | 754 | 4.276058 | TCGTTTCCTCCCGACTAAAAAT | 57.724 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
645 | 855 | 1.604604 | TGCAGTTGGGCTACTGTTTC | 58.395 | 50.000 | 17.30 | 6.06 | 45.76 | 2.78 |
646 | 856 | 1.142870 | TGCAGTTGGGCTACTGTTTCT | 59.857 | 47.619 | 17.30 | 0.00 | 45.76 | 2.52 |
651 | 861 | 0.037326 | TGGGCTACTGTTTCTGAGCG | 60.037 | 55.000 | 0.00 | 0.00 | 35.71 | 5.03 |
729 | 2698 | 3.678548 | GGTTCGAGCACCAGTTAAAGTAG | 59.321 | 47.826 | 0.53 | 0.00 | 36.73 | 2.57 |
782 | 2751 | 0.836400 | GTCTTCTCCCTCCACCACCA | 60.836 | 60.000 | 0.00 | 0.00 | 0.00 | 4.17 |
786 | 2755 | 3.869934 | TCCCTCCACCACCACCCT | 61.870 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
790 | 2759 | 4.995058 | TCCACCACCACCCTCCCC | 62.995 | 72.222 | 0.00 | 0.00 | 0.00 | 4.81 |
793 | 2762 | 4.677151 | ACCACCACCCTCCCCCTC | 62.677 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
865 | 2836 | 1.453155 | GGAAGCAAGAATTCCTCGCA | 58.547 | 50.000 | 12.32 | 0.00 | 42.52 | 5.10 |
958 | 2929 | 1.327303 | CTCTCGGATCTTGGGAGGAG | 58.673 | 60.000 | 7.31 | 0.00 | 0.00 | 3.69 |
1189 | 3165 | 0.107993 | TCCTGATCCGCTTGCTTGAG | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1214 | 3191 | 4.868900 | CGGGAAAAGATGCGCGCG | 62.869 | 66.667 | 28.44 | 28.44 | 33.85 | 6.86 |
1240 | 3217 | 1.302033 | CTCCTGCTGCCACGAAGTT | 60.302 | 57.895 | 0.00 | 0.00 | 41.61 | 2.66 |
1241 | 3218 | 0.886490 | CTCCTGCTGCCACGAAGTTT | 60.886 | 55.000 | 0.00 | 0.00 | 41.61 | 2.66 |
1242 | 3219 | 0.884704 | TCCTGCTGCCACGAAGTTTC | 60.885 | 55.000 | 0.00 | 0.00 | 41.61 | 2.78 |
1270 | 3247 | 6.428083 | TTCGGGGATCATGTATAGCTTTTA | 57.572 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
1276 | 3253 | 9.914131 | GGGGATCATGTATAGCTTTTATTTTTC | 57.086 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1370 | 3350 | 5.350091 | GTGCCTGATTAGTTGTTCTTCTCTC | 59.650 | 44.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1388 | 3421 | 1.914051 | CTCGAGTAACACATGACTGCG | 59.086 | 52.381 | 3.62 | 0.00 | 0.00 | 5.18 |
1401 | 3434 | 1.001020 | ACTGCGGCATCATTTCCCA | 60.001 | 52.632 | 1.75 | 0.00 | 0.00 | 4.37 |
1422 | 3455 | 1.831652 | CTCCCCTCGGCTTCAACACT | 61.832 | 60.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1440 | 3473 | 5.043737 | ACACTGCTTTAGAACTGGGTAAA | 57.956 | 39.130 | 0.00 | 0.00 | 0.00 | 2.01 |
1456 | 3489 | 5.613329 | TGGGTAAACTATATAAACGGCCAG | 58.387 | 41.667 | 2.24 | 0.00 | 0.00 | 4.85 |
1462 | 3495 | 9.480053 | GTAAACTATATAAACGGCCAGTTGATA | 57.520 | 33.333 | 15.53 | 15.53 | 43.37 | 2.15 |
1478 | 3511 | 6.183347 | CAGTTGATAATTCCCCTTCTCAGTT | 58.817 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1508 | 3541 | 9.765795 | GTGTATGCATACCTATAGAAAAACTCT | 57.234 | 33.333 | 29.36 | 0.00 | 33.81 | 3.24 |
1554 | 3589 | 8.658609 | CAAAATGGTACTATGATTTTGCCAAAG | 58.341 | 33.333 | 14.28 | 0.00 | 39.14 | 2.77 |
1581 | 3620 | 2.643551 | GCAGAATTCCGGGAAGATCAA | 58.356 | 47.619 | 20.89 | 0.00 | 0.00 | 2.57 |
1612 | 3682 | 3.053831 | ACAATCGAACGAAGGGACAAT | 57.946 | 42.857 | 0.12 | 0.00 | 0.00 | 2.71 |
1615 | 3685 | 2.363788 | TCGAACGAAGGGACAATCAG | 57.636 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1618 | 3688 | 0.328258 | AACGAAGGGACAATCAGGGG | 59.672 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1619 | 3689 | 0.546747 | ACGAAGGGACAATCAGGGGA | 60.547 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
1621 | 3691 | 0.991920 | GAAGGGACAATCAGGGGACA | 59.008 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1622 | 3692 | 1.354368 | GAAGGGACAATCAGGGGACAA | 59.646 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
1623 | 3693 | 1.455822 | AGGGACAATCAGGGGACAAA | 58.544 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1624 | 3694 | 2.003072 | AGGGACAATCAGGGGACAAAT | 58.997 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
1627 | 3705 | 3.954258 | GGGACAATCAGGGGACAAATAAG | 59.046 | 47.826 | 0.00 | 0.00 | 0.00 | 1.73 |
1629 | 3707 | 4.640647 | GGACAATCAGGGGACAAATAAGTC | 59.359 | 45.833 | 0.00 | 0.00 | 37.80 | 3.01 |
1652 | 3730 | 0.106335 | ATGGAGATGCAGAGAAGCCG | 59.894 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1750 | 3847 | 4.174762 | GTCTCTCCATCTTTACACGAACC | 58.825 | 47.826 | 0.00 | 0.00 | 0.00 | 3.62 |
1820 | 3917 | 5.912892 | TCATTATGCCTAACGATCTGTTCA | 58.087 | 37.500 | 6.27 | 1.15 | 42.09 | 3.18 |
1829 | 3926 | 6.238130 | GCCTAACGATCTGTTCAAAGTTATCC | 60.238 | 42.308 | 6.27 | 0.00 | 42.09 | 2.59 |
1909 | 4039 | 4.635765 | TGAATTAGCTCCCAGAAACAATCG | 59.364 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
1925 | 4055 | 1.281419 | ATCGGTTCATGGTGTGGGTA | 58.719 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1948 | 4078 | 7.933033 | GGTACTTATTAACCCGAACATATGGAA | 59.067 | 37.037 | 7.80 | 0.00 | 0.00 | 3.53 |
1958 | 4088 | 5.056480 | CCGAACATATGGAAGCTAATCACA | 58.944 | 41.667 | 7.80 | 0.00 | 0.00 | 3.58 |
1966 | 4096 | 4.858850 | TGGAAGCTAATCACAACCATCAT | 58.141 | 39.130 | 0.00 | 0.00 | 0.00 | 2.45 |
2031 | 4161 | 2.765699 | TCCCAGGGCTTAATTTGCATTC | 59.234 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
2037 | 4167 | 4.400567 | AGGGCTTAATTTGCATTCTGACTC | 59.599 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
2129 | 4271 | 7.598493 | CGAATTTATGTGGATTGGTTCTTTTGT | 59.402 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2147 | 4289 | 7.103641 | TCTTTTGTAAACTCGCTCCATAATCT | 58.896 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
2524 | 4667 | 9.469807 | ACTATCGTTTTAGATTCTATGCTTCAG | 57.530 | 33.333 | 0.00 | 0.00 | 32.39 | 3.02 |
2534 | 4677 | 6.541641 | AGATTCTATGCTTCAGAAATCCACAC | 59.458 | 38.462 | 0.45 | 0.00 | 35.73 | 3.82 |
2620 | 4843 | 8.112822 | TCCATGGAGTGAAATTTATTACTTCCA | 58.887 | 33.333 | 11.44 | 15.14 | 0.00 | 3.53 |
2640 | 4863 | 9.492730 | ACTTCCATTTTATTATTTCCATGGAGT | 57.507 | 29.630 | 15.53 | 10.58 | 40.92 | 3.85 |
2641 | 4864 | 9.754382 | CTTCCATTTTATTATTTCCATGGAGTG | 57.246 | 33.333 | 15.53 | 0.00 | 40.92 | 3.51 |
2642 | 4865 | 9.486123 | TTCCATTTTATTATTTCCATGGAGTGA | 57.514 | 29.630 | 15.53 | 5.78 | 40.92 | 3.41 |
2643 | 4866 | 9.486123 | TCCATTTTATTATTTCCATGGAGTGAA | 57.514 | 29.630 | 15.53 | 7.21 | 36.16 | 3.18 |
2694 | 4917 | 4.143305 | CGGAAATTCTGTTCGAACTCTGTC | 60.143 | 45.833 | 27.32 | 16.28 | 33.72 | 3.51 |
