Multiple sequence alignment - TraesCS6A01G301500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G301500 chr6A 100.000 2921 0 0 1 2921 534950963 534948043 0.000000e+00 5395.0
1 TraesCS6A01G301500 chr6A 88.043 368 22 3 60 405 578884559 578884926 1.620000e-112 416.0
2 TraesCS6A01G301500 chr6A 86.179 369 30 2 54 401 607060657 607060289 2.120000e-101 379.0
3 TraesCS6A01G301500 chr6A 100.000 44 0 0 2570 2613 534948350 534948307 6.710000e-12 82.4
4 TraesCS6A01G301500 chr6A 100.000 44 0 0 2614 2657 534948394 534948351 6.710000e-12 82.4
5 TraesCS6A01G301500 chr6D 94.247 2225 61 33 396 2611 388323674 388321508 0.000000e+00 3338.0
6 TraesCS6A01G301500 chr6D 90.991 555 30 10 2065 2611 388269314 388268772 0.000000e+00 730.0
7 TraesCS6A01G301500 chr6D 89.961 259 26 0 2663 2921 388266096 388265838 4.660000e-88 335.0
8 TraesCS6A01G301500 chr6B 92.524 2207 83 26 411 2611 580242567 580240437 0.000000e+00 3086.0
9 TraesCS6A01G301500 chr6B 92.532 308 20 2 2614 2921 580240478 580240174 3.460000e-119 438.0
10 TraesCS6A01G301500 chr6B 85.564 381 29 5 63 419 8056606 8056228 2.750000e-100 375.0
11 TraesCS6A01G301500 chr2D 90.725 345 30 1 59 401 46820126 46819782 2.650000e-125 459.0
12 TraesCS6A01G301500 chr2D 84.358 358 24 7 64 401 568411108 568410763 3.630000e-84 322.0
13 TraesCS6A01G301500 chr2D 97.143 35 1 0 1 35 544849996 544849962 3.140000e-05 60.2
14 TraesCS6A01G301500 chr2B 89.796 343 30 3 64 401 62413577 62413235 4.470000e-118 435.0
15 TraesCS6A01G301500 chr1A 89.736 341 31 3 64 401 516727989 516727650 1.610000e-117 433.0
16 TraesCS6A01G301500 chr1A 86.301 365 25 4 64 403 419036411 419036047 9.880000e-100 374.0
17 TraesCS6A01G301500 chr1A 97.222 36 1 0 1 36 557970245 557970280 8.740000e-06 62.1
18 TraesCS6A01G301500 chr1A 97.143 35 1 0 1 35 241319977 241320011 3.140000e-05 60.2
19 TraesCS6A01G301500 chr2A 89.011 364 16 3 62 403 53613074 53613435 2.080000e-116 429.0
20 TraesCS6A01G301500 chr2A 87.931 348 37 3 61 403 692724464 692724811 3.510000e-109 405.0
21 TraesCS6A01G301500 chr2A 97.143 35 1 0 1 35 9126256 9126290 3.140000e-05 60.2
22 TraesCS6A01G301500 chr2A 100.000 32 0 0 1 32 112748113 112748082 3.140000e-05 60.2
23 TraesCS6A01G301500 chr4A 85.795 352 41 6 59 403 86582510 86582859 5.950000e-97 364.0
24 TraesCS6A01G301500 chr5D 75.000 268 44 17 1650 1916 302972807 302972562 5.150000e-18 102.0
25 TraesCS6A01G301500 chr5A 84.314 102 14 2 1012 1113 616653400 616653499 6.660000e-17 99.0
26 TraesCS6A01G301500 chr5A 74.157 267 46 17 1651 1916 394754445 394754689 4.010000e-14 89.8
27 TraesCS6A01G301500 chr4D 83.333 102 15 2 1012 1113 124286628 124286727 3.100000e-15 93.5
28 TraesCS6A01G301500 chr4D 100.000 32 0 0 1 32 119235927 119235896 3.140000e-05 60.2
29 TraesCS6A01G301500 chr4D 97.143 35 1 0 1 35 484354702 484354668 3.140000e-05 60.2
30 TraesCS6A01G301500 chr5B 92.188 64 5 0 1652 1715 347988450 347988387 1.110000e-14 91.6
31 TraesCS6A01G301500 chr3A 81.818 99 16 2 1015 1113 696400801 696400705 6.710000e-12 82.4
32 TraesCS6A01G301500 chr7D 97.222 36 1 0 1 36 451897647 451897612 8.740000e-06 62.1
33 TraesCS6A01G301500 chr7B 100.000 33 0 0 1 33 72595186 72595154 8.740000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G301500 chr6A 534948043 534950963 2920 True 1853.266667 5395 100.000 1 2921 3 chr6A.!!$R2 2920
1 TraesCS6A01G301500 chr6D 388321508 388323674 2166 True 3338.000000 3338 94.247 396 2611 1 chr6D.!!$R1 2215
2 TraesCS6A01G301500 chr6D 388265838 388269314 3476 True 532.500000 730 90.476 2065 2921 2 chr6D.!!$R2 856
3 TraesCS6A01G301500 chr6B 580240174 580242567 2393 True 1762.000000 3086 92.528 411 2921 2 chr6B.!!$R2 2510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
905 913 0.03563 ACTCATCACAGCCTCAAGCC 60.036 55.0 0.0 0.0 45.47 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1928 1942 0.104986 AGGATGGATGGACGGATGGA 60.105 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.409064 TGGGACAGAGGGAGTACAAA 57.591 50.000 0.00 0.00 0.00 2.83
35 36 2.257207 TGGGACAGAGGGAGTACAAAG 58.743 52.381 0.00 0.00 0.00 2.77
36 37 1.066071 GGGACAGAGGGAGTACAAAGC 60.066 57.143 0.00 0.00 0.00 3.51
37 38 1.903183 GGACAGAGGGAGTACAAAGCT 59.097 52.381 0.00 0.00 0.00 3.74
38 39 2.354203 GGACAGAGGGAGTACAAAGCTG 60.354 54.545 0.00 0.00 0.00 4.24
39 40 1.625818 ACAGAGGGAGTACAAAGCTGG 59.374 52.381 0.00 0.00 0.00 4.85
40 41 1.065854 CAGAGGGAGTACAAAGCTGGG 60.066 57.143 0.00 0.00 0.00 4.45
41 42 0.393132 GAGGGAGTACAAAGCTGGGC 60.393 60.000 0.00 0.00 0.00 5.36
42 43 0.842467 AGGGAGTACAAAGCTGGGCT 60.842 55.000 0.00 0.00 42.56 5.19
43 44 0.393132 GGGAGTACAAAGCTGGGCTC 60.393 60.000 0.00 0.00 38.25 4.70
44 45 0.393132 GGAGTACAAAGCTGGGCTCC 60.393 60.000 12.39 12.39 38.25 4.70
45 46 0.615850 GAGTACAAAGCTGGGCTCCT 59.384 55.000 0.00 0.00 38.25 3.69
46 47 0.615850 AGTACAAAGCTGGGCTCCTC 59.384 55.000 0.00 0.00 38.25 3.71
47 48 0.615850 GTACAAAGCTGGGCTCCTCT 59.384 55.000 0.00 0.00 38.25 3.69
48 49 0.615331 TACAAAGCTGGGCTCCTCTG 59.385 55.000 0.00 0.00 38.25 3.35
49 50 1.130054 ACAAAGCTGGGCTCCTCTGA 61.130 55.000 0.00 0.00 38.25 3.27
50 51 0.255318 CAAAGCTGGGCTCCTCTGAT 59.745 55.000 0.00 0.00 38.25 2.90
51 52 0.255318 AAAGCTGGGCTCCTCTGATG 59.745 55.000 0.00 0.00 38.25 3.07
52 53 0.619832 AAGCTGGGCTCCTCTGATGA 60.620 55.000 0.00 0.00 38.25 2.92
53 54 0.400237 AGCTGGGCTCCTCTGATGAT 60.400 55.000 0.00 0.00 30.62 2.45
54 55 0.250381 GCTGGGCTCCTCTGATGATG 60.250 60.000 0.00 0.00 0.00 3.07
55 56 0.250381 CTGGGCTCCTCTGATGATGC 60.250 60.000 0.00 0.00 0.00 3.91
56 57 0.693430 TGGGCTCCTCTGATGATGCT 60.693 55.000 0.00 0.00 0.00 3.79
57 58 0.250381 GGGCTCCTCTGATGATGCTG 60.250 60.000 0.00 0.00 0.00 4.41
58 59 0.885596 GGCTCCTCTGATGATGCTGC 60.886 60.000 0.00 0.00 0.00 5.25
59 60 0.179054 GCTCCTCTGATGATGCTGCA 60.179 55.000 4.13 4.13 0.00 4.41
60 61 1.584175 CTCCTCTGATGATGCTGCAC 58.416 55.000 3.57 0.00 0.00 4.57
61 62 1.139256 CTCCTCTGATGATGCTGCACT 59.861 52.381 3.57 0.00 0.00 4.40
62 63 1.558294 TCCTCTGATGATGCTGCACTT 59.442 47.619 3.57 0.00 0.00 3.16
63 64 2.767960 TCCTCTGATGATGCTGCACTTA 59.232 45.455 3.57 0.00 0.00 2.24
64 65 3.132160 CCTCTGATGATGCTGCACTTAG 58.868 50.000 3.57 0.00 0.00 2.18
65 66 3.181468 CCTCTGATGATGCTGCACTTAGA 60.181 47.826 3.57 3.91 0.00 2.10
66 67 4.052608 CTCTGATGATGCTGCACTTAGAG 58.947 47.826 3.57 9.88 0.00 2.43
67 68 2.544686 CTGATGATGCTGCACTTAGAGC 59.455 50.000 3.57 0.00 35.65 4.09
82 83 2.378028 GAGCATCTCCAACAGACGC 58.622 57.895 0.00 0.00 40.90 5.19
83 84 1.416813 GAGCATCTCCAACAGACGCG 61.417 60.000 3.53 3.53 45.48 6.01
84 85 3.084579 CATCTCCAACAGACGCGC 58.915 61.111 5.73 0.00 32.26 6.86
85 86 1.446792 CATCTCCAACAGACGCGCT 60.447 57.895 5.73 0.50 32.26 5.92
86 87 0.179137 CATCTCCAACAGACGCGCTA 60.179 55.000 5.73 0.00 32.26 4.26
87 88 0.747255 ATCTCCAACAGACGCGCTAT 59.253 50.000 5.73 0.00 32.26 2.97
