Multiple sequence alignment - TraesCS6A01G301300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G301300 chr6A 100.000 3387 0 0 1 3387 534799991 534796605 0.000000e+00 6255.0
1 TraesCS6A01G301300 chr6D 94.691 1601 67 10 1010 2605 388152952 388151365 0.000000e+00 2470.0
2 TraesCS6A01G301300 chr6D 84.111 1007 109 26 24 1003 388153977 388152995 0.000000e+00 926.0
3 TraesCS6A01G301300 chr6D 84.291 261 23 9 2608 2855 388151441 388151186 4.370000e-59 239.0
4 TraesCS6A01G301300 chr6B 93.882 1520 87 6 1010 2527 579888163 579886648 0.000000e+00 2287.0
5 TraesCS6A01G301300 chr6B 80.916 655 92 18 2605 3237 579885315 579884672 1.410000e-133 486.0
6 TraesCS6A01G301300 chr6B 84.711 484 50 17 4 486 579923700 579923240 2.380000e-126 462.0
7 TraesCS6A01G301300 chr6B 80.172 348 47 17 482 823 579888850 579888519 1.210000e-59 241.0
8 TraesCS6A01G301300 chr6B 91.818 110 7 2 895 1003 579888306 579888198 5.850000e-33 152.0
9 TraesCS6A01G301300 chr6B 75.519 241 50 8 3109 3346 309681755 309681521 3.570000e-20 110.0
10 TraesCS6A01G301300 chr2D 90.916 1387 104 12 1018 2391 57259168 57257791 0.000000e+00 1844.0
11 TraesCS6A01G301300 chr2D 84.164 1124 160 9 1195 2300 538272327 538271204 0.000000e+00 1074.0
12 TraesCS6A01G301300 chr2D 88.636 352 22 6 1282 1633 57192654 57192321 2.430000e-111 412.0
13 TraesCS6A01G301300 chr2D 79.200 125 20 5 2735 2855 57167359 57167237 7.790000e-12 82.4
14 TraesCS6A01G301300 chr7B 87.259 1193 134 13 1162 2345 720537898 720536715 0.000000e+00 1345.0
15 TraesCS6A01G301300 chr7B 71.667 360 83 18 3034 3385 732093344 732093692 7.790000e-12 82.4
16 TraesCS6A01G301300 chr7B 72.313 307 66 18 3087 3385 731969955 731970250 1.010000e-10 78.7
17 TraesCS6A01G301300 chr7B 85.135 74 9 2 3313 3385 732032188 732032260 1.300000e-09 75.0
18 TraesCS6A01G301300 chrUn 89.593 1057 102 5 1296 2345 361327630 361326575 0.000000e+00 1336.0
19 TraesCS6A01G301300 chrUn 71.667 360 83 18 3034 3385 383583658 383584006 7.790000e-12 82.4
20 TraesCS6A01G301300 chrUn 72.188 320 70 18 3074 3385 88435842 88436150 2.800000e-11 80.5
21 TraesCS6A01G301300 chrUn 71.389 360 84 18 3034 3385 245424962 245425310 3.620000e-10 76.8
22 TraesCS6A01G301300 chrUn 71.389 360 84 18 3034 3385 292559525 292559873 3.620000e-10 76.8
23 TraesCS6A01G301300 chrUn 85.135 74 9 2 3313 3385 160328073 160328145 1.300000e-09 75.0
24 TraesCS6A01G301300 chr2A 83.854 1121 163 11 1195 2300 680502249 680501132 0.000000e+00 1051.0
25 TraesCS6A01G301300 chr2A 91.667 600 50 0 1457 2056 58398885 58398286 0.000000e+00 832.0
26 TraesCS6A01G301300 chr2A 75.889 253 52 7 3072 3320 42792695 42792942 1.650000e-23 121.0
27 TraesCS6A01G301300 chr2A 85.294 102 13 2 2763 2863 58395701 58395601 1.660000e-18 104.0
28 TraesCS6A01G301300 chr2B 83.190 1166 165 19 1164 2300 641075871 641074708 0.000000e+00 1038.0
29 TraesCS6A01G301300 chr2B 87.338 616 63 3 1775 2389 90556540 90555939 0.000000e+00 691.0
30 TraesCS6A01G301300 chr5B 80.088 226 35 7 3101 3319 592312975 592312753 3.500000e-35 159.0
31 TraesCS6A01G301300 chr5B 82.432 74 9 4 3313 3384 34549021 34548950 1.010000e-05 62.1
32 TraesCS6A01G301300 chr3D 79.147 211 39 5 3101 3308 421321238 421321030 1.270000e-29 141.0
33 TraesCS6A01G301300 chr7A 77.193 228 43 8 3096 3318 442966870 442966647 1.280000e-24 124.0
34 TraesCS6A01G301300 chr4A 76.016 246 54 5 3076 3318 616660946 616661189 4.590000e-24 122.0
35 TraesCS6A01G301300 chr7D 94.286 35 2 0 2496 2530 311187447 311187413 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G301300 chr6A 534796605 534799991 3386 True 6255.000000 6255 100.000000 1 3387 1 chr6A.!!$R1 3386
