Multiple sequence alignment - TraesCS6A01G302300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G302300 chr6A 100.000 4485 0 0 1 4485 535981091 535976607 0.000000e+00 8283.0
1 TraesCS6A01G302300 chr6A 83.122 237 35 5 24 258 544214324 544214557 1.260000e-50 211.0
2 TraesCS6A01G302300 chr6A 88.312 77 9 0 1863 1939 424798817 424798893 4.780000e-15 93.5
3 TraesCS6A01G302300 chr6B 92.457 3911 147 54 682 4485 582828548 582824679 0.000000e+00 5452.0
4 TraesCS6A01G302300 chr6B 85.532 235 29 4 35 266 482470027 482469795 1.610000e-59 241.0
5 TraesCS6A01G302300 chr6D 92.070 3884 168 53 671 4485 389587074 389583262 0.000000e+00 5337.0
6 TraesCS6A01G302300 chr6D 82.793 401 43 16 268 644 38242742 38242344 7.190000e-88 335.0
7 TraesCS6A01G302300 chr6D 86.017 236 26 7 35 266 337846661 337846893 3.470000e-61 246.0
8 TraesCS6A01G302300 chr7B 77.981 822 129 39 1865 2654 99629945 99630746 6.790000e-128 468.0
9 TraesCS6A01G302300 chr7A 77.482 826 123 47 1865 2654 136173147 136172349 1.920000e-118 436.0
10 TraesCS6A01G302300 chr7A 88.235 204 20 4 268 470 637692769 637692569 1.610000e-59 241.0
11 TraesCS6A01G302300 chr7D 77.317 820 126 46 1865 2654 136471543 136470754 3.210000e-116 429.0
12 TraesCS6A01G302300 chr7D 83.051 236 34 6 34 266 99187693 99187461 4.550000e-50 209.0
13 TraesCS6A01G302300 chr5D 82.878 403 35 20 268 641 207253334 207252937 9.300000e-87 331.0
14 TraesCS6A01G302300 chr5D 81.921 354 34 23 268 593 463266565 463266916 5.720000e-69 272.0
15 TraesCS6A01G302300 chr5A 83.378 373 44 16 272 640 563769059 563769417 3.340000e-86 329.0
16 TraesCS6A01G302300 chr1B 82.587 402 43 16 268 644 159629406 159629805 3.340000e-86 329.0
17 TraesCS6A01G302300 chr1B 82.310 407 39 21 268 645 1944165 1943763 5.600000e-84 322.0
18 TraesCS6A01G302300 chr3B 81.436 404 46 16 268 649 814553376 814552980 2.030000e-78 303.0
19 TraesCS6A01G302300 chr3B 82.833 233 37 3 35 266 13457211 13456981 5.880000e-49 206.0
20 TraesCS6A01G302300 chr2A 80.798 401 47 15 268 640 675100952 675100554 2.040000e-73 287.0
21 TraesCS6A01G302300 chr4A 84.716 229 26 9 35 260 153257686 153257908 2.100000e-53 220.0
22 TraesCS6A01G302300 chr4B 83.404 235 33 6 35 266 400701372 400701603 3.510000e-51 213.0
23 TraesCS6A01G302300 chr2B 83.190 232 35 4 37 267 609961615 609961387 4.550000e-50 209.0
24 TraesCS6A01G302300 chr4D 82.979 235 32 8 35 266 320026856 320026627 5.880000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G302300 chr6A 535976607 535981091 4484 True 8283 8283 100.000 1 4485 1 chr6A.!!$R1 4484
1 TraesCS6A01G302300 chr6B 582824679 582828548 3869 True 5452 5452 92.457 682 4485 1 chr6B.!!$R2 3803
2 TraesCS6A01G302300 chr6D 389583262 389587074 3812 True 5337 5337 92.070 671 4485 1 chr6D.!!$R2 3814
3 TraesCS6A01G302300 chr7B 99629945 99630746 801 False 468 468 77.981 1865 2654 1 chr7B.!!$F1 789
4 TraesCS6A01G302300 chr7A 136172349 136173147 798 True 436 436 77.482 1865 2654 1 chr7A.!!$R1 789
5 TraesCS6A01G302300 chr7D 136470754 136471543 789 True 429 429 77.317 1865 2654 1 chr7D.!!$R2 789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 210 0.031515 TGGGGCTTTCTATCCTCGGA 60.032 55.0 0.00 0.0 0.00 4.55 F
627 628 0.035725 TGAGTCGCCTTAGAGACGGA 60.036 55.0 0.00 0.0 46.37 4.69 F
635 636 0.107312 CTTAGAGACGGACCGAGGGA 60.107 60.0 23.38 0.0 0.00 4.20 F
1575 1616 0.244450 CACGCGGGAGTACAGGTAAA 59.756 55.0 12.47 0.0 0.00 2.01 F
2296 2382 0.032217 CTCCTGCTCCTCTTCCTCCT 60.032 60.0 0.00 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1422 1444 0.102300 TGGATCACCACGAGCATACG 59.898 55.000 0.00 0.00 41.77 3.06 R
1477 1515 1.019673 GCAATGCCGATCTGTGACAT 58.980 50.000 0.00 0.00 0.00 3.06 R
1628 1672 1.066152 TCATCTCGACAAGATCAGCCG 59.934 52.381 0.00 0.00 43.13 5.52 R
2962 3102 0.391661 TCTTGTCAGCCGGCAGAATC 60.392 55.000 31.54 15.84 0.00 2.52 R
3942 4112 0.759060 GCCCCCTTGTGACCTTGTTT 60.759 55.000 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.796764 CTCCCTCCCAGAGCAAATC 57.203 57.895 0.00 0.00 0.00 2.17
23 24 0.179062 CTCCCTCCCAGAGCAAATCG 60.179 60.000 0.00 0.00 0.00 3.34
24 25 0.617535 TCCCTCCCAGAGCAAATCGA 60.618 55.000 0.00 0.00 0.00 3.59
25 26 0.462759 CCCTCCCAGAGCAAATCGAC 60.463 60.000 0.00 0.00 0.00 4.20
26 27 0.539051 CCTCCCAGAGCAAATCGACT 59.461 55.000 0.00 0.00 0.00 4.18
27 28 1.065854 CCTCCCAGAGCAAATCGACTT 60.066 52.381 0.00 0.00 0.00 3.01
28 29 2.275318 CTCCCAGAGCAAATCGACTTC 58.725 52.381 0.00 0.00 0.00 3.01
29 30 1.902508 TCCCAGAGCAAATCGACTTCT 59.097 47.619 0.00 0.00 0.00 2.85
30 31 2.303022 TCCCAGAGCAAATCGACTTCTT 59.697 45.455 0.00 0.00 0.00 2.52
31 32 2.675348 CCCAGAGCAAATCGACTTCTTC 59.325 50.000 0.00 0.00 0.00 2.87
32 33 3.594134 CCAGAGCAAATCGACTTCTTCT 58.406 45.455 0.00 0.00 0.00 2.85
33 34 3.616379 CCAGAGCAAATCGACTTCTTCTC 59.384 47.826 0.00 0.00 0.00 2.87
34 35 3.302964 CAGAGCAAATCGACTTCTTCTCG 59.697 47.826 0.00 0.00 0.00 4.04
35 36 3.057174 AGAGCAAATCGACTTCTTCTCGT 60.057 43.478 0.00 0.00 32.77 4.18
36 37 3.654414 AGCAAATCGACTTCTTCTCGTT 58.346 40.909 0.00 0.00 32.77 3.85
37 38 4.058817 AGCAAATCGACTTCTTCTCGTTT 58.941 39.130 0.00 0.00 32.77 3.60
38 39 4.511826 AGCAAATCGACTTCTTCTCGTTTT 59.488 37.500 0.00 0.00 34.79 2.43
39 40 4.841306 GCAAATCGACTTCTTCTCGTTTTC 59.159 41.667 0.00 0.00 33.09 2.29
40 41 5.374898 CAAATCGACTTCTTCTCGTTTTCC 58.625 41.667 0.00 0.00 33.09 3.13
41 42 4.522722 ATCGACTTCTTCTCGTTTTCCT 57.477 40.909 0.00 0.00 32.77 3.36
42 43 4.317671 TCGACTTCTTCTCGTTTTCCTT 57.682 40.909 0.00 0.00 32.77 3.36
43 44 4.296690 TCGACTTCTTCTCGTTTTCCTTC 58.703 43.478 0.00 0.00 32.77 3.46
44 45 3.429207 CGACTTCTTCTCGTTTTCCTTCC 59.571 47.826 0.00 0.00 0.00 3.46
45 46 3.741249 ACTTCTTCTCGTTTTCCTTCCC 58.259 45.455 0.00 0.00 0.00 3.97
46 47 3.391626 ACTTCTTCTCGTTTTCCTTCCCT 59.608 43.478 0.00 0.00 0.00 4.20
47 48 4.591924 ACTTCTTCTCGTTTTCCTTCCCTA 59.408 41.667 0.00 0.00 0.00 3.53
48 49 5.071384 ACTTCTTCTCGTTTTCCTTCCCTAA 59.929 40.000 0.00 0.00 0.00 2.69
49 50 4.891260 TCTTCTCGTTTTCCTTCCCTAAC 58.109 43.478 0.00 0.00 0.00 2.34
50 51 3.690475 TCTCGTTTTCCTTCCCTAACC 57.310 47.619 0.00 0.00 0.00 2.85
51 52 2.303890 TCTCGTTTTCCTTCCCTAACCC 59.696 50.000 0.00 0.00 0.00 4.11
52 53 2.305052 CTCGTTTTCCTTCCCTAACCCT 59.695 50.000 0.00 0.00 0.00 4.34
53 54 3.516700 CTCGTTTTCCTTCCCTAACCCTA 59.483 47.826 0.00 0.00 0.00 3.53
54 55 3.516700 TCGTTTTCCTTCCCTAACCCTAG 59.483 47.826 0.00 0.00 0.00 3.02
55 56 3.370209 CGTTTTCCTTCCCTAACCCTAGG 60.370 52.174 0.06 0.06 44.10 3.02
56 57 3.590432 TTTCCTTCCCTAACCCTAGGT 57.410 47.619 8.29 0.00 43.08 3.08
57 58 2.563039 TCCTTCCCTAACCCTAGGTG 57.437 55.000 8.29 1.63 43.08 4.00
58 59 1.009183 TCCTTCCCTAACCCTAGGTGG 59.991 57.143 8.29 4.32 43.08 4.61
59 60 0.837940 CTTCCCTAACCCTAGGTGGC 59.162 60.000 8.29 0.00 43.08 5.01
60 61 0.420272 TTCCCTAACCCTAGGTGGCT 59.580 55.000 8.29 0.00 43.08 4.75
61 62 1.321978 TCCCTAACCCTAGGTGGCTA 58.678 55.000 8.29 0.00 43.08 3.93
62 63 1.219724 TCCCTAACCCTAGGTGGCTAG 59.780 57.143 8.29 2.74 43.08 3.42
63 64 1.718280 CCTAACCCTAGGTGGCTAGG 58.282 60.000 8.29 7.99 44.58 3.02
72 73 4.762289 CTAGGTGGCTAGGACAAATTCT 57.238 45.455 0.00 0.00 0.00 2.40
73 74 5.104259 CTAGGTGGCTAGGACAAATTCTT 57.896 43.478 0.00 0.00 0.00 2.52
74 75 3.956744 AGGTGGCTAGGACAAATTCTTC 58.043 45.455 0.00 0.00 0.00 2.87
75 76 3.589288 AGGTGGCTAGGACAAATTCTTCT 59.411 43.478 0.00 0.00 0.00 2.85
76 77 4.783227 AGGTGGCTAGGACAAATTCTTCTA 59.217 41.667 0.00 0.00 0.00 2.10
77 78 5.430089 AGGTGGCTAGGACAAATTCTTCTAT 59.570 40.000 0.00 0.00 0.00 1.98
78 79 5.760743 GGTGGCTAGGACAAATTCTTCTATC 59.239 44.000 0.00 0.00 0.00 2.08
79 80 5.760743 GTGGCTAGGACAAATTCTTCTATCC 59.239 44.000 0.00 0.00 0.00 2.59
80 81 5.428457 TGGCTAGGACAAATTCTTCTATCCA 59.572 40.000 0.00 0.00 0.00 3.41
81 82 6.069673 TGGCTAGGACAAATTCTTCTATCCAA 60.070 38.462 0.00 0.00 0.00 3.53
82 83 6.828785 GGCTAGGACAAATTCTTCTATCCAAA 59.171 38.462 0.00 0.00 0.00 3.28
83 84 7.201741 GGCTAGGACAAATTCTTCTATCCAAAC 60.202 40.741 0.00 0.00 0.00 2.93
84 85 7.554476 GCTAGGACAAATTCTTCTATCCAAACT 59.446 37.037 0.00 0.00 0.00 2.66
85 86 9.454859 CTAGGACAAATTCTTCTATCCAAACTT 57.545 33.333 0.00 0.00 0.00 2.66
86 87 8.341892 AGGACAAATTCTTCTATCCAAACTTC 57.658 34.615 0.00 0.00 0.00 3.01
87 88 7.944554 AGGACAAATTCTTCTATCCAAACTTCA 59.055 33.333 0.00 0.00 0.00 3.02
88 89 8.239998 GGACAAATTCTTCTATCCAAACTTCAG 58.760 37.037 0.00 0.00 0.00 3.02
89 90 8.924511 ACAAATTCTTCTATCCAAACTTCAGA 57.075 30.769 0.00 0.00 0.00 3.27
90 91 8.787852 ACAAATTCTTCTATCCAAACTTCAGAC 58.212 33.333 0.00 0.00 0.00 3.51