2714 | 4937 | 0.603569 | CTGAGCCAGTGTTCCGTACT | 59.396 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2723 | 4946 | 5.163581 | GCCAGTGTTCCGTACTTAGATAGAA | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2766 | 4989 | 8.046708 | ACTAAACAGCACATGGTATTATGAAGA | 58.953 | 33.333 | 0.00 | 0.00 | 0.00 | 2.87 |
2810 | 5045 | 7.996098 | TTTTCAGTCCTTTAGTGATTTAGGG | 57.004 | 36.000 | 0.00 | 0.00 | 37.39 | 3.53 |
2916 | 5200 | 4.590647 | TGGGCCAGTCATGTGAAAATTAAA | 59.409 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
2970 | 5255 | 1.067635 | AGCATGACAAATTGAACGCCC | 60.068 | 47.619 | 0.00 | 0.00 | 0.00 | 6.13 |
2992 | 5277 | 5.337410 | CCCAAGATGGCAAATTATGTTGTCA | 60.337 | 40.000 | 0.00 | 0.00 | 46.45 | 3.58 |
3004 | 5289 | 2.812836 | TGTTGTCATGAGGATGGCAT | 57.187 | 45.000 | 0.00 | 0.00 | 43.73 | 4.40 |
3116 | 5401 | 5.804473 | CGACAACATAATTTGCCATGCTTAA | 59.196 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
3153 | 5438 | 6.260936 | CAGATTTGTAGCATTCCCGACTATTT | 59.739 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
3188 | 5473 | 8.789767 | AAGGAGAGAGAGAATAATGAATACCA | 57.210 | 34.615 | 0.00 | 0.00 | 0.00 | 3.25 |
3191 | 5476 | 8.424918 | GGAGAGAGAGAATAATGAATACCAACA | 58.575 | 37.037 | 0.00 | 0.00 | 0.00 | 3.33 |
3212 | 5497 | 9.810231 | CCAACAAAAAGCATATGTTACAAAATC | 57.190 | 29.630 | 4.29 | 0.00 | 35.63 | 2.17 |
3258 | 5544 | 6.653740 | GGGGTTTAATGGACTTATATCCTTCG | 59.346 | 42.308 | 0.00 | 0.00 | 39.75 | 3.79 |
3303 | 5589 | 8.504005 | AGTAATGATGTTGTAAGTACAAAGTGC | 58.496 | 33.333 | 5.49 | 0.00 | 46.54 | 4.40 |
3325 | 5611 | 5.048013 | TGCATTAGGTATCTATCTGGTCACG | 60.048 | 44.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3354 | 5640 | 9.860650 | TGGATTACTATATGCAAAATAGTTGGT | 57.139 | 29.630 | 22.81 | 13.26 | 40.02 | 3.67 |
3393 | 5679 | 6.310956 | TGCAATTATGTGATGCTTAAAACTGC | 59.689 | 34.615 | 0.00 | 0.00 | 40.66 | 4.40 |
3397 | 5683 | 2.954989 | TGTGATGCTTAAAACTGCCACA | 59.045 | 40.909 | 0.00 | 0.00 | 32.15 | 4.17 |
3406 | 5692 | 6.644592 | TGCTTAAAACTGCCACACAATTTATC | 59.355 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
3407 | 5693 | 6.644592 | GCTTAAAACTGCCACACAATTTATCA | 59.355 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
3408 | 5694 | 7.170658 | GCTTAAAACTGCCACACAATTTATCAA | 59.829 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3409 | 5695 | 6.843069 | AAAACTGCCACACAATTTATCAAC | 57.157 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3410 | 5696 | 4.159377 | ACTGCCACACAATTTATCAACG | 57.841 | 40.909 | 0.00 | 0.00 | 0.00 | 4.10 |
3543 | 5831 | 0.392863 | CCCTGGTGATGTTCGATGCA | 60.393 | 55.000 | 0.00 | 0.00 | 0.00 | 3.96 |
3549 | 5837 | 1.594862 | GTGATGTTCGATGCACCTAGC | 59.405 | 52.381 | 0.00 | 0.00 | 45.96 | 3.42 |
3565 | 5853 | 6.154534 | TGCACCTAGCTGTAGAATTTCTCTTA | 59.845 | 38.462 | 1.27 | 0.00 | 45.94 | 2.10 |
3640 | 5928 | 2.611292 | GGAGCCATTGAAACTCGATCTG | 59.389 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3684 | 6023 | 0.323178 | CTCCTTGGGATGTTGCTGCT | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3685 | 6024 | 0.609957 | TCCTTGGGATGTTGCTGCTG | 60.610 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
3686 | 6025 | 0.896940 | CCTTGGGATGTTGCTGCTGT | 60.897 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3687 | 6026 | 1.614051 | CCTTGGGATGTTGCTGCTGTA | 60.614 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
3688 | 6027 | 1.741706 | CTTGGGATGTTGCTGCTGTAG | 59.258 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
3781 | 6120 | 5.181811 | CCATCTTTTCATTTTTCCTTTGGCC | 59.818 | 40.000 | 0.00 | 0.00 | 0.00 | 5.36 |
3892 | 6231 | 5.245531 | TGCTAAACATCTGGTACCTGAAAG | 58.754 | 41.667 | 23.51 | 20.06 | 0.00 | 2.62 |
3894 | 6233 | 5.938125 | GCTAAACATCTGGTACCTGAAAGAA | 59.062 | 40.000 | 23.51 | 9.12 | 34.07 | 2.52 |
3961 | 6309 | 1.509463 | CACGTGAAGCCTAGCCGTA | 59.491 | 57.895 | 10.90 | 0.00 | 0.00 | 4.02 |
3970 | 6318 | 2.877866 | AGCCTAGCCGTATATGAGTGT | 58.122 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
3997 | 6345 | 4.099266 | CCAGTGATGAAGTAGAAGAGGGAG | 59.901 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3999 | 6347 | 3.386402 | GTGATGAAGTAGAAGAGGGAGGG | 59.614 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
4000 | 6348 | 1.867363 | TGAAGTAGAAGAGGGAGGGC | 58.133 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
4001 | 6349 | 1.124780 | GAAGTAGAAGAGGGAGGGCC | 58.875 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
4002 | 6350 | 0.688087 | AAGTAGAAGAGGGAGGGCCG | 60.688 | 60.000 | 0.00 | 0.00 | 33.83 | 6.13 |
4003 | 6351 | 1.381463 | GTAGAAGAGGGAGGGCCGT | 60.381 | 63.158 | 0.00 | 0.00 | 33.83 | 5.68 |
4005 | 6353 | 0.858369 | TAGAAGAGGGAGGGCCGTAT | 59.142 | 55.000 | 0.00 | 0.00 | 33.83 | 3.06 |
4006 | 6354 | 0.858369 | AGAAGAGGGAGGGCCGTATA | 59.142 | 55.000 | 0.00 | 0.00 | 33.83 | 1.47 |
4007 | 6355 | 1.433592 | AGAAGAGGGAGGGCCGTATAT | 59.566 | 52.381 | 0.00 | 0.00 | 33.83 | 0.86 |
4008 | 6356 | 1.550976 | GAAGAGGGAGGGCCGTATATG | 59.449 | 57.143 | 0.00 | 0.00 | 33.83 | 1.78 |
4009 | 6357 | 0.784495 | AGAGGGAGGGCCGTATATGA | 59.216 | 55.000 | 0.00 | 0.00 | 33.83 | 2.15 |
4010 | 6358 | 1.187087 | GAGGGAGGGCCGTATATGAG | 58.813 | 60.000 | 0.00 | 0.00 | 33.83 | 2.90 |
4011 | 6359 | 0.487772 | AGGGAGGGCCGTATATGAGT | 59.512 | 55.000 | 0.00 | 0.00 | 33.83 | 3.41 |
4012 | 6360 | 0.608640 | GGGAGGGCCGTATATGAGTG | 59.391 | 60.000 | 0.00 | 0.00 | 33.83 | 3.51 |
4033 | 6400 | 3.578282 | TGTGAGCCAGTGATGAAGTAGAA | 59.422 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
4034 | 6401 | 4.180057 | GTGAGCCAGTGATGAAGTAGAAG | 58.820 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
4035 | 6402 | 4.081972 | GTGAGCCAGTGATGAAGTAGAAGA | 60.082 | 45.833 | 0.00 | 0.00 | 0.00 | 2.87 |
4036 | 6403 | 4.159321 | TGAGCCAGTGATGAAGTAGAAGAG | 59.841 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
4037 | 6404 | 3.450457 | AGCCAGTGATGAAGTAGAAGAGG | 59.550 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
4038 | 6405 | 3.431486 | GCCAGTGATGAAGTAGAAGAGGG | 60.431 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
4039 | 6406 | 4.026744 | CCAGTGATGAAGTAGAAGAGGGA | 58.973 | 47.826 | 0.00 | 0.00 | 0.00 | 4.20 |
4040 | 6407 | 4.099266 | CCAGTGATGAAGTAGAAGAGGGAG | 59.901 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4041 | 6408 | 4.099266 | CAGTGATGAAGTAGAAGAGGGAGG | 59.901 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4042 | 6409 | 3.386402 | GTGATGAAGTAGAAGAGGGAGGG | 59.614 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