1 TraesCS6A01G301300 chr6D 388151186 388153977 2791 True 1211.666667 2470 87.697667 24 2855 3 chr6D.!!$R1 2831
2 TraesCS6A01G301300 chr6B 579884672 579888850 4178 True 791.500000 2287 86.697000 482 3237 4 chr6B.!!$R3 2755
3 TraesCS6A01G301300 chr2D 57257791 57259168 1377 True 1844.000000 1844 90.916000 1018 2391 1 chr2D.!!$R3 1373
4 TraesCS6A01G301300 chr2D 538271204 538272327 1123 True 1074.000000 1074 84.164000 1195 2300 1 chr2D.!!$R4 1105
5 TraesCS6A01G301300 chr7B 720536715 720537898 1183 True 1345.000000 1345 87.259000 1162 2345 1 chr7B.!!$R1 1183
6 TraesCS6A01G301300 chrUn 361326575 361327630 1055 True 1336.000000 1336 89.593000 1296 2345 1 chrUn.!!$R1 1049
7 TraesCS6A01G301300 chr2A 680501132 680502249 1117 True 1051.000000 1051 83.854000 1195 2300 1 chr2A.!!$R1 1105
8 TraesCS6A01G301300 chr2A 58395601 58398885 3284 True 468.000000 832 88.480500 1457 2863 2 chr2A.!!$R2 1406
9 TraesCS6A01G301300 chr2B 641074708 641075871 1163 True 1038.000000 1038 83.190000 1164 2300 1 chr2B.!!$R2 1136
10 TraesCS6A01G301300 chr2B 90555939 90556540 601 True 691.000000 691 87.338000 1775 2389 1 chr2B.!!$R1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 669 0.179081 ACGCGAGAATAAGGAAGGGC 60.179 55.0 15.93 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2621 6337 0.099613 TTTTGCGACGTGTGCATTGT 59.9 45.0 12.34 0.0 42.84 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.051879 CGATCCATACGATGTTCGCT 57.948 50.000 0.00 0.00 45.12 4.93
20 21 1.979469 CGATCCATACGATGTTCGCTC 59.021 52.381 0.00 0.00 45.12 5.03
21 22 2.350868 CGATCCATACGATGTTCGCTCT 60.351 50.000 0.00 0.00 45.12 4.09
22 23 3.120304 CGATCCATACGATGTTCGCTCTA 60.120 47.826 0.00 0.00 45.12 2.43
31 32 8.916654 CATACGATGTTCGCTCTAAAATTCTAT 58.083 33.333 0.00 0.00 45.12 1.98
60 61 6.256321 TCTGACGTTAGTGTTTTAGTGTTTCC 59.744 38.462 7.27 0.00 0.00 3.13
62 63 6.594937 TGACGTTAGTGTTTTAGTGTTTCCTT 59.405 34.615 0.00 0.00 0.00 3.36
85 86 2.123248 TTGCGTTGCCCAGATCCTCA 62.123 55.000 0.00 0.00 0.00 3.86
91 92 1.144936 GCCCAGATCCTCAACCTCG 59.855 63.158 0.00 0.00 0.00 4.63
108 109 4.200874 ACCTCGTCAAATTTTACACCACA 58.799 39.130 3.57 0.00 0.00 4.17
115 116 6.592166 GTCAAATTTTACACCACATGCATTG 58.408 36.000 0.00 0.00 0.00 2.82
119 120 1.447945 TACACCACATGCATTGTCCG 58.552 50.000 5.04 0.00 36.00 4.79
135 136 2.427245 CCGCCTCCCTCGATCACTT 61.427 63.158 0.00 0.00 0.00 3.16
149 150 6.203723 CCTCGATCACTTGAATTCCTAAATCC 59.796 42.308 2.27 0.00 0.00 3.01
186 187 2.304751 TCTTTCGGCGATCCCTAAAC 57.695 50.000 11.76 0.00 0.00 2.01
189 190 2.279918 CGGCGATCCCTAAACCGG 60.280 66.667 0.00 0.00 40.18 5.28
192 193 1.594564 GCGATCCCTAAACCGGCTC 60.595 63.158 0.00 0.00 0.00 4.70
222 223 1.228675 CCAAAGCCCAGCACCTTCT 60.229 57.895 0.00 0.00 0.00 2.85
255 256 1.147817 AGCCCTTCCCAAACTGTTCAT 59.852 47.619 0.00 0.00 0.00 2.57
260 261 4.262164 CCCTTCCCAAACTGTTCATCTTTG 60.262 45.833 0.00 0.00 0.00 2.77
275 276 6.139679 TCATCTTTGATAGGGGTCTTTGTT 57.860 37.500 0.00 0.00 0.00 2.83
290 291 4.676924 GTCTTTGTTGCTTATCACTTGCAC 59.323 41.667 0.00 0.00 36.37 4.57
293 294 6.430925 TCTTTGTTGCTTATCACTTGCACTAT 59.569 34.615 0.00 0.00 36.37 2.12
294 295 6.573664 TTGTTGCTTATCACTTGCACTATT 57.426 33.333 0.00 0.00 36.37 1.73
295 296 7.680442 TTGTTGCTTATCACTTGCACTATTA 57.320 32.000 0.00 0.00 36.37 0.98
296 297 7.307493 TGTTGCTTATCACTTGCACTATTAG 57.693 36.000 0.00 0.00 36.37 1.73
297 298 6.878923 TGTTGCTTATCACTTGCACTATTAGT 59.121 34.615 0.00 0.00 36.37 2.24
298 299 8.038351 TGTTGCTTATCACTTGCACTATTAGTA 58.962 33.333 0.00 0.00 36.37 1.82