88 89 1.385528 TCTCCAACAGACGCGCTATA 58.614 50.000 5.73 0.00 0.00 1.31
89 90 1.954382 TCTCCAACAGACGCGCTATAT 59.046 47.619 5.73 0.00 0.00 0.86
90 91 3.143728 TCTCCAACAGACGCGCTATATA 58.856 45.455 5.73 0.00 0.00 0.86
91 92 3.566742 TCTCCAACAGACGCGCTATATAA 59.433 43.478 5.73 0.00 0.00 0.98
92 93 3.897325 TCCAACAGACGCGCTATATAAG 58.103 45.455 5.73 0.00 0.00 1.73
93 94 8.973447 ATCTCCAACAGACGCGCTATATAAGC 62.973 46.154 5.73 1.00 40.17 3.09
109 110 2.997072 GCGACGCGCGGTATAAAA 59.003 55.556 35.22 0.00 44.55 1.52
110 111 1.344498 GCGACGCGCGGTATAAAAA 59.656 52.632 35.22 0.00 44.55 1.94
111 112 0.916320 GCGACGCGCGGTATAAAAAC 60.916 55.000 35.22 11.64 44.55 2.43
112 113 0.641783 CGACGCGCGGTATAAAAACT 59.358 50.000 35.22 8.59 36.03 2.66
113 114 1.588082 CGACGCGCGGTATAAAAACTG 60.588 52.381 35.22 0.99 36.03 3.16
114 115 1.391144 GACGCGCGGTATAAAAACTGT 59.609 47.619 35.22 7.72 0.00 3.55
115 116 1.799994 ACGCGCGGTATAAAAACTGTT 59.200 42.857 35.22 4.03 0.00 3.16
116 117 2.223845 ACGCGCGGTATAAAAACTGTTT 59.776 40.909 35.22 3.25 0.00 2.83
117 118 3.227948 CGCGCGGTATAAAAACTGTTTT 58.772 40.909 24.84 12.50 40.15 2.43
118 119 3.664947 CGCGCGGTATAAAAACTGTTTTT 59.335 39.130 28.02 28.02 44.43 1.94
119 120 4.845060 CGCGCGGTATAAAAACTGTTTTTA 59.155 37.500 29.85 29.85 45.84 1.52
120 121 5.001819 CGCGCGGTATAAAAACTGTTTTTAG 59.998 40.000 30.55 22.11 45.22 1.85
121 122 5.219896 GCGCGGTATAAAAACTGTTTTTAGC 60.220 40.000 30.55 26.88 45.22 3.09
122 123 5.001819 CGCGGTATAAAAACTGTTTTTAGCG 59.998 40.000 31.75 31.75 45.22 4.26
123 124 5.219896 GCGGTATAAAAACTGTTTTTAGCGC 60.220 40.000 35.62 35.62 45.22 5.92
124 125 5.001819 CGGTATAAAAACTGTTTTTAGCGCG 59.998 40.000 30.55 24.98 45.22 6.86
125 126 4.879014 ATAAAAACTGTTTTTAGCGCGC 57.121 36.364 30.55 26.66 45.22 6.86
126 127 1.117234 AAAACTGTTTTTAGCGCGCG 58.883 45.000 28.44 28.44 32.90 6.86
127 128 1.266124 AAACTGTTTTTAGCGCGCGC 61.266 50.000 45.10 45.10 42.33 6.86
139 140 3.799755 GCGCGCGGACCTGATTTT 61.800 61.111 33.06 0.00 0.00 1.82
140 141 2.399611 CGCGCGGACCTGATTTTC 59.600 61.111 24.84 0.00 0.00 2.29
141 142 2.387445 CGCGCGGACCTGATTTTCA 61.387 57.895 24.84 0.00 0.00 2.69
142 143 1.425428 GCGCGGACCTGATTTTCAG 59.575 57.895 8.83 0.00 43.91 3.02
143 144 1.298859 GCGCGGACCTGATTTTCAGT 61.299 55.000 8.83 0.00 42.80 3.41
144 145 0.721718 CGCGGACCTGATTTTCAGTC 59.278 55.000 0.00 2.34 42.80 3.51
145 146 1.673033 CGCGGACCTGATTTTCAGTCT 60.673 52.381 0.00 0.00 42.80 3.24
146 147 2.003301 GCGGACCTGATTTTCAGTCTC 58.997 52.381 4.00 0.00 42.80 3.36
147 148 2.622436 CGGACCTGATTTTCAGTCTCC 58.378 52.381 4.00 6.21 42.80 3.71
148 149 2.028112 CGGACCTGATTTTCAGTCTCCA 60.028 50.000 14.29 0.00 42.80 3.86
149 150 3.604582 GGACCTGATTTTCAGTCTCCAG 58.395 50.000 11.12 0.00 42.80 3.86
150 151 3.006247 GACCTGATTTTCAGTCTCCAGC 58.994 50.000 4.00 0.00 42.80 4.85
151 152 2.005451 CCTGATTTTCAGTCTCCAGCG 58.995 52.381 4.00 0.00 42.80 5.18
152 153 2.005451 CTGATTTTCAGTCTCCAGCGG 58.995 52.381 0.00 0.00 39.58 5.52
153 154 0.729690 GATTTTCAGTCTCCAGCGGC 59.270 55.000 0.00 0.00 0.00 6.53
154 155 0.678048 ATTTTCAGTCTCCAGCGGCC 60.678 55.000 0.00 0.00 0.00 6.13
155 156 3.589654 TTTCAGTCTCCAGCGGCCG 62.590 63.158 24.05 24.05 0.00 6.13
182 183 3.517974 CGCGCGCGCTATAACTAA 58.482 55.556 45.97 0.00 39.32 2.24
183 184 2.059575 CGCGCGCGCTATAACTAAT 58.940 52.632 45.97 0.00 39.32 1.73
184 185 0.246374 CGCGCGCGCTATAACTAATG 60.246 55.000 45.97 26.31 39.32 1.90
185 186 0.516524 GCGCGCGCTATAACTAATGC 60.517 55.000 44.38 16.88 38.26 3.56
186 187 0.781787 CGCGCGCTATAACTAATGCA 59.218 50.000 30.48 0.00 0.00 3.96
187 188 1.201704 CGCGCGCTATAACTAATGCAG 60.202 52.381 30.48 3.74 0.00 4.41
188 189 1.462541 GCGCGCTATAACTAATGCAGC 60.463 52.381 26.67 0.00 0.00 5.25
191 192 2.493997 GCTATAACTAATGCAGCGCG 57.506 50.000 0.00 0.00 0.00 6.86
192 193 1.462541 GCTATAACTAATGCAGCGCGC 60.463 52.381 26.66 26.66 42.89 6.86
193 194 0.781787 TATAACTAATGCAGCGCGCG 59.218 50.000 28.44 28.44 46.97 6.86
194 195 2.430080 ATAACTAATGCAGCGCGCGC 62.430 55.000 45.10 45.10 46.97 6.86
212 213 2.670401 GCAGCATATTTAGTGCGTCC 57.330 50.000 0.00 0.00 46.86 4.79
213 214 1.070577 GCAGCATATTTAGTGCGTCCG 60.071 52.381 0.00 0.00 46.86 4.79
214 215 1.526887 CAGCATATTTAGTGCGTCCGG 59.473 52.381 0.00 0.00 46.86 5.14
215 216 1.138266 AGCATATTTAGTGCGTCCGGT 59.862 47.619 0.00 0.00 46.86 5.28
216 217 1.525619 GCATATTTAGTGCGTCCGGTC 59.474 52.381 0.00 0.00 32.29 4.79
217 218 1.784856 CATATTTAGTGCGTCCGGTCG 59.215 52.381 17.02 17.02 0.00 4.79
233 234 4.828341 CGCGCGCGCTGTAAACTC 62.828 66.667 45.97 19.75 39.32 3.01
234 235 3.479269 GCGCGCGCTGTAAACTCT 61.479 61.111 44.38 0.00 38.26 3.24
235 236 2.391821 CGCGCGCTGTAAACTCTG 59.608 61.111 30.48 5.07 0.00 3.35
236 237 2.778679 GCGCGCTGTAAACTCTGG 59.221 61.111 26.67 0.00 0.00 3.86
237 238 2.740714 GCGCGCTGTAAACTCTGGG 61.741 63.158 26.67 0.00 0.00 4.45
238 239 2.740714 CGCGCTGTAAACTCTGGGC 61.741 63.158 5.56 0.00 40.04 5.36
239 240 1.376037 GCGCTGTAAACTCTGGGCT 60.376 57.895 0.00 0.00 40.19 5.19
240 241 1.639298 GCGCTGTAAACTCTGGGCTG 61.639 60.000 0.00 0.00 40.19 4.85
241 242 0.037326 CGCTGTAAACTCTGGGCTGA 60.037 55.000 0.00 0.00 0.00 4.26
242 243 1.406069 CGCTGTAAACTCTGGGCTGAT 60.406 52.381 0.00 0.00 0.00 2.90
243 244 2.012673 GCTGTAAACTCTGGGCTGATG 58.987 52.381 0.00 0.00 0.00 3.07
244 245 2.012673 CTGTAAACTCTGGGCTGATGC 58.987 52.381 0.00 0.00 38.76 3.91
245 246 1.350684 TGTAAACTCTGGGCTGATGCA 59.649 47.619 0.00 0.00 41.91 3.96
246 247 2.012673 GTAAACTCTGGGCTGATGCAG 58.987 52.381 0.00 0.00 41.91 4.41
247 248 0.694771 AAACTCTGGGCTGATGCAGA 59.305 50.000 0.00 0.00 41.91 4.26
248 249 0.917533 AACTCTGGGCTGATGCAGAT 59.082 50.000 0.00 0.00 41.91 2.90
249 250 0.180642 ACTCTGGGCTGATGCAGATG 59.819 55.000 0.00 0.00 41.91 2.90
250 251 0.535328 CTCTGGGCTGATGCAGATGG 60.535 60.000 0.00 0.00 41.91 3.51
251 252 1.528542 CTGGGCTGATGCAGATGGG 60.529 63.158 0.00 0.00 41.91 4.00
252 253 1.991339 CTGGGCTGATGCAGATGGGA 61.991 60.000 0.00 0.00 41.91 4.37
253 254 1.527844 GGGCTGATGCAGATGGGAC 60.528 63.158 0.00 0.00 41.91 4.46
254 255 1.527844 GGCTGATGCAGATGGGACC 60.528 63.158 0.00 0.00 41.91 4.46
255 256 1.890979 GCTGATGCAGATGGGACCG 60.891 63.158 0.00 0.00 39.41 4.79
256 257 1.890979 CTGATGCAGATGGGACCGC 60.891 63.158 0.00 0.00 32.44 5.68
257 258 2.321263 CTGATGCAGATGGGACCGCT 62.321 60.000 0.00 0.00 32.44 5.52
258 259 1.153086 GATGCAGATGGGACCGCTT 60.153 57.895 0.00 0.00 0.00 4.68
259 260 1.442526 GATGCAGATGGGACCGCTTG 61.443 60.000 0.00 0.00 0.00 4.01
260 261 1.913951 ATGCAGATGGGACCGCTTGA 61.914 55.000 0.00 0.00 0.00 3.02
261 262 1.153086 GCAGATGGGACCGCTTGAT 60.153 57.895 0.00 0.00 0.00 2.57
262 263 0.749454 GCAGATGGGACCGCTTGATT 60.749 55.000 0.00 0.00 0.00 2.57
263 264 1.019673 CAGATGGGACCGCTTGATTG 58.980 55.000 0.00 0.00 0.00 2.67
264 265 0.107017 AGATGGGACCGCTTGATTGG 60.107 55.000 0.00 0.00 0.00 3.16