4043 | 6410 | 3.012959 | TGATGAAGTAGAAGAGGGAGGGT | 59.987 | 47.826 | 0.00 | 0.00 | 0.00 | 4.34 |
4044 | 6411 | 3.562108 | TGAAGTAGAAGAGGGAGGGTT | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 4.11 |
4045 | 6412 | 3.173965 | TGAAGTAGAAGAGGGAGGGTTG | 58.826 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4046 | 6413 | 3.181410 | TGAAGTAGAAGAGGGAGGGTTGA | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
4047 | 6414 | 3.562108 | AGTAGAAGAGGGAGGGTTGAA | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
4048 | 6415 | 3.870559 | AGTAGAAGAGGGAGGGTTGAAA | 58.129 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
4049 | 6416 | 4.240323 | AGTAGAAGAGGGAGGGTTGAAAA | 58.760 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
4050 | 6417 | 4.852697 | AGTAGAAGAGGGAGGGTTGAAAAT | 59.147 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
4051 | 6418 | 6.030082 | AGTAGAAGAGGGAGGGTTGAAAATA | 58.970 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4052 | 6419 | 5.860648 | AGAAGAGGGAGGGTTGAAAATAA | 57.139 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
4053 | 6420 | 5.821097 | AGAAGAGGGAGGGTTGAAAATAAG | 58.179 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
4054 | 6421 | 3.969553 | AGAGGGAGGGTTGAAAATAAGC | 58.030 | 45.455 | 0.00 | 0.00 | 0.00 | 3.09 |
4055 | 6422 | 3.333680 | AGAGGGAGGGTTGAAAATAAGCA | 59.666 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
4056 | 6423 | 3.431415 | AGGGAGGGTTGAAAATAAGCAC | 58.569 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
4057 | 6424 | 2.496070 | GGGAGGGTTGAAAATAAGCACC | 59.504 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
4058 | 6425 | 2.163613 | GGAGGGTTGAAAATAAGCACCG | 59.836 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
4059 | 6426 | 1.544246 | AGGGTTGAAAATAAGCACCGC | 59.456 | 47.619 | 0.00 | 0.00 | 0.00 | 5.68 |
4060 | 6427 | 1.271102 | GGGTTGAAAATAAGCACCGCA | 59.729 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
4061 | 6428 | 2.324860 | GGTTGAAAATAAGCACCGCAC | 58.675 | 47.619 | 0.00 | 0.00 | 0.00 | 5.34 |
4062 | 6429 | 1.976045 | GTTGAAAATAAGCACCGCACG | 59.024 | 47.619 | 0.00 | 0.00 | 0.00 | 5.34 |
4063 | 6430 | 1.514003 | TGAAAATAAGCACCGCACGA | 58.486 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4064 | 6431 | 1.195900 | TGAAAATAAGCACCGCACGAC | 59.804 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
4065 | 6432 | 0.165079 | AAAATAAGCACCGCACGACG | 59.835 | 50.000 | 0.00 | 0.00 | 43.15 | 5.12 |
4077 | 6444 | 3.432588 | ACGACGAGCGGGACTGAG | 61.433 | 66.667 | 0.00 | 0.00 | 46.49 | 3.35 |
4078 | 6445 | 3.432588 | CGACGAGCGGGACTGAGT | 61.433 | 66.667 | 0.00 | 0.00 | 36.03 | 3.41 |
4079 | 6446 | 2.179517 | GACGAGCGGGACTGAGTG | 59.820 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
4080 | 6447 | 2.282251 | ACGAGCGGGACTGAGTGA | 60.282 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
4081 | 6448 | 1.658686 | GACGAGCGGGACTGAGTGAT | 61.659 | 60.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4082 | 6449 | 1.226802 | CGAGCGGGACTGAGTGATG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 3.07 |
4083 | 6450 | 1.657751 | CGAGCGGGACTGAGTGATGA | 61.658 | 60.000 | 0.00 | 0.00 | 0.00 | 2.92 |
4084 | 6451 | 0.532573 | GAGCGGGACTGAGTGATGAA | 59.467 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4085 | 6452 | 0.534412 | AGCGGGACTGAGTGATGAAG | 59.466 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4086 | 6453 | 0.532573 | GCGGGACTGAGTGATGAAGA | 59.467 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
4087 | 6454 | 1.066858 | GCGGGACTGAGTGATGAAGAA | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
4088 | 6455 | 2.886081 | CGGGACTGAGTGATGAAGAAG | 58.114 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
4089 | 6456 | 2.493675 | CGGGACTGAGTGATGAAGAAGA | 59.506 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
4108 | 6475 | 2.307098 | AGAGGGGGTTGAAGATGAACAG | 59.693 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4113 | 6480 | 2.821969 | GGGTTGAAGATGAACAGTGCAT | 59.178 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
4115 | 6482 | 3.366679 | GGTTGAAGATGAACAGTGCATGG | 60.367 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
4132 | 6508 | 5.351189 | GTGCATGGTCTGTTTTTGACTTTTT | 59.649 | 36.000 | 0.00 | 0.00 | 35.04 | 1.94 |
4144 | 6520 | 6.576662 | TTTTGACTTTTTGGCCATACGATA | 57.423 | 33.333 | 6.09 | 0.00 | 0.00 | 2.92 |
4155 | 6531 | 5.466819 | TGGCCATACGATAAAGATCTAACG | 58.533 | 41.667 | 0.00 | 2.54 | 0.00 | 3.18 |
4165 | 6541 | 7.230108 | ACGATAAAGATCTAACGGTCCTGATTA | 59.770 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
4169 | 6545 | 8.494016 | AAAGATCTAACGGTCCTGATTAAAAG | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
4170 | 6546 | 7.184067 | AGATCTAACGGTCCTGATTAAAAGT | 57.816 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
4171 | 6547 | 7.042335 | AGATCTAACGGTCCTGATTAAAAGTG | 58.958 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
4172 | 6548 | 6.349243 | TCTAACGGTCCTGATTAAAAGTGA | 57.651 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
4173 | 6549 | 6.161381 | TCTAACGGTCCTGATTAAAAGTGAC | 58.839 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4174 | 6550 | 4.345859 | ACGGTCCTGATTAAAAGTGACA | 57.654 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
4175 | 6551 | 4.315803 | ACGGTCCTGATTAAAAGTGACAG | 58.684 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
4176 | 6552 | 4.202326 | ACGGTCCTGATTAAAAGTGACAGT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
4177 | 6553 | 4.152402 | CGGTCCTGATTAAAAGTGACAGTG | 59.848 | 45.833 | 0.00 | 0.00 | 0.00 | 3.66 |
4178 | 6554 | 5.305585 | GGTCCTGATTAAAAGTGACAGTGA | 58.694 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
4179 | 6555 | 5.409826 | GGTCCTGATTAAAAGTGACAGTGAG | 59.590 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4180 | 6556 | 5.992217 | GTCCTGATTAAAAGTGACAGTGAGT | 59.008 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4181 | 6557 | 5.991606 | TCCTGATTAAAAGTGACAGTGAGTG | 59.008 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4182 | 6558 | 5.180117 | CCTGATTAAAAGTGACAGTGAGTGG | 59.820 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4183 | 6559 | 5.680619 | TGATTAAAAGTGACAGTGAGTGGT | 58.319 | 37.500 | 0.00 | 0.00 | 0.00 | 4.16 |
