Multiple sequence alignment - TraesCS6A01G301800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G301800 chr6A 100.000 4344 0 0 1 4344 535155638 535151295 0.000000e+00 8022.0
1 TraesCS6A01G301800 chr6D 93.349 1744 55 28 1803 3513 388539668 388537953 0.000000e+00 2521.0
2 TraesCS6A01G301800 chr6D 94.377 1565 47 13 215 1761 388541203 388539662 0.000000e+00 2364.0
3 TraesCS6A01G301800 chr6B 93.762 1571 69 18 218 1774 581083098 581081543 0.000000e+00 2331.0
4 TraesCS6A01G301800 chr6B 90.688 1729 71 29 1803 3494 581081249 581079574 0.000000e+00 2218.0
5 TraesCS6A01G301800 chr6B 90.710 183 13 1 18 196 46500646 46500828 1.560000e-59 241.0
6 TraesCS6A01G301800 chr4B 96.635 832 24 2 3513 4344 662389229 662390056 0.000000e+00 1378.0
7 TraesCS6A01G301800 chr4B 92.000 175 14 0 1 175 661188012 661187838 3.360000e-61 246.0
8 TraesCS6A01G301800 chr1B 94.132 835 45 2 3513 4344 639560160 639560993 0.000000e+00 1267.0
9 TraesCS6A01G301800 chr1B 92.571 175 13 0 1 175 161318873 161318699 7.210000e-63 252.0
10 TraesCS6A01G301800 chr1B 89.785 186 15 1 18 199 688724780 688724595 7.260000e-58 235.0
11 TraesCS6A01G301800 chrUn 93.750 832 20 8 3513 4344 77281240 77280441 0.000000e+00 1219.0
12 TraesCS6A01G301800 chr7A 98.311 296 3 1 3513 3806 26785032 26784737 6.440000e-143 518.0
13 TraesCS6A01G301800 chr4D 96.129 310 9 1 4035 4344 489876285 489875979 1.800000e-138 503.0
14 TraesCS6A01G301800 chr1D 94.570 221 12 0 1 221 282178365 282178145 4.160000e-90 342.0
15 TraesCS6A01G301800 chr3A 93.488 215 12 2 1 215 732619680 732619892 7.010000e-83 318.0
16 TraesCS6A01G301800 chr7B 91.089 202 14 1 2 199 740018624 740018423 1.990000e-68 270.0
17 TraesCS6A01G301800 chr7B 85.185 108 16 0 2277 2384 97973878 97973771 1.280000e-20 111.0
18 TraesCS6A01G301800 chr5B 87.437 199 25 0 2958 3156 348448560 348448362 3.380000e-56 230.0
19 TraesCS6A01G301800 chr5B 86.022 93 11 2 1655 1747 348449619 348449529 9.940000e-17 99.0
20 TraesCS6A01G301800 chr5B 93.478 46 3 0 1905 1950 348449417 348449372 7.800000e-08 69.4
21 TraesCS6A01G301800 chr3D 96.350 137 5 0 1 137 520158254 520158390 4.370000e-55 226.0
22 TraesCS6A01G301800 chr5D 86.935 199 26 0 2958 3156 303759417 303759219 1.570000e-54 224.0
23 TraesCS6A01G301800 chr5D 91.667 48 3 1 1905 1952 303760269 303760223 1.010000e-06 65.8
24 TraesCS6A01G301800 chr5A 86.432 199 27 0 2958 3156 394181648 394181450 7.310000e-53 219.0
25 TraesCS6A01G301800 chr5A 91.667 48 3 1 1905 1952 394182517 394182471 1.010000e-06 65.8
26 TraesCS6A01G301800 chr2B 85.417 96 14 0 1441 1536 162008105 162008200 2.760000e-17 100.0
27 TraesCS6A01G301800 chr2B 83.495 103 17 0 1434 1536 162448382 162448280 3.580000e-16 97.1
28 TraesCS6A01G301800 chr2B 84.000 100 13 3 1442 1539 161722798 161722896 4.630000e-15 93.5
29 TraesCS6A01G301800 chr4A 93.750 64 4 0 1 64 542066007 542066070 3.580000e-16 97.1
30 TraesCS6A01G301800 chr2D 83.654 104 15 2 1434 1536 112099718 112099820 3.580000e-16 97.1
31 TraesCS6A01G301800 chr2D 92.188 64 5 0 1434 1497 111589052 111589115 1.660000e-14 91.6
32 TraesCS6A01G301800 chr2A 83.654 104 15 2 1434 1536 112745205 112745307 3.580000e-16 97.1
33 TraesCS6A01G301800 chr2A 83.654 104 15 2 1434 1536 113311576 113311474 3.580000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G301800 chr6A 535151295 535155638 4343 True 8022.0 8022 100.000 1 4344 1 chr6A.!!$R1 4343
1 TraesCS6A01G301800 chr6D 388537953 388541203 3250 True 2442.5 2521 93.863 215 3513 2 chr6D.!!$R1 3298
2 TraesCS6A01G301800 chr6B 581079574 581083098 3524 True 2274.5 2331 92.225 218 3494 2 chr6B.!!$R1 3276
3 TraesCS6A01G301800 chr4B 662389229 662390056 827 False 1378.0 1378 96.635 3513 4344 1 chr4B.!!$F1 831
4 TraesCS6A01G301800 chr1B 639560160 639560993 833 False 1267.0 1267 94.132 3513 4344 1 chr1B.!!$F1 831
5 TraesCS6A01G301800 chrUn 77280441 77281240 799 True 1219.0 1219 93.750 3513 4344 1 chrUn.!!$R1 831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.034186 GATGCATCCACCCACAAGGA 60.034 55.0 16.23 0.0 39.89 3.36 F
1760 1786 0.037790 GCGCCACTTCACTTCTCTCT 60.038 55.0 0.00 0.0 0.00 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 2279 1.077212 CATTGGAGCCTGGTCCCTG 60.077 63.158 12.54 6.76 35.49 4.45 R
3665 4079 0.249911 GAGGCGCTATCCACCGAAAT 60.250 55.000 7.64 0.00 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.904116 TCAATCAAATTTACATCGTCCGC 58.096 39.130 0.00 0.00 0.00 5.54
23 24 4.634004 TCAATCAAATTTACATCGTCCGCT 59.366 37.500 0.00 0.00 0.00 5.52
24 25 5.813157 TCAATCAAATTTACATCGTCCGCTA 59.187 36.000 0.00 0.00 0.00 4.26
25 26 6.314152 TCAATCAAATTTACATCGTCCGCTAA 59.686 34.615 0.00 0.00 0.00 3.09
26 27 6.671614 ATCAAATTTACATCGTCCGCTAAA 57.328 33.333 0.00 0.00 0.00 1.85
27 28 6.483385 TCAAATTTACATCGTCCGCTAAAA 57.517 33.333 0.00 0.00 0.00 1.52
28 29 6.900189 TCAAATTTACATCGTCCGCTAAAAA 58.100 32.000 0.00 0.00 0.00 1.94
29 30 6.797995 TCAAATTTACATCGTCCGCTAAAAAC 59.202 34.615 0.00 0.00 0.00 2.43
30 31 6.490566 AATTTACATCGTCCGCTAAAAACT 57.509 33.333 0.00 0.00 0.00 2.66
31 32 5.927954 TTTACATCGTCCGCTAAAAACTT 57.072 34.783 0.00 0.00 0.00 2.66
32 33 5.927954 TTACATCGTCCGCTAAAAACTTT 57.072 34.783 0.00 0.00 0.00 2.66
33 34 7.418840 TTTACATCGTCCGCTAAAAACTTTA 57.581 32.000 0.00 0.00 0.00 1.85
34 35 5.273523 ACATCGTCCGCTAAAAACTTTAC 57.726 39.130 0.00 0.00 0.00 2.01
35 36 4.751098 ACATCGTCCGCTAAAAACTTTACA 59.249 37.500 0.00 0.00 0.00 2.41
36 37 5.236911 ACATCGTCCGCTAAAAACTTTACAA 59.763 36.000 0.00 0.00 0.00 2.41