265 266 1.076777 ATGGGACCGCTTGATTGGG 60.077 57.895 0.00 0.00 0.00 4.12
266 267 1.570857 ATGGGACCGCTTGATTGGGA 61.571 55.000 0.00 0.00 0.00 4.37
267 268 1.749258 GGGACCGCTTGATTGGGAC 60.749 63.158 0.00 0.00 0.00 4.46
268 269 1.749258 GGACCGCTTGATTGGGACC 60.749 63.158 0.00 0.00 0.00 4.46
269 270 2.046314 ACCGCTTGATTGGGACCG 60.046 61.111 0.00 0.00 0.00 4.79
270 271 3.508840 CCGCTTGATTGGGACCGC 61.509 66.667 0.00 0.00 0.00 5.68
271 272 2.436646 CGCTTGATTGGGACCGCT 60.437 61.111 0.00 0.00 0.00 5.52
272 273 2.753966 CGCTTGATTGGGACCGCTG 61.754 63.158 0.00 0.00 0.00 5.18
273 274 2.409870 GCTTGATTGGGACCGCTGG 61.410 63.158 0.00 0.00 0.00 4.85
274 275 1.299648 CTTGATTGGGACCGCTGGA 59.700 57.895 1.50 0.00 0.00 3.86
275 276 1.002624 TTGATTGGGACCGCTGGAC 60.003 57.895 1.50 0.00 0.00 4.02
276 277 1.488705 TTGATTGGGACCGCTGGACT 61.489 55.000 1.50 0.00 0.00 3.85
277 278 1.153349 GATTGGGACCGCTGGACTC 60.153 63.158 1.50 0.00 0.00 3.36
278 279 2.907897 GATTGGGACCGCTGGACTCG 62.908 65.000 1.50 0.00 0.00 4.18
287 288 4.662961 CTGGACTCGCGTGCACCA 62.663 66.667 20.49 20.49 36.50 4.17
288 289 3.939837 CTGGACTCGCGTGCACCAT 62.940 63.158 21.47 0.00 36.50 3.55
289 290 2.183300 GGACTCGCGTGCACCATA 59.817 61.111 12.15 0.00 0.00 2.74
290 291 1.227263 GGACTCGCGTGCACCATAT 60.227 57.895 12.15 0.00 0.00 1.78
291 292 0.810031 GGACTCGCGTGCACCATATT 60.810 55.000 12.15 0.00 0.00 1.28
292 293 1.006832 GACTCGCGTGCACCATATTT 58.993 50.000 12.15 0.00 0.00 1.40
293 294 1.396996 GACTCGCGTGCACCATATTTT 59.603 47.619 12.15 0.00 0.00 1.82
294 295 2.605818 GACTCGCGTGCACCATATTTTA 59.394 45.455 12.15 0.00 0.00 1.52
295 296 2.350498 ACTCGCGTGCACCATATTTTAC 59.650 45.455 12.15 0.00 0.00 2.01
296 297 2.347731 TCGCGTGCACCATATTTTACA 58.652 42.857 12.15 0.00 0.00 2.41
297 298 2.350192 TCGCGTGCACCATATTTTACAG 59.650 45.455 12.15 0.00 0.00 2.74
298 299 2.450160 GCGTGCACCATATTTTACAGC 58.550 47.619 12.15 0.00 0.00 4.40
299 300 2.704037 CGTGCACCATATTTTACAGCG 58.296 47.619 12.15 0.00 0.00 5.18
300 301 2.450160 GTGCACCATATTTTACAGCGC 58.550 47.619 5.22 0.00 0.00 5.92
301 302 2.097466 GTGCACCATATTTTACAGCGCT 59.903 45.455 2.64 2.64 0.00 5.92
302 303 2.752354 TGCACCATATTTTACAGCGCTT 59.248 40.909 7.50 1.63 0.00 4.68
303 304 3.108144 GCACCATATTTTACAGCGCTTG 58.892 45.455 7.50 6.20 0.00 4.01
304 305 3.427503 GCACCATATTTTACAGCGCTTGT 60.428 43.478 7.50 12.61 43.96 3.16
305 306 4.732784 CACCATATTTTACAGCGCTTGTT 58.267 39.130 7.50 0.00 41.29 2.83
306 307 4.558470 CACCATATTTTACAGCGCTTGTTG 59.442 41.667 7.50 0.00 41.29 3.33
307 308 4.104776 CCATATTTTACAGCGCTTGTTGG 58.895 43.478 7.50 9.21 41.29 3.77
308 309 4.142491 CCATATTTTACAGCGCTTGTTGGA 60.142 41.667 7.50 0.00 41.29 3.53
309 310 3.559238 ATTTTACAGCGCTTGTTGGAG 57.441 42.857 7.50 0.00 41.29 3.86
310 311 0.591170 TTTACAGCGCTTGTTGGAGC 59.409 50.000 7.50 0.00 41.29 4.70
311 312 0.533978 TTACAGCGCTTGTTGGAGCA 60.534 50.000 7.50 0.00 42.83 4.26
312 313 0.533978 TACAGCGCTTGTTGGAGCAA 60.534 50.000 7.50 0.00 42.83 3.91
313 314 1.359833 CAGCGCTTGTTGGAGCAAA 59.640 52.632 7.50 0.00 42.83 3.68
314 315 0.936297 CAGCGCTTGTTGGAGCAAAC 60.936 55.000 7.50 0.00 42.83 2.93
315 316 2.010817 GCGCTTGTTGGAGCAAACG 61.011 57.895 0.00 0.00 42.83 3.60
316 317 1.355210 CGCTTGTTGGAGCAAACGT 59.645 52.632 0.00 0.00 42.83 3.99
317 318 0.657368 CGCTTGTTGGAGCAAACGTC 60.657 55.000 0.00 0.00 42.83 4.34
318 319 0.663153 GCTTGTTGGAGCAAACGTCT 59.337 50.000 0.00 0.00 42.25 4.18
319 320 1.065551 GCTTGTTGGAGCAAACGTCTT 59.934 47.619 0.00 0.00 42.25 3.01
320 321 2.854805 GCTTGTTGGAGCAAACGTCTTC 60.855 50.000 0.00 0.00 42.25 2.87
321 322 2.325583 TGTTGGAGCAAACGTCTTCT 57.674 45.000 0.00 0.00 32.47 2.85
322 323 3.462483 TGTTGGAGCAAACGTCTTCTA 57.538 42.857 0.00 0.00 32.47 2.10
323 324 3.390135 TGTTGGAGCAAACGTCTTCTAG 58.610 45.455 0.00 0.00 32.47 2.43
324 325 2.080286 TGGAGCAAACGTCTTCTAGC 57.920 50.000 0.00 0.00 0.00 3.42
325 326 0.992802 GGAGCAAACGTCTTCTAGCG 59.007 55.000 0.00 0.00 0.00 4.26
326 327 0.367210 GAGCAAACGTCTTCTAGCGC 59.633 55.000 0.00 0.00 0.00 5.92
327 328 0.038159 AGCAAACGTCTTCTAGCGCT 60.038 50.000 17.26 17.26 0.00 5.92
328 329 0.367210 GCAAACGTCTTCTAGCGCTC 59.633 55.000 16.34 0.00 0.00 5.03
329 330 1.983972 CAAACGTCTTCTAGCGCTCT 58.016 50.000 16.34 0.00 0.00 4.09
330 331 2.731341 GCAAACGTCTTCTAGCGCTCTA 60.731 50.000 16.34 0.00 0.00 2.43
331 332 3.499048 CAAACGTCTTCTAGCGCTCTAA 58.501 45.455 16.34 8.88 0.00 2.10
332 333 3.844577 AACGTCTTCTAGCGCTCTAAA 57.155 42.857 16.34 5.98 0.00 1.85
333 334 3.844577 ACGTCTTCTAGCGCTCTAAAA 57.155 42.857 16.34 3.12 0.00 1.52
334 335 4.170292 ACGTCTTCTAGCGCTCTAAAAA 57.830 40.909 16.34 1.11 0.00 1.94
355 356 6.858104 AAAAACTACTTGCACGTTGTAAAC 57.142 33.333 10.56 0.00 45.31 2.01
356 357 4.541085 AACTACTTGCACGTTGTAAACC 57.459 40.909 10.56 0.00 46.28 3.27
357 358 2.874086 ACTACTTGCACGTTGTAAACCC 59.126 45.455 8.58 0.00 46.28 4.11
358 359 0.658897 ACTTGCACGTTGTAAACCCG 59.341 50.000 0.00 0.00 46.28 5.28
359 360 0.658897 CTTGCACGTTGTAAACCCGT 59.341 50.000 0.00 0.00 46.28 5.28
360 361 1.064357 CTTGCACGTTGTAAACCCGTT 59.936 47.619 0.00 0.00 46.28 4.44
361 362 1.093159 TGCACGTTGTAAACCCGTTT 58.907 45.000 0.00 0.00 46.28 3.60
362 363 1.471684 TGCACGTTGTAAACCCGTTTT 59.528 42.857 0.00 0.00 46.28 2.43
363 364 2.094854 TGCACGTTGTAAACCCGTTTTT 60.095 40.909 0.00 0.00 46.28 1.94
391 392 2.800736 GCATTAGGCGGCTGTTGG 59.199 61.111 23.55 9.47 0.00 3.77
392 393 1.748879 GCATTAGGCGGCTGTTGGA 60.749 57.895 23.55 0.00 0.00 3.53
393 394 1.718757 GCATTAGGCGGCTGTTGGAG 61.719 60.000 23.55 6.54 0.00 3.86
394 395 0.107703 CATTAGGCGGCTGTTGGAGA 60.108 55.000 23.55 0.00 0.00 3.71
398 399 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
430 431 4.273148 ACACATAAATAGATCCTCCGCC 57.727 45.455 0.00 0.00 0.00 6.13
502 503 2.302157 AGGTGGTGGAGTGTAGCTTTAC 59.698 50.000 0.00 0.00 0.00 2.01
620 621 2.290323 CCTCAATTAGGCCCCCGATTAG 60.290 54.545 0.00 0.00 38.97 1.73
649 650 3.806949 ATTTTAGCCCAGACCACTTCA 57.193 42.857 0.00 0.00 0.00 3.02
651 652 1.429930 TTAGCCCAGACCACTTCACA 58.570 50.000 0.00 0.00 0.00 3.58
654 655 1.064017 AGCCCAGACCACTTCACAAAA 60.064 47.619 0.00 0.00 0.00 2.44
655 656 1.338020 GCCCAGACCACTTCACAAAAG 59.662 52.381 0.00 0.00 0.00 2.27
656 657 1.338020 CCCAGACCACTTCACAAAAGC 59.662 52.381 0.00 0.00 0.00 3.51
658 659 2.426738 CCAGACCACTTCACAAAAGCAA 59.573 45.455 0.00 0.00 0.00 3.91
659 660 3.068590 CCAGACCACTTCACAAAAGCAAT 59.931 43.478 0.00 0.00 0.00 3.56
660 661 4.293415 CAGACCACTTCACAAAAGCAATC 58.707 43.478 0.00 0.00 0.00 2.67
661 662 3.003689 AGACCACTTCACAAAAGCAATCG 59.996 43.478 0.00 0.00 0.00 3.34
662 663 2.053627 CCACTTCACAAAAGCAATCGC 58.946 47.619 0.00 0.00 38.99 4.58
663 664 2.053627 CACTTCACAAAAGCAATCGCC 58.946 47.619 0.00 0.00 39.83 5.54
664 665 1.330306 CTTCACAAAAGCAATCGCCG 58.670 50.000 0.00 0.00 39.83 6.46
665 666 0.039617 TTCACAAAAGCAATCGCCGG 60.040 50.000 0.00 0.00 39.83 6.13