4184 | 6560 | 5.527214 | TGATTAAAAGTGACAGTGAGTGGTG | 59.473 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4185 | 6561 | 1.668419 | AAAGTGACAGTGAGTGGTGC | 58.332 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
4186 | 6562 | 0.541392 | AAGTGACAGTGAGTGGTGCA | 59.459 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
4187 | 6563 | 0.541392 | AGTGACAGTGAGTGGTGCAA | 59.459 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 |
4197 | 6573 | 6.701400 | ACAGTGAGTGGTGCAAATAAAAATTC | 59.299 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
4209 | 6585 | 6.408869 | CAAATAAAAATTCCAGGTGCCTGAT | 58.591 | 36.000 | 19.04 | 3.41 | 46.30 | 2.90 |
4210 | 6586 | 3.967332 | AAAAATTCCAGGTGCCTGATG | 57.033 | 42.857 | 19.04 | 4.17 | 46.30 | 3.07 |
4211 | 6587 | 2.610438 | AAATTCCAGGTGCCTGATGT | 57.390 | 45.000 | 19.04 | 0.00 | 46.30 | 3.06 |
4212 | 6588 | 3.737559 | AAATTCCAGGTGCCTGATGTA | 57.262 | 42.857 | 19.04 | 2.56 | 46.30 | 2.29 |
4213 | 6589 | 3.959495 | AATTCCAGGTGCCTGATGTAT | 57.041 | 42.857 | 19.04 | 4.60 | 46.30 | 2.29 |
4214 | 6590 | 5.387113 | AAATTCCAGGTGCCTGATGTATA | 57.613 | 39.130 | 19.04 | 0.00 | 46.30 | 1.47 |
4215 | 6591 | 4.630644 | ATTCCAGGTGCCTGATGTATAG | 57.369 | 45.455 | 19.04 | 1.41 | 46.30 | 1.31 |
4216 | 6592 | 1.694150 | TCCAGGTGCCTGATGTATAGC | 59.306 | 52.381 | 19.04 | 0.00 | 46.30 | 2.97 |
4217 | 6593 | 1.417517 | CCAGGTGCCTGATGTATAGCA | 59.582 | 52.381 | 19.04 | 0.00 | 46.30 | 3.49 |
4246 | 6622 | 4.593634 | GGTGCTCCTATTTATACACTCCCT | 59.406 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
4265 | 6642 | 3.366985 | CCCTTTGTTCGGAAATAACTGGC | 60.367 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
4279 | 6656 | 5.968528 | ATAACTGGCGTGGTTCAAATTTA | 57.031 | 34.783 | 0.00 | 0.00 | 0.00 | 1.40 |
4291 | 6668 | 8.322428 | CGTGGTTCAAATTTAAACTAAAACCAC | 58.678 | 33.333 | 27.62 | 27.62 | 43.90 | 4.16 |
4296 | 6673 | 8.804688 | TCAAATTTAAACTAAAACCACATCGG | 57.195 | 30.769 | 0.00 | 0.00 | 42.50 | 4.18 |
4339 | 6716 | 7.765695 | AATATGTATGTAGCTTGGGAAATGG | 57.234 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4340 | 6717 | 3.897239 | TGTATGTAGCTTGGGAAATGGG | 58.103 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
4342 | 6719 | 2.507407 | TGTAGCTTGGGAAATGGGTC | 57.493 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4346 | 6723 | 0.322546 | GCTTGGGAAATGGGTCGTCT | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
4351 | 6728 | 1.003233 | GGGAAATGGGTCGTCTGTTCT | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
4362 | 6739 | 6.072064 | TGGGTCGTCTGTTCTTGTTTTAAAAA | 60.072 | 34.615 | 1.31 | 0.00 | 0.00 | 1.94 |
4364 | 6741 | 7.245604 | GGTCGTCTGTTCTTGTTTTAAAAAGA | 58.754 | 34.615 | 1.31 | 0.12 | 0.00 | 2.52 |
4373 | 6750 | 9.302345 | GTTCTTGTTTTAAAAAGAAGAAGAGGG | 57.698 | 33.333 | 23.90 | 3.76 | 41.72 | 4.30 |
4375 | 6752 | 6.156748 | TGTTTTAAAAAGAAGAAGAGGGCC | 57.843 | 37.500 | 1.31 | 0.00 | 0.00 | 5.80 |
4484 | 6867 | 1.620822 | AAAACCATGACTGTGCTCCC | 58.379 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4486 | 6869 | 1.768684 | AACCATGACTGTGCTCCCGT | 61.769 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
4501 | 6884 | 1.069513 | TCCCGTGTAGTGGAGTTTGTG | 59.930 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
4507 | 6890 | 0.250124 | TAGTGGAGTTTGTGTGGCCG | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
6 | 7 | 8.241367 | GGTGTGGATCGAGTTTACATTAATTTT | 58.759 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
11 | 12 | 4.223255 | TGGGTGTGGATCGAGTTTACATTA | 59.777 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
12 | 13 | 3.008594 | TGGGTGTGGATCGAGTTTACATT | 59.991 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
13 | 14 | 2.569853 | TGGGTGTGGATCGAGTTTACAT | 59.430 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
14 | 15 | 1.972075 | TGGGTGTGGATCGAGTTTACA | 59.028 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
15 | 16 | 2.754946 | TGGGTGTGGATCGAGTTTAC | 57.245 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
17 | 18 | 2.504367 | CTTTGGGTGTGGATCGAGTTT | 58.496 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
18 | 19 | 1.271379 | CCTTTGGGTGTGGATCGAGTT | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
23 | 26 | 2.562738 | CCTTTTCCTTTGGGTGTGGATC | 59.437 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
31 | 34 | 5.679601 | TGAAATTTGTCCTTTTCCTTTGGG | 58.320 | 37.500 | 0.00 | 0.00 | 32.14 | 4.12 |
34 | 37 | 7.201723 | GCACAATGAAATTTGTCCTTTTCCTTT | 60.202 | 33.333 | 0.00 | 0.00 | 37.73 | 3.11 |
60 | 63 | 5.393461 | GGGCTCTTTCAAATGTGATGTTAGG | 60.393 | 44.000 | 0.00 | 0.00 | 32.48 | 2.69 |
61 | 64 | 5.416952 | AGGGCTCTTTCAAATGTGATGTTAG | 59.583 | 40.000 | 0.00 | 0.00 | 32.48 | 2.34 |
62 | 65 | 5.183713 | CAGGGCTCTTTCAAATGTGATGTTA | 59.816 | 40.000 | 0.00 | 0.00 | 32.48 | 2.41 |
65 | 68 | 3.675228 | GCAGGGCTCTTTCAAATGTGATG | 60.675 | 47.826 | 0.00 | 0.00 | 32.48 | 3.07 |
74 | 77 | 0.620030 | TGCATAGCAGGGCTCTTTCA | 59.380 | 50.000 | 0.00 | 0.00 | 40.44 | 2.69 |
80 | 83 | 1.072965 | GAGGTTATGCATAGCAGGGCT | 59.927 | 52.381 | 20.40 | 9.34 | 43.65 | 5.19 |
81 | 84 | 1.528129 | GAGGTTATGCATAGCAGGGC | 58.472 | 55.000 | 20.40 | 4.92 | 43.65 | 5.19 |
82 | 85 | 1.421268 | TGGAGGTTATGCATAGCAGGG | 59.579 | 52.381 | 20.40 | 0.00 | 43.65 | 4.45 |
112 | 119 | 6.894654 | ACATTCCCAATGATGGTGTTGTATAA | 59.105 | 34.615 | 3.24 | 0.00 | 46.01 | 0.98 |
155 | 167 | 6.468956 | GGTGTATCGTATTCAGTGCAAATTTG | 59.531 | 38.462 | 14.03 | 14.03 | 0.00 | 2.32 |
164 | 179 | 5.453339 | CCAATGGAGGTGTATCGTATTCAGT | 60.453 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
201 | 216 | 6.348540 | GCTAAATCCAATGGTCGGATGTATTC | 60.349 | 42.308 | 0.00 | 0.00 | 42.62 | 1.75 |
203 | 218 | 5.003804 | GCTAAATCCAATGGTCGGATGTAT | 58.996 | 41.667 | 0.00 | 0.00 | 42.62 | 2.29 |
259 | 275 | 1.795872 | TGAATGTCAAACTACCGTGCG | 59.204 | 47.619 | 0.00 | 0.00 | 0.00 | 5.34 |
307 | 495 | 2.187707 | GACAAACATGATGCGAATGGC | 58.812 | 47.619 | 0.00 | 0.00 | 43.96 | 4.40 |
314 | 502 | 6.790285 | AATTGAAAAGGACAAACATGATGC | 57.210 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