37 38 5.927954 TCGTCCGCTAAAAACTTTACAAT 57.072 34.783 0.00 0.00 0.00 2.71
38 39 7.118101 ACATCGTCCGCTAAAAACTTTACAATA 59.882 33.333 0.00 0.00 0.00 1.90
39 40 7.418840 TCGTCCGCTAAAAACTTTACAATAA 57.581 32.000 0.00 0.00 0.00 1.40
40 41 7.859598 TCGTCCGCTAAAAACTTTACAATAAA 58.140 30.769 0.00 0.00 0.00 1.40
41 42 8.341173 TCGTCCGCTAAAAACTTTACAATAAAA 58.659 29.630 0.00 0.00 0.00 1.52
42 43 9.120422 CGTCCGCTAAAAACTTTACAATAAAAT 57.880 29.630 0.00 0.00 0.00 1.82
50 51 9.705290 AAAAACTTTACAATAAAATCAGGCGAT 57.295 25.926 0.00 0.00 0.00 4.58
51 52 8.687824 AAACTTTACAATAAAATCAGGCGATG 57.312 30.769 0.00 0.00 30.13 3.84
52 53 6.265577 ACTTTACAATAAAATCAGGCGATGC 58.734 36.000 0.00 0.00 30.13 3.91
53 54 5.826601 TTACAATAAAATCAGGCGATGCA 57.173 34.783 0.00 0.00 30.13 3.96
54 55 4.924305 ACAATAAAATCAGGCGATGCAT 57.076 36.364 0.00 0.00 30.13 3.96
55 56 4.863491 ACAATAAAATCAGGCGATGCATC 58.137 39.130 17.10 17.10 30.13 3.91
56 57 4.232221 CAATAAAATCAGGCGATGCATCC 58.768 43.478 20.87 13.07 30.13 3.51
57 58 1.766494 AAAATCAGGCGATGCATCCA 58.234 45.000 20.87 0.53 30.13 3.41
58 59 1.027357 AAATCAGGCGATGCATCCAC 58.973 50.000 20.87 13.46 30.13 4.02
59 60 0.820891 AATCAGGCGATGCATCCACC 60.821 55.000 20.87 20.83 30.13 4.61
60 61 2.687418 ATCAGGCGATGCATCCACCC 62.687 60.000 23.41 19.05 0.00 4.61
61 62 3.410628 AGGCGATGCATCCACCCA 61.411 61.111 23.41 0.00 0.00 4.51
62 63 3.211963 GGCGATGCATCCACCCAC 61.212 66.667 20.87 3.86 0.00 4.61
63 64 2.438254 GCGATGCATCCACCCACA 60.438 61.111 20.87 0.00 0.00 4.17
64 65 2.045708 GCGATGCATCCACCCACAA 61.046 57.895 20.87 0.00 0.00 3.33
65 66 1.996786 GCGATGCATCCACCCACAAG 61.997 60.000 20.87 4.70 0.00 3.16
66 67 1.378882 CGATGCATCCACCCACAAGG 61.379 60.000 20.87 0.00 43.78 3.61
67 68 0.034186 GATGCATCCACCCACAAGGA 60.034 55.000 16.23 0.00 39.89 3.36
68 69 0.632835 ATGCATCCACCCACAAGGAT 59.367 50.000 0.00 0.00 45.30 3.24
71 72 3.119352 ATCCACCCACAAGGATGGA 57.881 52.632 0.00 0.00 44.72 3.41
72 73 0.921896 ATCCACCCACAAGGATGGAG 59.078 55.000 3.62 0.00 44.21 3.86
73 74 0.475632 TCCACCCACAAGGATGGAGT 60.476 55.000 0.00 0.00 43.02 3.85
74 75 0.322816 CCACCCACAAGGATGGAGTG 60.323 60.000 0.00 0.61 43.02 3.51
75 76 0.401738 CACCCACAAGGATGGAGTGT 59.598 55.000 0.00 0.00 43.02 3.55
76 77 1.149101 ACCCACAAGGATGGAGTGTT 58.851 50.000 0.00 0.00 43.02 3.32
77 78 1.499007 ACCCACAAGGATGGAGTGTTT 59.501 47.619 0.00 0.00 43.02 2.83
78 79 1.888512 CCCACAAGGATGGAGTGTTTG 59.111 52.381 0.00 0.00 43.02 2.93
79 80 1.270550 CCACAAGGATGGAGTGTTTGC 59.729 52.381 0.00 0.00 43.02 3.68
80 81 1.955778 CACAAGGATGGAGTGTTTGCA 59.044 47.619 0.00 0.00 0.00 4.08
81 82 1.956477 ACAAGGATGGAGTGTTTGCAC 59.044 47.619 0.00 0.00 45.57 4.57
82 83 1.270550 CAAGGATGGAGTGTTTGCACC 59.729 52.381 0.00 0.00 46.35 5.01
83 84 0.478072 AGGATGGAGTGTTTGCACCA 59.522 50.000 0.00 0.00 46.35 4.17
84 85 0.598065 GGATGGAGTGTTTGCACCAC 59.402 55.000 7.47 7.47 46.35 4.16
85 86 0.598065 GATGGAGTGTTTGCACCACC 59.402 55.000 11.15 4.52 46.35 4.61
86 87 0.827507 ATGGAGTGTTTGCACCACCC 60.828 55.000 11.15 11.94 46.35 4.61
87 88 2.200337 GGAGTGTTTGCACCACCCC 61.200 63.158 11.15 6.33 46.35 4.95
88 89 1.454847 GAGTGTTTGCACCACCCCA 60.455 57.895 11.15 0.00 46.35 4.96
89 90 1.455383 GAGTGTTTGCACCACCCCAG 61.455 60.000 11.15 0.00 46.35 4.45
90 91 2.837291 TGTTTGCACCACCCCAGC 60.837 61.111 0.00 0.00 0.00 4.85
91 92 2.521708 GTTTGCACCACCCCAGCT 60.522 61.111 0.00 0.00 0.00 4.24
92 93 1.228429 GTTTGCACCACCCCAGCTA 60.228 57.895 0.00 0.00 0.00 3.32
93 94 1.074775 TTTGCACCACCCCAGCTAG 59.925 57.895 0.00 0.00 0.00 3.42
94 95 3.567579 TTGCACCACCCCAGCTAGC 62.568 63.158 6.62 6.62 0.00 3.42
95 96 3.721706 GCACCACCCCAGCTAGCT 61.722 66.667 12.68 12.68 0.00 3.32
96 97 2.367202 GCACCACCCCAGCTAGCTA 61.367 63.158 18.86 0.00 0.00 3.32
97 98 1.826024 CACCACCCCAGCTAGCTAG 59.174 63.158 18.86 16.84 0.00 3.42
122 123 7.045725 CTCATGAGCAACACAATTTGATTTC 57.954 36.000 10.38 0.00 0.00 2.17
123 124 5.927689 TCATGAGCAACACAATTTGATTTCC 59.072 36.000 2.79 0.00 0.00 3.13
124 125 4.297510 TGAGCAACACAATTTGATTTCCG 58.702 39.130 2.79 0.00 0.00 4.30
125 126 4.037327 TGAGCAACACAATTTGATTTCCGA 59.963 37.500 2.79 0.00 0.00 4.55
126 127 5.138125 AGCAACACAATTTGATTTCCGAT 57.862 34.783 2.79 0.00 0.00 4.18
127 128 5.540911 AGCAACACAATTTGATTTCCGATT 58.459 33.333 2.79 0.00 0.00 3.34
128 129 5.406175 AGCAACACAATTTGATTTCCGATTG 59.594 36.000 2.79 0.00 36.00 2.67
129 130 5.610975 CAACACAATTTGATTTCCGATTGC 58.389 37.500 2.79 0.00 33.84 3.56
130 131 4.880759 ACACAATTTGATTTCCGATTGCA 58.119 34.783 2.79 0.00 33.84 4.08
131 132 5.295950 ACACAATTTGATTTCCGATTGCAA 58.704 33.333 0.00 0.00 33.84 4.08
132 133 5.933463 ACACAATTTGATTTCCGATTGCAAT 59.067 32.000 12.83 12.83 33.84 3.56
133 134 6.128499 ACACAATTTGATTTCCGATTGCAATG 60.128 34.615 18.59 9.14 33.84 2.82
134 135 5.163834 ACAATTTGATTTCCGATTGCAATGC 60.164 36.000 18.59 7.68 33.84 3.56
135 136 3.872511 TTGATTTCCGATTGCAATGCT 57.127 38.095 18.59 0.00 0.00 3.79
136 137 3.425577 TGATTTCCGATTGCAATGCTC 57.574 42.857 18.59 2.07 0.00 4.26
137 138 2.754002 TGATTTCCGATTGCAATGCTCA 59.246 40.909 18.59 7.28 0.00 4.26
138 139 3.193056 TGATTTCCGATTGCAATGCTCAA 59.807 39.130 18.59 4.97 0.00 3.02
139 140 3.872511 TTTCCGATTGCAATGCTCAAT 57.127 38.095 18.59 0.00 36.91 2.57
140 141 4.979943 TTTCCGATTGCAATGCTCAATA 57.020 36.364 18.59 0.00 34.59 1.90
141 142 4.556942 TTCCGATTGCAATGCTCAATAG 57.443 40.909 18.59 0.00 34.59 1.73
142 143 3.544684 TCCGATTGCAATGCTCAATAGT 58.455 40.909 18.59 0.00 34.59 2.12
143 144 3.561310 TCCGATTGCAATGCTCAATAGTC 59.439 43.478 18.59 0.00 34.59 2.59