299 300 8.879759 GTTGCTTATCACTTGCACTATTAGTAA 58.120 33.333 0.00 0.00 36.37 2.24
300 301 9.613428 TTGCTTATCACTTGCACTATTAGTAAT 57.387 29.630 0.17 0.17 36.37 1.89
353 362 3.314357 AGTTTGACTTTCGGTTTAGCCAC 59.686 43.478 0.00 0.00 36.97 5.01
360 369 3.122971 GGTTTAGCCACCGCGTCC 61.123 66.667 4.92 0.00 41.18 4.79
369 378 2.666862 ACCGCGTCCGCATTTCAA 60.667 55.556 12.58 0.00 42.06 2.69
379 388 4.492570 CGTCCGCATTTCAATGTAGACTTC 60.493 45.833 15.86 0.00 37.89 3.01
398 407 1.757118 TCGGCAGAAACCTGGAGATAG 59.243 52.381 0.00 0.00 32.40 2.08
408 417 2.091278 ACCTGGAGATAGGATCCACGAA 60.091 50.000 15.82 0.00 41.96 3.85
416 425 4.524714 AGATAGGATCCACGAACATGGTAG 59.475 45.833 15.82 0.00 40.95 3.18
417 426 2.747177 AGGATCCACGAACATGGTAGA 58.253 47.619 15.82 0.00 40.95 2.59
418 427 3.309296 AGGATCCACGAACATGGTAGAT 58.691 45.455 15.82 0.00 40.95 1.98
419 428 3.322254 AGGATCCACGAACATGGTAGATC 59.678 47.826 15.82 1.21 40.95 2.75
420 429 3.555168 GGATCCACGAACATGGTAGATCC 60.555 52.174 6.95 13.05 42.55 3.36
421 430 1.407618 TCCACGAACATGGTAGATCCG 59.592 52.381 0.00 0.00 40.95 4.18
422 431 1.136305 CCACGAACATGGTAGATCCGT 59.864 52.381 0.00 0.00 39.52 4.69
423 432 2.359848 CCACGAACATGGTAGATCCGTA 59.640 50.000 0.00 0.00 39.52 4.02
424 433 3.550233 CCACGAACATGGTAGATCCGTAG 60.550 52.174 0.00 0.00 39.52 3.51
425 434 3.066342 CACGAACATGGTAGATCCGTAGT 59.934 47.826 0.00 0.00 39.52 2.73
435 444 2.334838 AGATCCGTAGTGCGTTGTTTC 58.665 47.619 0.00 0.00 39.32 2.78
437 446 0.248990 TCCGTAGTGCGTTGTTTCGT 60.249 50.000 0.00 0.00 39.32 3.85
440 449 0.932399 GTAGTGCGTTGTTTCGTGGT 59.068 50.000 0.00 0.00 0.00 4.16
454 463 1.599797 GTGGTTGTTGCGGTAGCCT 60.600 57.895 0.00 0.00 44.33 4.58
460 469 1.078426 GTTGCGGTAGCCTGTCCAT 60.078 57.895 0.00 0.00 44.33 3.41
513 522 1.136305 GCCGCCAGATACTCTGTAACA 59.864 52.381 3.65 0.00 42.80 2.41
523 532 6.972328 CAGATACTCTGTAACAGCTCTTTCTC 59.028 42.308 0.00 0.00 39.58 2.87
524 533 6.889722 AGATACTCTGTAACAGCTCTTTCTCT 59.110 38.462 0.00 0.00 0.00 3.10
525 534 5.385509 ACTCTGTAACAGCTCTTTCTCTC 57.614 43.478 0.00 0.00 0.00 3.20
526 535 4.219725 ACTCTGTAACAGCTCTTTCTCTCC 59.780 45.833 0.00 0.00 0.00 3.71
527 536 4.411927 TCTGTAACAGCTCTTTCTCTCCT 58.588 43.478 0.00 0.00 0.00 3.69
529 538 4.887748 TGTAACAGCTCTTTCTCTCCTTG 58.112 43.478 0.00 0.00 0.00 3.61
531 540 1.696336 ACAGCTCTTTCTCTCCTTGCA 59.304 47.619 0.00 0.00 0.00 4.08
532 541 2.105477 ACAGCTCTTTCTCTCCTTGCAA 59.895 45.455 0.00 0.00 0.00 4.08
540 551 5.704515 TCTTTCTCTCCTTGCAATCTTCTTG 59.295 40.000 0.00 0.00 0.00 3.02
567 578 0.730265 TCGACACGCAAAGCTTTTGT 59.270 45.000 9.53 11.88 0.00 2.83
568 579 0.839477 CGACACGCAAAGCTTTTGTG 59.161 50.000 27.60 27.60 36.64 3.33
576 587 3.242712 CGCAAAGCTTTTGTGTGGTAAAG 59.757 43.478 9.53 0.00 35.09 1.85
577 588 4.429108 GCAAAGCTTTTGTGTGGTAAAGA 58.571 39.130 9.53 0.00 34.11 2.52
602 615 1.025041 CCTAGAAATTTCGCCTGGCC 58.975 55.000 14.12 0.00 0.00 5.36
604 617 0.250793 TAGAAATTTCGCCTGGCCGA 59.749 50.000 14.12 11.01 35.09 5.54
605 618 0.608035 AGAAATTTCGCCTGGCCGAA 60.608 50.000 14.12 16.32 44.55 4.30
639 652 4.970003 GTCTTGACCAATTCTTCAAACACG 59.030 41.667 1.03 0.00 31.41 4.49
640 653 3.347958 TGACCAATTCTTCAAACACGC 57.652 42.857 0.00 0.00 0.00 5.34
644 657 2.223144 CCAATTCTTCAAACACGCGAGA 59.777 45.455 15.93 0.00 0.00 4.04
650 663 3.678072 TCTTCAAACACGCGAGAATAAGG 59.322 43.478 15.93 0.00 0.00 2.69
654 667 2.295253 ACACGCGAGAATAAGGAAGG 57.705 50.000 15.93 0.00 0.00 3.46
656 669 0.179081 ACGCGAGAATAAGGAAGGGC 60.179 55.000 15.93 0.00 0.00 5.19
678 691 1.134694 GGTTTTGCCGCGTCATCTC 59.865 57.895 4.92 0.00 0.00 2.75