666 667 0.886938 TCACAAAAGCAATCGCCGGA 60.887 50.000 5.05 0.00 39.83 5.14
667 668 0.454957 CACAAAAGCAATCGCCGGAG 60.455 55.000 5.05 0.00 39.83 4.63
687 691 0.938168 GCCGGACGCTAATCTTACCG 60.938 60.000 5.05 0.00 40.03 4.02
728 732 1.717937 GACACGCCATTGCAGCTAG 59.282 57.895 0.00 0.00 37.32 3.42
729 733 2.315038 GACACGCCATTGCAGCTAGC 62.315 60.000 6.62 6.62 45.96 3.42
730 734 2.110967 CACGCCATTGCAGCTAGCT 61.111 57.895 12.68 12.68 45.94 3.32
731 735 0.811219 CACGCCATTGCAGCTAGCTA 60.811 55.000 18.86 1.73 45.94 3.32
758 762 1.609208 TGGCTCAAGCTTTTCCTGTC 58.391 50.000 0.00 0.00 41.70 3.51
759 763 1.133823 TGGCTCAAGCTTTTCCTGTCA 60.134 47.619 0.00 0.00 41.70 3.58
760 764 1.268079 GGCTCAAGCTTTTCCTGTCAC 59.732 52.381 0.00 0.00 41.70 3.67
761 765 1.949525 GCTCAAGCTTTTCCTGTCACA 59.050 47.619 0.00 0.00 38.21 3.58
762 766 2.555757 GCTCAAGCTTTTCCTGTCACAT 59.444 45.455 0.00 0.00 38.21 3.21
772 776 5.703978 TTTCCTGTCACATTACATGTTGG 57.296 39.130 2.30 0.00 42.70 3.77
810 814 4.215109 TGGGCTTAAGCACTCTTCTTTTT 58.785 39.130 28.98 0.00 46.62 1.94
813 817 5.473846 GGGCTTAAGCACTCTTCTTTTTACT 59.526 40.000 27.83 0.00 42.27 2.24
816 820 6.618805 GCTTAAGCACTCTTCTTTTTACTCCG 60.619 42.308 22.59 0.00 41.59 4.63
905 913 0.035630 ACTCATCACAGCCTCAAGCC 60.036 55.000 0.00 0.00 45.47 4.35
953 961 1.836604 GCCTAGGAGCAGAGGAGGG 60.837 68.421 14.75 0.00 34.46 4.30
954 962 1.934410 CCTAGGAGCAGAGGAGGGA 59.066 63.158 1.05 0.00 34.46 4.20
965 973 2.123640 GGAGGGAGAGGACGAGGG 60.124 72.222 0.00 0.00 0.00 4.30
982 990 1.001406 AGGGAGAAGAAGCTTCACACG 59.999 52.381 27.57 0.00 0.00 4.49
984 992 1.502231 GAGAAGAAGCTTCACACGCA 58.498 50.000 27.57 0.00 0.00 5.24
985 993 1.458827 GAGAAGAAGCTTCACACGCAG 59.541 52.381 27.57 0.00 0.00 5.18
986 994 0.110464 GAAGAAGCTTCACACGCAGC 60.110 55.000 27.57 4.50 36.16 5.25
1756 1770 4.824515 AGGACGAGGAGGAGGCCG 62.825 72.222 0.00 0.00 0.00 6.13
1764 1778 3.591835 GAGGAGGCCGAGAGCGAG 61.592 72.222 0.00 0.00 45.17 5.03
1921 1935 1.661341 CCGGAGCTGGAAGAAATGAG 58.339 55.000 0.00 0.00 34.07 2.90
1924 1938 1.406069 GGAGCTGGAAGAAATGAGCGA 60.406 52.381 0.00 0.00 36.52 4.93
1928 1942 2.544685 CTGGAAGAAATGAGCGACGAT 58.455 47.619 0.00 0.00 34.07 3.73
1929 1943 2.537625 CTGGAAGAAATGAGCGACGATC 59.462 50.000 6.08 6.08 34.07 3.69
1930 1944 1.861575 GGAAGAAATGAGCGACGATCC 59.138 52.381 11.07 0.00 0.00 3.36
1931 1945 2.540515 GAAGAAATGAGCGACGATCCA 58.459 47.619 11.07 0.00 0.00 3.41
1932 1946 2.898729 AGAAATGAGCGACGATCCAT 57.101 45.000 11.07 1.59 0.00 3.41
1933 1947 2.748605 AGAAATGAGCGACGATCCATC 58.251 47.619 11.07 6.24 0.00 3.51
1934 1948 1.795286 GAAATGAGCGACGATCCATCC 59.205 52.381 11.07 0.00 0.00 3.51
1935 1949 0.319040 AATGAGCGACGATCCATCCG 60.319 55.000 11.07 0.00 0.00 4.18
2003 2017 0.391130 TTTTGCGACCCGATCCTCTG 60.391 55.000 0.00 0.00 0.00 3.35
2004 2018 2.852495 TTTGCGACCCGATCCTCTGC 62.852 60.000 0.00 0.00 0.00 4.26
2005 2019 4.593864 GCGACCCGATCCTCTGCC 62.594 72.222 0.00 0.00 0.00 4.85
2038 2052 2.171840 TCTGAGAGCAGAGTTACCACC 58.828 52.381 0.00 0.00 45.88 4.61
2049 2063 0.453782 GTTACCACCACGATTTGCGC 60.454 55.000 0.00 0.00 46.04 6.09
2104 2118 1.373570 GATTGGTTCAGAGAAGGCCG 58.626 55.000 0.00 0.00 0.00 6.13
2156 2170 5.010112 TCTGCTCTGTAGATATTGCTGTACC 59.990 44.000 0.00 0.00 0.00 3.34
2186 2200 5.602561 GGATCCCTTGCCATATTTTTACCTT 59.397 40.000 0.00 0.00 0.00 3.50
2188 2202 7.454694 GGATCCCTTGCCATATTTTTACCTTAT 59.545 37.037 0.00 0.00 0.00 1.73
2222 2237 9.075678 ACTATGTACATGGTGAATAGTAGTACC 57.924 37.037 22.51 0.00 33.41 3.34
2223 2238 9.298250 CTATGTACATGGTGAATAGTAGTACCT 57.702 37.037 18.81 0.00 34.32 3.08
2227 2242 7.584122 ACATGGTGAATAGTAGTACCTGTAG 57.416 40.000 0.00 0.00 34.32 2.74
2228 2243 7.124052 ACATGGTGAATAGTAGTACCTGTAGT 58.876 38.462 0.00 0.00 34.32 2.73
2229 2244 8.277197 ACATGGTGAATAGTAGTACCTGTAGTA 58.723 37.037 0.00 0.00 34.32 1.82
2230 2245 9.298250 CATGGTGAATAGTAGTACCTGTAGTAT 57.702 37.037 0.00 0.00 34.32 2.12
2231 2246 8.687292 TGGTGAATAGTAGTACCTGTAGTATG 57.313 38.462 0.00 0.00 34.32 2.39
2303 2318 8.437742 GTGCAATTTAACTTTGGATTTGAGATG 58.562 33.333 0.00 0.00 0.00 2.90
2321 2342 5.771666 TGAGATGAAATTCTCTGGTGCTTTT 59.228 36.000 3.41 0.00 42.22 2.27
2344 2367 9.841295 TTTTCCTTACTCTTGTTTACACAGTAT 57.159 29.630 3.07 0.00 33.22 2.12
2384 2407 6.745159 TTGTTGCTTTCTGTTTGTGTACTA 57.255 33.333 0.00 0.00 0.00 1.82
2385 2408 6.114221 TGTTGCTTTCTGTTTGTGTACTAC 57.886 37.500 0.00 0.00 0.00 2.73
2386 2409 5.878116 TGTTGCTTTCTGTTTGTGTACTACT 59.122 36.000 0.00 0.00 0.00 2.57
2390 2413 5.277828 GCTTTCTGTTTGTGTACTACTTGGG 60.278 44.000 0.00 0.00 0.00 4.12
2545 2568 6.712547 AGAAAAGTCCAGGTTCATAACAAGAG 59.287 38.462 0.00 0.00 0.00 2.85
2611 2634 7.658982 TGTTATCTGATGGATCTGAGCAAATAC 59.341 37.037 0.00 0.00 38.01 1.89
2612 2635 4.625028 TCTGATGGATCTGAGCAAATACG 58.375 43.478 0.00 0.00 32.14 3.06
2613 2636 3.732212 TGATGGATCTGAGCAAATACGG 58.268 45.455 0.00 0.00 0.00 4.02
2614 2637 1.953559 TGGATCTGAGCAAATACGGC 58.046 50.000 0.00 0.00 0.00 5.68
2615 2638 1.209261 TGGATCTGAGCAAATACGGCA 59.791 47.619 0.00 0.00 0.00 5.69
2616 2639 2.288666 GGATCTGAGCAAATACGGCAA 58.711 47.619 0.00 0.00 0.00 4.52
2617 2640 2.880890 GGATCTGAGCAAATACGGCAAT 59.119 45.455 0.00 0.00 0.00 3.56
2618 2641 3.058639 GGATCTGAGCAAATACGGCAATC 60.059 47.826 0.00 0.00 0.00 2.67
2619 2642 1.933181 TCTGAGCAAATACGGCAATCG 59.067 47.619 0.00 0.00 45.88 3.34
2620 2643 0.376852 TGAGCAAATACGGCAATCGC 59.623 50.000 0.00 0.00 43.89 4.58
2621 2644 0.657840 GAGCAAATACGGCAATCGCT 59.342 50.000 0.00 0.00 43.89 4.93
2628 2651 4.494811 CGGCAATCGCTGTCAGTA 57.505 55.556 0.93 0.00 39.88 2.74
2629 2652 2.977700 CGGCAATCGCTGTCAGTAT 58.022 52.632 0.93 0.00 39.88 2.12
2630 2653 0.578683 CGGCAATCGCTGTCAGTATG 59.421 55.000 0.93 0.00 39.88 2.39
2631 2654 1.656652 GGCAATCGCTGTCAGTATGT 58.343 50.000 0.93 0.00 38.60 2.29
2632 2655 2.009774 GGCAATCGCTGTCAGTATGTT 58.990 47.619 0.93 0.00 38.60 2.71
2633 2656 3.194861 GGCAATCGCTGTCAGTATGTTA 58.805 45.455 0.93 0.00 38.60 2.41
2634 2657 3.809832 GGCAATCGCTGTCAGTATGTTAT 59.190 43.478 0.93 0.00 38.60 1.89
2635 2658 4.084328 GGCAATCGCTGTCAGTATGTTATC 60.084 45.833 0.93 0.00 38.60 1.75
2636 2659 4.747108 GCAATCGCTGTCAGTATGTTATCT 59.253 41.667 0.93 0.00 33.80 1.98
2637 2660 5.332883 GCAATCGCTGTCAGTATGTTATCTG 60.333 44.000 0.93 0.00 33.80 2.90
2638 2661 5.774498 ATCGCTGTCAGTATGTTATCTGA 57.226 39.130 0.93 0.00 38.20 3.27
2639 2662 5.774498 TCGCTGTCAGTATGTTATCTGAT 57.226 39.130 0.93 0.00 41.67 2.90
2640 2663 5.523369 TCGCTGTCAGTATGTTATCTGATG 58.477 41.667 0.93 0.00 41.67 3.07
2641 2664 4.683320 CGCTGTCAGTATGTTATCTGATGG 59.317 45.833 0.93 0.00 41.67 3.51
2642 2665 5.507985 CGCTGTCAGTATGTTATCTGATGGA 60.508 44.000 0.93 0.00 41.67 3.41
2643 2666 6.462500 GCTGTCAGTATGTTATCTGATGGAT 58.538 40.000 0.93 0.00 41.67 3.41
2644 2667 6.589523 GCTGTCAGTATGTTATCTGATGGATC 59.410 42.308 0.93 0.00 41.67 3.36