144 145 3.313249 CCGATTGCAATGCTCAATAGTCA 59.687 43.478 18.59 0.00 34.59 3.41
145 146 4.277258 CGATTGCAATGCTCAATAGTCAC 58.723 43.478 18.59 0.00 34.59 3.67
146 147 4.034858 CGATTGCAATGCTCAATAGTCACT 59.965 41.667 18.59 0.00 34.59 3.41
147 148 5.448225 CGATTGCAATGCTCAATAGTCACTT 60.448 40.000 18.59 0.00 34.59 3.16
148 149 5.710513 TTGCAATGCTCAATAGTCACTTT 57.289 34.783 6.82 0.00 0.00 2.66
149 150 5.300969 TGCAATGCTCAATAGTCACTTTC 57.699 39.130 6.82 0.00 0.00 2.62
150 151 4.156556 TGCAATGCTCAATAGTCACTTTCC 59.843 41.667 6.82 0.00 0.00 3.13
151 152 4.439289 GCAATGCTCAATAGTCACTTTCCC 60.439 45.833 0.00 0.00 0.00 3.97
152 153 4.851639 ATGCTCAATAGTCACTTTCCCT 57.148 40.909 0.00 0.00 0.00 4.20
153 154 5.957771 ATGCTCAATAGTCACTTTCCCTA 57.042 39.130 0.00 0.00 0.00 3.53
154 155 5.957771 TGCTCAATAGTCACTTTCCCTAT 57.042 39.130 0.00 0.00 0.00 2.57
155 156 5.674525 TGCTCAATAGTCACTTTCCCTATG 58.325 41.667 0.00 0.00 0.00 2.23
156 157 5.189736 TGCTCAATAGTCACTTTCCCTATGT 59.810 40.000 0.00 0.00 0.00 2.29
157 158 5.755861 GCTCAATAGTCACTTTCCCTATGTC 59.244 44.000 0.00 0.00 0.00 3.06
158 159 6.235231 TCAATAGTCACTTTCCCTATGTCC 57.765 41.667 0.00 0.00 0.00 4.02
159 160 5.130477 TCAATAGTCACTTTCCCTATGTCCC 59.870 44.000 0.00 0.00 0.00 4.46
160 161 3.207044 AGTCACTTTCCCTATGTCCCT 57.793 47.619 0.00 0.00 0.00 4.20
161 162 2.840651 AGTCACTTTCCCTATGTCCCTG 59.159 50.000 0.00 0.00 0.00 4.45
162 163 2.838202 GTCACTTTCCCTATGTCCCTGA 59.162 50.000 0.00 0.00 0.00 3.86
163 164 3.107601 TCACTTTCCCTATGTCCCTGAG 58.892 50.000 0.00 0.00 0.00 3.35
164 165 2.840651 CACTTTCCCTATGTCCCTGAGT 59.159 50.000 0.00 0.00 0.00 3.41
165 166 4.030913 CACTTTCCCTATGTCCCTGAGTA 58.969 47.826 0.00 0.00 0.00 2.59
166 167 4.100189 CACTTTCCCTATGTCCCTGAGTAG 59.900 50.000 0.00 0.00 0.00 2.57
167 168 4.016479 ACTTTCCCTATGTCCCTGAGTAGA 60.016 45.833 0.00 0.00 0.00 2.59
168 169 4.620086 TTCCCTATGTCCCTGAGTAGAA 57.380 45.455 0.00 0.00 0.00 2.10
169 170 4.834406 TCCCTATGTCCCTGAGTAGAAT 57.166 45.455 0.00 0.00 0.00 2.40
170 171 5.157770 TCCCTATGTCCCTGAGTAGAATT 57.842 43.478 0.00 0.00 0.00 2.17
171 172 5.148502 TCCCTATGTCCCTGAGTAGAATTC 58.851 45.833 0.00 0.00 0.00 2.17
172 173 5.103043 TCCCTATGTCCCTGAGTAGAATTCT 60.103 44.000 13.56 13.56 0.00 2.40
173 174 6.104243 TCCCTATGTCCCTGAGTAGAATTCTA 59.896 42.308 11.24 11.24 0.00 2.10
174 175 6.209788 CCCTATGTCCCTGAGTAGAATTCTAC 59.790 46.154 30.31 30.31 46.93 2.59
189 190 9.445786 GTAGAATTCTACTCTCTTCGAAGATTG 57.554 37.037 30.20 22.66 44.06 2.67
190 191 8.287439 AGAATTCTACTCTCTTCGAAGATTGA 57.713 34.615 27.19 20.03 35.04 2.57
191 192 8.744652 AGAATTCTACTCTCTTCGAAGATTGAA 58.255 33.333 27.19 22.44 35.04 2.69
192 193 8.925161 AATTCTACTCTCTTCGAAGATTGAAG 57.075 34.615 27.19 21.66 43.31 3.02
193 194 5.885881 TCTACTCTCTTCGAAGATTGAAGC 58.114 41.667 27.19 0.00 42.02 3.86
194 195 4.799564 ACTCTCTTCGAAGATTGAAGCT 57.200 40.909 27.19 10.68 42.02 3.74
195 196 4.493547 ACTCTCTTCGAAGATTGAAGCTG 58.506 43.478 27.19 13.49 42.02 4.24
196 197 3.257393 TCTCTTCGAAGATTGAAGCTGC 58.743 45.455 27.19 0.00 42.02 5.25
197 198 2.350522 TCTTCGAAGATTGAAGCTGCC 58.649 47.619 23.74 0.00 42.02 4.85
198 199 2.079158 CTTCGAAGATTGAAGCTGCCA 58.921 47.619 20.74 0.00 36.72 4.92
199 200 2.408271 TCGAAGATTGAAGCTGCCAT 57.592 45.000 0.00 0.00 0.00 4.40
200 201 2.283298 TCGAAGATTGAAGCTGCCATC 58.717 47.619 0.00 0.00 0.00 3.51
201 202 2.011947 CGAAGATTGAAGCTGCCATCA 58.988 47.619 8.44 0.00 0.00 3.07
202 203 2.617308 CGAAGATTGAAGCTGCCATCAT 59.383 45.455 8.44 0.00 0.00 2.45
203 204 3.811497 CGAAGATTGAAGCTGCCATCATA 59.189 43.478 8.44 0.30 0.00 2.15
204 205 4.083961 CGAAGATTGAAGCTGCCATCATAG 60.084 45.833 8.44 0.00 0.00 2.23
205 206 3.147629 AGATTGAAGCTGCCATCATAGC 58.852 45.455 8.44 0.00 40.18 2.97
206 207 2.423446 TTGAAGCTGCCATCATAGCA 57.577 45.000 6.57 0.00 42.29 3.49
207 208 2.651382 TGAAGCTGCCATCATAGCAT 57.349 45.000 0.00 0.00 42.29 3.79
208 209 2.227194 TGAAGCTGCCATCATAGCATG 58.773 47.619 0.00 0.00 42.29 4.06
209 210 2.158726 TGAAGCTGCCATCATAGCATGA 60.159 45.455 0.00 2.05 44.55 3.07
210 211 1.893544 AGCTGCCATCATAGCATGAC 58.106 50.000 0.00 0.00 43.01 3.06
211 212 0.879765 GCTGCCATCATAGCATGACC 59.120 55.000 0.00 0.00 43.01 4.02
212 213 1.544982 GCTGCCATCATAGCATGACCT 60.545 52.381 0.00 0.00 43.01 3.85
213 214 2.860009 CTGCCATCATAGCATGACCTT 58.140 47.619 0.00 0.00 43.01 3.50
241 242 9.628500 ATTTAGGTAGAAACTTAATTAGCCCTG 57.372 33.333 0.00 0.00 28.44 4.45
287 288 4.816786 TTAAAAACTTGTAGCCGTGGAC 57.183 40.909 0.00 0.00 0.00 4.02
288 289 2.632987 AAAACTTGTAGCCGTGGACT 57.367 45.000 0.00 0.00 0.00 3.85
289 290 3.756933 AAAACTTGTAGCCGTGGACTA 57.243 42.857 0.00 0.00 0.00 2.59
378 379 8.712285 TTATATCCCTTCTTTTTACTGTGACG 57.288 34.615 0.00 0.00 0.00 4.35
385 386 1.210870 TTTTACTGTGACGCGTGTCC 58.789 50.000 25.28 16.78 44.86 4.02
478 480 5.174035 GTGTCGATGATACAACATGCTAGTC 59.826 44.000 0.00 0.00 0.00 2.59
484 486 5.185454 TGATACAACATGCTAGTCCAAAGG 58.815 41.667 0.00 0.00 0.00 3.11
496 498 2.237392 AGTCCAAAGGATTCTCCCTTCG 59.763 50.000 0.00 0.00 45.30 3.79
1279 1297 1.903877 CTGGATGGTCAGTCCCGCTT 61.904 60.000 0.00 0.00 34.76 4.68
1350 1368 4.394712 CTCCAGGCCGGTGGTGAC 62.395 72.222 10.68 0.00 38.88 3.67
1465 1483 4.116238 GGAAGAAGATCGTCATGTTCCTC 58.884 47.826 16.07 2.05 33.56 3.71
1531 1549 2.202557 TACATGAGCGACGCGGTG 60.203 61.111 15.18 16.10 37.83 4.94
1561 1579 1.529244 GGCCCTGCAACACTCAACT 60.529 57.895 0.00 0.00 0.00 3.16
1563 1581 0.312102 GCCCTGCAACACTCAACTTC 59.688 55.000 0.00 0.00 0.00 3.01