91 92 7.602517 AATTCTTCTATCCAAACTTCAGACG 57.397 36.000 0.00 0.00 0.00 4.18
92 93 5.073311 TCTTCTATCCAAACTTCAGACGG 57.927 43.478 0.00 0.00 0.00 4.79
93 94 3.247006 TCTATCCAAACTTCAGACGGC 57.753 47.619 0.00 0.00 0.00 5.68
94 95 1.927174 CTATCCAAACTTCAGACGGCG 59.073 52.381 4.80 4.80 0.00 6.46
95 96 0.320374 ATCCAAACTTCAGACGGCGA 59.680 50.000 16.62 0.00 0.00 5.54
96 97 0.319555 TCCAAACTTCAGACGGCGAG 60.320 55.000 16.62 1.55 0.00 5.03
97 98 1.493311 CAAACTTCAGACGGCGAGC 59.507 57.895 16.62 4.95 0.00 5.03
98 99 1.668151 AAACTTCAGACGGCGAGCC 60.668 57.895 16.62 3.59 0.00 4.70
99 100 3.591254 AACTTCAGACGGCGAGCCC 62.591 63.158 16.62 0.00 0.00 5.19
111 112 4.162690 GAGCCCGTGGATTCGCCT 62.163 66.667 0.00 0.00 37.63 5.52
112 113 3.682292 GAGCCCGTGGATTCGCCTT 62.682 63.158 0.00 0.00 37.63 4.35
113 114 3.202706 GCCCGTGGATTCGCCTTC 61.203 66.667 0.00 0.00 37.63 3.46
114 115 2.513897 CCCGTGGATTCGCCTTCC 60.514 66.667 0.00 0.00 37.63 3.46
115 116 2.513897 CCGTGGATTCGCCTTCCC 60.514 66.667 0.00 0.00 37.63 3.97
116 117 2.584608 CGTGGATTCGCCTTCCCT 59.415 61.111 0.00 0.00 37.63 4.20
117 118 1.521681 CGTGGATTCGCCTTCCCTC 60.522 63.158 0.00 0.00 37.63 4.30
118 119 1.908483 GTGGATTCGCCTTCCCTCT 59.092 57.895 0.00 0.00 37.63 3.69
119 120 0.462759 GTGGATTCGCCTTCCCTCTG 60.463 60.000 0.00 0.00 37.63 3.35
120 121 1.524849 GGATTCGCCTTCCCTCTGC 60.525 63.158 0.00 0.00 0.00 4.26
121 122 1.524482 GATTCGCCTTCCCTCTGCT 59.476 57.895 0.00 0.00 0.00 4.24
122 123 0.107459 GATTCGCCTTCCCTCTGCTT 60.107 55.000 0.00 0.00 0.00 3.91
123 124 0.393537 ATTCGCCTTCCCTCTGCTTG 60.394 55.000 0.00 0.00 0.00 4.01
124 125 3.130160 CGCCTTCCCTCTGCTTGC 61.130 66.667 0.00 0.00 0.00 4.01
125 126 2.753446 GCCTTCCCTCTGCTTGCC 60.753 66.667 0.00 0.00 0.00 4.52
126 127 2.437359 CCTTCCCTCTGCTTGCCG 60.437 66.667 0.00 0.00 0.00 5.69
127 128 2.348998 CTTCCCTCTGCTTGCCGT 59.651 61.111 0.00 0.00 0.00 5.68
128 129 1.302832 CTTCCCTCTGCTTGCCGTT 60.303 57.895 0.00 0.00 0.00 4.44
129 130 0.890996 CTTCCCTCTGCTTGCCGTTT 60.891 55.000 0.00 0.00 0.00 3.60
130 131 0.467290 TTCCCTCTGCTTGCCGTTTT 60.467 50.000 0.00 0.00 0.00 2.43
131 132 0.889186 TCCCTCTGCTTGCCGTTTTC 60.889 55.000 0.00 0.00 0.00 2.29
132 133 1.207593 CCTCTGCTTGCCGTTTTCG 59.792 57.895 0.00 0.00 43.67 3.46
150 151 4.162690 GCAGCCGGTGGTAGGGAG 62.163 72.222 1.90 0.00 0.00 4.30
151 152 3.470888 CAGCCGGTGGTAGGGAGG 61.471 72.222 1.90 0.00 0.00 4.30
152 153 3.680196 AGCCGGTGGTAGGGAGGA 61.680 66.667 1.90 0.00 0.00 3.71
153 154 3.155167 GCCGGTGGTAGGGAGGAG 61.155 72.222 1.90 0.00 0.00 3.69
154 155 2.687902 CCGGTGGTAGGGAGGAGA 59.312 66.667 0.00 0.00 0.00 3.71
155 156 1.001248 CCGGTGGTAGGGAGGAGAA 59.999 63.158 0.00 0.00 0.00 2.87
156 157 0.398664 CCGGTGGTAGGGAGGAGAAT 60.399 60.000 0.00 0.00 0.00 2.40
157 158 1.041437 CGGTGGTAGGGAGGAGAATC 58.959 60.000 0.00 0.00 0.00 2.52
187 188 3.075866 CCGCTCCGGTTAGTAGTTTAG 57.924 52.381 0.00 0.00 42.73 1.85
188 189 2.223665 CCGCTCCGGTTAGTAGTTTAGG 60.224 54.545 0.00 0.00 42.73 2.69
189 190 2.424956 CGCTCCGGTTAGTAGTTTAGGT 59.575 50.000 0.00 0.00 0.00 3.08
190 191 3.119352 CGCTCCGGTTAGTAGTTTAGGTT 60.119 47.826 0.00 0.00 0.00 3.50
191 192 4.179298 GCTCCGGTTAGTAGTTTAGGTTG 58.821 47.826 0.00 0.00 0.00 3.77
192 193 4.752146 CTCCGGTTAGTAGTTTAGGTTGG 58.248 47.826 0.00 0.00 0.00 3.77
193 194 3.515104 TCCGGTTAGTAGTTTAGGTTGGG 59.485 47.826 0.00 0.00 0.00 4.12
194 195 3.369787 CCGGTTAGTAGTTTAGGTTGGGG 60.370 52.174 0.00 0.00 0.00 4.96
195 196 3.614092 GGTTAGTAGTTTAGGTTGGGGC 58.386 50.000 0.00 0.00 0.00 5.80
196 197 3.265221 GGTTAGTAGTTTAGGTTGGGGCT 59.735 47.826 0.00 0.00 0.00 5.19
197 198 4.263639 GGTTAGTAGTTTAGGTTGGGGCTT 60.264 45.833 0.00 0.00 0.00 4.35
198 199 5.319453 GTTAGTAGTTTAGGTTGGGGCTTT 58.681 41.667 0.00 0.00 0.00 3.51
199 200 4.030314 AGTAGTTTAGGTTGGGGCTTTC 57.970 45.455 0.00 0.00 0.00 2.62
200 201 3.656264 AGTAGTTTAGGTTGGGGCTTTCT 59.344 43.478 0.00 0.00 0.00 2.52
201 202 4.848086 AGTAGTTTAGGTTGGGGCTTTCTA 59.152 41.667 0.00 0.00 0.00 2.10
202 203 4.948062 AGTTTAGGTTGGGGCTTTCTAT 57.052 40.909 0.00 0.00 0.00 1.98
203 204 4.856509 AGTTTAGGTTGGGGCTTTCTATC 58.143 43.478 0.00 0.00 0.00 2.08
204 205 3.945640 TTAGGTTGGGGCTTTCTATCC 57.054 47.619 0.00 0.00 0.00 2.59
205 206 1.987080 AGGTTGGGGCTTTCTATCCT 58.013 50.000 0.00 0.00 0.00 3.24
206 207 1.847088 AGGTTGGGGCTTTCTATCCTC 59.153 52.381 0.00 0.00 0.00 3.71
207 208 1.475213 GGTTGGGGCTTTCTATCCTCG 60.475 57.143 0.00 0.00 0.00 4.63
208 209 0.837272 TTGGGGCTTTCTATCCTCGG 59.163 55.000 0.00 0.00 0.00 4.63
209 210 0.031515 TGGGGCTTTCTATCCTCGGA 60.032 55.000 0.00 0.00 0.00 4.55
210 211 0.682292 GGGGCTTTCTATCCTCGGAG 59.318 60.000 0.00 0.00 0.00 4.63
211 212 0.682292 GGGCTTTCTATCCTCGGAGG 59.318 60.000 18.25 18.25 36.46 4.30
212 213 1.415200 GGCTTTCTATCCTCGGAGGT 58.585 55.000 22.88 13.05 36.53 3.85
213 214 1.069358 GGCTTTCTATCCTCGGAGGTG 59.931 57.143 22.88 14.26 36.53 4.00
214 215 1.539280 GCTTTCTATCCTCGGAGGTGC 60.539 57.143 22.88 12.68 36.53 5.01
215 216 0.744874 TTTCTATCCTCGGAGGTGCG 59.255 55.000 22.88 12.25 36.53 5.34
216 217 1.107538 TTCTATCCTCGGAGGTGCGG 61.108 60.000 22.88 12.00 36.53 5.69
217 218 1.828660 CTATCCTCGGAGGTGCGGT 60.829 63.158 22.88 8.49 36.53 5.68
218 219 2.076622 CTATCCTCGGAGGTGCGGTG 62.077 65.000 22.88 6.01 36.53 4.94
221 222 4.803426 CTCGGAGGTGCGGTGCTC 62.803 72.222 0.00 0.00 0.00 4.26
242 243 4.891727 CGGATGGCGGCGCTACTT 62.892 66.667 32.30 12.12 0.00 2.24
243 244 2.967615 GGATGGCGGCGCTACTTC 60.968 66.667 32.30 20.47 0.00 3.01
244 245 2.107141 GATGGCGGCGCTACTTCT 59.893 61.111 32.30 10.80 0.00 2.85
245 246 1.521681 GATGGCGGCGCTACTTCTT 60.522 57.895 32.30 10.36 0.00 2.52
246 247 1.491505 GATGGCGGCGCTACTTCTTC 61.492 60.000 32.30 15.91 0.00 2.87
247 248 3.255379 GGCGGCGCTACTTCTTCG 61.255 66.667 32.30 0.00 0.00 3.79
248 249 2.202570 GCGGCGCTACTTCTTCGA 60.203 61.111 26.86 0.00 0.00 3.71
249 250 2.224885 GCGGCGCTACTTCTTCGAG 61.225 63.158 26.86 0.00 0.00 4.04
250 251 1.136984 CGGCGCTACTTCTTCGAGT 59.863 57.895 7.64 0.00 0.00 4.18
251 252 0.456312 CGGCGCTACTTCTTCGAGTT 60.456 55.000 7.64 0.00 0.00 3.01
252 253 1.711206 GGCGCTACTTCTTCGAGTTT 58.289 50.000 7.64 0.00 0.00 2.66
253 254 1.390463 GGCGCTACTTCTTCGAGTTTG 59.610 52.381 7.64 0.00 0.00 2.93
254 255 2.059541 GCGCTACTTCTTCGAGTTTGT 58.940 47.619 0.00 0.00 0.00 2.83
255 256 2.090812 GCGCTACTTCTTCGAGTTTGTC 59.909 50.000 0.00 0.00 0.00 3.18
256 257 3.566523 CGCTACTTCTTCGAGTTTGTCT 58.433 45.455 0.00 0.00 0.00 3.41
257 258 3.982058 CGCTACTTCTTCGAGTTTGTCTT 59.018 43.478 0.00 0.00 0.00 3.01
258 259 4.088781 CGCTACTTCTTCGAGTTTGTCTTC 59.911 45.833 0.00 0.00 0.00 2.87
259 260 4.386350 GCTACTTCTTCGAGTTTGTCTTCC 59.614 45.833 0.00 0.00 0.00 3.46
260 261 3.729966 ACTTCTTCGAGTTTGTCTTCCC 58.270 45.455 0.00 0.00 0.00 3.97
261 262 2.433868 TCTTCGAGTTTGTCTTCCCG 57.566 50.000 0.00 0.00 0.00 5.14
262 263 1.000506 TCTTCGAGTTTGTCTTCCCGG 59.999 52.381 0.00 0.00 0.00 5.73
263 264 0.601841 TTCGAGTTTGTCTTCCCGGC 60.602 55.000 0.00 0.00 0.00 6.13
264 265 1.004918 CGAGTTTGTCTTCCCGGCT 60.005 57.895 0.00 0.00 0.00 5.52
265 266 1.014564 CGAGTTTGTCTTCCCGGCTC 61.015 60.000 0.00 0.00 0.00 4.70
266 267 0.321996 GAGTTTGTCTTCCCGGCTCT 59.678 55.000 0.00 0.00 0.00 4.09
267 268 1.549170 GAGTTTGTCTTCCCGGCTCTA 59.451 52.381 0.00 0.00 0.00 2.43
268 269 1.975680 AGTTTGTCTTCCCGGCTCTAA 59.024 47.619 0.00 0.00 0.00 2.10
269 270 2.028020 AGTTTGTCTTCCCGGCTCTAAG 60.028 50.000 0.00 0.00 0.00 2.18
270 271 1.933021 TTGTCTTCCCGGCTCTAAGA 58.067 50.000 0.00 0.00 0.00 2.10
271 272 1.183549 TGTCTTCCCGGCTCTAAGAC 58.816 55.000 21.07 21.07 45.99 3.01
272 273 0.460722 GTCTTCCCGGCTCTAAGACC 59.539 60.000 18.84 7.74 42.03 3.85
273 274 0.686769 TCTTCCCGGCTCTAAGACCC 60.687 60.000 0.00 0.00 0.00 4.46
274 275 2.017559 CTTCCCGGCTCTAAGACCCG 62.018 65.000 0.00 0.00 41.60 5.28
275 276 2.441532 CCCGGCTCTAAGACCCGA 60.442 66.667 6.82 0.00 44.55 5.14
276 277 2.783288 CCCGGCTCTAAGACCCGAC 61.783 68.421 6.82 0.00 44.55 4.79
277 278 2.408022 CGGCTCTAAGACCCGACG 59.592 66.667 0.00 0.00 44.55 5.12
278 279 2.110967 CGGCTCTAAGACCCGACGA 61.111 63.158 0.00 0.00 44.55 4.20
279 280 1.651240 CGGCTCTAAGACCCGACGAA 61.651 60.000 0.00 0.00 44.55 3.85
280 281 0.179142 GGCTCTAAGACCCGACGAAC 60.179 60.000 0.00 0.00 0.00 3.95
281 282 0.524862 GCTCTAAGACCCGACGAACA 59.475 55.000 0.00 0.00 0.00 3.18
282 283 1.731750 GCTCTAAGACCCGACGAACAC 60.732 57.143 0.00 0.00 0.00 3.32
283 284 0.883833 TCTAAGACCCGACGAACACC 59.116 55.000 0.00 0.00 0.00 4.16
284 285 0.599558 CTAAGACCCGACGAACACCA 59.400 55.000 0.00 0.00 0.00 4.17