2645 2668 7.525194 GCTGTCAGTATGTTATCTGATGGATCT 60.525 40.741 0.93 0.00 41.67 2.75
2646 2669 7.664758 TGTCAGTATGTTATCTGATGGATCTG 58.335 38.462 0.00 2.57 41.67 2.90
2647 2670 7.506938 TGTCAGTATGTTATCTGATGGATCTGA 59.493 37.037 0.00 4.65 41.67 3.27
2648 2671 8.028354 GTCAGTATGTTATCTGATGGATCTGAG 58.972 40.741 0.00 0.00 41.67 3.35
2649 2672 6.812656 CAGTATGTTATCTGATGGATCTGAGC 59.187 42.308 0.00 0.00 38.01 4.26
2650 2673 5.820404 ATGTTATCTGATGGATCTGAGCA 57.180 39.130 0.00 2.99 38.01 4.26
2651 2674 5.619132 TGTTATCTGATGGATCTGAGCAA 57.381 39.130 0.00 0.00 38.01 3.91
2652 2675 5.993055 TGTTATCTGATGGATCTGAGCAAA 58.007 37.500 0.00 0.00 38.01 3.68
2653 2676 6.598503 TGTTATCTGATGGATCTGAGCAAAT 58.401 36.000 0.00 0.00 38.01 2.32
2654 2677 7.738847 TGTTATCTGATGGATCTGAGCAAATA 58.261 34.615 0.00 0.00 38.01 1.40
2655 2678 7.658982 TGTTATCTGATGGATCTGAGCAAATAC 59.341 37.037 0.00 0.00 38.01 1.89
2671 5362 7.275779 TGAGCAAATACGTTGATTAGAAGTCTC 59.724 37.037 0.00 0.00 39.87 3.36
2674 5365 7.275779 GCAAATACGTTGATTAGAAGTCTCTCA 59.724 37.037 0.00 0.00 39.87 3.27
2720 5411 4.102681 AGTTAGTTAGACTGGTGCCAACTT 59.897 41.667 0.00 0.00 32.09 2.66
2724 5415 2.191128 AGACTGGTGCCAACTTCATC 57.809 50.000 0.00 0.00 0.00 2.92
2759 5450 8.289618 TCATTTTTCGTCATTCCTTACTTTCAG 58.710 33.333 0.00 0.00 0.00 3.02
2771 5462 5.003804 CCTTACTTTCAGTTGTGCCACTAT 58.996 41.667 0.00 0.00 0.00 2.12
2776 5467 4.566545 TTCAGTTGTGCCACTATTGTTG 57.433 40.909 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.710744 CCTCTGTCCCATAATATAAAAGCGTT 59.289 38.462 0.00 0.00 0.00 4.84
1 2 6.231211 CCTCTGTCCCATAATATAAAAGCGT 58.769 40.000 0.00 0.00 0.00 5.07
2 3 5.643777 CCCTCTGTCCCATAATATAAAAGCG 59.356 44.000 0.00 0.00 0.00 4.68
3 4 6.779860 TCCCTCTGTCCCATAATATAAAAGC 58.220 40.000 0.00 0.00 0.00 3.51
4 5 7.978925 ACTCCCTCTGTCCCATAATATAAAAG 58.021 38.462 0.00 0.00 0.00 2.27
5 6 7.947782 ACTCCCTCTGTCCCATAATATAAAA 57.052 36.000 0.00 0.00 0.00 1.52
6 7 8.014263 TGTACTCCCTCTGTCCCATAATATAAA 58.986 37.037 0.00 0.00 0.00 1.40
7 8 7.541074 TGTACTCCCTCTGTCCCATAATATAA 58.459 38.462 0.00 0.00 0.00 0.98
8 9 7.111136 TGTACTCCCTCTGTCCCATAATATA 57.889 40.000 0.00 0.00 0.00 0.86
9 10 5.977533 TGTACTCCCTCTGTCCCATAATAT 58.022 41.667 0.00 0.00 0.00 1.28
10 11 5.412617 TGTACTCCCTCTGTCCCATAATA 57.587 43.478 0.00 0.00 0.00 0.98
11 12 4.280789 TGTACTCCCTCTGTCCCATAAT 57.719 45.455 0.00 0.00 0.00 1.28
12 13 3.769189 TGTACTCCCTCTGTCCCATAA 57.231 47.619 0.00 0.00 0.00 1.90
13 14 3.769189 TTGTACTCCCTCTGTCCCATA 57.231 47.619 0.00 0.00 0.00 2.74
14 15 2.642171 TTGTACTCCCTCTGTCCCAT 57.358 50.000 0.00 0.00 0.00 4.00
15 16 2.257207 CTTTGTACTCCCTCTGTCCCA 58.743 52.381 0.00 0.00 0.00 4.37
16 17 1.066071 GCTTTGTACTCCCTCTGTCCC 60.066 57.143 0.00 0.00 0.00 4.46
17 18 1.903183 AGCTTTGTACTCCCTCTGTCC 59.097 52.381 0.00 0.00 0.00 4.02
18 19 2.354203 CCAGCTTTGTACTCCCTCTGTC 60.354 54.545 0.00 0.00 0.00 3.51
19 20 1.625818 CCAGCTTTGTACTCCCTCTGT 59.374 52.381 0.00 0.00 0.00 3.41
20 21 1.065854 CCCAGCTTTGTACTCCCTCTG 60.066 57.143 0.00 0.00 0.00 3.35
21 22 1.280457 CCCAGCTTTGTACTCCCTCT 58.720 55.000 0.00 0.00 0.00 3.69
22 23 0.393132 GCCCAGCTTTGTACTCCCTC 60.393 60.000 0.00 0.00 0.00 4.30
23 24 0.842467 AGCCCAGCTTTGTACTCCCT 60.842 55.000 0.00 0.00 33.89 4.20
24 25 0.393132 GAGCCCAGCTTTGTACTCCC 60.393 60.000 0.00 0.00 39.88 4.30
25 26 0.393132 GGAGCCCAGCTTTGTACTCC 60.393 60.000 0.00 0.00 39.88 3.85
26 27 0.615850 AGGAGCCCAGCTTTGTACTC 59.384 55.000 0.00 0.00 39.88 2.59
27 28 0.615850 GAGGAGCCCAGCTTTGTACT 59.384 55.000 0.00 0.00 39.88 2.73
28 29 0.615850 AGAGGAGCCCAGCTTTGTAC 59.384 55.000 0.00 0.00 39.88 2.90
29 30 0.615331 CAGAGGAGCCCAGCTTTGTA 59.385 55.000 0.00 0.00 39.88 2.41
30 31 1.130054 TCAGAGGAGCCCAGCTTTGT 61.130 55.000 0.00 0.00 39.88 2.83
31 32 0.255318 ATCAGAGGAGCCCAGCTTTG 59.745 55.000 0.00 0.00 39.88 2.77
32 33 0.255318 CATCAGAGGAGCCCAGCTTT 59.745 55.000 0.00 0.00 39.88 3.51
33 34 0.619832 TCATCAGAGGAGCCCAGCTT 60.620 55.000 0.00 0.00 39.88 3.74
34 35 0.400237 ATCATCAGAGGAGCCCAGCT 60.400 55.000 0.00 0.00 43.88 4.24
35 36 0.250381 CATCATCAGAGGAGCCCAGC 60.250 60.000 0.00 0.00 0.00 4.85
36 37 0.250381 GCATCATCAGAGGAGCCCAG 60.250 60.000 0.00 0.00 0.00 4.45
37 38 0.693430 AGCATCATCAGAGGAGCCCA 60.693 55.000 0.00 0.00 0.00 5.36
38 39 0.250381 CAGCATCATCAGAGGAGCCC 60.250 60.000 0.00 0.00 0.00 5.19
39 40 0.885596 GCAGCATCATCAGAGGAGCC 60.886 60.000 0.00 0.00 0.00 4.70
40 41 0.179054 TGCAGCATCATCAGAGGAGC 60.179 55.000 0.00 0.00 0.00 4.70
41 42 1.139256 AGTGCAGCATCATCAGAGGAG 59.861 52.381 0.00 0.00 0.00 3.69
42 43 1.201424 AGTGCAGCATCATCAGAGGA 58.799 50.000 0.00 0.00 0.00 3.71
43 44 2.039818 AAGTGCAGCATCATCAGAGG 57.960 50.000 0.00 0.00 0.00 3.69
44 45 4.052608 CTCTAAGTGCAGCATCATCAGAG 58.947 47.826 0.00 3.41 0.00 3.35
45 46 3.740452 GCTCTAAGTGCAGCATCATCAGA 60.740 47.826 0.00 0.00 35.56 3.27
46 47 2.544686 GCTCTAAGTGCAGCATCATCAG 59.455 50.000 0.00 0.00 35.56 2.90
47 48 2.093341 TGCTCTAAGTGCAGCATCATCA 60.093 45.455 0.00 0.00 40.80 3.07
48 49 2.558378 TGCTCTAAGTGCAGCATCATC 58.442 47.619 0.00 0.00 40.80 2.92
49 50 2.704464 TGCTCTAAGTGCAGCATCAT 57.296 45.000 0.00 0.00 40.80 2.45
54 55 1.134580 TGGAGATGCTCTAAGTGCAGC 60.135 52.381 4.05 4.05 45.82 5.25
55 56 2.935201 GTTGGAGATGCTCTAAGTGCAG 59.065 50.000 2.83 0.00 44.04 4.41
56 57 2.302733 TGTTGGAGATGCTCTAAGTGCA 59.697 45.455 0.00 0.00 44.95 4.57
57 58 2.935201 CTGTTGGAGATGCTCTAAGTGC 59.065 50.000 0.00 0.00 31.92 4.40
58 59 4.180057 GTCTGTTGGAGATGCTCTAAGTG 58.820 47.826 0.00 0.00 31.92 3.16
59 60 3.119316 CGTCTGTTGGAGATGCTCTAAGT 60.119 47.826 0.00 0.00 31.92 2.24
60 61 3.443037 CGTCTGTTGGAGATGCTCTAAG 58.557 50.000 0.00 0.00 31.92 2.18
61 62 3.510388 CGTCTGTTGGAGATGCTCTAA 57.490 47.619 0.00 0.00 30.78 2.10
67 68 0.179137 TAGCGCGTCTGTTGGAGATG 60.179 55.000 8.43 0.00 40.33 2.90
68 69 0.747255 ATAGCGCGTCTGTTGGAGAT 59.253 50.000 8.43 0.00 31.63 2.75
69 70 1.385528 TATAGCGCGTCTGTTGGAGA 58.614 50.000 8.43 0.00 0.00 3.71
70 71 2.423926 ATATAGCGCGTCTGTTGGAG 57.576 50.000 8.43 0.00 0.00 3.86
71 72 3.855895 GCTTATATAGCGCGTCTGTTGGA 60.856 47.826 8.43 0.00 40.71 3.53
72 73 2.408704 GCTTATATAGCGCGTCTGTTGG 59.591 50.000 8.43 0.00 40.71 3.77
73 74 3.689897 GCTTATATAGCGCGTCTGTTG 57.310 47.619 8.43 0.00 40.71 3.33
93 94 0.641783 AGTTTTTATACCGCGCGTCG 59.358 50.000 29.95 17.12 38.08 5.12
94 95 1.391144 ACAGTTTTTATACCGCGCGTC 59.609 47.619 29.95 7.02 0.00 5.19
95 96 1.431496 ACAGTTTTTATACCGCGCGT 58.569 45.000 29.95 18.85 0.00 6.01
96 97 2.513964 AACAGTTTTTATACCGCGCG 57.486 45.000 25.67 25.67 0.00 6.86
97 98 5.219896 GCTAAAAACAGTTTTTATACCGCGC 60.220 40.000 24.95 20.26 42.36 6.86
98 99 5.001819 CGCTAAAAACAGTTTTTATACCGCG 59.998 40.000 29.18 29.18 43.14 6.46
99 100 5.219896 GCGCTAAAAACAGTTTTTATACCGC 60.220 40.000 30.12 30.12 42.36 5.68