1569 1587 1.604278 GCAACACTCAACTTCTCCACC 59.396 52.381 0.00 0.00 0.00 4.61
1590 1608 2.282180 GTCCGGCCAGCCTGAAAA 60.282 61.111 2.24 0.00 31.28 2.29
1591 1609 2.282180 TCCGGCCAGCCTGAAAAC 60.282 61.111 2.24 0.00 0.00 2.43
1602 1624 4.502962 CAGCCTGAAAACAAAAACCAAGA 58.497 39.130 0.00 0.00 0.00 3.02
1650 1676 2.585247 GCCTCGTGGTGGCGTATC 60.585 66.667 5.26 0.00 41.03 2.24
1755 1781 3.423154 CCCGCGCCACTTCACTTC 61.423 66.667 0.00 0.00 0.00 3.01
1756 1782 2.357517 CCGCGCCACTTCACTTCT 60.358 61.111 0.00 0.00 0.00 2.85
1757 1783 2.383527 CCGCGCCACTTCACTTCTC 61.384 63.158 0.00 0.00 0.00 2.87
1758 1784 1.373497 CGCGCCACTTCACTTCTCT 60.373 57.895 0.00 0.00 0.00 3.10
1759 1785 1.347817 CGCGCCACTTCACTTCTCTC 61.348 60.000 0.00 0.00 0.00 3.20
1760 1786 0.037790 GCGCCACTTCACTTCTCTCT 60.038 55.000 0.00 0.00 0.00 3.10
1761 1787 1.989430 CGCCACTTCACTTCTCTCTC 58.011 55.000 0.00 0.00 0.00 3.20
1762 1788 1.543802 CGCCACTTCACTTCTCTCTCT 59.456 52.381 0.00 0.00 0.00 3.10
1763 1789 2.415357 CGCCACTTCACTTCTCTCTCTC 60.415 54.545 0.00 0.00 0.00 3.20
1764 1790 2.825532 GCCACTTCACTTCTCTCTCTCT 59.174 50.000 0.00 0.00 0.00 3.10
1765 1791 3.119495 GCCACTTCACTTCTCTCTCTCTC 60.119 52.174 0.00 0.00 0.00 3.20
1766 1792 4.335416 CCACTTCACTTCTCTCTCTCTCT 58.665 47.826 0.00 0.00 0.00 3.10
1767 1793 4.396166 CCACTTCACTTCTCTCTCTCTCTC 59.604 50.000 0.00 0.00 0.00 3.20
1768 1794 5.248640 CACTTCACTTCTCTCTCTCTCTCT 58.751 45.833 0.00 0.00 0.00 3.10
1769 1795 5.352569 CACTTCACTTCTCTCTCTCTCTCTC 59.647 48.000 0.00 0.00 0.00 3.20
1770 1796 5.249393 ACTTCACTTCTCTCTCTCTCTCTCT 59.751 44.000 0.00 0.00 0.00 3.10
1771 1797 5.344743 TCACTTCTCTCTCTCTCTCTCTC 57.655 47.826 0.00 0.00 0.00 3.20
1772 1798 5.026121 TCACTTCTCTCTCTCTCTCTCTCT 58.974 45.833 0.00 0.00 0.00 3.10
1773 1799 5.127845 TCACTTCTCTCTCTCTCTCTCTCTC 59.872 48.000 0.00 0.00 0.00 3.20
1774 1800 5.128499 CACTTCTCTCTCTCTCTCTCTCTCT 59.872 48.000 0.00 0.00 0.00 3.10
1775 1801 5.362430 ACTTCTCTCTCTCTCTCTCTCTCTC 59.638 48.000 0.00 0.00 0.00 3.20
1776 1802 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1777 1803 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1778 1804 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1779 1805 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1780 1806 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1781 1807 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1782 1808 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1783 1809 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1784 1810 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1785 1811 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1786 1812 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1787 1813 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1788 1814 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1789 1815 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1790 1816 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1791 1817 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1792 1818 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1793 1819 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1794 1820 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1795 1821 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1796 1822 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1797 1823 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1798 1824 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1799 1825 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1800 1826 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1801 1827 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1985 2324 1.419387 CATTCCCCTCTCCATCTCCAC 59.581 57.143 0.00 0.00 0.00 4.02
1992 2338 2.158842 CCTCTCCATCTCCACAACATCC 60.159 54.545 0.00 0.00 0.00 3.51
1998 2344 3.452264 CCATCTCCACAACATCCACTCTA 59.548 47.826 0.00 0.00 0.00 2.43
2028 2385 8.589701 ACGATCCTTAATTAACCCTTTTGATT 57.410 30.769 0.00 0.00 0.00 2.57
2029 2386 9.689501 ACGATCCTTAATTAACCCTTTTGATTA 57.310 29.630 0.00 0.00 0.00 1.75
2040 2397 6.196079 ACCCTTTTGATTAAGAAATCTCGC 57.804 37.500 0.35 0.00 41.83 5.03
2041 2398 5.946377 ACCCTTTTGATTAAGAAATCTCGCT 59.054 36.000 0.35 0.00 41.83 4.93
2042 2399 6.127897 ACCCTTTTGATTAAGAAATCTCGCTG 60.128 38.462 0.35 0.00 41.83 5.18
2043 2400 6.094048 CCCTTTTGATTAAGAAATCTCGCTGA 59.906 38.462 0.35 0.00 41.83 4.26
2044 2401 6.963805 CCTTTTGATTAAGAAATCTCGCTGAC 59.036 38.462 0.35 0.00 41.83 3.51
2082 2452 1.954362 ATCTGCAGCCCGAGTCTGTC 61.954 60.000 9.47 0.00 34.21 3.51
2139 2509 5.235305 TCGACGAGGTACTTAATTACACC 57.765 43.478 5.46 3.00 41.55 4.16
2144 2514 5.172934 CGAGGTACTTAATTACACCAGCAA 58.827 41.667 10.99 0.00 41.55 3.91
2154 2524 1.102978 ACACCAGCAACCACTTGAAC 58.897 50.000 0.00 0.00 0.00 3.18
2189 2559 2.777832 ATGAGGAGAAGAACACCTGC 57.222 50.000 0.00 0.00 39.58 4.85
2196 2566 1.177401 GAAGAACACCTGCCCATTCC 58.823 55.000 0.00 0.00 0.00 3.01
2207 2577 3.406764 CTGCCCATTCCTGCTTATCTAC 58.593 50.000 0.00 0.00 0.00 2.59
2230 2600 0.800631 GCCGGTGGTGTTTAAGTAGC 59.199 55.000 1.90 0.00 0.00 3.58
2431 2801 1.950909 CCAACCACTTCGCCACTTAAA 59.049 47.619 0.00 0.00 0.00 1.52
2594 2987 1.852626 ACCCAAGGGAGGAAGGTGG 60.853 63.158 13.15 0.00 38.96 4.61
2601 2994 3.519370 AGGGAGGAAGGTGGGTTATTA 57.481 47.619 0.00 0.00 0.00 0.98
2604 2997 4.415846 AGGGAGGAAGGTGGGTTATTATTC 59.584 45.833 0.00 0.00 0.00 1.75
2614 3007 5.128663 GGTGGGTTATTATTCAATGCCTTGT 59.871 40.000 1.49 0.00 33.87 3.16