285 286 0.314935 TAAGACCCGACGAACACCAC 59.685 55.000 0.00 0.00 0.00 4.16
286 287 2.688526 AAGACCCGACGAACACCACG 62.689 60.000 0.00 0.00 0.00 4.94
287 288 4.955774 ACCCGACGAACACCACGC 62.956 66.667 0.00 0.00 0.00 5.34
289 290 4.657824 CCGACGAACACCACGCCT 62.658 66.667 0.00 0.00 0.00 5.52
290 291 3.103911 CGACGAACACCACGCCTC 61.104 66.667 0.00 0.00 0.00 4.70
291 292 2.028484 GACGAACACCACGCCTCA 59.972 61.111 0.00 0.00 0.00 3.86
292 293 2.279918 ACGAACACCACGCCTCAC 60.280 61.111 0.00 0.00 0.00 3.51
293 294 2.279851 CGAACACCACGCCTCACA 60.280 61.111 0.00 0.00 0.00 3.58
294 295 1.885388 CGAACACCACGCCTCACAA 60.885 57.895 0.00 0.00 0.00 3.33
295 296 1.831389 CGAACACCACGCCTCACAAG 61.831 60.000 0.00 0.00 0.00 3.16
296 297 2.117941 GAACACCACGCCTCACAAGC 62.118 60.000 0.00 0.00 0.00 4.01
297 298 2.591429 CACCACGCCTCACAAGCA 60.591 61.111 0.00 0.00 0.00 3.91
298 299 2.281070 ACCACGCCTCACAAGCAG 60.281 61.111 0.00 0.00 0.00 4.24
299 300 3.730761 CCACGCCTCACAAGCAGC 61.731 66.667 0.00 0.00 0.00 5.25
300 301 3.730761 CACGCCTCACAAGCAGCC 61.731 66.667 0.00 0.00 0.00 4.85
301 302 4.254709 ACGCCTCACAAGCAGCCA 62.255 61.111 0.00 0.00 0.00 4.75
302 303 2.749044 CGCCTCACAAGCAGCCAT 60.749 61.111 0.00 0.00 0.00 4.40
303 304 2.882876 GCCTCACAAGCAGCCATG 59.117 61.111 0.00 0.00 0.00 3.66
304 305 2.707849 GCCTCACAAGCAGCCATGG 61.708 63.158 7.63 7.63 0.00 3.66
305 306 1.303888 CCTCACAAGCAGCCATGGT 60.304 57.895 14.67 0.00 39.32 3.55
306 307 1.310933 CCTCACAAGCAGCCATGGTC 61.311 60.000 14.67 5.80 35.69 4.02
307 308 1.303561 TCACAAGCAGCCATGGTCC 60.304 57.895 14.67 1.82 35.69 4.46
308 309 1.604308 CACAAGCAGCCATGGTCCA 60.604 57.895 14.67 0.00 35.69 4.02
309 310 1.303888 ACAAGCAGCCATGGTCCAG 60.304 57.895 14.67 2.04 35.69 3.86
310 311 1.001764 CAAGCAGCCATGGTCCAGA 60.002 57.895 14.67 0.00 35.69 3.86
311 312 1.001641 AAGCAGCCATGGTCCAGAC 60.002 57.895 14.67 0.00 35.69 3.51
312 313 1.782201 AAGCAGCCATGGTCCAGACA 61.782 55.000 14.67 0.00 35.69 3.41
313 314 2.042831 GCAGCCATGGTCCAGACAC 61.043 63.158 14.67 0.00 0.00 3.67
314 315 1.742880 CAGCCATGGTCCAGACACG 60.743 63.158 14.67 0.00 0.00 4.49
315 316 1.913262 AGCCATGGTCCAGACACGA 60.913 57.895 14.67 0.00 0.00 4.35
316 317 1.448540 GCCATGGTCCAGACACGAG 60.449 63.158 14.67 0.00 0.00 4.18
317 318 1.448540 CCATGGTCCAGACACGAGC 60.449 63.158 2.57 0.00 0.00 5.03
318 319 1.293179 CATGGTCCAGACACGAGCA 59.707 57.895 0.00 0.00 41.58 4.26
319 320 1.016130 CATGGTCCAGACACGAGCAC 61.016 60.000 0.00 0.00 40.29 4.40
320 321 2.048127 GGTCCAGACACGAGCACC 60.048 66.667 0.00 0.00 0.00 5.01
321 322 2.734591 GTCCAGACACGAGCACCA 59.265 61.111 0.00 0.00 0.00 4.17
322 323 1.664965 GTCCAGACACGAGCACCAC 60.665 63.158 0.00 0.00 0.00 4.16
323 324 2.357517 CCAGACACGAGCACCACC 60.358 66.667 0.00 0.00 0.00 4.61
324 325 2.421314 CAGACACGAGCACCACCA 59.579 61.111 0.00 0.00 0.00 4.17
325 326 1.665916 CAGACACGAGCACCACCAG 60.666 63.158 0.00 0.00 0.00 4.00
326 327 1.832608 AGACACGAGCACCACCAGA 60.833 57.895 0.00 0.00 0.00 3.86
327 328 1.188219 AGACACGAGCACCACCAGAT 61.188 55.000 0.00 0.00 0.00 2.90
328 329 0.737715 GACACGAGCACCACCAGATC 60.738 60.000 0.00 0.00 0.00 2.75
329 330 1.448540 CACGAGCACCACCAGATCC 60.449 63.158 0.00 0.00 0.00 3.36
330 331 1.913262 ACGAGCACCACCAGATCCA 60.913 57.895 0.00 0.00 0.00 3.41
331 332 1.153489 CGAGCACCACCAGATCCAG 60.153 63.158 0.00 0.00 0.00 3.86
332 333 1.607801 CGAGCACCACCAGATCCAGA 61.608 60.000 0.00 0.00 0.00 3.86
333 334 0.835941 GAGCACCACCAGATCCAGAT 59.164 55.000 0.00 0.00 0.00 2.90
334 335 0.835941 AGCACCACCAGATCCAGATC 59.164 55.000 0.00 0.00 38.09 2.75
335 336 0.531532 GCACCACCAGATCCAGATCG 60.532 60.000 2.08 0.00 42.48 3.69
336 337 0.105593 CACCACCAGATCCAGATCGG 59.894 60.000 13.47 13.47 42.48 4.18
345 346 2.524394 CCAGATCGGGATCGGGGT 60.524 66.667 17.02 0.00 45.53 4.95
346 347 2.574955 CCAGATCGGGATCGGGGTC 61.575 68.421 17.02 0.00 45.53 4.46
347 348 1.832608 CAGATCGGGATCGGGGTCA 60.833 63.158 3.19 0.00 42.48 4.02
348 349 1.075525 AGATCGGGATCGGGGTCAA 60.076 57.895 3.19 0.00 42.48 3.18
349 350 1.115930 AGATCGGGATCGGGGTCAAG 61.116 60.000 3.19 0.00 42.48 3.02
350 351 2.100879 GATCGGGATCGGGGTCAAGG 62.101 65.000 0.00 0.00 36.95 3.61
351 352 3.861797 CGGGATCGGGGTCAAGGG 61.862 72.222 0.00 0.00 0.00 3.95
352 353 4.191015 GGGATCGGGGTCAAGGGC 62.191 72.222 0.00 0.00 0.00 5.19
353 354 4.191015 GGATCGGGGTCAAGGGCC 62.191 72.222 0.00 0.00 0.00 5.80
354 355 4.191015 GATCGGGGTCAAGGGCCC 62.191 72.222 16.46 16.46 45.35 5.80
384 385 4.814294 CCGCGGAGGTAGCACCAC 62.814 72.222 24.07 0.00 41.95 4.16
385 386 3.760035 CGCGGAGGTAGCACCACT 61.760 66.667 9.13 0.00 41.95 4.00
386 387 2.125512 GCGGAGGTAGCACCACTG 60.126 66.667 9.13 7.43 41.95 3.66
387 388 2.579201 CGGAGGTAGCACCACTGG 59.421 66.667 9.13 0.00 41.95 4.00
388 389 1.982395 CGGAGGTAGCACCACTGGA 60.982 63.158 9.13 0.00 41.95 3.86
389 390 1.597461 GGAGGTAGCACCACTGGAC 59.403 63.158 0.71 0.00 41.95 4.02
390 391 1.215647 GAGGTAGCACCACTGGACG 59.784 63.158 0.71 0.00 41.95 4.79
391 392 2.227089 GAGGTAGCACCACTGGACGG 62.227 65.000 0.71 0.00 41.95 4.79
392 393 2.580601 GGTAGCACCACTGGACGGT 61.581 63.158 0.71 0.72 38.42 4.83
398 399 4.704833 CCACTGGACGGTGCCCTG 62.705 72.222 5.76 0.00 36.03 4.45
417 418 3.465403 CCTCCACCCTCGCCAGAG 61.465 72.222 0.00 0.00 43.98 3.35
425 426 4.200283 CTCGCCAGAGGACCGAGC 62.200 72.222 0.00 0.00 41.41 5.03
426 427 4.742649 TCGCCAGAGGACCGAGCT 62.743 66.667 0.00 0.00 0.00 4.09
427 428 2.829003 CGCCAGAGGACCGAGCTA 60.829 66.667 0.00 0.00 0.00 3.32
428 429 2.840066 CGCCAGAGGACCGAGCTAG 61.840 68.421 0.00 0.00 0.00 3.42
429 430 1.755008 GCCAGAGGACCGAGCTAGT 60.755 63.158 0.00 0.00 0.00 2.57
430 431 2.010582 GCCAGAGGACCGAGCTAGTG 62.011 65.000 0.00 0.00 0.00 2.74
431 432 0.681564 CCAGAGGACCGAGCTAGTGT 60.682 60.000 0.00 0.00 0.00 3.55
432 433 0.736053 CAGAGGACCGAGCTAGTGTC 59.264 60.000 6.83 6.83 0.00 3.67
433 434 0.745128 AGAGGACCGAGCTAGTGTCG 60.745 60.000 9.06 9.06 37.17 4.35
440 441 3.927501 AGCTAGTGTCGGAGCTCC 58.072 61.111 23.79 23.79 46.08 4.70
479 480 3.771160 GCCGCCGAGGGAGAGAAA 61.771 66.667 0.00 0.00 41.48 2.52
480 481 2.496817 CCGCCGAGGGAGAGAAAG 59.503 66.667 0.00 0.00 35.97 2.62
481 482 2.496817 CGCCGAGGGAGAGAAAGG 59.503 66.667 0.00 0.00 0.00 3.11
482 483 2.904131 GCCGAGGGAGAGAAAGGG 59.096 66.667 0.00 0.00 0.00 3.95
483 484 1.686110 GCCGAGGGAGAGAAAGGGA 60.686 63.158 0.00 0.00 0.00 4.20
484 485 1.962321 GCCGAGGGAGAGAAAGGGAC 61.962 65.000 0.00 0.00 0.00 4.46
485 486 0.614979 CCGAGGGAGAGAAAGGGACA 60.615 60.000 0.00 0.00 0.00 4.02
486 487 0.533032 CGAGGGAGAGAAAGGGACAC 59.467 60.000 0.00 0.00 0.00 3.67
487 488 0.533032 GAGGGAGAGAAAGGGACACG 59.467 60.000 0.00 0.00 0.00 4.49
488 489 1.079057 GGGAGAGAAAGGGACACGC 60.079 63.158 0.00 0.00 0.00 5.34
489 490 1.079057 GGAGAGAAAGGGACACGCC 60.079 63.158 0.00 0.00 0.00 5.68
490 491 1.671742 GAGAGAAAGGGACACGCCA 59.328 57.895 0.00 0.00 38.95 5.69
491 492 0.390472 GAGAGAAAGGGACACGCCAG 60.390 60.000 0.00 0.00 38.95 4.85
492 493 1.376037 GAGAAAGGGACACGCCAGG 60.376 63.158 0.00 0.00 38.95 4.45
493 494 2.359975 GAAAGGGACACGCCAGGG 60.360 66.667 0.00 0.00 38.95 4.45
494 495 2.852075 AAAGGGACACGCCAGGGA 60.852 61.111 0.00 0.00 38.95 4.20
495 496 2.804828 GAAAGGGACACGCCAGGGAG 62.805 65.000 0.00 0.00 38.95 4.30
496 497 3.846405 AAGGGACACGCCAGGGAGA 62.846 63.158 0.00 0.00 38.95 3.71
497 498 3.775654 GGGACACGCCAGGGAGAG 61.776 72.222 0.00 0.00 38.95 3.20
498 499 3.775654 GGACACGCCAGGGAGAGG 61.776 72.222 0.00 0.00 36.34 3.69
509 510 4.154347 GGAGAGGCCCAGTCGCAG 62.154 72.222 0.00 0.00 0.00 5.18
510 511 4.828925 GAGAGGCCCAGTCGCAGC 62.829 72.222 0.00 0.00 0.00 5.25
517 518 4.694233 CCAGTCGCAGCCAGCACT 62.694 66.667 0.00 0.00 46.13 4.40
518 519 3.420606 CAGTCGCAGCCAGCACTG 61.421 66.667 12.97 12.97 46.13 3.66
540 541 3.365265 GGCTTTGCCCGACACTGG 61.365 66.667 0.00 0.00 44.06 4.00
568 569 3.083997 CGGTGAGGGGGAAGGGAG 61.084 72.222 0.00 0.00 0.00 4.30
569 570 2.692741 GGTGAGGGGGAAGGGAGG 60.693 72.222 0.00 0.00 0.00 4.30
570 571 2.125225 GTGAGGGGGAAGGGAGGT 59.875 66.667 0.00 0.00 0.00 3.85
571 572 1.541620 GTGAGGGGGAAGGGAGGTT 60.542 63.158 0.00 0.00 0.00 3.50
572 573 1.541368 TGAGGGGGAAGGGAGGTTG 60.541 63.158 0.00 0.00 0.00 3.77
573 574 2.204306 AGGGGGAAGGGAGGTTGG 60.204 66.667 0.00 0.00 0.00 3.77
574 575 2.204244 GGGGGAAGGGAGGTTGGA 60.204 66.667 0.00 0.00 0.00 3.53
575 576 2.309504 GGGGGAAGGGAGGTTGGAG 61.310 68.421 0.00 0.00 0.00 3.86
576 577 2.309504 GGGGAAGGGAGGTTGGAGG 61.310 68.421 0.00 0.00 0.00 4.30