686 699 1.429825 CGCGTCATCTCGACCTTCT 59.570 57.895 0.00 0.00 42.07 2.85
693 706 3.191581 GTCATCTCGACCTTCTCTGTTCA 59.808 47.826 0.00 0.00 38.85 3.18
699 712 6.755206 TCTCGACCTTCTCTGTTCAAAATTA 58.245 36.000 0.00 0.00 0.00 1.40
701 714 6.285224 TCGACCTTCTCTGTTCAAAATTACA 58.715 36.000 0.00 0.00 0.00 2.41
702 715 6.202188 TCGACCTTCTCTGTTCAAAATTACAC 59.798 38.462 0.00 0.00 0.00 2.90
703 716 6.565999 CGACCTTCTCTGTTCAAAATTACACC 60.566 42.308 0.00 0.00 0.00 4.16
705 718 5.238650 CCTTCTCTGTTCAAAATTACACCGT 59.761 40.000 0.00 0.00 0.00 4.83
721 735 1.364626 CCGTGGAATCTGCAGCTGTC 61.365 60.000 16.64 8.39 0.00 3.51
753 767 2.649034 GTCCGTTCGAGCTGACCA 59.351 61.111 11.84 0.00 0.00 4.02
755 769 1.078759 GTCCGTTCGAGCTGACCATG 61.079 60.000 11.84 0.00 0.00 3.66
757 771 1.737735 CGTTCGAGCTGACCATGCA 60.738 57.895 0.00 0.00 0.00 3.96
805 820 1.142474 CCCGCGTTTACGTTCTTTCT 58.858 50.000 4.92 0.00 42.22 2.52
807 822 2.343544 CCCGCGTTTACGTTCTTTCTAG 59.656 50.000 4.92 0.00 42.22 2.43
809 824 2.982470 CGCGTTTACGTTCTTTCTAGGT 59.018 45.455 0.00 0.00 42.22 3.08
813 828 5.230936 GCGTTTACGTTCTTTCTAGGTATCC 59.769 44.000 0.00 0.00 42.22 2.59
815 830 7.031975 CGTTTACGTTCTTTCTAGGTATCCTT 58.968 38.462 0.00 0.00 32.85 3.36
823 838 2.029623 TCTAGGTATCCTTGCCGTGTC 58.970 52.381 0.00 0.00 34.61 3.67
824 839 1.754803 CTAGGTATCCTTGCCGTGTCA 59.245 52.381 0.00 0.00 34.61 3.58
827 842 2.156098 GGTATCCTTGCCGTGTCAAAA 58.844 47.619 0.00 0.00 0.00 2.44
829 844 1.981256 ATCCTTGCCGTGTCAAAAGT 58.019 45.000 0.00 0.00 0.00 2.66
830 845 1.757682 TCCTTGCCGTGTCAAAAGTT 58.242 45.000 0.00 0.00 0.00 2.66
833 848 2.159310 CCTTGCCGTGTCAAAAGTTTGA 60.159 45.455 2.32 2.32 44.31 2.69
886 908 3.842820 CCGCTTCTATGTCGATCATGAT 58.157 45.455 8.25 8.25 37.91 2.45
934 1090 3.018856 CCCATGTAAAGCTGCAGAATCA 58.981 45.455 20.43 8.81 0.00 2.57
946 1102 4.142315 GCTGCAGAATCATCCTTGCTTAAA 60.142 41.667 20.43 0.00 0.00 1.52
950 1106 6.015180 TGCAGAATCATCCTTGCTTAAACTTT 60.015 34.615 0.00 0.00 0.00 2.66
980 1139 0.704076 CCCATTTCTTCCCCCAGACA 59.296 55.000 0.00 0.00 0.00 3.41
998 1157 5.475719 CAGACAAGCAAACCAATTCATCAT 58.524 37.500 0.00 0.00 0.00 2.45
1003 1162 5.018539 AGCAAACCAATTCATCATCATGG 57.981 39.130 0.00 0.00 37.19 3.66
1004 1163 4.712829 AGCAAACCAATTCATCATCATGGA 59.287 37.500 0.00 0.00 35.16 3.41
1007 1166 6.866770 GCAAACCAATTCATCATCATGGATAG 59.133 38.462 0.00 0.00 35.16 2.08
1013 1208 7.201741 CCAATTCATCATCATGGATAGCTCATC 60.202 40.741 0.00 0.00 32.82 2.92
1054 1249 1.576421 GCCTCCAGCAACTTCAACG 59.424 57.895 0.00 0.00 42.97 4.10
1158 1357 4.425577 AACTCCGATTTTTGCATCTCAC 57.574 40.909 0.00 0.00 0.00 3.51
1401 1618 4.711949 CACCCCGCAGCAGCTCTT 62.712 66.667 0.00 0.00 39.10 2.85
2102 4465 0.179111 CGGCGAGCTAATGGAAGTCA 60.179 55.000 0.00 0.00 0.00 3.41
2116 4479 2.350522 GAAGTCATGGCGAGTTGTGAT 58.649 47.619 0.00 0.00 37.41 3.06
2347 4725 1.068741 GTGAACTCGGTGTCCACTTCT 59.931 52.381 0.00 0.00 0.00 2.85
2433 4812 2.569853 TCGATCTAAGCCCAAGGAAACA 59.430 45.455 0.00 0.00 0.00 2.83
2477 4856 5.470098 CGTAGAGCATAGGCATTGGTTAAAT 59.530 40.000 0.67 0.00 44.61 1.40
2514 4895 9.674068 AATTTCTCTCCCTCTGTTTCTAAATAC 57.326 33.333 0.00 0.00 0.00 1.89
2518 4899 8.826765 TCTCTCCCTCTGTTTCTAAATACAAAT 58.173 33.333 0.00 0.00 0.00 2.32
2520 4901 8.826765 TCTCCCTCTGTTTCTAAATACAAATCT 58.173 33.333 0.00 0.00 0.00 2.40
2545 6261 6.652205 TTTAGGGAGGGAGTAATTCACAAT 57.348 37.500 0.00 0.00 0.00 2.71
2546 6262 4.510167 AGGGAGGGAGTAATTCACAATG 57.490 45.455 0.00 0.00 0.00 2.82
2551 6267 3.758554 AGGGAGTAATTCACAATGCACAC 59.241 43.478 0.00 0.00 0.00 3.82
2554 6270 4.394795 GAGTAATTCACAATGCACACGTC 58.605 43.478 0.00 0.00 0.00 4.34