100 101 5.001819 CGCGCTAAAAACAGTTTTTATACCG 59.998 40.000 24.95 24.62 42.36 4.02
101 102 5.219896 GCGCGCTAAAAACAGTTTTTATACC 60.220 40.000 26.67 17.04 42.36 2.73
102 103 5.494331 CGCGCGCTAAAAACAGTTTTTATAC 60.494 40.000 30.48 19.73 42.36 1.47
103 104 4.550362 CGCGCGCTAAAAACAGTTTTTATA 59.450 37.500 30.48 11.37 42.36 0.98
104 105 3.359580 CGCGCGCTAAAAACAGTTTTTAT 59.640 39.130 30.48 9.34 42.36 1.40
105 106 2.714985 CGCGCGCTAAAAACAGTTTTTA 59.285 40.909 30.48 23.77 42.43 1.52
106 107 1.515221 CGCGCGCTAAAAACAGTTTTT 59.485 42.857 30.48 24.06 44.43 1.94
107 108 1.117234 CGCGCGCTAAAAACAGTTTT 58.883 45.000 30.48 5.37 40.15 2.43
108 109 1.266124 GCGCGCGCTAAAAACAGTTT 61.266 50.000 44.38 0.00 38.26 2.66
109 110 1.724581 GCGCGCGCTAAAAACAGTT 60.725 52.632 44.38 0.00 38.26 3.16
110 111 2.127383 GCGCGCGCTAAAAACAGT 60.127 55.556 44.38 0.00 38.26 3.55
111 112 3.223688 CGCGCGCGCTAAAAACAG 61.224 61.111 45.97 27.76 39.32 3.16
112 113 4.728095 CCGCGCGCGCTAAAAACA 62.728 61.111 45.97 0.00 39.32 2.83
113 114 4.433431 TCCGCGCGCGCTAAAAAC 62.433 61.111 45.97 21.25 39.32 2.43
114 115 4.433431 GTCCGCGCGCGCTAAAAA 62.433 61.111 45.97 26.44 39.32 1.94
122 123 3.718480 GAAAATCAGGTCCGCGCGC 62.718 63.158 27.36 23.91 0.00 6.86
123 124 2.296692 CTGAAAATCAGGTCCGCGCG 62.297 60.000 25.67 25.67 40.71 6.86
124 125 1.425428 CTGAAAATCAGGTCCGCGC 59.575 57.895 0.00 0.00 40.71 6.86
133 134 1.945819 GCCGCTGGAGACTGAAAATCA 60.946 52.381 0.00 0.00 0.00 2.57
134 135 0.729690 GCCGCTGGAGACTGAAAATC 59.270 55.000 0.00 0.00 0.00 2.17
135 136 0.678048 GGCCGCTGGAGACTGAAAAT 60.678 55.000 0.00 0.00 0.00 1.82
136 137 1.302511 GGCCGCTGGAGACTGAAAA 60.303 57.895 0.00 0.00 0.00 2.29
137 138 2.347490 GGCCGCTGGAGACTGAAA 59.653 61.111 0.00 0.00 0.00 2.69
138 139 4.069232 CGGCCGCTGGAGACTGAA 62.069 66.667 14.67 0.00 0.00 3.02
146 147 4.277593 TTTTTGTGCGGCCGCTGG 62.278 61.111 45.79 11.81 42.51 4.85
166 167 0.516524 GCATTAGTTATAGCGCGCGC 60.517 55.000 45.10 45.10 42.33 6.86
167 168 0.781787 TGCATTAGTTATAGCGCGCG 59.218 50.000 28.44 28.44 0.00 6.86
168 169 1.462541 GCTGCATTAGTTATAGCGCGC 60.463 52.381 26.66 26.66 0.00 6.86
169 170 2.493997 GCTGCATTAGTTATAGCGCG 57.506 50.000 0.00 0.00 0.00 6.86
172 173 1.462541 GCGCGCTGCATTAGTTATAGC 60.463 52.381 26.67 0.00 45.45 2.97
173 174 1.201704 CGCGCGCTGCATTAGTTATAG 60.202 52.381 30.48 3.74 46.97 1.31
174 175 0.781787 CGCGCGCTGCATTAGTTATA 59.218 50.000 30.48 0.00 46.97 0.98
175 176 1.564622 CGCGCGCTGCATTAGTTAT 59.435 52.632 30.48 0.00 46.97 1.89
176 177 3.002673 CGCGCGCTGCATTAGTTA 58.997 55.556 30.48 0.00 46.97 2.24
177 178 4.520846 GCGCGCGCTGCATTAGTT 62.521 61.111 44.38 0.00 46.97 2.24
187 188 1.789739 CTAAATATGCTGCGCGCGC 60.790 57.895 45.02 45.02 43.27 6.86
188 189 0.719194 CACTAAATATGCTGCGCGCG 60.719 55.000 28.44 28.44 43.27 6.86
189 190 0.993746 GCACTAAATATGCTGCGCGC 60.994 55.000 27.26 27.26 40.08 6.86
190 191 0.719194 CGCACTAAATATGCTGCGCG 60.719 55.000 0.00 0.00 45.19 6.86
191 192 3.062786 CGCACTAAATATGCTGCGC 57.937 52.632 0.00 0.00 45.19 6.09
193 194 1.070577 CGGACGCACTAAATATGCTGC 60.071 52.381 0.00 0.00 41.10 5.25
194 195 1.526887 CCGGACGCACTAAATATGCTG 59.473 52.381 0.00 0.00 41.10 4.41
195 196 1.138266 ACCGGACGCACTAAATATGCT 59.862 47.619 9.46 0.00 41.10 3.79
196 197 1.525619 GACCGGACGCACTAAATATGC 59.474 52.381 9.46 0.00 39.81 3.14
197 198 1.784856 CGACCGGACGCACTAAATATG 59.215 52.381 14.33 0.00 0.00 1.78
198 199 2.129823 CGACCGGACGCACTAAATAT 57.870 50.000 14.33 0.00 0.00 1.28
199 200 3.628005 CGACCGGACGCACTAAATA 57.372 52.632 14.33 0.00 0.00 1.40
200 201 4.489249 CGACCGGACGCACTAAAT 57.511 55.556 14.33 0.00 0.00 1.40
217 218 3.479269 AGAGTTTACAGCGCGCGC 61.479 61.111 45.10 45.10 42.33 6.86
218 219 2.391821 CAGAGTTTACAGCGCGCG 59.608 61.111 28.44 28.44 0.00 6.86
219 220 2.740714 CCCAGAGTTTACAGCGCGC 61.741 63.158 26.66 26.66 0.00 6.86
220 221 2.740714 GCCCAGAGTTTACAGCGCG 61.741 63.158 0.00 0.00 0.00 6.86
221 222 1.376037 AGCCCAGAGTTTACAGCGC 60.376 57.895 0.00 0.00 0.00 5.92
222 223 0.037326 TCAGCCCAGAGTTTACAGCG 60.037 55.000 0.00 0.00 0.00 5.18
223 224 2.012673 CATCAGCCCAGAGTTTACAGC 58.987 52.381 0.00 0.00 0.00 4.40
224 225 2.012673 GCATCAGCCCAGAGTTTACAG 58.987 52.381 0.00 0.00 33.58 2.74
225 226 1.350684 TGCATCAGCCCAGAGTTTACA 59.649 47.619 0.00 0.00 41.13 2.41
226 227 2.012673 CTGCATCAGCCCAGAGTTTAC 58.987 52.381 0.00 0.00 41.13 2.01
227 228 1.908619 TCTGCATCAGCCCAGAGTTTA 59.091 47.619 0.00 0.00 41.13 2.01
228 229 0.694771 TCTGCATCAGCCCAGAGTTT 59.305 50.000 0.00 0.00 41.13 2.66
229 230 0.917533 ATCTGCATCAGCCCAGAGTT 59.082 50.000 0.00 0.00 41.00 3.01
230 231 0.180642 CATCTGCATCAGCCCAGAGT 59.819 55.000 0.00 0.00 41.00 3.24
231 232 0.535328 CCATCTGCATCAGCCCAGAG 60.535 60.000 0.00 0.00 41.00 3.35
232 233 1.530283 CCATCTGCATCAGCCCAGA 59.470 57.895 0.00 0.00 41.81 3.86
233 234 1.528542 CCCATCTGCATCAGCCCAG 60.529 63.158 0.00 0.00 41.13 4.45
234 235 2.002407 TCCCATCTGCATCAGCCCA 61.002 57.895 0.00 0.00 41.13 5.36
235 236 1.527844 GTCCCATCTGCATCAGCCC 60.528 63.158 0.00 0.00 41.13 5.19
236 237 1.527844 GGTCCCATCTGCATCAGCC 60.528 63.158 0.00 0.00 41.13 4.85
237 238 1.890979 CGGTCCCATCTGCATCAGC 60.891 63.158 0.00 0.00 42.57 4.26
238 239 1.890979 GCGGTCCCATCTGCATCAG 60.891 63.158 0.00 0.00 39.28 2.90
239 240 1.913951 AAGCGGTCCCATCTGCATCA 61.914 55.000 0.00 0.00 41.63 3.07
240 241 1.153086 AAGCGGTCCCATCTGCATC 60.153 57.895 0.00 0.00 41.63 3.91
241 242 1.452651 CAAGCGGTCCCATCTGCAT 60.453 57.895 0.00 0.00 41.63 3.96
242 243 1.913951 ATCAAGCGGTCCCATCTGCA 61.914 55.000 0.00 0.00 41.63 4.41
243 244 0.749454 AATCAAGCGGTCCCATCTGC 60.749 55.000 0.00 0.00 39.72 4.26
244 245 1.019673 CAATCAAGCGGTCCCATCTG 58.980 55.000 0.00 0.00 0.00 2.90
245 246 0.107017 CCAATCAAGCGGTCCCATCT 60.107 55.000 0.00 0.00 0.00 2.90
246 247 1.103398 CCCAATCAAGCGGTCCCATC 61.103 60.000 0.00 0.00 0.00 3.51
247 248 1.076777 CCCAATCAAGCGGTCCCAT 60.077 57.895 0.00 0.00 0.00 4.00
248 249 2.227757 TCCCAATCAAGCGGTCCCA 61.228 57.895 0.00 0.00 0.00 4.37
249 250 1.749258 GTCCCAATCAAGCGGTCCC 60.749 63.158 0.00 0.00 0.00 4.46
250 251 1.749258 GGTCCCAATCAAGCGGTCC 60.749 63.158 0.00 0.00 0.00 4.46
251 252 2.106683 CGGTCCCAATCAAGCGGTC 61.107 63.158 0.00 0.00 33.05 4.79
252 253 2.046314 CGGTCCCAATCAAGCGGT 60.046 61.111 0.00 0.00 33.05 5.68
253 254 3.508840 GCGGTCCCAATCAAGCGG 61.509 66.667 0.00 0.00 36.91 5.52
254 255 2.436646 AGCGGTCCCAATCAAGCG 60.437 61.111 0.00 0.00 39.26 4.68
255 256 2.409870 CCAGCGGTCCCAATCAAGC 61.410 63.158 0.00 0.00 0.00 4.01
256 257 1.026718 GTCCAGCGGTCCCAATCAAG 61.027 60.000 0.00 0.00 0.00 3.02
257 258 1.002624 GTCCAGCGGTCCCAATCAA 60.003 57.895 0.00 0.00 0.00 2.57
258 259 1.899437 GAGTCCAGCGGTCCCAATCA 61.899 60.000 0.00 0.00 0.00 2.57
259 260 1.153349 GAGTCCAGCGGTCCCAATC 60.153 63.158 0.00 0.00 0.00 2.67
260 261 2.990479 GAGTCCAGCGGTCCCAAT 59.010 61.111 0.00 0.00 0.00 3.16