577 578 2.309504 GGGAAGGGAGGTTGGAGGG 61.310 68.421 0.00 0.00 0.00 4.30
578 579 2.309504 GGAAGGGAGGTTGGAGGGG 61.310 68.421 0.00 0.00 0.00 4.79
579 580 2.204306 AAGGGAGGTTGGAGGGGG 60.204 66.667 0.00 0.00 0.00 5.40
599 600 4.851179 GGCGGCGGGGGAAGTTAG 62.851 72.222 9.78 0.00 0.00 2.34
600 601 4.851179 GCGGCGGGGGAAGTTAGG 62.851 72.222 9.78 0.00 0.00 2.69
601 602 4.171103 CGGCGGGGGAAGTTAGGG 62.171 72.222 0.00 0.00 0.00 3.53
602 603 3.013327 GGCGGGGGAAGTTAGGGT 61.013 66.667 0.00 0.00 0.00 4.34
603 604 2.609534 GGCGGGGGAAGTTAGGGTT 61.610 63.158 0.00 0.00 0.00 4.11
604 605 1.077930 GCGGGGGAAGTTAGGGTTC 60.078 63.158 0.00 0.00 0.00 3.62
605 606 1.605992 CGGGGGAAGTTAGGGTTCC 59.394 63.158 0.00 0.00 42.57 3.62
616 617 4.097361 GGGTTCCCCTGAGTCGCC 62.097 72.222 0.00 0.00 41.34 5.54
617 618 3.003763 GGTTCCCCTGAGTCGCCT 61.004 66.667 0.00 0.00 0.00 5.52
618 619 2.593956 GGTTCCCCTGAGTCGCCTT 61.594 63.158 0.00 0.00 0.00 4.35
619 620 1.262640 GGTTCCCCTGAGTCGCCTTA 61.263 60.000 0.00 0.00 0.00 2.69
620 621 0.175989 GTTCCCCTGAGTCGCCTTAG 59.824 60.000 0.00 0.00 0.00 2.18
621 622 0.040646 TTCCCCTGAGTCGCCTTAGA 59.959 55.000 0.00 0.00 0.00 2.10
622 623 0.395862 TCCCCTGAGTCGCCTTAGAG 60.396 60.000 0.00 0.00 0.00 2.43
623 624 0.395862 CCCCTGAGTCGCCTTAGAGA 60.396 60.000 0.00 0.00 0.00 3.10
624 625 0.741915 CCCTGAGTCGCCTTAGAGAC 59.258 60.000 0.00 0.85 42.60 3.36
625 626 0.378962 CCTGAGTCGCCTTAGAGACG 59.621 60.000 0.00 0.00 46.37 4.18
626 627 0.378962 CTGAGTCGCCTTAGAGACGG 59.621 60.000 0.00 0.00 46.37 4.79
627 628 0.035725 TGAGTCGCCTTAGAGACGGA 60.036 55.000 0.00 0.00 46.37 4.69
628 629 0.377905 GAGTCGCCTTAGAGACGGAC 59.622 60.000 0.00 0.00 46.37 4.79
629 630 1.031029 AGTCGCCTTAGAGACGGACC 61.031 60.000 0.00 0.00 46.37 4.46
630 631 2.110967 TCGCCTTAGAGACGGACCG 61.111 63.158 13.61 13.61 0.00 4.79
631 632 2.110967 CGCCTTAGAGACGGACCGA 61.111 63.158 23.38 0.00 0.00 4.69
632 633 1.728672 GCCTTAGAGACGGACCGAG 59.271 63.158 23.38 5.92 0.00 4.63
633 634 1.726533 GCCTTAGAGACGGACCGAGG 61.727 65.000 23.38 16.57 0.00 4.63
634 635 1.102222 CCTTAGAGACGGACCGAGGG 61.102 65.000 23.38 3.26 0.00 4.30
635 636 0.107312 CTTAGAGACGGACCGAGGGA 60.107 60.000 23.38 0.00 0.00 4.20
636 637 0.393537 TTAGAGACGGACCGAGGGAC 60.394 60.000 23.38 7.02 0.00 4.46
637 638 2.584261 TAGAGACGGACCGAGGGACG 62.584 65.000 23.38 6.26 42.18 4.79
655 656 2.757077 GGGGGAGAAGGGTGTGTG 59.243 66.667 0.00 0.00 0.00 3.82
656 657 2.154074 GGGGGAGAAGGGTGTGTGT 61.154 63.158 0.00 0.00 0.00 3.72
657 658 1.716028 GGGGGAGAAGGGTGTGTGTT 61.716 60.000 0.00 0.00 0.00 3.32
658 659 0.537371 GGGGAGAAGGGTGTGTGTTG 60.537 60.000 0.00 0.00 0.00 3.33
659 660 0.472471 GGGAGAAGGGTGTGTGTTGA 59.528 55.000 0.00 0.00 0.00 3.18
660 661 1.594331 GGAGAAGGGTGTGTGTTGAC 58.406 55.000 0.00 0.00 0.00 3.18
661 662 1.134220 GGAGAAGGGTGTGTGTTGACA 60.134 52.381 0.00 0.00 0.00 3.58
662 663 2.213499 GAGAAGGGTGTGTGTTGACAG 58.787 52.381 0.00 0.00 30.74 3.51
663 664 0.663153 GAAGGGTGTGTGTTGACAGC 59.337 55.000 0.00 0.00 42.46 4.40
665 666 4.234019 GGTGTGTGTTGACAGCCA 57.766 55.556 0.00 0.00 38.21 4.75
666 667 2.024918 GGTGTGTGTTGACAGCCAG 58.975 57.895 0.00 0.00 38.21 4.85
667 668 1.356624 GTGTGTGTTGACAGCCAGC 59.643 57.895 0.00 0.00 30.74 4.85
668 669 1.097547 GTGTGTGTTGACAGCCAGCT 61.098 55.000 0.00 0.00 30.74 4.24
669 670 0.467804 TGTGTGTTGACAGCCAGCTA 59.532 50.000 0.00 0.00 30.74 3.32
677 678 1.762957 TGACAGCCAGCTATACTTCCC 59.237 52.381 0.00 0.00 0.00 3.97
680 681 1.771255 CAGCCAGCTATACTTCCCCTT 59.229 52.381 0.00 0.00 0.00 3.95
714 717 9.988350 ATAATATATTCGGATCATTTTCGCAAC 57.012 29.630 0.00 0.00 0.00 4.17
717 721 3.196007 TCGGATCATTTTCGCAACAAC 57.804 42.857 0.00 0.00 0.00 3.32
885 906 0.251653 GTGGGGAGGGGGAGAAAAAC 60.252 60.000 0.00 0.00 0.00 2.43
887 908 0.485543 GGGGAGGGGGAGAAAAACAA 59.514 55.000 0.00 0.00 0.00 2.83
896 917 1.068954 GGAGAAAAACAAGAGCTGCCG 60.069 52.381 0.00 0.00 0.00 5.69
1211 1232 0.733223 GACTTCCTCTTCGGTGCGTC 60.733 60.000 0.00 0.00 0.00 5.19
1212 1233 1.801913 CTTCCTCTTCGGTGCGTCG 60.802 63.158 0.00 0.00 0.00 5.12
1406 1428 3.444805 AGGTGAGCTCTCGTCGCC 61.445 66.667 16.19 4.73 43.81 5.54
1433 1471 1.660607 AGAAATGTGCGTATGCTCGTG 59.339 47.619 8.69 0.00 43.34 4.35
1501 1542 2.511373 AGATCGGCATTGCGCGAA 60.511 55.556 20.58 0.00 43.84 4.70
1547 1588 2.636412 CCTCGACTCGCCCAACAGA 61.636 63.158 0.00 0.00 0.00 3.41
1575 1616 0.244450 CACGCGGGAGTACAGGTAAA 59.756 55.000 12.47 0.00 0.00 2.01
1576 1617 0.968405 ACGCGGGAGTACAGGTAAAA 59.032 50.000 12.47 0.00 0.00 1.52
1642 1687 0.459237 AGAAGCGGCTGATCTTGTCG 60.459 55.000 1.81 8.50 35.45 4.35
1645 1690 1.139734 GCGGCTGATCTTGTCGAGA 59.860 57.895 15.25 0.00 39.13 4.04
1716 1761 2.592308 CCCCCTAACAGCAGCCTC 59.408 66.667 0.00 0.00 0.00 4.70
2289 2375 2.366570 GACCCCTCCTGCTCCTCT 59.633 66.667 0.00 0.00 0.00 3.69
2295 2381 1.048160 CCTCCTGCTCCTCTTCCTCC 61.048 65.000 0.00 0.00 0.00 4.30
2296 2382 0.032217 CTCCTGCTCCTCTTCCTCCT 60.032 60.000 0.00 0.00 0.00 3.69
2297 2383 0.032615 TCCTGCTCCTCTTCCTCCTC 60.033 60.000 0.00 0.00 0.00 3.71
2298 2384 1.391157 CCTGCTCCTCTTCCTCCTCG 61.391 65.000 0.00 0.00 0.00 4.63
2299 2385 0.682855 CTGCTCCTCTTCCTCCTCGT 60.683 60.000 0.00 0.00 0.00 4.18
2300 2386 0.681564 TGCTCCTCTTCCTCCTCGTC 60.682 60.000 0.00 0.00 0.00 4.20
2373 2507 1.300542 GAGCTACTGCCTCATCGCC 60.301 63.158 0.00 0.00 40.80 5.54
2715 2851 1.574526 ATCCCATCACCCACCCACAG 61.575 60.000 0.00 0.00 0.00 3.66
2962 3102 0.105408 AGCAGCCAAAAACCAAGCAG 59.895 50.000 0.00 0.00 0.00 4.24
2987 3129 0.321298 GCCGGCTGACAAGAAACCTA 60.321 55.000 22.15 0.00 0.00 3.08
3026 3168 1.227497 GATCGAGAGGCAAGCAGGG 60.227 63.158 0.00 0.00 0.00 4.45
3180 3323 2.872245 CCAGCAGAAAAAGAACTGTCGA 59.128 45.455 0.00 0.00 36.62 4.20
3209 3352 5.832595 TCTGAACCATGAAATTTTCAGGTCA 59.167 36.000 22.43 18.81 43.98 4.02
3233 3376 3.069872 TGCCAAACTCTGACGTAAGGTTA 59.930 43.478 0.00 0.00 46.39 2.85
3237 3380 3.949842 ACTCTGACGTAAGGTTAACCC 57.050 47.619 21.30 5.17 46.39 4.11
3238 3381 2.564504 ACTCTGACGTAAGGTTAACCCC 59.435 50.000 21.30 8.60 46.39 4.95
3239 3382 2.564062 CTCTGACGTAAGGTTAACCCCA 59.436 50.000 21.30 6.35 46.39 4.96
3240 3383 3.175594 TCTGACGTAAGGTTAACCCCAT 58.824 45.455 21.30 10.41 46.39 4.00
3248 3391 2.573463 AGGTTAACCCCATCTCCATGT 58.427 47.619 21.30 0.00 36.42 3.21
3475 3618 1.623359 CGCAGAGACACAGCTTCTAC 58.377 55.000 0.00 0.00 0.00 2.59
3577 3721 2.297315 GGAGGGGCTGAAAGTTTTTCAG 59.703 50.000 21.36 21.36 46.42 3.02
3591 3735 4.829492 AGTTTTTCAGCTTTCATGCCTAGT 59.171 37.500 0.00 0.00 0.00 2.57
3638 3783 4.778213 AATGGTGGCTTCTAGCAGATAA 57.222 40.909 0.00 0.00 44.75 1.75
3667 3812 2.071778 TGCCAACTCCTTGAGCTTTT 57.928 45.000 0.00 0.00 32.04 2.27
3669 3814 3.561143 TGCCAACTCCTTGAGCTTTTAA 58.439 40.909 0.00 0.00 32.04 1.52
3670 3815 3.317993 TGCCAACTCCTTGAGCTTTTAAC 59.682 43.478 0.00 0.00 32.04 2.01
3671 3816 3.317993 GCCAACTCCTTGAGCTTTTAACA 59.682 43.478 0.00 0.00 32.04 2.41
3672 3817 4.793028 GCCAACTCCTTGAGCTTTTAACAC 60.793 45.833 0.00 0.00 32.04 3.32
3673 3818 4.580580 CCAACTCCTTGAGCTTTTAACACT 59.419 41.667 0.00 0.00 32.04 3.55
3674 3819 5.763204 CCAACTCCTTGAGCTTTTAACACTA 59.237 40.000 0.00 0.00 32.04 2.74
3675 3820 6.073003 CCAACTCCTTGAGCTTTTAACACTAG 60.073 42.308 0.00 0.00 32.04 2.57
3676 3821 4.998033 ACTCCTTGAGCTTTTAACACTAGC 59.002 41.667 0.00 0.00 32.04 3.42
3686 3831 6.041511 GCTTTTAACACTAGCTAGTACTCCC 58.958 44.000 25.63 6.62 34.13 4.30
3710 3855 7.982354 CCCTGAGGAGTAAATAACAGTAGAAAG 59.018 40.741 0.00 0.00 33.47 2.62
3792 3962 2.492088 AGTTAAGAAATGGCGGAAAGGC 59.508 45.455 0.00 0.00 46.95 4.35
3846 4016 5.486775 AGGATATAGCATGCACTCCAATAGT 59.513 40.000 21.98 0.00 39.81 2.12
3849 4019 7.175641 GGATATAGCATGCACTCCAATAGTTTT 59.824 37.037 21.98 0.00 35.76 2.43
3850 4020 4.445452 AGCATGCACTCCAATAGTTTTG 57.555 40.909 21.98 0.00 35.76 2.44
3864 4034 6.753744 CCAATAGTTTTGAAAGAGCAATAGGC 59.246 38.462 0.00 0.00 45.30 3.93
3942 4112 4.543590 TTTGTTGCCAAAAGGTTCTTCA 57.456 36.364 0.00 0.00 37.62 3.02
3977 4147 1.674441 GGGGCCGACTACAAAATAAGC 59.326 52.381 0.00 0.00 0.00 3.09
4106 4276 4.582869 ACTTGTCATGCTGATAGCTTCAA 58.417 39.130 0.00 2.58 42.97 2.69
4167 4337 4.069232 CCCCTCGCGAGCTTGTCA 62.069 66.667 30.49 0.00 0.00 3.58
4212 4412 7.413644 GGTCTCTGTTTCTTCTTTCTTTTCAG 58.586 38.462 0.00 0.00 0.00 3.02
4213 4413 7.281100 GGTCTCTGTTTCTTCTTTCTTTTCAGA 59.719 37.037 0.00 0.00 0.00 3.27
4214 4414 8.119845 GTCTCTGTTTCTTCTTTCTTTTCAGAC 58.880 37.037 0.00 0.00 0.00 3.51
4215 4415 7.281100 TCTCTGTTTCTTCTTTCTTTTCAGACC 59.719 37.037 0.00 0.00 0.00 3.85