2555 6271 2.704725 AATTCACAATGCACACGTCC 57.295 45.000 0.00 0.00 0.00 4.79
2557 6273 0.464554 TTCACAATGCACACGTCCCA 60.465 50.000 0.00 0.00 0.00 4.37
2558 6274 0.464554 TCACAATGCACACGTCCCAA 60.465 50.000 0.00 0.00 0.00 4.12
2559 6275 0.383590 CACAATGCACACGTCCCAAA 59.616 50.000 0.00 0.00 0.00 3.28
2560 6276 1.107114 ACAATGCACACGTCCCAAAA 58.893 45.000 0.00 0.00 0.00 2.44
2561 6277 1.202359 ACAATGCACACGTCCCAAAAC 60.202 47.619 0.00 0.00 0.00 2.43
2562 6278 1.107114 AATGCACACGTCCCAAAACA 58.893 45.000 0.00 0.00 0.00 2.83
2563 6279 1.327303 ATGCACACGTCCCAAAACAT 58.673 45.000 0.00 0.00 0.00 2.71
2564 6280 0.665835 TGCACACGTCCCAAAACATC 59.334 50.000 0.00 0.00 0.00 3.06
2565 6281 0.951558 GCACACGTCCCAAAACATCT 59.048 50.000 0.00 0.00 0.00 2.90
2566 6282 2.147958 GCACACGTCCCAAAACATCTA 58.852 47.619 0.00 0.00 0.00 1.98
2567 6283 2.095919 GCACACGTCCCAAAACATCTAC 60.096 50.000 0.00 0.00 0.00 2.59
2568 6284 3.399330 CACACGTCCCAAAACATCTACT 58.601 45.455 0.00 0.00 0.00 2.57
2569 6285 4.562082 CACACGTCCCAAAACATCTACTA 58.438 43.478 0.00 0.00 0.00 1.82
2570 6286 4.387862 CACACGTCCCAAAACATCTACTAC 59.612 45.833 0.00 0.00 0.00 2.73
2571 6287 4.282703 ACACGTCCCAAAACATCTACTACT 59.717 41.667 0.00 0.00 0.00 2.57
2572 6288 5.477984 ACACGTCCCAAAACATCTACTACTA 59.522 40.000 0.00 0.00 0.00 1.82
2573 6289 5.803967 CACGTCCCAAAACATCTACTACTAC 59.196 44.000 0.00 0.00 0.00 2.73
2574 6290 5.713861 ACGTCCCAAAACATCTACTACTACT 59.286 40.000 0.00 0.00 0.00 2.57
2575 6291 6.210185 ACGTCCCAAAACATCTACTACTACTT 59.790 38.462 0.00 0.00 0.00 2.24
2576 6292 7.095270 CGTCCCAAAACATCTACTACTACTTT 58.905 38.462 0.00 0.00 0.00 2.66
2577 6293 7.063074 CGTCCCAAAACATCTACTACTACTTTG 59.937 40.741 0.00 0.00 0.00 2.77
2578 6294 7.876582 GTCCCAAAACATCTACTACTACTTTGT 59.123 37.037 0.00 0.00 0.00 2.83
2579 6295 8.434392 TCCCAAAACATCTACTACTACTTTGTT 58.566 33.333 0.00 0.00 0.00 2.83
2580 6296 8.504005 CCCAAAACATCTACTACTACTTTGTTG 58.496 37.037 0.00 0.00 0.00 3.33
2581 6297 9.052759 CCAAAACATCTACTACTACTTTGTTGT 57.947 33.333 0.00 0.00 0.00 3.32
2583 6299 9.826574 AAAACATCTACTACTACTTTGTTGTCA 57.173 29.630 0.00 0.00 0.00 3.58
2584 6300 9.998106 AAACATCTACTACTACTTTGTTGTCAT 57.002 29.630 0.00 0.00 0.00 3.06
2585 6301 9.998106 AACATCTACTACTACTTTGTTGTCATT 57.002 29.630 0.00 0.00 0.00 2.57
2586 6302 9.640963 ACATCTACTACTACTTTGTTGTCATTC 57.359 33.333 0.00 0.00 0.00 2.67
2587 6303 8.799091 CATCTACTACTACTTTGTTGTCATTCG 58.201 37.037 0.00 0.00 0.00 3.34
2588 6304 5.840940 ACTACTACTTTGTTGTCATTCGC 57.159 39.130 0.00 0.00 0.00 4.70
2589 6305 5.539048 ACTACTACTTTGTTGTCATTCGCT 58.461 37.500 0.00 0.00 0.00 4.93
2590 6306 4.732285 ACTACTTTGTTGTCATTCGCTG 57.268 40.909 0.00 0.00 0.00 5.18
2591 6307 3.498397 ACTACTTTGTTGTCATTCGCTGG 59.502 43.478 0.00 0.00 0.00 4.85
2592 6308 1.001378 ACTTTGTTGTCATTCGCTGGC 60.001 47.619 0.00 0.00 0.00 4.85
2593 6309 1.001487 CTTTGTTGTCATTCGCTGGCA 60.001 47.619 0.00 0.00 37.81 4.92
2594 6310 1.028130 TTGTTGTCATTCGCTGGCAA 58.972 45.000 1.36 1.36 46.95 4.52
2596 6312 2.712984 TTGTCATTCGCTGGCAACA 58.287 47.368 1.36 0.00 44.36 3.33
2608 6324 3.191182 GGCAACAATGGAGGTAGGG 57.809 57.895 0.00 0.00 0.00 3.53
2609 6325 0.623723 GGCAACAATGGAGGTAGGGA 59.376 55.000 0.00 0.00 0.00 4.20
2610 6326 1.408822 GGCAACAATGGAGGTAGGGAG 60.409 57.143 0.00 0.00 0.00 4.30
2611 6327 1.408822 GCAACAATGGAGGTAGGGAGG 60.409 57.143 0.00 0.00 0.00 4.30
2612 6328 2.196595 CAACAATGGAGGTAGGGAGGA 58.803 52.381 0.00 0.00 0.00 3.71
2613 6329 2.576191 CAACAATGGAGGTAGGGAGGAA 59.424 50.000 0.00 0.00 0.00 3.36
2614 6330 2.482494 ACAATGGAGGTAGGGAGGAAG 58.518 52.381 0.00 0.00 0.00 3.46