2667 3060 1.344763 AGTTGACCTTTCCCTCGTGAG 59.655 52.381 0.00 0.00 0.00 3.51
2764 3162 2.394563 GGCGCTGGAGTTCTTGCTC 61.395 63.158 7.64 0.00 34.89 4.26
2837 3235 1.721389 CTTCCATTCGTGTCAGTGTCG 59.279 52.381 0.00 0.00 0.00 4.35
2901 3299 2.519377 TCACACCACTGTCGTTAAGG 57.481 50.000 0.00 0.00 0.00 2.69
2907 3305 4.062293 CACCACTGTCGTTAAGGAAATGA 58.938 43.478 0.00 0.00 0.00 2.57
2908 3306 4.513692 CACCACTGTCGTTAAGGAAATGAA 59.486 41.667 0.00 0.00 34.88 2.57
2909 3307 5.008217 CACCACTGTCGTTAAGGAAATGAAA 59.992 40.000 0.00 0.00 34.88 2.69
2940 3338 1.969589 TGCGCTGACGGACACTCTA 60.970 57.895 9.73 0.00 40.57 2.43
3167 3565 4.493747 GGAAGCGGAGGTCGTCGG 62.494 72.222 0.00 0.00 41.72 4.79
3300 3714 4.612412 TCCCGTCGTGCCAACACC 62.612 66.667 0.00 0.00 44.40 4.16
3488 3902 4.994471 TGTGTGCTGGGAGCTGCG 62.994 66.667 0.00 0.00 42.97 5.18
3510 3924 1.929169 CAGCATATGACACAGTGACCG 59.071 52.381 7.81 0.00 0.00 4.79
3554 3968 1.953686 GGAGGCATTTTATTAGCGGCA 59.046 47.619 1.45 0.00 0.00 5.69
3634 4048 0.169672 CTCACATGCTTTGAAGGCGG 59.830 55.000 0.00 0.00 0.00 6.13
3665 4079 1.675310 CCTCCGATTGTTGCTGGCA 60.675 57.895 0.00 0.00 0.00 4.92
3668 4082 1.203052 CTCCGATTGTTGCTGGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
4040 4457 4.787280 AGGCACCGGAGAGGAGGG 62.787 72.222 9.46 0.00 45.00 4.30
4098 4515 2.393768 CCTCGCACGCATCAGCTTT 61.394 57.895 0.00 0.00 39.10 3.51
4099 4516 1.225936 CTCGCACGCATCAGCTTTG 60.226 57.895 0.00 0.00 39.10 2.77
4129 4546 2.805353 CAGACTCGCCCACGTTCG 60.805 66.667 0.00 0.00 41.18 3.95
4296 4713 5.738619 TGACTATTGTTGGAGAAGCACTA 57.261 39.130 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.634004 AGCGGACGATGTAAATTTGATTGA 59.366 37.500 0.00 0.00 0.00 2.57
1 2 4.908736 AGCGGACGATGTAAATTTGATTG 58.091 39.130 0.00 0.00 0.00 2.67
2 3 6.671614 TTAGCGGACGATGTAAATTTGATT 57.328 33.333 0.00 0.00 0.00 2.57
3 4 6.671614 TTTAGCGGACGATGTAAATTTGAT 57.328 33.333 0.00 0.00 0.00 2.57
4 5 6.483385 TTTTAGCGGACGATGTAAATTTGA 57.517 33.333 0.00 0.00 0.00 2.69
5 6 6.799925 AGTTTTTAGCGGACGATGTAAATTTG 59.200 34.615 0.00 0.00 0.00 2.32
6 7 6.905578 AGTTTTTAGCGGACGATGTAAATTT 58.094 32.000 0.00 0.00 0.00 1.82
7 8 6.490566 AGTTTTTAGCGGACGATGTAAATT 57.509 33.333 0.00 0.00 0.00 1.82
8 9 6.490566 AAGTTTTTAGCGGACGATGTAAAT 57.509 33.333 0.00 0.00 0.00 1.40
9 10 5.927954 AAGTTTTTAGCGGACGATGTAAA 57.072 34.783 0.00 0.00 0.00 2.01
10 11 5.927954 AAAGTTTTTAGCGGACGATGTAA 57.072 34.783 0.00 0.00 0.00 2.41
11 12 5.925397 TGTAAAGTTTTTAGCGGACGATGTA 59.075 36.000 0.00 0.00 0.00 2.29
12 13 4.751098 TGTAAAGTTTTTAGCGGACGATGT 59.249 37.500 0.00 0.00 0.00 3.06
13 14 5.272167 TGTAAAGTTTTTAGCGGACGATG 57.728 39.130 0.00 0.00 0.00 3.84
14 15 5.927954 TTGTAAAGTTTTTAGCGGACGAT 57.072 34.783 0.00 0.00 0.00 3.73
15 16 5.927954 ATTGTAAAGTTTTTAGCGGACGA 57.072 34.783 0.00 0.00 0.00 4.20
16 17 8.491605 TTTTATTGTAAAGTTTTTAGCGGACG 57.508 30.769 0.00 0.00 0.00 4.79
24 25 9.705290 ATCGCCTGATTTTATTGTAAAGTTTTT 57.295 25.926 0.00 0.00 0.00 1.94
25 26 9.139174 CATCGCCTGATTTTATTGTAAAGTTTT 57.861 29.630 0.00 0.00 30.49 2.43
26 27 7.275560 GCATCGCCTGATTTTATTGTAAAGTTT 59.724 33.333 0.00 0.00 30.49 2.66
27 28 6.751888 GCATCGCCTGATTTTATTGTAAAGTT 59.248 34.615 0.00 0.00 30.49 2.66
28 29 6.127758 TGCATCGCCTGATTTTATTGTAAAGT 60.128 34.615 0.00 0.00 30.49 2.66
29 30 6.264832 TGCATCGCCTGATTTTATTGTAAAG 58.735 36.000 0.00 0.00 30.49 1.85
30 31 6.201226 TGCATCGCCTGATTTTATTGTAAA 57.799 33.333 0.00 0.00 30.49 2.01
31 32 5.826601 TGCATCGCCTGATTTTATTGTAA 57.173 34.783 0.00 0.00 30.49 2.41
32 33 5.048782 GGATGCATCGCCTGATTTTATTGTA 60.049 40.000 20.15 0.00 30.49 2.41
33 34 4.261741 GGATGCATCGCCTGATTTTATTGT 60.262 41.667 20.15 0.00 30.49 2.71
34 35 4.232221 GGATGCATCGCCTGATTTTATTG 58.768 43.478 20.15 0.00 30.49 1.90
35 36 3.890756 TGGATGCATCGCCTGATTTTATT 59.109 39.130 20.15 0.00 30.49 1.40
36 37 3.254166 GTGGATGCATCGCCTGATTTTAT 59.746 43.478 20.15 0.00 30.49 1.40
37 38 2.618241 GTGGATGCATCGCCTGATTTTA 59.382 45.455 20.15 0.00 30.49 1.52
38 39 1.406539 GTGGATGCATCGCCTGATTTT 59.593 47.619 20.15 0.00 30.49 1.82
39 40 1.027357 GTGGATGCATCGCCTGATTT 58.973 50.000 20.15 0.00 30.49 2.17
40 41 0.820891 GGTGGATGCATCGCCTGATT 60.821 55.000 23.62 0.00 30.49 2.57
41 42 1.228063 GGTGGATGCATCGCCTGAT 60.228 57.895 23.62 0.00 34.28 2.90
42 43 2.190313 GGTGGATGCATCGCCTGA 59.810 61.111 23.62 4.77 0.00 3.86
43 44 2.903855 GGGTGGATGCATCGCCTG 60.904 66.667 27.22 0.00 0.00 4.85
44 45 3.410628 TGGGTGGATGCATCGCCT 61.411 61.111 27.22 0.00 0.00 5.52
45 46 3.211963 GTGGGTGGATGCATCGCC 61.212 66.667 23.13 23.13 0.00 5.54
46 47 1.996786 CTTGTGGGTGGATGCATCGC 61.997 60.000 20.15 14.76 0.00 4.58
47 48 1.378882 CCTTGTGGGTGGATGCATCG 61.379 60.000 20.15 3.23 0.00 3.84
48 49 0.034186 TCCTTGTGGGTGGATGCATC 60.034 55.000 18.81 18.81 36.25 3.91
49 50 0.632835 ATCCTTGTGGGTGGATGCAT 59.367 50.000 0.00 0.00 41.13 3.96
50 51 2.086363 ATCCTTGTGGGTGGATGCA 58.914 52.632 0.00 0.00 41.13 3.96
56 57 0.401738 ACACTCCATCCTTGTGGGTG 59.598 55.000 10.80 10.80 44.00 4.61
57 58 1.149101 AACACTCCATCCTTGTGGGT 58.851 50.000 0.00 0.00 39.80 4.51
58 59 1.888512 CAAACACTCCATCCTTGTGGG 59.111 52.381 0.00 0.00 39.80 4.61
59 60 1.270550 GCAAACACTCCATCCTTGTGG 59.729 52.381 0.00 0.00 40.76 4.17
60 61 1.955778 TGCAAACACTCCATCCTTGTG 59.044 47.619 0.00 0.00 37.67 3.33
61 62 1.956477 GTGCAAACACTCCATCCTTGT 59.044 47.619 0.00 0.00 43.85 3.16
62 63 1.270550 GGTGCAAACACTCCATCCTTG 59.729 52.381 0.00 0.00 46.57 3.61
63 64 1.133513 TGGTGCAAACACTCCATCCTT 60.134 47.619 0.00 0.00 46.57 3.36