4216 4416 6.318900 TCTGTTTCTTCTTTCTTTTCAGACCC 59.681 38.462 0.00 0.00 0.00 4.46
4217 4417 5.949354 TGTTTCTTCTTTCTTTTCAGACCCA 59.051 36.000 0.00 0.00 0.00 4.51
4218 4418 6.095440 TGTTTCTTCTTTCTTTTCAGACCCAG 59.905 38.462 0.00 0.00 0.00 4.45
4219 4419 5.373812 TCTTCTTTCTTTTCAGACCCAGT 57.626 39.130 0.00 0.00 0.00 4.00
4220 4420 5.368989 TCTTCTTTCTTTTCAGACCCAGTC 58.631 41.667 0.00 0.00 0.00 3.51
4221 4421 5.131142 TCTTCTTTCTTTTCAGACCCAGTCT 59.869 40.000 0.00 0.00 44.44 3.24
4222 4422 4.962155 TCTTTCTTTTCAGACCCAGTCTC 58.038 43.478 0.00 0.00 41.37 3.36
4223 4423 4.656112 TCTTTCTTTTCAGACCCAGTCTCT 59.344 41.667 0.00 0.00 41.37 3.10
4224 4424 4.342862 TTCTTTTCAGACCCAGTCTCTG 57.657 45.455 0.00 0.00 41.37 3.35
4225 4425 3.309296 TCTTTTCAGACCCAGTCTCTGT 58.691 45.455 0.00 0.00 41.37 3.41
4226 4426 3.711704 TCTTTTCAGACCCAGTCTCTGTT 59.288 43.478 0.00 0.00 41.37 3.16
4227 4427 4.164221 TCTTTTCAGACCCAGTCTCTGTTT 59.836 41.667 0.00 0.00 41.37 2.83
4228 4428 3.753294 TTCAGACCCAGTCTCTGTTTC 57.247 47.619 0.00 0.00 41.37 2.78
4229 4429 2.964209 TCAGACCCAGTCTCTGTTTCT 58.036 47.619 0.00 0.00 41.37 2.52
4230 4430 3.309296 TCAGACCCAGTCTCTGTTTCTT 58.691 45.455 0.00 0.00 41.37 2.52
4231 4431 3.322254 TCAGACCCAGTCTCTGTTTCTTC 59.678 47.826 0.00 0.00 41.37 2.87
4232 4432 3.323403 CAGACCCAGTCTCTGTTTCTTCT 59.677 47.826 0.00 0.00 41.37 2.85
4233 4433 3.970640 AGACCCAGTCTCTGTTTCTTCTT 59.029 43.478 0.00 0.00 38.71 2.52
4234 4434 4.410555 AGACCCAGTCTCTGTTTCTTCTTT 59.589 41.667 0.00 0.00 38.71 2.52
4235 4435 4.709250 ACCCAGTCTCTGTTTCTTCTTTC 58.291 43.478 0.00 0.00 0.00 2.62
4236 4436 4.410555 ACCCAGTCTCTGTTTCTTCTTTCT 59.589 41.667 0.00 0.00 0.00 2.52
4237 4437 5.104318 ACCCAGTCTCTGTTTCTTCTTTCTT 60.104 40.000 0.00 0.00 0.00 2.52
4238 4438 5.825151 CCCAGTCTCTGTTTCTTCTTTCTTT 59.175 40.000 0.00 0.00 0.00 2.52
4239 4439 6.319911 CCCAGTCTCTGTTTCTTCTTTCTTTT 59.680 38.462 0.00 0.00 0.00 2.27
4240 4440 7.413644 CCAGTCTCTGTTTCTTCTTTCTTTTC 58.586 38.462 0.00 0.00 0.00 2.29
4241 4441 7.066284 CCAGTCTCTGTTTCTTCTTTCTTTTCA 59.934 37.037 0.00 0.00 0.00 2.69
4282 4482 4.087182 TCCTCCTTTACAGATTCAGTCGT 58.913 43.478 0.00 0.00 0.00 4.34
4301 4501 2.772515 CGTATTTTCTCCCCTCTTCCCT 59.227 50.000 0.00 0.00 0.00 4.20
4345 4545 2.588314 CTCAGATGCAGCCTCGGC 60.588 66.667 0.00 0.00 42.33 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.179062 CGATTTGCTCTGGGAGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
5 6 0.617535 TCGATTTGCTCTGGGAGGGA 60.618 55.000 0.00 0.00 0.00 4.20
6 7 0.462759 GTCGATTTGCTCTGGGAGGG 60.463 60.000 0.00 0.00 0.00 4.30
7 8 0.539051 AGTCGATTTGCTCTGGGAGG 59.461 55.000 0.00 0.00 0.00 4.30
8 9 2.093764 AGAAGTCGATTTGCTCTGGGAG 60.094 50.000 0.00 0.00 0.00 4.30
9 10 1.902508 AGAAGTCGATTTGCTCTGGGA 59.097 47.619 0.00 0.00 0.00 4.37
10 11 2.393271 AGAAGTCGATTTGCTCTGGG 57.607 50.000 0.00 0.00 0.00 4.45
11 12 3.594134 AGAAGAAGTCGATTTGCTCTGG 58.406 45.455 0.00 0.00 0.00 3.86
12 13 3.302964 CGAGAAGAAGTCGATTTGCTCTG 59.697 47.826 0.00 0.00 39.92 3.35
13 14 3.057174 ACGAGAAGAAGTCGATTTGCTCT 60.057 43.478 0.00 0.00 39.92 4.09
14 15 3.246619 ACGAGAAGAAGTCGATTTGCTC 58.753 45.455 0.00 1.79 39.92 4.26
15 16 3.305398 ACGAGAAGAAGTCGATTTGCT 57.695 42.857 0.00 0.00 39.92 3.91
16 17 4.391140 AAACGAGAAGAAGTCGATTTGC 57.609 40.909 0.00 0.00 39.92 3.68
17 18 5.177696 AGGAAAACGAGAAGAAGTCGATTTG 59.822 40.000 0.00 0.00 40.95 2.32
18 19 5.298347 AGGAAAACGAGAAGAAGTCGATTT 58.702 37.500 0.00 0.00 42.77 2.17
19 20 4.884247 AGGAAAACGAGAAGAAGTCGATT 58.116 39.130 0.00 0.00 39.92 3.34
20 21 4.522722 AGGAAAACGAGAAGAAGTCGAT 57.477 40.909 0.00 0.00 39.92 3.59
21 22 4.296690 GAAGGAAAACGAGAAGAAGTCGA 58.703 43.478 0.00 0.00 39.92 4.20
22 23 3.429207 GGAAGGAAAACGAGAAGAAGTCG 59.571 47.826 0.00 0.00 43.25 4.18
23 24 3.747010 GGGAAGGAAAACGAGAAGAAGTC 59.253 47.826 0.00 0.00 0.00 3.01
24 25 3.391626 AGGGAAGGAAAACGAGAAGAAGT 59.608 43.478 0.00 0.00 0.00 3.01
25 26 4.009370 AGGGAAGGAAAACGAGAAGAAG 57.991 45.455 0.00 0.00 0.00 2.85
26 27 5.303165 GTTAGGGAAGGAAAACGAGAAGAA 58.697 41.667 0.00 0.00 0.00 2.52
27 28 4.262765 GGTTAGGGAAGGAAAACGAGAAGA 60.263 45.833 0.00 0.00 0.00 2.87
28 29 4.001652 GGTTAGGGAAGGAAAACGAGAAG 58.998 47.826 0.00 0.00 0.00 2.85
29 30 3.244665 GGGTTAGGGAAGGAAAACGAGAA 60.245 47.826 0.00 0.00 0.00 2.87
30 31 2.303890 GGGTTAGGGAAGGAAAACGAGA 59.696 50.000 0.00 0.00 0.00 4.04
31 32 2.305052 AGGGTTAGGGAAGGAAAACGAG 59.695 50.000 0.00 0.00 0.00 4.18
32 33 2.341695 AGGGTTAGGGAAGGAAAACGA 58.658 47.619 0.00 0.00 0.00 3.85
33 34 2.873094 AGGGTTAGGGAAGGAAAACG 57.127 50.000 0.00 0.00 0.00 3.60
34 35 4.232188 CCTAGGGTTAGGGAAGGAAAAC 57.768 50.000 0.00 0.00 42.44 2.43
51 52 4.762289 AGAATTTGTCCTAGCCACCTAG 57.238 45.455 0.00 0.00 40.64 3.02
52 53 4.783227 AGAAGAATTTGTCCTAGCCACCTA 59.217 41.667 0.00 0.00 0.00 3.08
53 54 3.589288 AGAAGAATTTGTCCTAGCCACCT 59.411 43.478 0.00 0.00 0.00 4.00
54 55 3.956744 AGAAGAATTTGTCCTAGCCACC 58.043 45.455 0.00 0.00 0.00 4.61
55 56 5.760743 GGATAGAAGAATTTGTCCTAGCCAC 59.239 44.000 0.00 0.00 36.29 5.01
56 57 5.428457 TGGATAGAAGAATTTGTCCTAGCCA 59.572 40.000 0.00 0.00 41.75 4.75
57 58 5.930135 TGGATAGAAGAATTTGTCCTAGCC 58.070 41.667 0.00 0.00 36.67 3.93
58 59 7.554476 AGTTTGGATAGAAGAATTTGTCCTAGC 59.446 37.037 0.00 0.00 0.00 3.42
59 60 9.454859 AAGTTTGGATAGAAGAATTTGTCCTAG 57.545 33.333 0.00 0.00 0.00 3.02
60 61 9.449719 GAAGTTTGGATAGAAGAATTTGTCCTA 57.550 33.333 0.00 0.00 0.00 2.94
61 62 7.944554 TGAAGTTTGGATAGAAGAATTTGTCCT 59.055 33.333 0.00 0.00 0.00 3.85
62 63 8.110860 TGAAGTTTGGATAGAAGAATTTGTCC 57.889 34.615 0.00 0.00 0.00 4.02
63 64 9.003658 TCTGAAGTTTGGATAGAAGAATTTGTC 57.996 33.333 0.00 0.00 0.00 3.18
64 65 8.787852 GTCTGAAGTTTGGATAGAAGAATTTGT 58.212 33.333 0.00 0.00 0.00 2.83
65 66 7.959651 CGTCTGAAGTTTGGATAGAAGAATTTG 59.040 37.037 0.00 0.00 0.00 2.32
66 67 7.119846 CCGTCTGAAGTTTGGATAGAAGAATTT 59.880 37.037 0.00 0.00 0.00 1.82
67 68 6.595716 CCGTCTGAAGTTTGGATAGAAGAATT 59.404 38.462 0.00 0.00 0.00 2.17
68 69 6.109359 CCGTCTGAAGTTTGGATAGAAGAAT 58.891 40.000 0.00 0.00 0.00 2.40
69 70 5.479306 CCGTCTGAAGTTTGGATAGAAGAA 58.521 41.667 0.00 0.00 0.00 2.52
70 71 4.620803 GCCGTCTGAAGTTTGGATAGAAGA 60.621 45.833 0.00 0.00 0.00 2.87
71 72 3.619038 GCCGTCTGAAGTTTGGATAGAAG 59.381 47.826 0.00 0.00 0.00 2.85
72 73 3.596214 GCCGTCTGAAGTTTGGATAGAA 58.404 45.455 0.00 0.00 0.00 2.10
73 74 2.416836 CGCCGTCTGAAGTTTGGATAGA 60.417 50.000 0.00 0.00 0.00 1.98
74 75 1.927174 CGCCGTCTGAAGTTTGGATAG 59.073 52.381 0.00 0.00 0.00 2.08
75 76 1.546923 TCGCCGTCTGAAGTTTGGATA 59.453 47.619 0.00 0.00 0.00 2.59
76 77 0.320374 TCGCCGTCTGAAGTTTGGAT 59.680 50.000 0.00 0.00 0.00 3.41
77 78 0.319555 CTCGCCGTCTGAAGTTTGGA 60.320 55.000 0.00 0.00 0.00 3.53
78 79 1.901650 GCTCGCCGTCTGAAGTTTGG 61.902 60.000 0.00 0.00 0.00 3.28
79 80 1.493311 GCTCGCCGTCTGAAGTTTG 59.507 57.895 0.00 0.00 0.00 2.93
80 81 1.668151 GGCTCGCCGTCTGAAGTTT 60.668 57.895 0.00 0.00 0.00 2.66
81 82 2.048127 GGCTCGCCGTCTGAAGTT 60.048 61.111 0.00 0.00 0.00 2.66
82 83 4.070552 GGGCTCGCCGTCTGAAGT 62.071 66.667 1.24 0.00 36.85 3.01
94 95 3.682292 AAGGCGAATCCACGGGCTC 62.682 63.158 0.00 0.00 35.30 4.70
95 96 3.682292 GAAGGCGAATCCACGGGCT 62.682 63.158 0.00 0.00 38.31 5.19
96 97 3.202706 GAAGGCGAATCCACGGGC 61.203 66.667 0.00 0.00 37.29 6.13
97 98 2.513897 GGAAGGCGAATCCACGGG 60.514 66.667 0.00 0.00 36.92 5.28
98 99 2.513897 GGGAAGGCGAATCCACGG 60.514 66.667 8.84 0.00 38.80 4.94
99 100 1.521681 GAGGGAAGGCGAATCCACG 60.522 63.158 8.84 0.00 38.80 4.94
100 101 0.462759 CAGAGGGAAGGCGAATCCAC 60.463 60.000 8.84 3.44 38.80 4.02
101 102 1.907739 CAGAGGGAAGGCGAATCCA 59.092 57.895 8.84 0.00 38.80 3.41
102 103 1.524849 GCAGAGGGAAGGCGAATCC 60.525 63.158 0.00 0.00 36.16 3.01
103 104 0.107459 AAGCAGAGGGAAGGCGAATC 60.107 55.000 0.00 0.00 0.00 2.52
104 105 0.393537 CAAGCAGAGGGAAGGCGAAT 60.394 55.000 0.00 0.00 0.00 3.34
105 106 1.003355 CAAGCAGAGGGAAGGCGAA 60.003 57.895 0.00 0.00 0.00 4.70
106 107 2.665000 CAAGCAGAGGGAAGGCGA 59.335 61.111 0.00 0.00 0.00 5.54
107 108 3.130160 GCAAGCAGAGGGAAGGCG 61.130 66.667 0.00 0.00 0.00 5.52
108 109 2.753446 GGCAAGCAGAGGGAAGGC 60.753 66.667 0.00 0.00 0.00 4.35
109 110 2.437359 CGGCAAGCAGAGGGAAGG 60.437 66.667 0.00 0.00 0.00 3.46
110 111 0.890996 AAACGGCAAGCAGAGGGAAG 60.891 55.000 0.00 0.00 0.00 3.46
111 112 0.467290 AAAACGGCAAGCAGAGGGAA 60.467 50.000 0.00 0.00 0.00 3.97
112 113 0.889186 GAAAACGGCAAGCAGAGGGA 60.889 55.000 0.00 0.00 0.00 4.20
113 114 1.581447 GAAAACGGCAAGCAGAGGG 59.419 57.895 0.00 0.00 0.00 4.30