2615 6331 2.225908 ACAATGGAGGTAGGGAGGAAGT 60.226 50.000 0.00 0.00 0.00 3.01
2616 6332 3.013648 ACAATGGAGGTAGGGAGGAAGTA 59.986 47.826 0.00 0.00 0.00 2.24
2617 6333 4.037927 CAATGGAGGTAGGGAGGAAGTAA 58.962 47.826 0.00 0.00 0.00 2.24
2618 6334 4.578149 ATGGAGGTAGGGAGGAAGTAAT 57.422 45.455 0.00 0.00 0.00 1.89
2619 6335 4.363546 TGGAGGTAGGGAGGAAGTAATT 57.636 45.455 0.00 0.00 0.00 1.40
2620 6336 4.296056 TGGAGGTAGGGAGGAAGTAATTC 58.704 47.826 0.00 0.00 0.00 2.17
2621 6337 4.265124 TGGAGGTAGGGAGGAAGTAATTCA 60.265 45.833 5.15 0.00 0.00 2.57
2622 6338 4.101274 GGAGGTAGGGAGGAAGTAATTCAC 59.899 50.000 5.15 0.00 0.00 3.18
2623 6339 4.695606 AGGTAGGGAGGAAGTAATTCACA 58.304 43.478 5.15 0.00 0.00 3.58
2624 6340 5.098663 AGGTAGGGAGGAAGTAATTCACAA 58.901 41.667 5.15 0.00 0.00 3.33
2625 6341 5.731678 AGGTAGGGAGGAAGTAATTCACAAT 59.268 40.000 5.15 0.00 0.00 2.71
2626 6342 5.823045 GGTAGGGAGGAAGTAATTCACAATG 59.177 44.000 5.15 0.00 0.00 2.82
2627 6343 4.273318 AGGGAGGAAGTAATTCACAATGC 58.727 43.478 5.15 0.00 0.00 3.56
2628 6344 4.016444 GGGAGGAAGTAATTCACAATGCA 58.984 43.478 5.15 0.00 0.00 3.96
2629 6345 4.142381 GGGAGGAAGTAATTCACAATGCAC 60.142 45.833 5.15 0.00 0.00 4.57
2630 6346 4.458989 GGAGGAAGTAATTCACAATGCACA 59.541 41.667 5.15 0.00 0.00 4.57
2631 6347 5.376854 AGGAAGTAATTCACAATGCACAC 57.623 39.130 5.15 0.00 0.00 3.82
2632 6348 4.083324 AGGAAGTAATTCACAATGCACACG 60.083 41.667 5.15 0.00 0.00 4.49
2633 6349 4.320202 GGAAGTAATTCACAATGCACACGT 60.320 41.667 5.15 0.00 0.00 4.49
2634 6350 4.404507 AGTAATTCACAATGCACACGTC 57.595 40.909 0.00 0.00 0.00 4.34
2635 6351 2.314561 AATTCACAATGCACACGTCG 57.685 45.000 0.00 0.00 0.00 5.12
2636 6352 0.110238 ATTCACAATGCACACGTCGC 60.110 50.000 0.00 0.00 0.00 5.19
2637 6353 1.432270 TTCACAATGCACACGTCGCA 61.432 50.000 11.31 11.31 44.94 5.10
2646 6362 1.858000 GCACACGTCGCAAAAACATCA 60.858 47.619 1.64 0.00 0.00 3.07
2660 6376 6.457257 GCAAAAACATCATCTGCTTTGTTGTT 60.457 34.615 0.00 5.36 38.17 2.83
2664 6380 6.199937 ACATCATCTGCTTTGTTGTTATCC 57.800 37.500 0.00 0.00 0.00 2.59
2678 6394 2.169561 TGTTATCCGCTGCCTACAATGA 59.830 45.455 0.00 0.00 0.00 2.57
2692 6408 5.623824 GCCTACAATGAAGGTTTCGTCTCTA 60.624 44.000 0.00 0.00 36.43 2.43
2694 6410 5.209818 ACAATGAAGGTTTCGTCTCTACA 57.790 39.130 0.00 0.00 0.00 2.74
2714 6430 3.276857 CACTCTCATGCCAATGCTAAGT 58.723 45.455 0.00 0.00 38.71 2.24
2719 6435 3.553904 TCATGCCAATGCTAAGTATGCA 58.446 40.909 0.00 0.00 44.95 3.96
2730 6446 3.607775 GCTAAGTATGCATGCATGAACCG 60.608 47.826 37.43 24.10 37.82 4.44
2770 6518 2.518825 CTCCCTACCTAGCGCCGT 60.519 66.667 2.29 0.00 0.00 5.68
2818 6567 0.170561 CCCCGAGAACTCACACTACG 59.829 60.000 2.78 0.00 0.00 3.51
2858 6607 1.298014 CCCGCTTGCTTTCTCCTCT 59.702 57.895 0.00 0.00 0.00 3.69
2859 6608 1.023513 CCCGCTTGCTTTCTCCTCTG 61.024 60.000 0.00 0.00 0.00 3.35
2861 6610 0.673022 CGCTTGCTTTCTCCTCTGCT 60.673 55.000 0.00 0.00 0.00 4.24
2867 6616 0.605589 CTTTCTCCTCTGCTCACGGT 59.394 55.000 0.00 0.00 0.00 4.83
2885 6634 0.978667 GTTCCTCCTCACCTCTCCCC 60.979 65.000 0.00 0.00 0.00 4.81
2886 6635 1.452226 TTCCTCCTCACCTCTCCCCA 61.452 60.000 0.00 0.00 0.00 4.96
2888 6637 1.687493 CTCCTCACCTCTCCCCACC 60.687 68.421 0.00 0.00 0.00 4.61
2895 6649 0.919710 ACCTCTCCCCACCTATTTGC 59.080 55.000 0.00 0.00 0.00 3.68
2898 6652 2.579873 CTCTCCCCACCTATTTGCATG 58.420 52.381 0.00 0.00 0.00 4.06
2903 6657 3.461458 TCCCCACCTATTTGCATGTATCA 59.539 43.478 0.00 0.00 0.00 2.15
2909 6663 6.256321 CCACCTATTTGCATGTATCAAAAAGC 59.744 38.462 0.00 0.00 37.04 3.51
2911 6665 7.221452 CACCTATTTGCATGTATCAAAAAGCTC 59.779 37.037 0.00 0.00 37.04 4.09