333 | 521 | 5.626543 | CCACACTTCGTCAATCAAGAAATTG | 59.373 | 40.000 | 0.00 | 0.00 | 37.87 | 2.32 |
334 | 522 | 5.530915 | TCCACACTTCGTCAATCAAGAAATT | 59.469 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
348 | 536 | 7.596749 | ACTACAAGATTTAATCCACACTTCG | 57.403 | 36.000 | 0.78 | 0.00 | 0.00 | 3.79 |
368 | 558 | 6.973474 | GTCACTATGTGTCTGATTGGTACTAC | 59.027 | 42.308 | 0.00 | 0.00 | 34.79 | 2.73 |
369 | 559 | 6.661805 | TGTCACTATGTGTCTGATTGGTACTA | 59.338 | 38.462 | 0.00 | 0.00 | 34.79 | 1.82 |
370 | 560 | 5.480422 | TGTCACTATGTGTCTGATTGGTACT | 59.520 | 40.000 | 0.00 | 0.00 | 34.79 | 2.73 |
425 | 615 | 5.608449 | GGTCTACACCAATATTCTACCACC | 58.392 | 45.833 | 0.00 | 0.00 | 43.17 | 4.61 |
475 | 672 | 1.676529 | TGACTGCGTCTATGGCTCTAC | 59.323 | 52.381 | 9.49 | 0.00 | 33.15 | 2.59 |
507 | 704 | 2.165301 | GGACGGACGCGGATTTCTG | 61.165 | 63.158 | 12.47 | 6.37 | 0.00 | 3.02 |
521 | 718 | 0.032130 | AACGATGATCGGGATGGACG | 59.968 | 55.000 | 19.82 | 0.00 | 45.59 | 4.79 |
537 | 734 | 5.366829 | AAATTTTTAGTCGGGAGGAAACG | 57.633 | 39.130 | 0.00 | 0.00 | 0.00 | 3.60 |
547 | 744 | 3.754850 | ACGGAGGGGAAAATTTTTAGTCG | 59.245 | 43.478 | 4.63 | 7.60 | 0.00 | 4.18 |
557 | 754 | 2.332117 | AGTAAGTGACGGAGGGGAAAA | 58.668 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
630 | 840 | 1.807142 | GCTCAGAAACAGTAGCCCAAC | 59.193 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
645 | 855 | 3.242543 | CGGGATTTTGAAAGATCGCTCAG | 60.243 | 47.826 | 8.38 | 0.00 | 34.24 | 3.35 |
646 | 856 | 2.677836 | CGGGATTTTGAAAGATCGCTCA | 59.322 | 45.455 | 8.38 | 0.00 | 34.24 | 4.26 |
651 | 861 | 6.013842 | AGTTTCACGGGATTTTGAAAGATC | 57.986 | 37.500 | 0.00 | 0.00 | 41.29 | 2.75 |
729 | 2698 | 2.442272 | TAGTGGCCTCCTCCTCGC | 60.442 | 66.667 | 3.32 | 0.00 | 0.00 | 5.03 |
840 | 2811 | 0.727398 | GAATTCTTGCTTCCGTCCGG | 59.273 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
958 | 2929 | 4.678743 | GCCCACCACCCACCTTCC | 62.679 | 72.222 | 0.00 | 0.00 | 0.00 | 3.46 |
1189 | 3165 | 1.076332 | CATCTTTTCCCGTCACCGAC | 58.924 | 55.000 | 0.00 | 0.00 | 35.63 | 4.79 |
1200 | 3176 | 1.578618 | CAGACGCGCGCATCTTTTC | 60.579 | 57.895 | 28.92 | 18.19 | 0.00 | 2.29 |
1225 | 3202 | 1.205064 | CGAAACTTCGTGGCAGCAG | 59.795 | 57.895 | 3.68 | 0.00 | 45.09 | 4.24 |
1246 | 3223 | 4.543590 | AAGCTATACATGATCCCCGAAG | 57.456 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
1270 | 3247 | 9.267084 | ACGCAACAACCATAAAAATAGAAAAAT | 57.733 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
1276 | 3253 | 5.344665 | CACCACGCAACAACCATAAAAATAG | 59.655 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
1277 | 3254 | 5.223382 | CACCACGCAACAACCATAAAAATA | 58.777 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
1278 | 3255 | 4.054671 | CACCACGCAACAACCATAAAAAT | 58.945 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
1279 | 3256 | 3.448686 | CACCACGCAACAACCATAAAAA | 58.551 | 40.909 | 0.00 | 0.00 | 0.00 | 1.94 |
1305 | 3283 | 1.416813 | CGAGCAAGGCTAGAACTGCG | 61.417 | 60.000 | 0.00 | 0.00 | 39.88 | 5.18 |
1334 | 3313 | 1.063972 | CAGGCACACCAACAACACG | 59.936 | 57.895 | 0.00 | 0.00 | 39.06 | 4.49 |
1370 | 3350 | 0.992072 | CCGCAGTCATGTGTTACTCG | 59.008 | 55.000 | 0.00 | 0.00 | 35.02 | 4.18 |
1388 | 3421 | 0.756815 | GGGAGGTGGGAAATGATGCC | 60.757 | 60.000 | 0.00 | 0.00 | 40.67 | 4.40 |
1401 | 3434 | 2.203938 | TTGAAGCCGAGGGGAGGT | 60.204 | 61.111 | 0.00 | 0.00 | 34.06 | 3.85 |
1440 | 3473 | 9.216117 | GAATTATCAACTGGCCGTTTATATAGT | 57.784 | 33.333 | 9.78 | 0.00 | 32.27 | 2.12 |
1456 | 3489 | 8.624776 | CATAAACTGAGAAGGGGAATTATCAAC | 58.375 | 37.037 | 0.00 | 0.00 | 30.57 | 3.18 |
1462 | 3495 | 5.892348 | ACACATAAACTGAGAAGGGGAATT | 58.108 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
1527 | 3560 | 7.473735 | TGGCAAAATCATAGTACCATTTTGA | 57.526 | 32.000 | 21.84 | 8.04 | 44.79 | 2.69 |
1554 | 3589 | 0.243636 | CCCGGAATTCTGCCACAAAC | 59.756 | 55.000 | 0.73 | 0.00 | 0.00 | 2.93 |
1588 | 3627 | 0.168128 | CCCTTCGTTCGATTGTTGCC | 59.832 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
1589 | 3628 | 1.136057 | GTCCCTTCGTTCGATTGTTGC | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
1592 | 3662 | 2.536761 | TTGTCCCTTCGTTCGATTGT | 57.463 | 45.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1593 | 3663 | 3.000041 | TGATTGTCCCTTCGTTCGATTG | 59.000 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
1595 | 3665 | 2.418746 | CCTGATTGTCCCTTCGTTCGAT | 60.419 | 50.000 | 0.00 | 0.00 | 0.00 | 3.59 |
1597 | 3667 | 1.359848 | CCTGATTGTCCCTTCGTTCG | 58.640 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1601 | 3671 | 0.107654 | GTCCCCTGATTGTCCCTTCG | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 3.79 |
1618 | 3688 | 5.703130 | GCATCTCCATAGGGACTTATTTGTC | 59.297 | 44.000 | 0.00 | 0.00 | 41.75 | 3.18 |
1619 | 3689 | 5.132648 | TGCATCTCCATAGGGACTTATTTGT | 59.867 | 40.000 | 0.00 | 0.00 | 41.75 | 2.83 |
1621 | 3691 | 5.608437 | TCTGCATCTCCATAGGGACTTATTT | 59.392 | 40.000 | 0.00 | 0.00 | 41.75 | 1.40 |
1622 | 3692 | 5.158141 | TCTGCATCTCCATAGGGACTTATT | 58.842 | 41.667 | 0.00 | 0.00 | 41.75 | 1.40 |
1623 | 3693 | 4.756564 | TCTGCATCTCCATAGGGACTTAT | 58.243 | 43.478 | 0.00 | 0.00 | 41.75 | 1.73 |
1624 | 3694 | 4.140924 | TCTCTGCATCTCCATAGGGACTTA | 60.141 | 45.833 | 0.00 | 0.00 | 41.75 | 2.24 |
1627 | 3705 | 2.603021 | TCTCTGCATCTCCATAGGGAC | 58.397 | 52.381 | 0.00 | 0.00 | 38.64 | 4.46 |
1629 | 3707 | 2.289569 | GCTTCTCTGCATCTCCATAGGG | 60.290 | 54.545 | 0.00 | 0.00 | 0.00 | 3.53 |
1652 | 3730 | 0.790814 | GCACTCTAAAGTCACACCGC | 59.209 | 55.000 | 0.00 | 0.00 | 31.71 | 5.68 |
1657 | 3735 | 3.877508 | ACAAACAGGCACTCTAAAGTCAC | 59.122 | 43.478 | 0.00 | 0.00 | 34.60 | 3.67 |
1750 | 3847 | 4.129380 | TCATATTCATGCAAAGGACCTCG | 58.871 | 43.478 | 0.00 | 0.00 | 31.73 | 4.63 |
1820 | 3917 | 8.716674 | TCCCTAGTGTATAATCGGATAACTTT | 57.283 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
1909 | 4039 | 2.579410 | AAGTACCCACACCATGAACC | 57.421 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
1925 | 4055 | 6.485648 | GCTTCCATATGTTCGGGTTAATAAGT | 59.514 | 38.462 | 1.24 | 0.00 | 0.00 | 2.24 |
1948 | 4078 | 6.830324 | ACATACAATGATGGTTGTGATTAGCT | 59.170 | 34.615 | 0.00 | 0.00 | 42.02 | 3.32 |
1958 | 4088 | 7.613022 | ACAGAAAGATGACATACAATGATGGTT | 59.387 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