114 115 1.207593 CGAAAACGGCAAGCAGAGG 59.792 57.895 0.00 0.00 0.00 3.69
115 116 1.207593 CCGAAAACGGCAAGCAGAG 59.792 57.895 0.00 0.00 0.00 3.35
116 117 3.339731 CCGAAAACGGCAAGCAGA 58.660 55.556 0.00 0.00 0.00 4.26
133 134 4.162690 CTCCCTACCACCGGCTGC 62.163 72.222 0.00 0.00 0.00 5.25
134 135 3.470888 CCTCCCTACCACCGGCTG 61.471 72.222 0.00 0.00 0.00 4.85
135 136 3.680196 TCCTCCCTACCACCGGCT 61.680 66.667 0.00 0.00 0.00 5.52
136 137 3.155167 CTCCTCCCTACCACCGGC 61.155 72.222 0.00 0.00 0.00 6.13
137 138 0.398664 ATTCTCCTCCCTACCACCGG 60.399 60.000 0.00 0.00 0.00 5.28
138 139 1.041437 GATTCTCCTCCCTACCACCG 58.959 60.000 0.00 0.00 0.00 4.94
139 140 1.425694 GGATTCTCCTCCCTACCACC 58.574 60.000 0.00 0.00 32.53 4.61
147 148 0.688087 AGACACCGGGATTCTCCTCC 60.688 60.000 6.32 0.00 36.57 4.30
148 149 0.747852 GAGACACCGGGATTCTCCTC 59.252 60.000 6.32 0.00 36.57 3.71
149 150 2.903404 GAGACACCGGGATTCTCCT 58.097 57.895 6.32 0.00 36.57 3.69
150 151 1.823976 GGAGACACCGGGATTCTCC 59.176 63.158 24.48 24.48 46.67 3.71
168 169 2.424956 ACCTAAACTACTAACCGGAGCG 59.575 50.000 9.46 0.00 0.00 5.03
169 170 4.179298 CAACCTAAACTACTAACCGGAGC 58.821 47.826 9.46 0.00 0.00 4.70
170 171 4.382362 CCCAACCTAAACTACTAACCGGAG 60.382 50.000 9.46 0.00 0.00 4.63
171 172 3.515104 CCCAACCTAAACTACTAACCGGA 59.485 47.826 9.46 0.00 0.00 5.14
172 173 3.369787 CCCCAACCTAAACTACTAACCGG 60.370 52.174 0.00 0.00 0.00 5.28
173 174 3.865446 CCCCAACCTAAACTACTAACCG 58.135 50.000 0.00 0.00 0.00 4.44
174 175 3.265221 AGCCCCAACCTAAACTACTAACC 59.735 47.826 0.00 0.00 0.00 2.85
175 176 4.564782 AGCCCCAACCTAAACTACTAAC 57.435 45.455 0.00 0.00 0.00 2.34
176 177 5.311385 AGAAAGCCCCAACCTAAACTACTAA 59.689 40.000 0.00 0.00 0.00 2.24
177 178 4.848086 AGAAAGCCCCAACCTAAACTACTA 59.152 41.667 0.00 0.00 0.00 1.82
178 179 3.656264 AGAAAGCCCCAACCTAAACTACT 59.344 43.478 0.00 0.00 0.00 2.57
179 180 4.030314 AGAAAGCCCCAACCTAAACTAC 57.970 45.455 0.00 0.00 0.00 2.73
180 181 5.104235 GGATAGAAAGCCCCAACCTAAACTA 60.104 44.000 0.00 0.00 0.00 2.24
181 182 4.325109 GGATAGAAAGCCCCAACCTAAACT 60.325 45.833 0.00 0.00 0.00 2.66
182 183 3.952323 GGATAGAAAGCCCCAACCTAAAC 59.048 47.826 0.00 0.00 0.00 2.01
183 184 3.856206 AGGATAGAAAGCCCCAACCTAAA 59.144 43.478 0.00 0.00 0.00 1.85
184 185 3.458487 GAGGATAGAAAGCCCCAACCTAA 59.542 47.826 0.00 0.00 0.00 2.69
185 186 3.046374 GAGGATAGAAAGCCCCAACCTA 58.954 50.000 0.00 0.00 0.00 3.08
186 187 1.847088 GAGGATAGAAAGCCCCAACCT 59.153 52.381 0.00 0.00 0.00 3.50
187 188 1.475213 CGAGGATAGAAAGCCCCAACC 60.475 57.143 0.00 0.00 0.00 3.77
188 189 1.475213 CCGAGGATAGAAAGCCCCAAC 60.475 57.143 0.00 0.00 0.00 3.77
189 190 0.837272 CCGAGGATAGAAAGCCCCAA 59.163 55.000 0.00 0.00 0.00 4.12
190 191 0.031515 TCCGAGGATAGAAAGCCCCA 60.032 55.000 0.00 0.00 0.00 4.96
191 192 0.682292 CTCCGAGGATAGAAAGCCCC 59.318 60.000 0.00 0.00 0.00 5.80
192 193 0.682292 CCTCCGAGGATAGAAAGCCC 59.318 60.000 9.01 0.00 37.67 5.19
193 194 1.069358 CACCTCCGAGGATAGAAAGCC 59.931 57.143 21.89 0.00 37.67 4.35
194 195 1.539280 GCACCTCCGAGGATAGAAAGC 60.539 57.143 21.89 8.82 37.67 3.51
195 196 1.269309 CGCACCTCCGAGGATAGAAAG 60.269 57.143 21.89 3.12 37.67 2.62
196 197 0.744874 CGCACCTCCGAGGATAGAAA 59.255 55.000 21.89 0.00 37.67 2.52
197 198 1.107538 CCGCACCTCCGAGGATAGAA 61.108 60.000 21.89 0.00 37.67 2.10
198 199 1.528542 CCGCACCTCCGAGGATAGA 60.529 63.158 21.89 0.00 37.67 1.98
199 200 1.828660 ACCGCACCTCCGAGGATAG 60.829 63.158 21.89 11.06 37.67 2.08
200 201 2.125326 CACCGCACCTCCGAGGATA 61.125 63.158 21.89 0.00 37.67 2.59
201 202 3.461773 CACCGCACCTCCGAGGAT 61.462 66.667 21.89 2.59 37.67 3.24
204 205 4.803426 GAGCACCGCACCTCCGAG 62.803 72.222 0.00 0.00 0.00 4.63
225 226 4.891727 AAGTAGCGCCGCCATCCG 62.892 66.667 4.98 0.00 0.00 4.18
226 227 2.925162 AAGAAGTAGCGCCGCCATCC 62.925 60.000 4.98 0.00 0.00 3.51
227 228 1.491505 GAAGAAGTAGCGCCGCCATC 61.492 60.000 4.98 0.00 0.00 3.51
228 229 1.521681 GAAGAAGTAGCGCCGCCAT 60.522 57.895 4.98 0.00 0.00 4.40
229 230 2.125673 GAAGAAGTAGCGCCGCCA 60.126 61.111 4.98 0.00 0.00 5.69
230 231 3.255379 CGAAGAAGTAGCGCCGCC 61.255 66.667 4.98 0.00 0.00 6.13
231 232 2.202570 TCGAAGAAGTAGCGCCGC 60.203 61.111 2.29 0.00 0.00 6.53
232 233 0.456312 AACTCGAAGAAGTAGCGCCG 60.456 55.000 2.29 0.00 34.09 6.46
233 234 1.390463 CAAACTCGAAGAAGTAGCGCC 59.610 52.381 2.29 0.00 34.09 6.53
234 235 2.059541 ACAAACTCGAAGAAGTAGCGC 58.940 47.619 0.00 0.00 34.09 5.92
235 236 3.566523 AGACAAACTCGAAGAAGTAGCG 58.433 45.455 0.00 0.00 34.09 4.26
236 237 4.386350 GGAAGACAAACTCGAAGAAGTAGC 59.614 45.833 0.00 0.00 34.09 3.58
237 238 4.924462 GGGAAGACAAACTCGAAGAAGTAG 59.076 45.833 0.00 0.00 34.09 2.57
238 239 4.558095 CGGGAAGACAAACTCGAAGAAGTA 60.558 45.833 0.00 0.00 34.09 2.24
239 240 3.729966 GGGAAGACAAACTCGAAGAAGT 58.270 45.455 0.00 0.00 34.09 3.01
240 241 2.731976 CGGGAAGACAAACTCGAAGAAG 59.268 50.000 0.00 0.00 34.09 2.85
241 242 2.547218 CCGGGAAGACAAACTCGAAGAA 60.547 50.000 0.00 0.00 34.09 2.52
242 243 1.000506 CCGGGAAGACAAACTCGAAGA 59.999 52.381 0.00 0.00 0.00 2.87
243 244 1.429463 CCGGGAAGACAAACTCGAAG 58.571 55.000 0.00 0.00 0.00 3.79
244 245 0.601841 GCCGGGAAGACAAACTCGAA 60.602 55.000 2.18 0.00 0.00 3.71
245 246 1.005394 GCCGGGAAGACAAACTCGA 60.005 57.895 2.18 0.00 0.00 4.04
246 247 1.004918 AGCCGGGAAGACAAACTCG 60.005 57.895 2.18 0.00 0.00 4.18
247 248 0.321996 AGAGCCGGGAAGACAAACTC 59.678 55.000 2.18 0.00 0.00 3.01
248 249 1.640917 TAGAGCCGGGAAGACAAACT 58.359 50.000 2.18 0.00 0.00 2.66
249 250 2.028385 TCTTAGAGCCGGGAAGACAAAC 60.028 50.000 2.18 0.00 0.00 2.93
250 251 2.028385 GTCTTAGAGCCGGGAAGACAAA 60.028 50.000 17.04 0.00 45.49 2.83
251 252 1.549170 GTCTTAGAGCCGGGAAGACAA 59.451 52.381 17.04 0.00 45.49 3.18
252 253 1.183549 GTCTTAGAGCCGGGAAGACA 58.816 55.000 17.04 0.00 45.49 3.41
253 254 0.460722 GGTCTTAGAGCCGGGAAGAC 59.539 60.000 14.73 14.73 45.46 3.01
254 255 0.686769 GGGTCTTAGAGCCGGGAAGA 60.687 60.000 15.01 0.00 40.45 2.87
255 256 1.823976 GGGTCTTAGAGCCGGGAAG 59.176 63.158 15.01 0.00 40.45 3.46
256 257 4.045469 GGGTCTTAGAGCCGGGAA 57.955 61.111 15.01 0.00 40.45 3.97
261 262 0.179142 GTTCGTCGGGTCTTAGAGCC 60.179 60.000 19.55 19.55 45.64 4.70
262 263 0.524862 TGTTCGTCGGGTCTTAGAGC 59.475 55.000 2.39 2.39 0.00 4.09
263 264 1.135460 GGTGTTCGTCGGGTCTTAGAG 60.135 57.143 0.00 0.00 0.00 2.43
264 265 0.883833 GGTGTTCGTCGGGTCTTAGA 59.116 55.000 0.00 0.00 0.00 2.10
265 266 0.599558 TGGTGTTCGTCGGGTCTTAG 59.400 55.000 0.00 0.00 0.00 2.18
266 267 0.314935 GTGGTGTTCGTCGGGTCTTA 59.685 55.000 0.00 0.00 0.00 2.10
267 268 1.068585 GTGGTGTTCGTCGGGTCTT 59.931 57.895 0.00 0.00 0.00 3.01
268 269 2.732658 GTGGTGTTCGTCGGGTCT 59.267 61.111 0.00 0.00 0.00 3.85
269 270 2.732094 CGTGGTGTTCGTCGGGTC 60.732 66.667 0.00 0.00 0.00 4.46
270 271 4.955774 GCGTGGTGTTCGTCGGGT 62.956 66.667 0.00 0.00 0.00 5.28
272 273 4.657824 AGGCGTGGTGTTCGTCGG 62.658 66.667 0.00 0.00 37.99 4.79
273 274 3.103911 GAGGCGTGGTGTTCGTCG 61.104 66.667 0.00 0.00 37.99 5.12
274 275 2.028484 TGAGGCGTGGTGTTCGTC 59.972 61.111 0.00 0.00 0.00 4.20
275 276 2.279918 GTGAGGCGTGGTGTTCGT 60.280 61.111 0.00 0.00 0.00 3.85
276 277 1.831389 CTTGTGAGGCGTGGTGTTCG 61.831 60.000 0.00 0.00 0.00 3.95
277 278 1.941812 CTTGTGAGGCGTGGTGTTC 59.058 57.895 0.00 0.00 0.00 3.18
278 279 2.186826 GCTTGTGAGGCGTGGTGTT 61.187 57.895 0.00 0.00 0.00 3.32
279 280 2.591715 GCTTGTGAGGCGTGGTGT 60.592 61.111 0.00 0.00 0.00 4.16
280 281 2.591429 TGCTTGTGAGGCGTGGTG 60.591 61.111 0.00 0.00 0.00 4.17
281 282 2.281070 CTGCTTGTGAGGCGTGGT 60.281 61.111 0.00 0.00 0.00 4.16
282 283 3.730761 GCTGCTTGTGAGGCGTGG 61.731 66.667 0.00 0.00 0.00 4.94
283 284 3.730761 GGCTGCTTGTGAGGCGTG 61.731 66.667 0.00 0.00 0.00 5.34
284 285 3.557903 ATGGCTGCTTGTGAGGCGT 62.558 57.895 0.00 0.00 38.83 5.68
285 286 2.749044 ATGGCTGCTTGTGAGGCG 60.749 61.111 0.00 0.00 38.83 5.52
286 287 2.707849 CCATGGCTGCTTGTGAGGC 61.708 63.158 0.00 0.00 36.55 4.70
287 288 1.303888 ACCATGGCTGCTTGTGAGG 60.304 57.895 13.04 0.00 0.00 3.86
288 289 1.310933 GGACCATGGCTGCTTGTGAG 61.311 60.000 13.04 0.00 0.00 3.51
289 290 1.303561 GGACCATGGCTGCTTGTGA 60.304 57.895 13.04 0.00 0.00 3.58
290 291 1.592400 CTGGACCATGGCTGCTTGTG 61.592 60.000 13.04 0.00 0.00 3.33
291 292 1.303888 CTGGACCATGGCTGCTTGT 60.304 57.895 13.04 0.00 0.00 3.16
292 293 1.001764 TCTGGACCATGGCTGCTTG 60.002 57.895 13.04 0.00 0.00 4.01
293 294 1.001641 GTCTGGACCATGGCTGCTT 60.002 57.895 13.04 0.00 0.00 3.91
294 295 2.226315 TGTCTGGACCATGGCTGCT 61.226 57.895 13.04 0.00 0.00 4.24