2914 6668 5.963176 TTGCATGTATCAAAAAGCTCTCA 57.037 34.783 0.00 0.00 0.00 3.27
2936 6690 9.634021 TCTCATTGAGCTATATATAGATCGGTT 57.366 33.333 25.39 14.18 45.99 4.44
2955 6709 6.961576 TCGGTTTTTGTACAGTAATTGAAGG 58.038 36.000 0.00 0.00 0.00 3.46
2980 6735 7.494952 GGAAAAACTATTAGTGGCTACTACCAG 59.505 40.741 9.78 11.75 41.46 4.00
2983 6738 4.894114 ACTATTAGTGGCTACTACCAGGTG 59.106 45.833 9.78 0.74 41.46 4.00
2985 6740 1.558233 AGTGGCTACTACCAGGTGAC 58.442 55.000 0.00 0.00 41.46 3.67
2997 6752 1.135915 CCAGGTGACAGCTAGCTAGTG 59.864 57.143 18.86 18.83 0.00 2.74
2999 6754 3.017442 CAGGTGACAGCTAGCTAGTGTA 58.983 50.000 18.86 6.81 0.00 2.90
3000 6755 3.066064 CAGGTGACAGCTAGCTAGTGTAG 59.934 52.174 18.86 6.42 0.00 2.74
3008 6763 6.005198 ACAGCTAGCTAGTGTAGGGTTATAG 58.995 44.000 18.86 1.24 0.00 1.31
3035 6790 4.247380 GCCTCCTGCATCCTCCCG 62.247 72.222 0.00 0.00 40.77 5.14
3045 6800 3.038280 TGCATCCTCCCGAAAGAGATTA 58.962 45.455 0.00 0.00 35.82 1.75
3056 6811 4.585162 CCGAAAGAGATTAGGCTTCCTCTA 59.415 45.833 11.59 0.00 35.16 2.43
3061 6816 4.418863 AGAGATTAGGCTTCCTCTACCTCT 59.581 45.833 10.09 0.00 34.54 3.69
3062 6817 5.103258 AGAGATTAGGCTTCCTCTACCTCTT 60.103 44.000 10.09 0.00 34.54 2.85
3064 6819 2.632763 AGGCTTCCTCTACCTCTTGT 57.367 50.000 0.00 0.00 0.00 3.16
3067 6822 2.093106 GCTTCCTCTACCTCTTGTCGA 58.907 52.381 0.00 0.00 0.00 4.20
3069 6824 1.735386 TCCTCTACCTCTTGTCGACG 58.265 55.000 11.62 0.00 0.00 5.12
3072 6827 2.159544 CCTCTACCTCTTGTCGACGTTC 60.160 54.545 11.62 0.00 0.00 3.95
3075 6830 1.443872 CCTCTTGTCGACGTTCCCG 60.444 63.158 11.62 0.00 40.83 5.14
3077 6832 3.110178 CTTGTCGACGTTCCCGCC 61.110 66.667 11.62 0.00 37.70 6.13
3094 6849 1.579932 CCGGTCCGTATCATCTCCG 59.420 63.158 11.06 0.00 38.05 4.63
3098 6853 2.160205 GGTCCGTATCATCTCCGATGA 58.840 52.381 8.79 8.79 0.00 2.92
3099 6854 2.755655 GGTCCGTATCATCTCCGATGAT 59.244 50.000 19.59 19.59 41.25 2.45
3104 6859 5.586643 TCCGTATCATCTCCGATGATCTTAG 59.413 44.000 19.34 11.06 39.30 2.18
3106 6861 4.734398 ATCATCTCCGATGATCTTAGGC 57.266 45.455 12.30 0.00 33.86 3.93
3111 6866 3.509184 TCTCCGATGATCTTAGGCTCATG 59.491 47.826 0.00 0.00 32.36 3.07
3114 6869 2.301296 CGATGATCTTAGGCTCATGGGT 59.699 50.000 0.00 0.00 32.36 4.51
3116 6871 2.481441 TGATCTTAGGCTCATGGGTGT 58.519 47.619 0.00 0.00 0.00 4.16
3117 6872 2.171237 TGATCTTAGGCTCATGGGTGTG 59.829 50.000 0.00 0.00 0.00 3.82
3119 6874 1.078497 TTAGGCTCATGGGTGTGCG 60.078 57.895 0.00 0.00 43.83 5.34
3123 6878 2.747460 CTCATGGGTGTGCGGTGG 60.747 66.667 0.00 0.00 0.00 4.61
3171 6926 4.154195 GCTCCGTTTTTAGATGCTTCTTCA 59.846 41.667 7.51 0.00 33.17 3.02
3173 6928 6.627395 TCCGTTTTTAGATGCTTCTTCAAA 57.373 33.333 7.51 5.22 33.17 2.69
3183 6939 6.928520 AGATGCTTCTTCAAATTTGTTAGGG 58.071 36.000 17.47 12.50 0.00 3.53
3187 6943 8.012957 TGCTTCTTCAAATTTGTTAGGGTTTA 57.987 30.769 17.47 0.00 0.00 2.01
3197 6953 8.972458 AATTTGTTAGGGTTTATGTTTTGCTT 57.028 26.923 0.00 0.00 0.00 3.91
3199 6955 9.705290 ATTTGTTAGGGTTTATGTTTTGCTTAG 57.295 29.630 0.00 0.00 0.00 2.18
3203 6959 6.987403 AGGGTTTATGTTTTGCTTAGGAAA 57.013 33.333 0.00 0.00 0.00 3.13
3206 6962 6.144886 GGGTTTATGTTTTGCTTAGGAAAACG 59.855 38.462 27.73 0.00 43.35 3.60
3213 6969 3.374220 TGCTTAGGAAAACGAGACGAA 57.626 42.857 0.00 0.00 0.00 3.85
3215 6971 2.666994 GCTTAGGAAAACGAGACGAAGG 59.333 50.000 0.00 0.00 0.00 3.46
3217 6973 0.391597 AGGAAAACGAGACGAAGGCA 59.608 50.000 0.00 0.00 0.00 4.75
3225 6981 1.000486 AGACGAAGGCAGCTCCCTA 60.000 57.895 0.00 0.00 33.97 3.53
3227 6983 0.179097 GACGAAGGCAGCTCCCTAAG 60.179 60.000 0.00 0.00 33.97 2.18