1966 | 4096 | 5.497464 | TCCCACAGAAAGATGACATACAA | 57.503 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
2010 | 4140 | 2.548464 | ATGCAAATTAAGCCCTGGGA | 57.452 | 45.000 | 19.27 | 0.00 | 0.00 | 4.37 |
2011 | 4141 | 2.767960 | AGAATGCAAATTAAGCCCTGGG | 59.232 | 45.455 | 8.86 | 8.86 | 0.00 | 4.45 |
2061 | 4199 | 3.438434 | GCAAGGTGCCTTAGAAAGAAGAG | 59.562 | 47.826 | 2.81 | 0.00 | 37.42 | 2.85 |
2112 | 4254 | 5.912955 | CGAGTTTACAAAAGAACCAATCCAC | 59.087 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2129 | 4271 | 5.972935 | TGTTCAGATTATGGAGCGAGTTTA | 58.027 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
2147 | 4289 | 4.209307 | TCCGGTAAGCATAACATGTTCA | 57.791 | 40.909 | 15.85 | 2.27 | 0.00 | 3.18 |
2187 | 4329 | 9.130661 | TCAGAAATGACAAGAACAATTCCTTTA | 57.869 | 29.630 | 0.00 | 0.00 | 30.35 | 1.85 |
2504 | 4646 | 9.943163 | GGATTTCTGAAGCATAGAATCTAAAAC | 57.057 | 33.333 | 0.00 | 0.00 | 34.42 | 2.43 |
2514 | 4657 | 3.935203 | ACGTGTGGATTTCTGAAGCATAG | 59.065 | 43.478 | 0.00 | 0.00 | 0.00 | 2.23 |
2516 | 4659 | 2.783135 | ACGTGTGGATTTCTGAAGCAT | 58.217 | 42.857 | 0.00 | 0.00 | 0.00 | 3.79 |
2524 | 4667 | 4.377021 | TCATGCCTATACGTGTGGATTTC | 58.623 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
2534 | 4677 | 8.197439 | TGGATTATACAGATTCATGCCTATACG | 58.803 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
2614 | 4837 | 9.492730 | ACTCCATGGAAATAATAAAATGGAAGT | 57.507 | 29.630 | 17.00 | 0.53 | 42.15 | 3.01 |
2626 | 4849 | 8.646004 | TCAACAATTTTCACTCCATGGAAATAA | 58.354 | 29.630 | 17.00 | 7.04 | 44.54 | 1.40 |
2629 | 4852 | 6.477053 | TCAACAATTTTCACTCCATGGAAA | 57.523 | 33.333 | 17.00 | 7.11 | 40.23 | 3.13 |
2631 | 4854 | 5.774184 | TGATCAACAATTTTCACTCCATGGA | 59.226 | 36.000 | 15.27 | 15.27 | 0.00 | 3.41 |
2632 | 4855 | 5.865552 | GTGATCAACAATTTTCACTCCATGG | 59.134 | 40.000 | 4.97 | 4.97 | 36.43 | 3.66 |
2633 | 4856 | 6.364165 | GTGTGATCAACAATTTTCACTCCATG | 59.636 | 38.462 | 0.00 | 0.00 | 41.57 | 3.66 |
2634 | 4857 | 6.449698 | GTGTGATCAACAATTTTCACTCCAT | 58.550 | 36.000 | 0.00 | 0.00 | 41.57 | 3.41 |
2635 | 4858 | 5.221224 | GGTGTGATCAACAATTTTCACTCCA | 60.221 | 40.000 | 14.68 | 0.00 | 45.42 | 3.86 |
2636 | 4859 | 5.221224 | TGGTGTGATCAACAATTTTCACTCC | 60.221 | 40.000 | 13.34 | 13.34 | 45.90 | 3.85 |
2637 | 4860 | 5.830912 | TGGTGTGATCAACAATTTTCACTC | 58.169 | 37.500 | 0.00 | 0.00 | 41.57 | 3.51 |
2638 | 4861 | 5.850557 | TGGTGTGATCAACAATTTTCACT | 57.149 | 34.783 | 0.00 | 0.00 | 41.57 | 3.41 |
2639 | 4862 | 8.761575 | AATATGGTGTGATCAACAATTTTCAC | 57.238 | 30.769 | 0.00 | 0.00 | 44.84 | 3.18 |
2640 | 4863 | 9.775854 | AAAATATGGTGTGATCAACAATTTTCA | 57.224 | 25.926 | 0.00 | 0.00 | 44.84 | 2.69 |
2694 | 4917 | 0.389948 | GTACGGAACACTGGCTCAGG | 60.390 | 60.000 | 7.06 | 0.01 | 35.51 | 3.86 |
2714 | 4937 | 9.719355 | TCACTGTTTATTTGTGCTTCTATCTAA | 57.281 | 29.630 | 0.00 | 0.00 | 0.00 | 2.10 |
2723 | 4946 | 7.328277 | TGTTTAGTCACTGTTTATTTGTGCT | 57.672 | 32.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2735 | 4958 | 3.141398 | ACCATGTGCTGTTTAGTCACTG | 58.859 | 45.455 | 0.00 | 0.00 | 34.31 | 3.66 |
2799 | 5034 | 2.912956 | TGGCAGAACTCCCTAAATCACT | 59.087 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
2830 | 5065 | 6.616774 | ATTCCGAACATGCAAAAACAAATT | 57.383 | 29.167 | 0.00 | 0.00 | 0.00 | 1.82 |
2916 | 5200 | 9.330063 | TCTGACATTTGATTTATAGCGAAATCT | 57.670 | 29.630 | 17.20 | 3.27 | 43.40 | 2.40 |
2970 | 5255 | 7.036829 | TCATGACAACATAATTTGCCATCTTG | 58.963 | 34.615 | 0.00 | 0.00 | 35.09 | 3.02 |
2992 | 5277 | 5.721000 | TGTTAAAGGAAAATGCCATCCTCAT | 59.279 | 36.000 | 0.00 | 0.00 | 45.33 | 2.90 |
2993 | 5278 | 5.083122 | TGTTAAAGGAAAATGCCATCCTCA | 58.917 | 37.500 | 0.00 | 0.00 | 45.33 | 3.86 |
3004 | 5289 | 9.103861 | GGATTTGTCATGTTTGTTAAAGGAAAA | 57.896 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
3212 | 5497 | 6.726764 | ACCCCCTTAGCTATATCTCTAAACAG | 59.273 | 42.308 | 0.00 | 0.00 | 0.00 | 3.16 |
3221 | 5506 | 7.037514 | AGTCCATTAAACCCCCTTAGCTATATC | 60.038 | 40.741 | 0.00 | 0.00 | 0.00 | 1.63 |
3228 | 5513 | 8.107729 | GGATATAAGTCCATTAAACCCCCTTAG | 58.892 | 40.741 | 0.00 | 0.00 | 38.20 | 2.18 |
3303 | 5589 | 5.048013 | TGCGTGACCAGATAGATACCTAATG | 60.048 | 44.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3359 | 5645 | 7.320399 | AGCATCACATAATTGCAATGATATGG | 58.680 | 34.615 | 24.75 | 17.28 | 38.84 | 2.74 |
3365 | 5651 | 8.875803 | AGTTTTAAGCATCACATAATTGCAATG | 58.124 | 29.630 | 13.82 | 4.68 | 38.84 | 2.82 |
3393 | 5679 | 5.046910 | AGAAGCGTTGATAAATTGTGTGG | 57.953 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
3397 | 5683 | 7.593644 | GGTTGTTTAGAAGCGTTGATAAATTGT | 59.406 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
3406 | 5692 | 9.620660 | AAAATTATAGGTTGTTTAGAAGCGTTG | 57.379 | 29.630 | 0.00 | 0.00 | 0.00 | 4.10 |
3407 | 5693 | 9.620660 | CAAAATTATAGGTTGTTTAGAAGCGTT | 57.379 | 29.630 | 0.00 | 0.00 | 0.00 | 4.84 |
3408 | 5694 | 7.753580 | GCAAAATTATAGGTTGTTTAGAAGCGT | 59.246 | 33.333 | 0.00 | 0.00 | 0.00 | 5.07 |
3409 | 5695 | 7.968405 | AGCAAAATTATAGGTTGTTTAGAAGCG | 59.032 | 33.333 | 0.00 | 0.00 | 0.00 | 4.68 |
3410 | 5696 | 9.639601 | AAGCAAAATTATAGGTTGTTTAGAAGC | 57.360 | 29.630 | 0.00 | 0.00 | 0.00 | 3.86 |
3438 | 5726 | 6.640092 | GCTTCTCTGAAAAGAACAAATCCAAG | 59.360 | 38.462 | 0.00 | 0.00 | 32.03 | 3.61 |
3543 | 5831 | 7.070571 | AGCATAAGAGAAATTCTACAGCTAGGT | 59.929 | 37.037 | 0.00 | 0.00 | 35.62 | 3.08 |
3565 | 5853 | 0.317770 | CGTGGACGCAACAAAAGCAT | 60.318 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
3640 | 5928 | 2.437413 | CTTTACTCCCAGCCAGTTTCC | 58.563 | 52.381 | 0.00 | 0.00 | 0.00 | 3.13 |
3684 | 6023 | 0.467804 | TCCTGCACACACTTGCTACA | 59.532 | 50.000 | 0.00 | 0.00 | 43.41 | 2.74 |
3685 | 6024 | 1.151668 | CTCCTGCACACACTTGCTAC | 58.848 | 55.000 | 0.00 | 0.00 | 43.41 | 3.58 |
3686 | 6025 | 0.758734 | ACTCCTGCACACACTTGCTA | 59.241 | 50.000 | 0.00 | 0.00 | 43.41 | 3.49 |
3687 | 6026 | 0.533755 | GACTCCTGCACACACTTGCT | 60.534 | 55.000 | 0.00 | 0.00 | 43.41 | 3.91 |
3688 | 6027 | 0.815213 | TGACTCCTGCACACACTTGC | 60.815 | 55.000 | 0.00 | 0.00 | 43.31 | 4.01 |
3689 | 6028 | 1.600957 | CTTGACTCCTGCACACACTTG | 59.399 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
3690 | 6029 | 1.475751 | CCTTGACTCCTGCACACACTT | 60.476 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