295 296 2.042831 GTGTCTGGACCATGGCTGC 61.043 63.158 13.04 5.24 0.00 5.25
296 297 1.742880 CGTGTCTGGACCATGGCTG 60.743 63.158 13.04 0.39 0.00 4.85
297 298 1.892819 CTCGTGTCTGGACCATGGCT 61.893 60.000 13.04 0.00 0.00 4.75
298 299 1.448540 CTCGTGTCTGGACCATGGC 60.449 63.158 13.04 4.47 0.00 4.40
299 300 1.448540 GCTCGTGTCTGGACCATGG 60.449 63.158 11.19 11.19 0.00 3.66
300 301 1.016130 GTGCTCGTGTCTGGACCATG 61.016 60.000 0.00 0.00 0.00 3.66
301 302 1.293498 GTGCTCGTGTCTGGACCAT 59.707 57.895 0.00 0.00 0.00 3.55
302 303 2.734591 GTGCTCGTGTCTGGACCA 59.265 61.111 0.00 0.00 0.00 4.02
303 304 2.048127 GGTGCTCGTGTCTGGACC 60.048 66.667 0.00 0.00 37.50 4.46
304 305 1.664965 GTGGTGCTCGTGTCTGGAC 60.665 63.158 0.00 0.00 0.00 4.02
305 306 2.734591 GTGGTGCTCGTGTCTGGA 59.265 61.111 0.00 0.00 0.00 3.86
306 307 2.357517 GGTGGTGCTCGTGTCTGG 60.358 66.667 0.00 0.00 0.00 3.86
307 308 1.665916 CTGGTGGTGCTCGTGTCTG 60.666 63.158 0.00 0.00 0.00 3.51
308 309 1.188219 ATCTGGTGGTGCTCGTGTCT 61.188 55.000 0.00 0.00 0.00 3.41
309 310 0.737715 GATCTGGTGGTGCTCGTGTC 60.738 60.000 0.00 0.00 0.00 3.67
310 311 1.293498 GATCTGGTGGTGCTCGTGT 59.707 57.895 0.00 0.00 0.00 4.49
311 312 1.448540 GGATCTGGTGGTGCTCGTG 60.449 63.158 0.00 0.00 0.00 4.35
312 313 1.892819 CTGGATCTGGTGGTGCTCGT 61.893 60.000 0.00 0.00 0.00 4.18
313 314 1.153489 CTGGATCTGGTGGTGCTCG 60.153 63.158 0.00 0.00 0.00 5.03
314 315 0.835941 ATCTGGATCTGGTGGTGCTC 59.164 55.000 0.00 0.00 0.00 4.26
315 316 0.835941 GATCTGGATCTGGTGGTGCT 59.164 55.000 3.58 0.00 35.04 4.40
316 317 0.531532 CGATCTGGATCTGGTGGTGC 60.532 60.000 8.65 0.00 35.72 5.01
317 318 0.105593 CCGATCTGGATCTGGTGGTG 59.894 60.000 8.65 0.00 42.00 4.17
318 319 1.050988 CCCGATCTGGATCTGGTGGT 61.051 60.000 11.31 0.00 42.00 4.16
319 320 0.760567 TCCCGATCTGGATCTGGTGG 60.761 60.000 16.65 7.69 41.30 4.61
320 321 1.346062 ATCCCGATCTGGATCTGGTG 58.654 55.000 12.58 10.07 41.38 4.17
321 322 3.880174 ATCCCGATCTGGATCTGGT 57.120 52.632 12.58 0.00 41.38 4.00
327 328 2.203640 CCCCGATCCCGATCTGGA 60.204 66.667 14.71 8.46 42.61 3.86
328 329 2.524394 ACCCCGATCCCGATCTGG 60.524 66.667 7.90 7.90 40.55 3.86
329 330 1.399744 TTGACCCCGATCCCGATCTG 61.400 60.000 3.35 0.00 38.22 2.90
330 331 1.075525 TTGACCCCGATCCCGATCT 60.076 57.895 3.35 0.00 38.22 2.75
331 332 1.367840 CTTGACCCCGATCCCGATC 59.632 63.158 0.00 0.00 38.22 3.69
332 333 2.140792 CCTTGACCCCGATCCCGAT 61.141 63.158 0.00 0.00 38.22 4.18
333 334 2.762459 CCTTGACCCCGATCCCGA 60.762 66.667 0.00 0.00 38.22 5.14
334 335 3.861797 CCCTTGACCCCGATCCCG 61.862 72.222 0.00 0.00 0.00 5.14
335 336 4.191015 GCCCTTGACCCCGATCCC 62.191 72.222 0.00 0.00 0.00 3.85
336 337 4.191015 GGCCCTTGACCCCGATCC 62.191 72.222 0.00 0.00 0.00 3.36
337 338 4.191015 GGGCCCTTGACCCCGATC 62.191 72.222 17.04 0.00 42.01 3.69
367 368 4.814294 GTGGTGCTACCTCCGCGG 62.814 72.222 22.12 22.12 39.58 6.46
368 369 3.760035 AGTGGTGCTACCTCCGCG 61.760 66.667 0.00 0.00 39.58 6.46
369 370 2.125512 CAGTGGTGCTACCTCCGC 60.126 66.667 6.83 0.00 39.58 5.54
370 371 1.982395 TCCAGTGGTGCTACCTCCG 60.982 63.158 9.54 0.00 39.58 4.63
371 372 1.597461 GTCCAGTGGTGCTACCTCC 59.403 63.158 9.54 0.00 39.58 4.30
372 373 1.215647 CGTCCAGTGGTGCTACCTC 59.784 63.158 9.54 3.74 39.58 3.85
373 374 2.283529 CCGTCCAGTGGTGCTACCT 61.284 63.158 9.54 0.00 39.58 3.08
374 375 2.264794 CCGTCCAGTGGTGCTACC 59.735 66.667 9.54 0.00 39.22 3.18
375 376 3.057337 ACCGTCCAGTGGTGCTAC 58.943 61.111 9.54 0.00 38.60 3.58
400 401 3.465403 CTCTGGCGAGGGTGGAGG 61.465 72.222 0.00 0.00 33.51 4.30
408 409 4.200283 GCTCGGTCCTCTGGCGAG 62.200 72.222 0.00 0.00 38.00 5.03
409 410 3.339738 TAGCTCGGTCCTCTGGCGA 62.340 63.158 0.00 0.00 0.00 5.54
410 411 2.829003 TAGCTCGGTCCTCTGGCG 60.829 66.667 0.00 0.00 0.00 5.69
411 412 1.755008 ACTAGCTCGGTCCTCTGGC 60.755 63.158 0.00 0.00 0.00 4.85
412 413 0.681564 ACACTAGCTCGGTCCTCTGG 60.682 60.000 0.00 0.00 0.00 3.86
413 414 0.736053 GACACTAGCTCGGTCCTCTG 59.264 60.000 0.00 0.00 0.00 3.35
414 415 0.745128 CGACACTAGCTCGGTCCTCT 60.745 60.000 0.00 0.00 0.00 3.69
415 416 1.716826 CCGACACTAGCTCGGTCCTC 61.717 65.000 17.61 0.00 44.82 3.71
416 417 1.749638 CCGACACTAGCTCGGTCCT 60.750 63.158 17.61 0.00 44.82 3.85
417 418 2.799371 CCGACACTAGCTCGGTCC 59.201 66.667 17.61 0.00 44.82 4.46
419 420 2.823376 AGCTCCGACACTAGCTCGGT 62.823 60.000 22.54 7.13 45.92 4.69
420 421 2.115911 AGCTCCGACACTAGCTCGG 61.116 63.158 19.15 19.15 45.92 4.63
421 422 3.503749 AGCTCCGACACTAGCTCG 58.496 61.111 0.00 3.87 45.92 5.03
462 463 3.724914 CTTTCTCTCCCTCGGCGGC 62.725 68.421 7.21 0.00 0.00 6.53
463 464 2.496817 CTTTCTCTCCCTCGGCGG 59.503 66.667 7.21 0.00 0.00 6.13
464 465 2.496817 CCTTTCTCTCCCTCGGCG 59.503 66.667 0.00 0.00 0.00 6.46
465 466 1.686110 TCCCTTTCTCTCCCTCGGC 60.686 63.158 0.00 0.00 0.00 5.54
466 467 0.614979 TGTCCCTTTCTCTCCCTCGG 60.615 60.000 0.00 0.00 0.00 4.63
467 468 0.533032 GTGTCCCTTTCTCTCCCTCG 59.467 60.000 0.00 0.00 0.00 4.63
468 469 0.533032 CGTGTCCCTTTCTCTCCCTC 59.467 60.000 0.00 0.00 0.00 4.30
469 470 1.545706 GCGTGTCCCTTTCTCTCCCT 61.546 60.000 0.00 0.00 0.00 4.20
470 471 1.079057 GCGTGTCCCTTTCTCTCCC 60.079 63.158 0.00 0.00 0.00 4.30
471 472 1.079057 GGCGTGTCCCTTTCTCTCC 60.079 63.158 0.00 0.00 0.00 3.71
472 473 0.390472 CTGGCGTGTCCCTTTCTCTC 60.390 60.000 0.00 0.00 0.00 3.20
473 474 1.674057 CTGGCGTGTCCCTTTCTCT 59.326 57.895 0.00 0.00 0.00 3.10
474 475 1.376037 CCTGGCGTGTCCCTTTCTC 60.376 63.158 0.00 0.00 0.00 2.87
475 476 2.750350 CCTGGCGTGTCCCTTTCT 59.250 61.111 0.00 0.00 0.00 2.52
476 477 2.359975 CCCTGGCGTGTCCCTTTC 60.360 66.667 0.00 0.00 0.00 2.62
477 478 2.852075 TCCCTGGCGTGTCCCTTT 60.852 61.111 0.00 0.00 0.00 3.11
478 479 3.322466 CTCCCTGGCGTGTCCCTT 61.322 66.667 0.00 0.00 0.00 3.95
479 480 4.316823 TCTCCCTGGCGTGTCCCT 62.317 66.667 0.00 0.00 0.00 4.20
480 481 3.775654 CTCTCCCTGGCGTGTCCC 61.776 72.222 0.00 0.00 0.00 4.46
481 482 3.775654 CCTCTCCCTGGCGTGTCC 61.776 72.222 0.00 0.00 0.00 4.02
482 483 4.459089 GCCTCTCCCTGGCGTGTC 62.459 72.222 0.00 0.00 41.03 3.67
492 493 4.154347 CTGCGACTGGGCCTCTCC 62.154 72.222 4.53 0.00 0.00 3.71
493 494 4.828925 GCTGCGACTGGGCCTCTC 62.829 72.222 4.53 0.00 0.00 3.20
500 501 4.694233 AGTGCTGGCTGCGACTGG 62.694 66.667 16.25 0.00 46.63 4.00
501 502 3.420606 CAGTGCTGGCTGCGACTG 61.421 66.667 23.21 23.21 46.63 3.51
551 552 3.083997 CTCCCTTCCCCCTCACCG 61.084 72.222 0.00 0.00 0.00 4.94
552 553 2.692741 CCTCCCTTCCCCCTCACC 60.693 72.222 0.00 0.00 0.00 4.02
553 554 1.541620 AACCTCCCTTCCCCCTCAC 60.542 63.158 0.00 0.00 0.00 3.51
554 555 1.541368 CAACCTCCCTTCCCCCTCA 60.541 63.158 0.00 0.00 0.00 3.86
555 556 2.309504 CCAACCTCCCTTCCCCCTC 61.310 68.421 0.00 0.00 0.00 4.30
556 557 2.204306 CCAACCTCCCTTCCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
557 558 2.204244 TCCAACCTCCCTTCCCCC 60.204 66.667 0.00 0.00 0.00 5.40
558 559 2.309504 CCTCCAACCTCCCTTCCCC 61.310 68.421 0.00 0.00 0.00 4.81
559 560 2.309504 CCCTCCAACCTCCCTTCCC 61.310 68.421 0.00 0.00 0.00 3.97
560 561 2.309504 CCCCTCCAACCTCCCTTCC 61.310 68.421 0.00 0.00 0.00 3.46
561 562 2.309504 CCCCCTCCAACCTCCCTTC 61.310 68.421 0.00 0.00 0.00 3.46
562 563 2.204306 CCCCCTCCAACCTCCCTT 60.204 66.667 0.00 0.00 0.00 3.95
582 583 4.851179 CTAACTTCCCCCGCCGCC 62.851 72.222 0.00 0.00 0.00 6.13
583 584 4.851179 CCTAACTTCCCCCGCCGC 62.851 72.222 0.00 0.00 0.00 6.53
584 585 4.171103 CCCTAACTTCCCCCGCCG 62.171 72.222 0.00 0.00 0.00 6.46
585 586 2.547640 GAACCCTAACTTCCCCCGCC 62.548 65.000 0.00 0.00 0.00 6.13
586 587 1.077930 GAACCCTAACTTCCCCCGC 60.078 63.158 0.00 0.00 0.00 6.13
587 588 1.605992 GGAACCCTAACTTCCCCCG 59.394 63.158 0.00 0.00 32.31 5.73
601 602 0.175989 CTAAGGCGACTCAGGGGAAC 59.824 60.000 0.00 0.00 42.68 3.62
602 603 0.040646 TCTAAGGCGACTCAGGGGAA 59.959 55.000 0.00 0.00 42.68 3.97
603 604 0.395862 CTCTAAGGCGACTCAGGGGA 60.396 60.000 0.00 0.00 42.68 4.81
604 605 0.395862 TCTCTAAGGCGACTCAGGGG 60.396 60.000 0.00 0.00 42.68 4.79
605 606 0.741915 GTCTCTAAGGCGACTCAGGG 59.258 60.000 0.00 0.00 42.68 4.45
613 614 2.049475 CTCGGTCCGTCTCTAAGGCG 62.049 65.000 11.88 0.00 44.05 5.52
614 615 1.726533 CCTCGGTCCGTCTCTAAGGC 61.727 65.000 11.88 0.00 0.00 4.35
615 616 1.102222 CCCTCGGTCCGTCTCTAAGG 61.102 65.000 11.88 9.27 0.00 2.69
616 617 0.107312 TCCCTCGGTCCGTCTCTAAG 60.107 60.000 11.88 0.00 0.00 2.18
617 618 0.393537 GTCCCTCGGTCCGTCTCTAA 60.394 60.000 11.88 0.00 0.00 2.10
618 619 1.222936 GTCCCTCGGTCCGTCTCTA 59.777 63.158 11.88 0.00 0.00 2.43
619 620 2.045143 GTCCCTCGGTCCGTCTCT 60.045 66.667 11.88 0.00 0.00 3.10
620 621 3.507009 CGTCCCTCGGTCCGTCTC 61.507 72.222 11.88 0.00 35.71 3.36