261 262 3.691342 CGAGTCCAGCGGTCCCAA 61.691 66.667 0.00 0.00 0.00 4.12
275 276 2.350192 TGTAAAATATGGTGCACGCGAG 59.650 45.455 15.93 5.97 0.00 5.03
276 277 2.347731 TGTAAAATATGGTGCACGCGA 58.652 42.857 15.93 0.00 0.00 5.87
277 278 2.704037 CTGTAAAATATGGTGCACGCG 58.296 47.619 11.45 3.53 0.00 6.01
278 279 2.450160 GCTGTAAAATATGGTGCACGC 58.550 47.619 11.45 4.50 0.00 5.34
279 280 2.704037 CGCTGTAAAATATGGTGCACG 58.296 47.619 11.45 0.00 0.00 5.34
280 281 2.097466 AGCGCTGTAAAATATGGTGCAC 59.903 45.455 10.39 8.80 36.10 4.57
281 282 2.364632 AGCGCTGTAAAATATGGTGCA 58.635 42.857 10.39 0.00 36.10 4.57
282 283 3.108144 CAAGCGCTGTAAAATATGGTGC 58.892 45.455 12.58 0.00 0.00 5.01
283 284 4.355543 ACAAGCGCTGTAAAATATGGTG 57.644 40.909 12.58 2.69 36.10 4.17
284 285 4.380444 CCAACAAGCGCTGTAAAATATGGT 60.380 41.667 12.58 0.00 37.23 3.55
285 286 4.104776 CCAACAAGCGCTGTAAAATATGG 58.895 43.478 12.58 10.73 37.23 2.74
286 287 4.980590 TCCAACAAGCGCTGTAAAATATG 58.019 39.130 12.58 5.08 37.23 1.78
287 288 4.438744 GCTCCAACAAGCGCTGTAAAATAT 60.439 41.667 12.58 0.00 37.23 1.28
288 289 3.119990 GCTCCAACAAGCGCTGTAAAATA 60.120 43.478 12.58 0.00 37.23 1.40
289 290 2.351738 GCTCCAACAAGCGCTGTAAAAT 60.352 45.455 12.58 0.00 37.23 1.82
290 291 1.001815 GCTCCAACAAGCGCTGTAAAA 60.002 47.619 12.58 0.00 37.23 1.52
291 292 0.591170 GCTCCAACAAGCGCTGTAAA 59.409 50.000 12.58 0.22 37.23 2.01
292 293 0.533978 TGCTCCAACAAGCGCTGTAA 60.534 50.000 12.58 0.56 45.54 2.41
293 294 0.533978 TTGCTCCAACAAGCGCTGTA 60.534 50.000 12.58 0.00 45.54 2.74
294 295 1.383456 TTTGCTCCAACAAGCGCTGT 61.383 50.000 12.58 8.89 45.54 4.40
295 296 0.936297 GTTTGCTCCAACAAGCGCTG 60.936 55.000 12.58 8.13 45.54 5.18
296 297 1.360192 GTTTGCTCCAACAAGCGCT 59.640 52.632 2.64 2.64 45.54 5.92
297 298 2.010817 CGTTTGCTCCAACAAGCGC 61.011 57.895 0.00 0.00 44.96 5.92
298 299 4.210447 CGTTTGCTCCAACAAGCG 57.790 55.556 0.00 0.00 45.37 4.68
299 300 0.663153 AGACGTTTGCTCCAACAAGC 59.337 50.000 0.00 0.00 42.82 4.01
300 301 2.614057 AGAAGACGTTTGCTCCAACAAG 59.386 45.455 0.00 0.00 0.00 3.16
301 302 2.639065 AGAAGACGTTTGCTCCAACAA 58.361 42.857 0.00 0.00 0.00 2.83
302 303 2.325583 AGAAGACGTTTGCTCCAACA 57.674 45.000 0.00 0.00 0.00 3.33
303 304 2.157863 GCTAGAAGACGTTTGCTCCAAC 59.842 50.000 0.00 0.00 0.00 3.77
304 305 2.413837 GCTAGAAGACGTTTGCTCCAA 58.586 47.619 0.00 0.00 0.00 3.53
305 306 1.668919 CGCTAGAAGACGTTTGCTCCA 60.669 52.381 0.00 0.00 0.00 3.86
306 307 0.992802 CGCTAGAAGACGTTTGCTCC 59.007 55.000 0.00 0.00 0.00 4.70
307 308 0.367210 GCGCTAGAAGACGTTTGCTC 59.633 55.000 0.00 0.00 0.00 4.26
308 309 0.038159 AGCGCTAGAAGACGTTTGCT 60.038 50.000 8.99 0.00 0.00 3.91
309 310 0.367210 GAGCGCTAGAAGACGTTTGC 59.633 55.000 11.50 0.00 0.00 3.68
310 311 1.983972 AGAGCGCTAGAAGACGTTTG 58.016 50.000 11.50 0.00 0.00 2.93
311 312 3.844577 TTAGAGCGCTAGAAGACGTTT 57.155 42.857 11.50 0.00 0.00 3.60
312 313 3.844577 TTTAGAGCGCTAGAAGACGTT 57.155 42.857 11.50 0.00 0.00 3.99
313 314 3.844577 TTTTAGAGCGCTAGAAGACGT 57.155 42.857 11.50 0.00 0.00 4.34
332 333 5.801444 GGTTTACAACGTGCAAGTAGTTTTT 59.199 36.000 5.50 0.00 0.00 1.94
333 334 5.334319 GGTTTACAACGTGCAAGTAGTTTT 58.666 37.500 5.50 0.00 0.00 2.43
334 335 4.201940 GGGTTTACAACGTGCAAGTAGTTT 60.202 41.667 5.50 0.00 0.00 2.66
335 336 3.313249 GGGTTTACAACGTGCAAGTAGTT 59.687 43.478 5.50 0.00 0.00 2.24
336 337 2.874086 GGGTTTACAACGTGCAAGTAGT 59.126 45.455 5.50 0.00 0.00 2.73
337 338 2.096614 CGGGTTTACAACGTGCAAGTAG 60.097 50.000 5.50 0.00 0.00 2.57
338 339 1.865970 CGGGTTTACAACGTGCAAGTA 59.134 47.619 5.50 0.00 0.00 2.24
339 340 0.658897 CGGGTTTACAACGTGCAAGT 59.341 50.000 0.00 0.00 0.00 3.16
340 341 0.658897 ACGGGTTTACAACGTGCAAG 59.341 50.000 0.00 0.00 39.64 4.01
341 342 1.093159 AACGGGTTTACAACGTGCAA 58.907 45.000 0.00 0.00 41.12 4.08
342 343 1.093159 AAACGGGTTTACAACGTGCA 58.907 45.000 0.00 0.00 41.12 4.57
343 344 2.191815 AAAACGGGTTTACAACGTGC 57.808 45.000 0.00 0.00 41.12 5.34
374 375 1.718757 CTCCAACAGCCGCCTAATGC 61.719 60.000 0.00 0.00 0.00 3.56
375 376 0.107703 TCTCCAACAGCCGCCTAATG 60.108 55.000 0.00 0.00 0.00 1.90
376 377 0.839946 ATCTCCAACAGCCGCCTAAT 59.160 50.000 0.00 0.00 0.00 1.73
377 378 0.107703 CATCTCCAACAGCCGCCTAA 60.108 55.000 0.00 0.00 0.00 2.69
378 379 1.522092 CATCTCCAACAGCCGCCTA 59.478 57.895 0.00 0.00 0.00 3.93
379 380 2.270205 CATCTCCAACAGCCGCCT 59.730 61.111 0.00 0.00 0.00 5.52
380 381 3.512516 GCATCTCCAACAGCCGCC 61.513 66.667 0.00 0.00 0.00 6.13
381 382 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
382 383 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
393 394 6.480524 TTATGTGTTGTGTGTAAGAGCATC 57.519 37.500 0.00 0.00 0.00 3.91
394 395 6.875948 TTTATGTGTTGTGTGTAAGAGCAT 57.124 33.333 0.00 0.00 0.00 3.79
398 399 9.378551 GGATCTATTTATGTGTTGTGTGTAAGA 57.621 33.333 0.00 0.00 0.00 2.10
430 431 2.597505 GCGCGTAATCTACTGTTGCATG 60.598 50.000 8.43 0.00 0.00 4.06
502 503 3.933332 GGGTATCTTCAAGGAAGTGTTCG 59.067 47.826 5.94 0.00 40.24 3.95
550 551 1.623811 TGGACCTTGGAGCTGTTCTAC 59.376 52.381 0.00 0.00 0.00 2.59
620 621 4.767409 GGTCTGGGCTAAAATATTGGGATC 59.233 45.833 0.00 0.00 0.00 3.36
649 650 1.586154 CCTCCGGCGATTGCTTTTGT 61.586 55.000 9.30 0.00 42.25 2.83
651 652 2.700773 GCCTCCGGCGATTGCTTTT 61.701 57.895 9.30 0.00 39.62 2.27
664 665 2.029221 GATTAGCGTCCGGCCTCC 59.971 66.667 0.00 0.00 45.17 4.30
665 666 0.672342 TAAGATTAGCGTCCGGCCTC 59.328 55.000 0.00 0.00 45.17 4.70
666 667 0.388294 GTAAGATTAGCGTCCGGCCT 59.612 55.000 0.00 0.00 45.17 5.19
667 668 0.599466 GGTAAGATTAGCGTCCGGCC 60.599 60.000 0.00 0.00 45.17 6.13
675 676 1.884235 ATGCCTGCGGTAAGATTAGC 58.116 50.000 0.00 0.00 0.00 3.09
703 707 3.726517 AATGGCGTGTCGTGCTGC 61.727 61.111 0.00 0.00 0.00 5.25
728 732 4.382345 AGCTTGAGCCAAAAATGATAGC 57.618 40.909 0.00 0.00 43.38 2.97
729 733 6.312180 GGAAAAGCTTGAGCCAAAAATGATAG 59.688 38.462 0.00 0.00 43.38 2.08
730 734 6.014327 AGGAAAAGCTTGAGCCAAAAATGATA 60.014 34.615 0.00 0.00 43.38 2.15
731 735 4.999311 GGAAAAGCTTGAGCCAAAAATGAT 59.001 37.500 0.00 0.00 43.38 2.45
761 765 5.789643 AACAAGACAAGCCAACATGTAAT 57.210 34.783 0.00 0.00 0.00 1.89
762 766 5.590530 AAACAAGACAAGCCAACATGTAA 57.409 34.783 0.00 0.00 0.00 2.41
772 776 4.257267 AGCCCAAATAAACAAGACAAGC 57.743 40.909 0.00 0.00 0.00 4.01
816 820 2.644992 CAGCTTTCGGTTGGTGCC 59.355 61.111 0.00 0.00 0.00 5.01
905 913 0.508641 CGTCCGCTTCTTGTTGTGAG 59.491 55.000 0.00 0.00 0.00 3.51
953 961 2.021457 CTTCTTCTCCCTCGTCCTCTC 58.979 57.143 0.00 0.00 0.00 3.20
954 962 1.958069 GCTTCTTCTCCCTCGTCCTCT 60.958 57.143 0.00 0.00 0.00 3.69
965 973 1.458827 CTGCGTGTGAAGCTTCTTCTC 59.541 52.381 26.09 17.40 35.28 2.87
1187 1195 4.966787 GGTTCCTGTTGGCGGCCA 62.967 66.667 19.77 19.77 0.00 5.36
1756 1770 1.357991 GCCTTGTTGCTCTCGCTCTC 61.358 60.000 0.00 0.00 36.97 3.20
1764 1778 1.246737 CCTCCCTTGCCTTGTTGCTC 61.247 60.000 0.00 0.00 0.00 4.26