64 65 0.478072 TGGTGCAAACACTCCATCCT 59.522 50.000 0.00 0.00 46.57 3.24
65 66 0.598065 GTGGTGCAAACACTCCATCC 59.402 55.000 13.83 0.00 46.57 3.51
66 67 0.598065 GGTGGTGCAAACACTCCATC 59.402 55.000 18.75 4.72 46.57 3.51
67 68 0.827507 GGGTGGTGCAAACACTCCAT 60.828 55.000 18.75 0.00 46.57 3.41
68 69 1.454847 GGGTGGTGCAAACACTCCA 60.455 57.895 18.75 5.18 46.57 3.86
69 70 3.443588 GGGTGGTGCAAACACTCC 58.556 61.111 18.75 14.92 46.57 3.85
70 71 1.454847 TGGGGTGGTGCAAACACTC 60.455 57.895 18.75 16.00 46.57 3.51
71 72 1.455587 CTGGGGTGGTGCAAACACT 60.456 57.895 18.75 0.00 46.57 3.55
72 73 3.128375 CTGGGGTGGTGCAAACAC 58.872 61.111 12.96 12.96 46.66 3.32
73 74 2.000825 TAGCTGGGGTGGTGCAAACA 62.001 55.000 0.00 0.00 0.00 2.83
74 75 1.228429 TAGCTGGGGTGGTGCAAAC 60.228 57.895 0.00 0.00 0.00 2.93
75 76 1.074775 CTAGCTGGGGTGGTGCAAA 59.925 57.895 0.00 0.00 0.00 3.68
76 77 2.756400 CTAGCTGGGGTGGTGCAA 59.244 61.111 0.00 0.00 0.00 4.08
77 78 4.033776 GCTAGCTGGGGTGGTGCA 62.034 66.667 7.70 0.00 0.00 4.57
78 79 2.317149 CTAGCTAGCTGGGGTGGTGC 62.317 65.000 27.68 0.00 0.00 5.01
79 80 1.826024 CTAGCTAGCTGGGGTGGTG 59.174 63.158 27.68 3.40 0.00 4.17
80 81 2.066999 GCTAGCTAGCTGGGGTGGT 61.067 63.158 33.71 0.22 45.62 4.16
81 82 2.825264 GCTAGCTAGCTGGGGTGG 59.175 66.667 33.71 10.63 45.62 4.61
98 99 6.090358 GGAAATCAAATTGTGTTGCTCATGAG 59.910 38.462 18.84 18.84 0.00 2.90
99 100 5.927689 GGAAATCAAATTGTGTTGCTCATGA 59.072 36.000 0.00 0.00 0.00 3.07
100 101 5.164031 CGGAAATCAAATTGTGTTGCTCATG 60.164 40.000 0.00 0.00 0.00 3.07
101 102 4.925054 CGGAAATCAAATTGTGTTGCTCAT 59.075 37.500 0.00 0.00 0.00 2.90
102 103 4.037327 TCGGAAATCAAATTGTGTTGCTCA 59.963 37.500 0.00 0.00 0.00 4.26
103 104 4.545610 TCGGAAATCAAATTGTGTTGCTC 58.454 39.130 0.00 0.00 0.00 4.26
104 105 4.582701 TCGGAAATCAAATTGTGTTGCT 57.417 36.364 0.00 0.00 0.00 3.91
105 106 5.610975 CAATCGGAAATCAAATTGTGTTGC 58.389 37.500 0.00 0.00 0.00 4.17
106 107 5.177142 TGCAATCGGAAATCAAATTGTGTTG 59.823 36.000 0.00 0.00 32.86 3.33
107 108 5.295950 TGCAATCGGAAATCAAATTGTGTT 58.704 33.333 0.00 0.00 32.86 3.32
108 109 4.880759 TGCAATCGGAAATCAAATTGTGT 58.119 34.783 0.00 0.00 32.86 3.72
109 110 5.842619 TTGCAATCGGAAATCAAATTGTG 57.157 34.783 0.00 0.00 32.86 3.33
110 111 5.163834 GCATTGCAATCGGAAATCAAATTGT 60.164 36.000 9.53 0.00 32.86 2.71
111 112 5.064198 AGCATTGCAATCGGAAATCAAATTG 59.936 36.000 9.53 0.00 33.31 2.32
112 113 5.180271 AGCATTGCAATCGGAAATCAAATT 58.820 33.333 9.53 0.00 0.00 1.82
113 114 4.761975 AGCATTGCAATCGGAAATCAAAT 58.238 34.783 9.53 0.00 0.00 2.32
114 115 4.175516 GAGCATTGCAATCGGAAATCAAA 58.824 39.130 9.53 0.00 0.00 2.69
115 116 3.193056 TGAGCATTGCAATCGGAAATCAA 59.807 39.130 9.53 0.00 0.00 2.57
116 117 2.754002 TGAGCATTGCAATCGGAAATCA 59.246 40.909 9.53 4.99 0.00 2.57
117 118 3.425577 TGAGCATTGCAATCGGAAATC 57.574 42.857 9.53 2.45 0.00 2.17
118 119 3.872511 TTGAGCATTGCAATCGGAAAT 57.127 38.095 9.53 0.00 0.00 2.17
119 120 3.872511 ATTGAGCATTGCAATCGGAAA 57.127 38.095 9.53 2.88 30.54 3.13
120 121 3.947196 ACTATTGAGCATTGCAATCGGAA 59.053 39.130 9.53 0.66 37.22 4.30
121 122 3.544684 ACTATTGAGCATTGCAATCGGA 58.455 40.909 9.53 0.00 37.22 4.55
122 123 3.313249 TGACTATTGAGCATTGCAATCGG 59.687 43.478 9.53 0.04 37.22 4.18
123 124 4.034858 AGTGACTATTGAGCATTGCAATCG 59.965 41.667 9.53 6.73 37.22 3.34
124 125 5.496133 AGTGACTATTGAGCATTGCAATC 57.504 39.130 9.53 4.91 37.22 2.67
125 126 5.909621 AAGTGACTATTGAGCATTGCAAT 57.090 34.783 11.91 5.99 39.20 3.56
126 127 5.335897 GGAAAGTGACTATTGAGCATTGCAA 60.336 40.000 11.91 0.00 0.00 4.08
127 128 4.156556 GGAAAGTGACTATTGAGCATTGCA 59.843 41.667 11.91 0.00 0.00 4.08
128 129 4.439289 GGGAAAGTGACTATTGAGCATTGC 60.439 45.833 0.00 0.00 0.00 3.56
129 130 4.946157 AGGGAAAGTGACTATTGAGCATTG 59.054 41.667 0.00 0.00 0.00 2.82
130 131 5.184892 AGGGAAAGTGACTATTGAGCATT 57.815 39.130 0.00 0.00 0.00 3.56
131 132 4.851639 AGGGAAAGTGACTATTGAGCAT 57.148 40.909 0.00 0.00 0.00 3.79
132 133 5.189736 ACATAGGGAAAGTGACTATTGAGCA 59.810 40.000 0.00 0.00 0.00 4.26
133 134 5.675538 ACATAGGGAAAGTGACTATTGAGC 58.324 41.667 0.00 0.00 0.00 4.26
134 135 6.284459 GGACATAGGGAAAGTGACTATTGAG 58.716 44.000 0.00 0.00 0.00 3.02
135 136 5.130477 GGGACATAGGGAAAGTGACTATTGA 59.870 44.000 0.00 0.00 0.00 2.57
136 137 5.131142 AGGGACATAGGGAAAGTGACTATTG 59.869 44.000 0.00 0.00 0.00 1.90
137 138 5.131142 CAGGGACATAGGGAAAGTGACTATT 59.869 44.000 0.00 0.00 0.00 1.73
138 139 4.656112 CAGGGACATAGGGAAAGTGACTAT 59.344 45.833 0.00 0.00 0.00 2.12
139 140 4.030913 CAGGGACATAGGGAAAGTGACTA 58.969 47.826 0.00 0.00 0.00 2.59
140 141 2.840651 CAGGGACATAGGGAAAGTGACT 59.159 50.000 0.00 0.00 0.00 3.41
141 142 2.838202 TCAGGGACATAGGGAAAGTGAC 59.162 50.000 0.00 0.00 0.00 3.67
142 143 3.107601 CTCAGGGACATAGGGAAAGTGA 58.892 50.000 0.00 0.00 0.00 3.41
143 144 2.840651 ACTCAGGGACATAGGGAAAGTG 59.159 50.000 0.00 0.00 0.00 3.16
144 145 3.207044 ACTCAGGGACATAGGGAAAGT 57.793 47.619 0.00 0.00 0.00 2.66
145 146 4.547671 TCTACTCAGGGACATAGGGAAAG 58.452 47.826 0.00 0.00 0.00 2.62
146 147 4.620086 TCTACTCAGGGACATAGGGAAA 57.380 45.455 0.00 0.00 0.00 3.13
147 148 4.620086 TTCTACTCAGGGACATAGGGAA 57.380 45.455 0.00 0.00 0.00 3.97
148 149 4.834406 ATTCTACTCAGGGACATAGGGA 57.166 45.455 0.00 0.00 0.00 4.20
149 150 5.151454 AGAATTCTACTCAGGGACATAGGG 58.849 45.833 6.06 0.00 0.00 3.53
150 151 7.222000 GTAGAATTCTACTCAGGGACATAGG 57.778 44.000 30.20 0.00 44.06 2.57
163 164 9.445786 CAATCTTCGAAGAGAGTAGAATTCTAC 57.554 37.037 30.31 30.31 42.42 2.59
164 165 9.397280 TCAATCTTCGAAGAGAGTAGAATTCTA 57.603 33.333 29.89 11.24 38.66 2.10