638 639 1.716028 AACACACACCCTTCTCCCCC 61.716 60.000 0.00 0.00 0.00 5.40
639 640 0.537371 CAACACACACCCTTCTCCCC 60.537 60.000 0.00 0.00 0.00 4.81
640 641 0.472471 TCAACACACACCCTTCTCCC 59.528 55.000 0.00 0.00 0.00 4.30
641 642 1.134220 TGTCAACACACACCCTTCTCC 60.134 52.381 0.00 0.00 0.00 3.71
642 643 2.213499 CTGTCAACACACACCCTTCTC 58.787 52.381 0.00 0.00 0.00 2.87
643 644 1.747206 GCTGTCAACACACACCCTTCT 60.747 52.381 0.00 0.00 0.00 2.85
644 645 0.663153 GCTGTCAACACACACCCTTC 59.337 55.000 0.00 0.00 0.00 3.46
645 646 0.751643 GGCTGTCAACACACACCCTT 60.752 55.000 0.00 0.00 0.00 3.95
646 647 1.152963 GGCTGTCAACACACACCCT 60.153 57.895 0.00 0.00 0.00 4.34
647 648 1.447317 CTGGCTGTCAACACACACCC 61.447 60.000 0.00 0.00 0.00 4.61
648 649 2.024918 CTGGCTGTCAACACACACC 58.975 57.895 0.00 0.00 0.00 4.16
649 650 1.097547 AGCTGGCTGTCAACACACAC 61.098 55.000 0.00 0.00 0.00 3.82
650 651 0.467804 TAGCTGGCTGTCAACACACA 59.532 50.000 5.25 0.00 0.00 3.72
651 652 1.813513 ATAGCTGGCTGTCAACACAC 58.186 50.000 5.25 0.00 0.00 3.82
652 653 2.567169 AGTATAGCTGGCTGTCAACACA 59.433 45.455 5.25 0.00 0.00 3.72
653 654 3.252974 AGTATAGCTGGCTGTCAACAC 57.747 47.619 5.25 0.00 0.00 3.32
654 655 3.369471 GGAAGTATAGCTGGCTGTCAACA 60.369 47.826 5.25 0.00 0.00 3.33
655 656 3.198872 GGAAGTATAGCTGGCTGTCAAC 58.801 50.000 5.25 0.00 0.00 3.18
656 657 2.170607 GGGAAGTATAGCTGGCTGTCAA 59.829 50.000 5.25 0.00 0.00 3.18
657 658 1.762957 GGGAAGTATAGCTGGCTGTCA 59.237 52.381 5.25 0.00 0.00 3.58
658 659 1.070914 GGGGAAGTATAGCTGGCTGTC 59.929 57.143 5.25 0.00 0.00 3.51
659 660 1.132500 GGGGAAGTATAGCTGGCTGT 58.868 55.000 5.25 0.96 0.00 4.40
660 661 1.428869 AGGGGAAGTATAGCTGGCTG 58.571 55.000 5.25 0.00 0.00 4.85
661 662 2.198334 AAGGGGAAGTATAGCTGGCT 57.802 50.000 0.00 0.00 0.00 4.75
662 663 3.391626 AGTTAAGGGGAAGTATAGCTGGC 59.608 47.826 0.00 0.00 0.00 4.85
663 664 5.632034 AAGTTAAGGGGAAGTATAGCTGG 57.368 43.478 0.00 0.00 0.00 4.85
694 695 5.106515 TGTTGTTGCGAAAATGATCCGAATA 60.107 36.000 0.00 0.00 0.00 1.75
697 698 2.550180 TGTTGTTGCGAAAATGATCCGA 59.450 40.909 0.00 0.00 0.00 4.55
698 699 2.927429 TGTTGTTGCGAAAATGATCCG 58.073 42.857 0.00 0.00 0.00 4.18
723 727 4.887190 AACGGGCGCCTGGTGTTT 62.887 61.111 37.32 20.78 0.00 2.83
764 774 2.428925 GCGGGGAGGGAATCGTGTA 61.429 63.158 0.00 0.00 0.00 2.90
769 779 4.191015 GGTGGCGGGGAGGGAATC 62.191 72.222 0.00 0.00 0.00 2.52
877 887 1.604278 ACGGCAGCTCTTGTTTTTCTC 59.396 47.619 0.00 0.00 0.00 2.87
878 888 1.680338 ACGGCAGCTCTTGTTTTTCT 58.320 45.000 0.00 0.00 0.00 2.52
885 906 1.136336 GTCGTAAAACGGCAGCTCTTG 60.136 52.381 0.00 0.00 46.84 3.02
887 908 2.823628 GTCGTAAAACGGCAGCTCT 58.176 52.632 0.00 0.00 46.84 4.09
896 917 4.918583 CCTGTCTCTCTTCTGTCGTAAAAC 59.081 45.833 0.00 0.00 0.00 2.43
1222 1243 1.002624 ATCCTCCGGCGCTGAAAAA 60.003 52.632 20.25 0.22 0.00 1.94
1380 1402 1.138671 GAGCTCACCTGAGACGCTC 59.861 63.158 9.40 3.23 44.74 5.03
1406 1428 2.004583 TACGCACATTTCTCCCGAAG 57.995 50.000 0.00 0.00 0.00 3.79
1422 1444 0.102300 TGGATCACCACGAGCATACG 59.898 55.000 0.00 0.00 41.77 3.06
1477 1515 1.019673 GCAATGCCGATCTGTGACAT 58.980 50.000 0.00 0.00 0.00 3.06
1482 1520 3.566853 CGCGCAATGCCGATCTGT 61.567 61.111 8.75 0.00 42.08 3.41
1501 1542 2.124109 TCAGGCTCTCGATCCGCT 60.124 61.111 0.00 0.00 0.00 5.52
1628 1672 1.066152 TCATCTCGACAAGATCAGCCG 59.934 52.381 0.00 0.00 43.13 5.52
1642 1687 2.164827 TGCAACACAATGCCATCATCTC 59.835 45.455 0.00 0.00 45.83 2.75
1645 1690 1.206132 CCTGCAACACAATGCCATCAT 59.794 47.619 0.00 0.00 45.83 2.45
2367 2501 1.355563 CATCTGCTTGCTGGCGATG 59.644 57.895 15.03 15.03 37.14 3.84
2373 2507 2.707849 GCCCACCATCTGCTTGCTG 61.708 63.158 0.00 0.00 0.00 4.41
2715 2851 7.332678 AGAGCCTATGATTTTGTTTCATTTTGC 59.667 33.333 0.00 0.00 35.50 3.68
2962 3102 0.391661 TCTTGTCAGCCGGCAGAATC 60.392 55.000 31.54 15.84 0.00 2.52
2970 3111 5.007724 GGATAAATAGGTTTCTTGTCAGCCG 59.992 44.000 0.00 0.00 0.00 5.52
2987 3129 5.314718 TCATCAGCTGTCCATGGATAAAT 57.685 39.130 19.62 3.35 0.00 1.40
3026 3168 1.074951 CCACCCCTTGAACACCCTC 59.925 63.158 0.00 0.00 0.00 4.30
3180 3323 7.364408 CCTGAAAATTTCATGGTTCAGATCCAT 60.364 37.037 9.02 7.15 46.45 3.41
3209 3352 3.074412 CCTTACGTCAGAGTTTGGCAAT 58.926 45.455 0.00 0.00 0.00 3.56
3233 3376 1.925255 ACATGACATGGAGATGGGGTT 59.075 47.619 19.39 0.00 33.39 4.11
3237 3380 2.896745 TCGACATGACATGGAGATGG 57.103 50.000 19.39 0.37 33.39 3.51
3238 3381 2.479275 GCATCGACATGACATGGAGATG 59.521 50.000 30.51 30.51 44.05 2.90
3239 3382 2.103601 TGCATCGACATGACATGGAGAT 59.896 45.455 19.39 18.03 33.10 2.75
3240 3383 1.481772 TGCATCGACATGACATGGAGA 59.518 47.619 19.39 16.72 30.57 3.71
3248 3391 1.810853 CGCACCTGCATCGACATGA 60.811 57.895 0.00 0.00 42.21 3.07
3475 3618 6.255887 GGATCACTATAACAGGTCAAAAGTCG 59.744 42.308 0.00 0.00 0.00 4.18
3577 3721 6.502136 AGAAAAAGTACTAGGCATGAAAGC 57.498 37.500 0.00 0.00 0.00 3.51
3591 3735 7.333528 ACATTTCAGTCAGCAAGAAAAAGTA 57.666 32.000 0.00 0.00 35.20 2.24
3667 3812 5.397672 CCTCAGGGAGTACTAGCTAGTGTTA 60.398 48.000 32.21 13.30 34.60 2.41
3669 3814 3.117813 CCTCAGGGAGTACTAGCTAGTGT 60.118 52.174 32.21 20.85 34.60 3.55
3670 3815 3.136809 TCCTCAGGGAGTACTAGCTAGTG 59.863 52.174 32.21 16.13 36.57 2.74
3671 3816 3.395604 TCCTCAGGGAGTACTAGCTAGT 58.604 50.000 28.50 28.50 36.57 2.57
3686 3831 7.982354 CCCTTTCTACTGTTATTTACTCCTCAG 59.018 40.741 0.00 0.00 0.00 3.35
3710 3855 5.644206 GGACTTCTGTCTTCTTATTCAACCC 59.356 44.000 0.00 0.00 42.54 4.11
3769 3938 4.157105 GCCTTTCCGCCATTTCTTAACTTA 59.843 41.667 0.00 0.00 0.00 2.24
3837 4007 8.186821 CCTATTGCTCTTTCAAAACTATTGGAG 58.813 37.037 0.00 0.00 0.00 3.86
3846 4016 6.832520 TGTATGCCTATTGCTCTTTCAAAA 57.167 33.333 0.00 0.00 42.00 2.44
3849 4019 6.832520 TTTTGTATGCCTATTGCTCTTTCA 57.167 33.333 0.00 0.00 42.00 2.69
3850 4020 7.274250 CAGTTTTTGTATGCCTATTGCTCTTTC 59.726 37.037 0.00 0.00 42.00 2.62
3864 4034 5.957842 TTGCTACCCTCAGTTTTTGTATG 57.042 39.130 0.00 0.00 0.00 2.39
3873 4043 7.630082 TGATAAAATACTTTGCTACCCTCAGT 58.370 34.615 0.00 0.00 0.00 3.41
3942 4112 0.759060 GCCCCCTTGTGACCTTGTTT 60.759 55.000 0.00 0.00 0.00 2.83
3977 4147 2.283173 GGGGGAAGTGTTGCCTGG 60.283 66.667 0.00 0.00 41.52 4.45
4039 4209 3.322514 ACCACAGTGAATTCCCACG 57.677 52.632 0.62 0.00 41.67 4.94
4091 4261 4.347292 TCTGATCCTTGAAGCTATCAGCAT 59.653 41.667 21.42 3.01 45.56 3.79
4106 4276 2.194859 AGTGGCAGTTCATCTGATCCT 58.805 47.619 0.00 0.00 46.27 3.24
4167 4337 5.473504 AGACCGAATCAAGCACTGTAAAATT 59.526 36.000 0.00 0.00 0.00 1.82
4212 4412 4.344359 AAGAAGAAACAGAGACTGGGTC 57.656 45.455 0.00 0.00 35.51 4.46
4213 4413 4.410555 AGAAAGAAGAAACAGAGACTGGGT 59.589 41.667 0.00 0.00 35.51 4.51
4214 4414 4.967036 AGAAAGAAGAAACAGAGACTGGG 58.033 43.478 0.00 0.00 35.51 4.45
4215 4415 6.934048 AAAGAAAGAAGAAACAGAGACTGG 57.066 37.500 0.00 0.00 35.51 4.00
4216 4416 7.978982 TGAAAAGAAAGAAGAAACAGAGACTG 58.021 34.615 0.00 0.00 37.52 3.51
4217 4417 8.043710 TCTGAAAAGAAAGAAGAAACAGAGACT 58.956 33.333 0.00 0.00 0.00 3.24
4218 4418 8.202745 TCTGAAAAGAAAGAAGAAACAGAGAC 57.797 34.615 0.00 0.00 0.00 3.36
4219 4419 8.792830 TTCTGAAAAGAAAGAAGAAACAGAGA 57.207 30.769 0.00 0.00 34.28 3.10
4224 4424 7.027760 ACCGTTTCTGAAAAGAAAGAAGAAAC 58.972 34.615 16.02 13.83 46.79 2.78
4225 4425 7.120726 AGACCGTTTCTGAAAAGAAAGAAGAAA 59.879 33.333 16.02 0.00 38.32 2.52
4226 4426 6.598064 AGACCGTTTCTGAAAAGAAAGAAGAA 59.402 34.615 16.02 0.00 38.32 2.52
4227 4427 6.113411 AGACCGTTTCTGAAAAGAAAGAAGA 58.887 36.000 16.02 0.00 38.32 2.87
4228 4428 6.037172 TGAGACCGTTTCTGAAAAGAAAGAAG 59.963 38.462 16.02 2.78 38.32 2.85
4229 4429 5.878116 TGAGACCGTTTCTGAAAAGAAAGAA 59.122 36.000 16.02 0.00 38.32 2.52
4230 4430 5.424757 TGAGACCGTTTCTGAAAAGAAAGA 58.575 37.500 16.02 0.00 38.32 2.52
4231 4431 5.294552 ACTGAGACCGTTTCTGAAAAGAAAG 59.705 40.000 16.02 8.82 38.32 2.62
4232 4432 5.183228 ACTGAGACCGTTTCTGAAAAGAAA 58.817 37.500 16.02 0.00 33.22 2.52
4233 4433 4.766375 ACTGAGACCGTTTCTGAAAAGAA 58.234 39.130 16.02 0.00 33.22 2.52
4234 4434 4.402056 ACTGAGACCGTTTCTGAAAAGA 57.598 40.909 16.02 0.00 33.22 2.52
4235 4435 5.485662 AAACTGAGACCGTTTCTGAAAAG 57.514 39.130 4.09 6.75 33.22 2.27
4236 4436 5.479716 GAAACTGAGACCGTTTCTGAAAA 57.520 39.130 4.09 0.00 44.12 2.29
4282 4482 4.088634 TCAGGGAAGAGGGGAGAAAATA 57.911 45.455 0.00 0.00 0.00 1.40
4301 4501 2.755655 GGAAGAGACCGAGACTTCATCA 59.244 50.000 0.00 0.00 40.89 3.07
4345 4545 2.158986 ACTGCATCGGAGAAGGAAGATG 60.159 50.000 0.00 0.42 43.58 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.