1924 1938 0.759060 TGGATGGACGGATGGATCGT 60.759 55.000 0.00 0.00 44.03 3.73
1928 1942 0.104986 AGGATGGATGGACGGATGGA 60.105 55.000 0.00 0.00 0.00 3.41
1929 1943 0.322975 GAGGATGGATGGACGGATGG 59.677 60.000 0.00 0.00 0.00 3.51
1930 1944 1.274728 GAGAGGATGGATGGACGGATG 59.725 57.143 0.00 0.00 0.00 3.51
1931 1945 1.638529 GAGAGGATGGATGGACGGAT 58.361 55.000 0.00 0.00 0.00 4.18
1932 1946 0.470080 GGAGAGGATGGATGGACGGA 60.470 60.000 0.00 0.00 0.00 4.69
1933 1947 0.470833 AGGAGAGGATGGATGGACGG 60.471 60.000 0.00 0.00 0.00 4.79
1934 1948 1.342819 GAAGGAGAGGATGGATGGACG 59.657 57.143 0.00 0.00 0.00 4.79
1935 1949 2.368221 CAGAAGGAGAGGATGGATGGAC 59.632 54.545 0.00 0.00 0.00 4.02
2003 2017 0.530650 TCAGAATGAGAATCGGCGGC 60.531 55.000 7.21 0.00 42.56 6.53
2004 2018 3.667448 TCAGAATGAGAATCGGCGG 57.333 52.632 7.21 0.00 42.56 6.13
2038 2052 0.655337 CGATCCATGCGCAAATCGTG 60.655 55.000 29.60 18.93 41.07 4.35
2049 2063 2.155732 CGAATCCTTTACGCGATCCATG 59.844 50.000 15.93 0.00 0.00 3.66
2104 2118 1.139947 GCTGAGAGACCTACACGCC 59.860 63.158 0.00 0.00 0.00 5.68
2218 2233 4.948621 ACTCCTCACACATACTACAGGTAC 59.051 45.833 0.00 0.00 32.72 3.34
2219 2234 5.188988 ACTCCTCACACATACTACAGGTA 57.811 43.478 0.00 0.00 34.62 3.08
2220 2235 4.048970 ACTCCTCACACATACTACAGGT 57.951 45.455 0.00 0.00 0.00 4.00
2221 2236 6.716934 ATTACTCCTCACACATACTACAGG 57.283 41.667 0.00 0.00 0.00 4.00
2222 2237 9.067986 TCATATTACTCCTCACACATACTACAG 57.932 37.037 0.00 0.00 0.00 2.74
2223 2238 8.990163 TCATATTACTCCTCACACATACTACA 57.010 34.615 0.00 0.00 0.00 2.74
2227 2242 7.941919 TCACTCATATTACTCCTCACACATAC 58.058 38.462 0.00 0.00 0.00 2.39
2228 2243 8.533569 TTCACTCATATTACTCCTCACACATA 57.466 34.615 0.00 0.00 0.00 2.29
2229 2244 7.124901 ACTTCACTCATATTACTCCTCACACAT 59.875 37.037 0.00 0.00 0.00 3.21
2230 2245 6.437477 ACTTCACTCATATTACTCCTCACACA 59.563 38.462 0.00 0.00 0.00 3.72
2231 2246 6.754209 CACTTCACTCATATTACTCCTCACAC 59.246 42.308 0.00 0.00 0.00 3.82
2303 2318 5.459536 AAGGAAAAGCACCAGAGAATTTC 57.540 39.130 0.00 0.00 0.00 2.17
2321 2342 6.872020 GCATACTGTGTAAACAAGAGTAAGGA 59.128 38.462 7.13 0.00 31.10 3.36
2344 2367 4.261572 GCAACAAATCCTTAACAGTCAGCA 60.262 41.667 0.00 0.00 0.00 4.41
2384 2407 5.721000 TGGCATCAAATTAATTCTCCCAAGT 59.279 36.000 0.10 0.00 0.00 3.16
2385 2408 6.044682 GTGGCATCAAATTAATTCTCCCAAG 58.955 40.000 0.10 0.00 0.00 3.61
2386 2409 5.104982 GGTGGCATCAAATTAATTCTCCCAA 60.105 40.000 0.10 0.00 0.00 4.12
2390 2413 5.248870 ACGGTGGCATCAAATTAATTCTC 57.751 39.130 0.10 0.00 0.00 2.87
2545 2568 0.725117 GGCCATACACAACGTACAGC 59.275 55.000 0.00 0.00 31.27 4.40
2611 2634 0.578683 CATACTGACAGCGATTGCCG 59.421 55.000 1.25 0.00 44.31 5.69
2612 2635 1.656652 ACATACTGACAGCGATTGCC 58.343 50.000 1.25 0.00 44.31 4.52
2613 2636 4.747108 AGATAACATACTGACAGCGATTGC 59.253 41.667 1.25 0.00 43.24 3.56
2614 2637 5.979517 TCAGATAACATACTGACAGCGATTG 59.020 40.000 1.25 0.00 38.08 2.67
2615 2638 6.149129 TCAGATAACATACTGACAGCGATT 57.851 37.500 1.25 0.00 38.08 3.34
2616 2639 5.774498 TCAGATAACATACTGACAGCGAT 57.226 39.130 1.25 0.00 38.08 4.58
2617 2640 5.507985 CCATCAGATAACATACTGACAGCGA 60.508 44.000 1.25 0.00 44.18 4.93
2618 2641 4.683320 CCATCAGATAACATACTGACAGCG 59.317 45.833 1.25 0.00 44.18 5.18
2619 2642 5.847304 TCCATCAGATAACATACTGACAGC 58.153 41.667 1.25 0.00 44.18 4.40
2620 2643 7.813627 CAGATCCATCAGATAACATACTGACAG 59.186 40.741 0.00 0.00 44.18 3.51
2621 2644 7.506938 TCAGATCCATCAGATAACATACTGACA 59.493 37.037 0.00 0.00 44.18 3.58
2622 2645 7.890515 TCAGATCCATCAGATAACATACTGAC 58.109 38.462 0.00 0.00 44.18 3.51
2623 2646 7.309683 GCTCAGATCCATCAGATAACATACTGA 60.310 40.741 0.00 0.00 45.19 3.41
2624 2647 6.812656 GCTCAGATCCATCAGATAACATACTG 59.187 42.308 0.00 0.00 34.42 2.74
2625 2648 6.496218 TGCTCAGATCCATCAGATAACATACT 59.504 38.462 0.00 0.00 34.42 2.12
2626 2649 6.695429 TGCTCAGATCCATCAGATAACATAC 58.305 40.000 0.00 0.00 34.42 2.39
2627 2650 6.923199 TGCTCAGATCCATCAGATAACATA 57.077 37.500 0.00 0.00 34.42 2.29
2628 2651 5.820404 TGCTCAGATCCATCAGATAACAT 57.180 39.130 0.00 0.00 34.42 2.71
2629 2652 5.619132 TTGCTCAGATCCATCAGATAACA 57.381 39.130 0.00 0.00 34.42 2.41
2630 2653 7.148672 CGTATTTGCTCAGATCCATCAGATAAC 60.149 40.741 0.00 0.00 34.42 1.89
2631 2654 6.870439 CGTATTTGCTCAGATCCATCAGATAA 59.130 38.462 0.00 0.00 34.42 1.75
2632 2655 6.015095 ACGTATTTGCTCAGATCCATCAGATA 60.015 38.462 0.00 0.00 34.42 1.98
2633 2656 5.221601 ACGTATTTGCTCAGATCCATCAGAT 60.222 40.000 0.00 0.00 38.17 2.90
2634 2657 4.100035 ACGTATTTGCTCAGATCCATCAGA 59.900 41.667 0.00 0.00 0.00 3.27
2635 2658 4.375272 ACGTATTTGCTCAGATCCATCAG 58.625 43.478 0.00 0.00 0.00 2.90
2636 2659 4.406648 ACGTATTTGCTCAGATCCATCA 57.593 40.909 0.00 0.00 0.00 3.07
2637 2660 4.811024 TCAACGTATTTGCTCAGATCCATC 59.189 41.667 0.00 0.00 34.88 3.51
2638 2661 4.769688 TCAACGTATTTGCTCAGATCCAT 58.230 39.130 0.00 0.00 34.88 3.41
2639 2662 4.200838 TCAACGTATTTGCTCAGATCCA 57.799 40.909 0.00 0.00 34.88 3.41
2640 2663 5.741388 AATCAACGTATTTGCTCAGATCC 57.259 39.130 0.00 0.00 34.88 3.36
2641 2664 7.700322 TCTAATCAACGTATTTGCTCAGATC 57.300 36.000 0.00 0.00 34.88 2.75
2642 2665 7.766278 ACTTCTAATCAACGTATTTGCTCAGAT 59.234 33.333 0.00 0.00 34.88 2.90
2643 2666 7.097192 ACTTCTAATCAACGTATTTGCTCAGA 58.903 34.615 0.00 0.00 34.88 3.27
2644 2667 7.276658 AGACTTCTAATCAACGTATTTGCTCAG 59.723 37.037 0.00 0.00 34.88 3.35
2645 2668 7.097192 AGACTTCTAATCAACGTATTTGCTCA 58.903 34.615 0.00 0.00 34.88 4.26
2646 2669 7.489757 AGAGACTTCTAATCAACGTATTTGCTC 59.510 37.037 0.00 0.00 34.88 4.26
2647 2670 7.324178 AGAGACTTCTAATCAACGTATTTGCT 58.676 34.615 0.00 0.00 34.88 3.91
2648 2671 7.275779 TGAGAGACTTCTAATCAACGTATTTGC 59.724 37.037 0.00 0.00 32.27 3.68
2649 2672 8.689251 TGAGAGACTTCTAATCAACGTATTTG 57.311 34.615 0.00 0.00 32.53 2.32
2650 2673 9.877178 AATGAGAGACTTCTAATCAACGTATTT 57.123 29.630 0.00 0.00 32.53 1.40
2651 2674 9.877178 AAATGAGAGACTTCTAATCAACGTATT 57.123 29.630 0.00 0.00 32.53 1.89
2652 2675 9.877178 AAAATGAGAGACTTCTAATCAACGTAT 57.123 29.630 0.00 0.00 32.53 3.06
2653 2676 9.355215 GAAAATGAGAGACTTCTAATCAACGTA 57.645 33.333 0.00 0.00 32.53 3.57
2654 2677 7.872993 TGAAAATGAGAGACTTCTAATCAACGT 59.127 33.333 0.00 0.00 32.53 3.99
2655 2678 8.244494 TGAAAATGAGAGACTTCTAATCAACG 57.756 34.615 0.00 0.00 32.53 4.10
2671 5362 5.990120 AATCAACCTTCCCTGAAAATGAG 57.010 39.130 0.00 0.00 0.00 2.90
2674 5365 7.241628 ACTTCTAATCAACCTTCCCTGAAAAT 58.758 34.615 0.00 0.00 0.00 1.82
2720 5411 7.254137 TGACGAAAAATGAACAACAAAGATGA 58.746 30.769 0.00 0.00 0.00 2.92
2724 5415 7.222611 AGGAATGACGAAAAATGAACAACAAAG 59.777 33.333 0.00 0.00 0.00 2.77
2771 5462 2.035632 CAAGTGGGTAAAGGCCAACAA 58.964 47.619 5.01 0.00 34.89 2.83
2776 5467 0.611062 GGGACAAGTGGGTAAAGGCC 60.611 60.000 0.00 0.00 0.00 5.19
2850 5541 2.204136 AGGTGGGGCAGTGGATGA 60.204 61.111 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.