165 166 8.287439 TCAATCTTCGAAGAGAGTAGAATTCT 57.713 34.615 29.89 13.56 38.66 2.40
166 167 8.918961 TTCAATCTTCGAAGAGAGTAGAATTC 57.081 34.615 29.89 0.00 38.66 2.17
167 168 7.491048 GCTTCAATCTTCGAAGAGAGTAGAATT 59.509 37.037 29.89 15.63 42.05 2.17
168 169 6.978080 GCTTCAATCTTCGAAGAGAGTAGAAT 59.022 38.462 29.89 10.57 42.05 2.40
169 170 6.151985 AGCTTCAATCTTCGAAGAGAGTAGAA 59.848 38.462 29.89 23.82 42.05 2.10
170 171 5.650266 AGCTTCAATCTTCGAAGAGAGTAGA 59.350 40.000 29.89 19.53 42.05 2.59
171 172 5.743398 CAGCTTCAATCTTCGAAGAGAGTAG 59.257 44.000 29.89 24.95 42.05 2.57
172 173 5.645624 CAGCTTCAATCTTCGAAGAGAGTA 58.354 41.667 29.89 17.89 42.05 2.59
173 174 4.493547 CAGCTTCAATCTTCGAAGAGAGT 58.506 43.478 29.89 16.57 42.05 3.24
174 175 3.306703 GCAGCTTCAATCTTCGAAGAGAG 59.693 47.826 29.89 23.74 42.05 3.20
175 176 3.257393 GCAGCTTCAATCTTCGAAGAGA 58.743 45.455 29.89 20.70 42.05 3.10
176 177 2.351111 GGCAGCTTCAATCTTCGAAGAG 59.649 50.000 29.89 18.86 42.05 2.85
177 178 2.289631 TGGCAGCTTCAATCTTCGAAGA 60.290 45.455 28.85 28.85 42.05 2.87
178 179 2.079158 TGGCAGCTTCAATCTTCGAAG 58.921 47.619 19.35 19.35 42.31 3.79
179 180 2.183478 TGGCAGCTTCAATCTTCGAA 57.817 45.000 0.00 0.00 0.00 3.71
180 181 2.283298 GATGGCAGCTTCAATCTTCGA 58.717 47.619 0.00 0.00 0.00 3.71
181 182 2.011947 TGATGGCAGCTTCAATCTTCG 58.988 47.619 3.69 0.00 0.00 3.79
182 183 4.320348 GCTATGATGGCAGCTTCAATCTTC 60.320 45.833 3.69 0.00 34.86 2.87
183 184 3.568853 GCTATGATGGCAGCTTCAATCTT 59.431 43.478 3.69 0.00 34.86 2.40
184 185 3.147629 GCTATGATGGCAGCTTCAATCT 58.852 45.455 3.69 0.00 34.86 2.40
185 186 2.882761 TGCTATGATGGCAGCTTCAATC 59.117 45.455 3.69 0.00 38.63 2.67
186 187 2.940158 TGCTATGATGGCAGCTTCAAT 58.060 42.857 3.69 0.00 38.63 2.57
187 188 2.423446 TGCTATGATGGCAGCTTCAA 57.577 45.000 3.69 0.00 38.63 2.69
188 189 2.158726 TCATGCTATGATGGCAGCTTCA 60.159 45.455 9.80 0.00 43.15 3.02
189 190 2.225963 GTCATGCTATGATGGCAGCTTC 59.774 50.000 9.80 0.00 43.15 3.86
190 191 2.228059 GTCATGCTATGATGGCAGCTT 58.772 47.619 9.80 0.00 43.15 3.74
191 192 1.544982 GGTCATGCTATGATGGCAGCT 60.545 52.381 9.80 0.00 43.15 4.24
192 193 0.879765 GGTCATGCTATGATGGCAGC 59.120 55.000 9.80 0.00 43.15 5.25
193 194 2.563261 AGGTCATGCTATGATGGCAG 57.437 50.000 9.80 2.11 43.15 4.85
194 195 2.173143 TGAAGGTCATGCTATGATGGCA 59.827 45.455 5.80 5.80 42.04 4.92
195 196 2.854963 TGAAGGTCATGCTATGATGGC 58.145 47.619 0.00 0.00 42.04 4.40
196 197 6.150641 CCTAAATGAAGGTCATGCTATGATGG 59.849 42.308 2.80 0.00 42.04 3.51
197 198 7.142306 CCTAAATGAAGGTCATGCTATGATG 57.858 40.000 2.80 0.00 42.04 3.07
213 214 9.623000 GGGCTAATTAAGTTTCTACCTAAATGA 57.377 33.333 0.00 0.00 0.00 2.57
257 258 7.975058 ACGGCTACAAGTTTTTAAAAAGCTTAA 59.025 29.630 13.58 10.11 0.00 1.85
258 259 7.432838 CACGGCTACAAGTTTTTAAAAAGCTTA 59.567 33.333 13.58 6.14 0.00 3.09
261 262 5.051307 CCACGGCTACAAGTTTTTAAAAAGC 60.051 40.000 13.58 11.72 0.00 3.51
302 303 4.171103 GGGCCCGCTGTAACCGAT 62.171 66.667 5.69 0.00 0.00 4.18
378 379 1.467342 GTAGGTGGAATTTGGACACGC 59.533 52.381 0.00 0.00 36.02 5.34
385 386 3.191371 GCAGTGAAGGTAGGTGGAATTTG 59.809 47.826 0.00 0.00 0.00 2.32
513 515 2.237393 TGGCACCAAATTTGTGAAGC 57.763 45.000 16.73 13.36 0.00 3.86
598 600 2.008697 CGGCGGTTTTCGTGCTTTG 61.009 57.895 0.00 0.00 41.72 2.77
1279 1297 1.457643 CGTGGAGGCAGGAGGGATA 60.458 63.158 0.00 0.00 0.00 2.59
1350 1368 5.555966 AGAGAAGCCAAAGAAAGGTTAGAG 58.444 41.667 0.00 0.00 0.00 2.43
1465 1483 3.392595 GAGGGTGCCGTCGTAGTCG 62.393 68.421 0.00 0.00 39.05 4.18
1590 1608 8.177119 TCAGCAAATATAGTCTTGGTTTTTGT 57.823 30.769 0.00 0.00 31.14 2.83
1591 1609 9.294030 GATCAGCAAATATAGTCTTGGTTTTTG 57.706 33.333 0.00 0.00 31.14 2.44
1602 1624 5.773575 ACGACATCGATCAGCAAATATAGT 58.226 37.500 8.54 0.00 43.02 2.12
1645 1671 1.683385 TCCCTCATCTGCACAGATACG 59.317 52.381 12.62 7.01 45.78 3.06
1650 1676 1.153208 GCCTCCCTCATCTGCACAG 60.153 63.158 0.00 0.00 0.00 3.66
1754 1780 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1755 1781 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1756 1782 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1757 1783 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1758 1784 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1759 1785 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1760 1786 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1761 1787 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1762 1788 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1763 1789 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1764 1790 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1765 1791 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1766 1792 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1767 1793 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1768 1794 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1769 1795 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1770 1796 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1771 1797 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1772 1798 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1773 1799 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1774 1800 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1775 1801 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1776 1802 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1777 1803 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1778 1804 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1779 1805 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1780 1806 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1781 1807 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1782 1808 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1783 1809 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1784 1810 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1785 1811 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