3691 | 6030 | 0.107456 | CCTTGACTCCTGCACACACT | 59.893 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3692 | 6031 | 0.106708 | TCCTTGACTCCTGCACACAC | 59.893 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
3876 | 6215 | 5.738909 | AGTGATTCTTTCAGGTACCAGATG | 58.261 | 41.667 | 15.94 | 3.74 | 34.17 | 2.90 |
3880 | 6219 | 7.060421 | AGAAAAAGTGATTCTTTCAGGTACCA | 58.940 | 34.615 | 15.94 | 0.00 | 44.50 | 3.25 |
3892 | 6231 | 5.063564 | CGTGCTACCCTAGAAAAAGTGATTC | 59.936 | 44.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3894 | 6233 | 4.222145 | TCGTGCTACCCTAGAAAAAGTGAT | 59.778 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
3947 | 6295 | 3.255888 | CACTCATATACGGCTAGGCTTCA | 59.744 | 47.826 | 15.11 | 0.00 | 0.00 | 3.02 |
3954 | 6302 | 2.557056 | GGCTCACACTCATATACGGCTA | 59.443 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
3961 | 6309 | 3.708121 | TCATCACTGGCTCACACTCATAT | 59.292 | 43.478 | 0.00 | 0.00 | 0.00 | 1.78 |
3970 | 6318 | 4.089361 | TCTTCTACTTCATCACTGGCTCA | 58.911 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
3997 | 6345 | 1.605712 | GCTCACACTCATATACGGCCC | 60.606 | 57.143 | 0.00 | 0.00 | 0.00 | 5.80 |
3999 | 6347 | 1.068588 | TGGCTCACACTCATATACGGC | 59.931 | 52.381 | 0.00 | 0.00 | 0.00 | 5.68 |
4000 | 6348 | 2.362397 | ACTGGCTCACACTCATATACGG | 59.638 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4001 | 6349 | 3.066760 | TCACTGGCTCACACTCATATACG | 59.933 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
4002 | 6350 | 4.655762 | TCACTGGCTCACACTCATATAC | 57.344 | 45.455 | 0.00 | 0.00 | 0.00 | 1.47 |
4003 | 6351 | 4.895297 | TCATCACTGGCTCACACTCATATA | 59.105 | 41.667 | 0.00 | 0.00 | 0.00 | 0.86 |
4005 | 6353 | 3.099141 | TCATCACTGGCTCACACTCATA | 58.901 | 45.455 | 0.00 | 0.00 | 0.00 | 2.15 |
4006 | 6354 | 1.904537 | TCATCACTGGCTCACACTCAT | 59.095 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
4007 | 6355 | 1.341080 | TCATCACTGGCTCACACTCA | 58.659 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4008 | 6356 | 2.289320 | ACTTCATCACTGGCTCACACTC | 60.289 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4009 | 6357 | 1.696336 | ACTTCATCACTGGCTCACACT | 59.304 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
4010 | 6358 | 2.175878 | ACTTCATCACTGGCTCACAC | 57.824 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
4011 | 6359 | 3.165071 | TCTACTTCATCACTGGCTCACA | 58.835 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
4012 | 6360 | 3.876274 | TCTACTTCATCACTGGCTCAC | 57.124 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
4033 | 6400 | 3.333680 | TGCTTATTTTCAACCCTCCCTCT | 59.666 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
4034 | 6401 | 3.444034 | GTGCTTATTTTCAACCCTCCCTC | 59.556 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
4035 | 6402 | 3.431415 | GTGCTTATTTTCAACCCTCCCT | 58.569 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
4036 | 6403 | 2.496070 | GGTGCTTATTTTCAACCCTCCC | 59.504 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4037 | 6404 | 2.163613 | CGGTGCTTATTTTCAACCCTCC | 59.836 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4038 | 6405 | 2.415491 | GCGGTGCTTATTTTCAACCCTC | 60.415 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4039 | 6406 | 1.544246 | GCGGTGCTTATTTTCAACCCT | 59.456 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
4040 | 6407 | 1.271102 | TGCGGTGCTTATTTTCAACCC | 59.729 | 47.619 | 0.00 | 0.00 | 0.00 | 4.11 |
4041 | 6408 | 2.324860 | GTGCGGTGCTTATTTTCAACC | 58.675 | 47.619 | 0.00 | 0.00 | 0.00 | 3.77 |
4042 | 6409 | 1.976045 | CGTGCGGTGCTTATTTTCAAC | 59.024 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
4043 | 6410 | 1.874231 | TCGTGCGGTGCTTATTTTCAA | 59.126 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
4044 | 6411 | 1.195900 | GTCGTGCGGTGCTTATTTTCA | 59.804 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
4045 | 6412 | 1.785518 | CGTCGTGCGGTGCTTATTTTC | 60.786 | 52.381 | 0.00 | 0.00 | 36.85 | 2.29 |
4046 | 6413 | 0.165079 | CGTCGTGCGGTGCTTATTTT | 59.835 | 50.000 | 0.00 | 0.00 | 36.85 | 1.82 |
4047 | 6414 | 0.668096 | TCGTCGTGCGGTGCTTATTT | 60.668 | 50.000 | 0.00 | 0.00 | 41.72 | 1.40 |
4048 | 6415 | 1.076533 | CTCGTCGTGCGGTGCTTATT | 61.077 | 55.000 | 0.00 | 0.00 | 41.72 | 1.40 |
4049 | 6416 | 1.516386 | CTCGTCGTGCGGTGCTTAT | 60.516 | 57.895 | 0.00 | 0.00 | 41.72 | 1.73 |
4050 | 6417 | 2.126618 | CTCGTCGTGCGGTGCTTA | 60.127 | 61.111 | 0.00 | 0.00 | 41.72 | 3.09 |
4059 | 6426 | 3.669036 | CTCAGTCCCGCTCGTCGTG | 62.669 | 68.421 | 0.00 | 0.00 | 36.19 | 4.35 |
4060 | 6427 | 3.432588 | CTCAGTCCCGCTCGTCGT | 61.433 | 66.667 | 0.00 | 0.00 | 36.19 | 4.34 |
4061 | 6428 | 3.432588 | ACTCAGTCCCGCTCGTCG | 61.433 | 66.667 | 0.00 | 0.00 | 38.08 | 5.12 |
4062 | 6429 | 1.658686 | ATCACTCAGTCCCGCTCGTC | 61.659 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4063 | 6430 | 1.679305 | ATCACTCAGTCCCGCTCGT | 60.679 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
4064 | 6431 | 1.226802 | CATCACTCAGTCCCGCTCG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 5.03 |
4065 | 6432 | 0.532573 | TTCATCACTCAGTCCCGCTC | 59.467 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
4066 | 6433 | 0.534412 | CTTCATCACTCAGTCCCGCT | 59.466 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
4067 | 6434 | 0.532573 | TCTTCATCACTCAGTCCCGC | 59.467 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
4068 | 6435 | 2.493675 | TCTTCTTCATCACTCAGTCCCG | 59.506 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
4069 | 6436 | 3.118811 | CCTCTTCTTCATCACTCAGTCCC | 60.119 | 52.174 | 0.00 | 0.00 | 0.00 | 4.46 |
4070 | 6437 | 3.118811 | CCCTCTTCTTCATCACTCAGTCC | 60.119 | 52.174 | 0.00 | 0.00 | 0.00 | 3.85 |
4071 | 6438 | 3.118811 | CCCCTCTTCTTCATCACTCAGTC | 60.119 | 52.174 | 0.00 | 0.00 | 0.00 | 3.51 |
4072 | 6439 | 2.836981 | CCCCTCTTCTTCATCACTCAGT | 59.163 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4073 | 6440 | 2.170187 | CCCCCTCTTCTTCATCACTCAG | 59.830 | 54.545 | 0.00 | 0.00 | 0.00 | 3.35 |
4074 | 6441 | 2.191400 | CCCCCTCTTCTTCATCACTCA | 58.809 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
4075 | 6442 | 2.192263 | ACCCCCTCTTCTTCATCACTC | 58.808 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