1786 1812 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
1787 1813 4.501229 GCAGAGAGAGAGAGAGAGAGAGAG 60.501 54.167 0.00 0.00 0.00 3.20
1788 1814 3.386078 GCAGAGAGAGAGAGAGAGAGAGA 59.614 52.174 0.00 0.00 0.00 3.10
1789 1815 3.494048 GGCAGAGAGAGAGAGAGAGAGAG 60.494 56.522 0.00 0.00 0.00 3.20
1790 1816 2.435805 GGCAGAGAGAGAGAGAGAGAGA 59.564 54.545 0.00 0.00 0.00 3.10
1791 1817 2.171237 TGGCAGAGAGAGAGAGAGAGAG 59.829 54.545 0.00 0.00 0.00 3.20
1792 1818 2.195727 TGGCAGAGAGAGAGAGAGAGA 58.804 52.381 0.00 0.00 0.00 3.10
1793 1819 2.715749 TGGCAGAGAGAGAGAGAGAG 57.284 55.000 0.00 0.00 0.00 3.20
1794 1820 4.350520 TGATATGGCAGAGAGAGAGAGAGA 59.649 45.833 0.00 0.00 0.00 3.10
1795 1821 4.654915 TGATATGGCAGAGAGAGAGAGAG 58.345 47.826 0.00 0.00 0.00 3.20
1796 1822 4.720775 TGATATGGCAGAGAGAGAGAGA 57.279 45.455 0.00 0.00 0.00 3.10
1797 1823 4.828939 ACTTGATATGGCAGAGAGAGAGAG 59.171 45.833 0.00 0.00 0.00 3.20
1798 1824 4.583907 CACTTGATATGGCAGAGAGAGAGA 59.416 45.833 0.00 0.00 0.00 3.10
1799 1825 4.583907 TCACTTGATATGGCAGAGAGAGAG 59.416 45.833 0.00 0.00 0.00 3.20
1800 1826 4.340666 GTCACTTGATATGGCAGAGAGAGA 59.659 45.833 0.00 0.00 0.00 3.10
1801 1827 4.341806 AGTCACTTGATATGGCAGAGAGAG 59.658 45.833 0.00 0.00 0.00 3.20
1841 2180 4.095483 AGCAAAGCCAGAGTTTAATCATCG 59.905 41.667 0.00 0.00 0.00 3.84
1940 2279 1.077212 CATTGGAGCCTGGTCCCTG 60.077 63.158 12.54 6.76 35.49 4.45
1985 2324 4.547406 TCGTCGTATAGAGTGGATGTTG 57.453 45.455 0.00 0.00 0.00 3.33
1992 2338 9.327529 GTTAATTAAGGATCGTCGTATAGAGTG 57.672 37.037 0.00 0.00 0.00 3.51
1998 2344 6.661304 AGGGTTAATTAAGGATCGTCGTAT 57.339 37.500 0.00 0.00 0.00 3.06
2028 2385 7.197017 GTGAGATTAGTCAGCGAGATTTCTTA 58.803 38.462 0.00 0.00 0.00 2.10
2029 2386 6.039616 GTGAGATTAGTCAGCGAGATTTCTT 58.960 40.000 0.00 0.00 0.00 2.52
2030 2387 5.451242 GGTGAGATTAGTCAGCGAGATTTCT 60.451 44.000 0.00 0.00 35.38 2.52
2031 2388 4.742659 GGTGAGATTAGTCAGCGAGATTTC 59.257 45.833 0.00 0.00 35.38 2.17
2032 2389 4.688021 GGTGAGATTAGTCAGCGAGATTT 58.312 43.478 0.00 0.00 35.38 2.17
2033 2390 4.314740 GGTGAGATTAGTCAGCGAGATT 57.685 45.455 0.00 0.00 35.38 2.40
2039 2396 3.129871 GCATGAGGTGAGATTAGTCAGC 58.870 50.000 0.00 0.00 43.88 4.26
2040 2397 3.133542 TGGCATGAGGTGAGATTAGTCAG 59.866 47.826 0.00 0.00 0.00 3.51
2041 2398 3.106827 TGGCATGAGGTGAGATTAGTCA 58.893 45.455 0.00 0.00 0.00 3.41
2042 2399 3.827008 TGGCATGAGGTGAGATTAGTC 57.173 47.619 0.00 0.00 0.00 2.59
2043 2400 4.411540 AGATTGGCATGAGGTGAGATTAGT 59.588 41.667 0.00 0.00 0.00 2.24
2044 2401 4.755629 CAGATTGGCATGAGGTGAGATTAG 59.244 45.833 0.00 0.00 0.00 1.73
2139 2509 3.457610 AATTGGTTCAAGTGGTTGCTG 57.542 42.857 0.00 0.00 33.23 4.41
2144 2514 6.130569 TGTAAGGTAAATTGGTTCAAGTGGT 58.869 36.000 0.00 0.00 0.00 4.16
2154 2524 7.938140 TCTCCTCATTTGTAAGGTAAATTGG 57.062 36.000 0.00 0.00 34.12 3.16
2189 2559 4.323104 GCTAGGTAGATAAGCAGGAATGGG 60.323 50.000 0.00 0.00 36.26 4.00
2230 2600 2.290122 CTAGCCTCCTCGTGCACCAG 62.290 65.000 12.15 8.07 0.00 4.00
2408 2778 2.112297 TGGCGAAGTGGTTGGGTC 59.888 61.111 0.00 0.00 0.00 4.46
2431 2801 0.670162 GATGCGGCATGCCTGTTAAT 59.330 50.000 33.07 18.53 45.60 1.40
2594 2987 5.523552 GGCAACAAGGCATTGAATAATAACC 59.476 40.000 19.41 3.81 43.51 2.85
2601 2994 1.255882 TCGGCAACAAGGCATTGAAT 58.744 45.000 19.41 3.08 44.47 2.57
2604 2997 0.527113 TCATCGGCAACAAGGCATTG 59.473 50.000 10.01 10.01 44.47 2.82
2667 3060 9.701891 TGGAGGTTCCAATCTTGATCAAGATCC 62.702 44.444 38.41 33.34 46.38 3.36
2764 3162 1.260198 CGTGCGTACCTAGCGATTCG 61.260 60.000 0.62 0.62 37.44 3.34
2822 3220 1.002250 GTCGCGACACTGACACGAAT 61.002 55.000 33.09 0.00 35.20 3.34
2837 3235 2.170273 GCCGAAAACGACTGTCGC 59.830 61.111 28.27 12.19 45.12 5.19
2865 3263 3.325870 TGTGAAACGCAGGTGAATAGAG 58.674 45.455 0.00 0.00 42.39 2.43
2937 3335 0.917821 TCCTGGAGAGACGGGGTAGA 60.918 60.000 0.00 0.00 37.50 2.59
2940 3338 0.688087 GAATCCTGGAGAGACGGGGT 60.688 60.000 1.52 0.00 37.50 4.95
3218 3616 2.109126 GTCTTGGATCTGTGCCGCC 61.109 63.158 0.00 0.00 0.00 6.13
3219 3617 2.456119 CGTCTTGGATCTGTGCCGC 61.456 63.158 0.00 0.00 0.00 6.53
3221 3619 2.109126 GGCGTCTTGGATCTGTGCC 61.109 63.158 0.00 0.00 0.00 5.01
3333 3747 4.763793 CACCACAGAACCATCAGAGAAAAT 59.236 41.667 0.00 0.00 0.00 1.82
3488 3902 1.667724 GTCACTGTGTCATATGCTGCC 59.332 52.381 7.79 0.00 0.00 4.85
3494 3908 3.232213 GTGTCGGTCACTGTGTCATAT 57.768 47.619 7.79 0.00 43.13 1.78
3510 3924 2.985751 TGACGTACGTGTTGTAGTGTC 58.014 47.619 28.16 7.57 38.88 3.67
3634 4048 6.136541 ACAATCGGAGGCATTTTCTAAATC 57.863 37.500 0.00 0.00 0.00 2.17
3665 4079 0.249911 GAGGCGCTATCCACCGAAAT 60.250 55.000 7.64 0.00 0.00 2.17
3668 4082 3.224324 GGAGGCGCTATCCACCGA 61.224 66.667 22.24 0.00 36.79 4.69
4040 4457 2.123640 CCTCCTCCTCCTCCGTCC 60.124 72.222 0.00 0.00 0.00 4.79
4098 4515 0.842030 AGTCTGGCATGGGAAGGACA 60.842 55.000 0.00 0.00 0.00 4.02
4099 4516 0.107459 GAGTCTGGCATGGGAAGGAC 60.107 60.000 0.00 0.00 0.00 3.85
4129 4546 2.350772 CGTTGGATCAAGAACAGCAACC 60.351 50.000 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.