4076 | 6443 | 2.307098 | CAACCCCCTCTTCTTCATCACT | 59.693 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4077 | 6444 | 2.305927 | TCAACCCCCTCTTCTTCATCAC | 59.694 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4078 | 6445 | 2.631384 | TCAACCCCCTCTTCTTCATCA | 58.369 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
4079 | 6446 | 3.264450 | TCTTCAACCCCCTCTTCTTCATC | 59.736 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
4080 | 6447 | 3.260205 | TCTTCAACCCCCTCTTCTTCAT | 58.740 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
4081 | 6448 | 2.701551 | TCTTCAACCCCCTCTTCTTCA | 58.298 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
4082 | 6449 | 3.264450 | TCATCTTCAACCCCCTCTTCTTC | 59.736 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
4083 | 6450 | 3.260205 | TCATCTTCAACCCCCTCTTCTT | 58.740 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
4084 | 6451 | 2.921221 | TCATCTTCAACCCCCTCTTCT | 58.079 | 47.619 | 0.00 | 0.00 | 0.00 | 2.85 |
4085 | 6452 | 3.244911 | TGTTCATCTTCAACCCCCTCTTC | 60.245 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
4086 | 6453 | 2.716424 | TGTTCATCTTCAACCCCCTCTT | 59.284 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
4087 | 6454 | 2.307098 | CTGTTCATCTTCAACCCCCTCT | 59.693 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
4088 | 6455 | 2.040412 | ACTGTTCATCTTCAACCCCCTC | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4089 | 6456 | 2.065799 | ACTGTTCATCTTCAACCCCCT | 58.934 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
4108 | 6475 | 3.715628 | AGTCAAAAACAGACCATGCAC | 57.284 | 42.857 | 0.00 | 0.00 | 36.68 | 4.57 |
4113 | 6480 | 4.249661 | GCCAAAAAGTCAAAAACAGACCA | 58.750 | 39.130 | 0.00 | 0.00 | 36.68 | 4.02 |
4115 | 6482 | 4.249661 | TGGCCAAAAAGTCAAAAACAGAC | 58.750 | 39.130 | 0.61 | 0.00 | 36.26 | 3.51 |
4124 | 6491 | 5.941058 | TCTTTATCGTATGGCCAAAAAGTCA | 59.059 | 36.000 | 10.96 | 0.00 | 0.00 | 3.41 |
4132 | 6508 | 5.466819 | CGTTAGATCTTTATCGTATGGCCA | 58.533 | 41.667 | 8.56 | 8.56 | 37.19 | 5.36 |
4144 | 6520 | 8.101419 | ACTTTTAATCAGGACCGTTAGATCTTT | 58.899 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
4155 | 6531 | 5.305585 | TCACTGTCACTTTTAATCAGGACC | 58.694 | 41.667 | 0.00 | 0.00 | 0.00 | 4.46 |
4165 | 6541 | 2.017049 | GCACCACTCACTGTCACTTTT | 58.983 | 47.619 | 0.00 | 0.00 | 0.00 | 2.27 |
4168 | 6544 | 0.541392 | TTGCACCACTCACTGTCACT | 59.459 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4169 | 6545 | 1.378531 | TTTGCACCACTCACTGTCAC | 58.621 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4170 | 6546 | 2.346766 | ATTTGCACCACTCACTGTCA | 57.653 | 45.000 | 0.00 | 0.00 | 0.00 | 3.58 |
4171 | 6547 | 4.829064 | TTTATTTGCACCACTCACTGTC | 57.171 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
4172 | 6548 | 5.590530 | TTTTTATTTGCACCACTCACTGT | 57.409 | 34.783 | 0.00 | 0.00 | 0.00 | 3.55 |
4173 | 6549 | 6.146021 | GGAATTTTTATTTGCACCACTCACTG | 59.854 | 38.462 | 0.00 | 0.00 | 0.00 | 3.66 |
4174 | 6550 | 6.183360 | TGGAATTTTTATTTGCACCACTCACT | 60.183 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
4175 | 6551 | 5.988561 | TGGAATTTTTATTTGCACCACTCAC | 59.011 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4176 | 6552 | 6.166984 | TGGAATTTTTATTTGCACCACTCA | 57.833 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
4177 | 6553 | 5.639082 | CCTGGAATTTTTATTTGCACCACTC | 59.361 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4178 | 6554 | 5.071653 | ACCTGGAATTTTTATTTGCACCACT | 59.928 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4179 | 6555 | 5.179182 | CACCTGGAATTTTTATTTGCACCAC | 59.821 | 40.000 | 0.00 | 0.00 | 0.00 | 4.16 |
4180 | 6556 | 5.303971 | CACCTGGAATTTTTATTTGCACCA | 58.696 | 37.500 | 0.00 | 0.00 | 0.00 | 4.17 |
4181 | 6557 | 4.154015 | GCACCTGGAATTTTTATTTGCACC | 59.846 | 41.667 | 0.00 | 0.00 | 0.00 | 5.01 |
4182 | 6558 | 4.154015 | GGCACCTGGAATTTTTATTTGCAC | 59.846 | 41.667 | 0.00 | 0.00 | 0.00 | 4.57 |
4183 | 6559 | 4.041444 | AGGCACCTGGAATTTTTATTTGCA | 59.959 | 37.500 | 0.00 | 0.00 | 0.00 | 4.08 |
4184 | 6560 | 4.392754 | CAGGCACCTGGAATTTTTATTTGC | 59.607 | 41.667 | 8.93 | 0.00 | 40.17 | 3.68 |
4185 | 6561 | 5.792741 | TCAGGCACCTGGAATTTTTATTTG | 58.207 | 37.500 | 16.52 | 0.00 | 43.75 | 2.32 |
4186 | 6562 | 6.013466 | ACATCAGGCACCTGGAATTTTTATTT | 60.013 | 34.615 | 16.52 | 0.00 | 43.75 | 1.40 |
4187 | 6563 | 5.484998 | ACATCAGGCACCTGGAATTTTTATT | 59.515 | 36.000 | 16.52 | 0.00 | 43.75 | 1.40 |
4197 | 6573 | 1.417517 | TGCTATACATCAGGCACCTGG | 59.582 | 52.381 | 16.52 | 4.25 | 43.75 | 4.45 |
4209 | 6585 | 4.999310 | AGGAGCACCTATACTGCTATACA | 58.001 | 43.478 | 0.00 | 0.00 | 45.23 | 2.29 |
4231 | 6607 | 7.185318 | TCCGAACAAAGGGAGTGTATAAATA | 57.815 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4239 | 6615 | 4.760204 | AGTTATTTCCGAACAAAGGGAGTG | 59.240 | 41.667 | 0.00 | 0.00 | 33.01 | 3.51 |
4246 | 6622 | 2.879646 | ACGCCAGTTATTTCCGAACAAA | 59.120 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
4265 | 6642 | 8.322428 | GTGGTTTTAGTTTAAATTTGAACCACG | 58.678 | 33.333 | 26.50 | 0.00 | 41.13 | 4.94 |
4291 | 6668 | 4.634443 | ACCTCCTTTCGAAAATAACCGATG | 59.366 | 41.667 | 12.41 | 0.00 | 34.58 | 3.84 |
4308 | 6685 | 6.213600 | CCCAAGCTACATACATATTACCTCCT | 59.786 | 42.308 | 0.00 | 0.00 | 0.00 | 3.69 |
4339 | 6716 | 7.245604 | TCTTTTTAAAACAAGAACAGACGACC | 58.754 | 34.615 | 0.00 | 0.00 | 0.00 | 4.79 |
4340 | 6717 | 8.663771 | TTCTTTTTAAAACAAGAACAGACGAC | 57.336 | 30.769 | 9.89 | 0.00 | 34.71 | 4.34 |
4342 | 6719 | 8.889849 | TCTTCTTTTTAAAACAAGAACAGACG | 57.110 | 30.769 | 14.90 | 6.45 | 34.71 | 4.18 |
4346 | 6723 | 9.855021 | CCTCTTCTTCTTTTTAAAACAAGAACA | 57.145 | 29.630 | 20.59 | 14.38 | 34.71 | 3.18 |
4351 | 6728 | 6.407639 | GGGCCCTCTTCTTCTTTTTAAAACAA | 60.408 | 38.462 | 17.04 | 0.00 | 0.00 | 2.83 |
4362 | 6739 | 4.490266 | GAGGGGCCCTCTTCTTCT | 57.510 | 61.111 | 39.79 | 11.24 | 46.41 | 2.85 |
4385 | 6762 | 7.703058 | TCACTTTCTTTGTTTCCTCTCTTTT | 57.297 | 32.000 | 0.00 | 0.00 | 0.00 | 2.27 |
4469 | 6850 | 1.742880 | CACGGGAGCACAGTCATGG | 60.743 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
4484 | 6867 | 1.864711 | CCACACAAACTCCACTACACG | 59.135 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
4486 | 6869 | 1.476110 | GGCCACACAAACTCCACTACA | 60.476 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.