3228 6984 0.614979 ACGAAGGCAGCTCCCTAAGA 60.615 55.000 0.00 0.00 33.97 2.10
3229 6985 0.755686 CGAAGGCAGCTCCCTAAGAT 59.244 55.000 0.00 0.00 33.97 2.40
3230 6986 1.539929 CGAAGGCAGCTCCCTAAGATG 60.540 57.143 0.00 0.00 44.46 2.90
3232 6988 0.030705 AGGCAGCTCCCTAAGATGGA 60.031 55.000 0.00 0.00 41.84 3.41
3234 6990 1.423161 GGCAGCTCCCTAAGATGGAAT 59.577 52.381 0.00 0.00 41.84 3.01
3235 6991 2.502295 GCAGCTCCCTAAGATGGAATG 58.498 52.381 0.00 0.00 41.84 2.67
3236 6992 2.105477 GCAGCTCCCTAAGATGGAATGA 59.895 50.000 0.00 0.00 41.84 2.57
3237 6993 3.806507 GCAGCTCCCTAAGATGGAATGAG 60.807 52.174 0.00 0.00 41.84 2.90
3238 6994 2.978278 AGCTCCCTAAGATGGAATGAGG 59.022 50.000 0.00 0.00 0.00 3.86
3239 6995 2.708325 GCTCCCTAAGATGGAATGAGGT 59.292 50.000 0.00 0.00 0.00 3.85
3240 6996 3.137360 GCTCCCTAAGATGGAATGAGGTT 59.863 47.826 0.00 0.00 0.00 3.50
3241 6997 4.745172 GCTCCCTAAGATGGAATGAGGTTC 60.745 50.000 0.00 0.00 36.04 3.62
3242 6998 4.635473 TCCCTAAGATGGAATGAGGTTCT 58.365 43.478 0.00 0.00 37.01 3.01
3243 6999 5.039645 TCCCTAAGATGGAATGAGGTTCTT 58.960 41.667 0.00 0.00 37.01 2.52
3244 7000 5.131142 TCCCTAAGATGGAATGAGGTTCTTC 59.869 44.000 0.00 0.00 37.01 2.87
3245 7001 5.372373 CCTAAGATGGAATGAGGTTCTTCC 58.628 45.833 0.00 0.00 41.13 3.46
3246 7002 3.941704 AGATGGAATGAGGTTCTTCCC 57.058 47.619 0.00 0.00 40.22 3.97
3247 7003 2.171448 AGATGGAATGAGGTTCTTCCCG 59.829 50.000 0.00 0.00 40.22 5.14
3248 7004 0.035439 TGGAATGAGGTTCTTCCCGC 60.035 55.000 0.00 0.00 40.22 6.13
3249 7005 0.748367 GGAATGAGGTTCTTCCCGCC 60.748 60.000 0.00 0.00 35.83 6.13
3250 7006 0.253327 GAATGAGGTTCTTCCCGCCT 59.747 55.000 0.00 0.00 36.75 5.52
3251 7007 1.485066 GAATGAGGTTCTTCCCGCCTA 59.515 52.381 0.00 0.00 36.75 3.93
3252 7008 1.123928 ATGAGGTTCTTCCCGCCTAG 58.876 55.000 0.00 0.00 36.75 3.02
3253 7009 1.144276 GAGGTTCTTCCCGCCTAGC 59.856 63.158 0.00 0.00 36.75 3.42
3254 7010 2.189784 GGTTCTTCCCGCCTAGCC 59.810 66.667 0.00 0.00 0.00 3.93
3255 7011 2.368011 GGTTCTTCCCGCCTAGCCT 61.368 63.158 0.00 0.00 0.00 4.58
3256 7012 1.144276 GTTCTTCCCGCCTAGCCTC 59.856 63.158 0.00 0.00 0.00 4.70
3257 7013 2.064581 TTCTTCCCGCCTAGCCTCC 61.065 63.158 0.00 0.00 0.00 4.30
3258 7014 3.917760 CTTCCCGCCTAGCCTCCG 61.918 72.222 0.00 0.00 0.00 4.63
3259 7015 4.772231 TTCCCGCCTAGCCTCCGT 62.772 66.667 0.00 0.00 0.00 4.69
3260 7016 4.772231 TCCCGCCTAGCCTCCGTT 62.772 66.667 0.00 0.00 0.00 4.44
3261 7017 3.782443 CCCGCCTAGCCTCCGTTT 61.782 66.667 0.00 0.00 0.00 3.60
3262 7018 2.202892 CCGCCTAGCCTCCGTTTC 60.203 66.667 0.00 0.00 0.00 2.78
3263 7019 2.577059 CGCCTAGCCTCCGTTTCA 59.423 61.111 0.00 0.00 0.00 2.69
3264 7020 1.519455 CGCCTAGCCTCCGTTTCAG 60.519 63.158 0.00 0.00 0.00 3.02
3265 7021 1.597461 GCCTAGCCTCCGTTTCAGT 59.403 57.895 0.00 0.00 0.00 3.41
3266 7022 0.741221 GCCTAGCCTCCGTTTCAGTG 60.741 60.000 0.00 0.00 0.00 3.66
3267 7023 0.108138 CCTAGCCTCCGTTTCAGTGG 60.108 60.000 0.00 0.00 0.00 4.00
3268 7024 0.608640 CTAGCCTCCGTTTCAGTGGT 59.391 55.000 0.00 0.00 0.00 4.16
3269 7025 0.320374 TAGCCTCCGTTTCAGTGGTG 59.680 55.000 0.00 0.00 0.00 4.17
3270 7026 1.966451 GCCTCCGTTTCAGTGGTGG 60.966 63.158 0.00 0.00 40.97 4.61
3271 7027 1.302511 CCTCCGTTTCAGTGGTGGG 60.303 63.158 0.00 0.00 35.67 4.61
3272 7028 1.450211 CTCCGTTTCAGTGGTGGGT 59.550 57.895 0.00 0.00 0.00 4.51
3273 7029 0.602905 CTCCGTTTCAGTGGTGGGTC 60.603 60.000 0.00 0.00 0.00 4.46
3274 7030 1.052124 TCCGTTTCAGTGGTGGGTCT 61.052 55.000 0.00 0.00 0.00 3.85
3275 7031 0.682852 CCGTTTCAGTGGTGGGTCTA 59.317 55.000 0.00 0.00 0.00 2.59
3276 7032 1.337823 CCGTTTCAGTGGTGGGTCTAG 60.338 57.143 0.00 0.00 0.00 2.43
3277 7033 1.809684 GTTTCAGTGGTGGGTCTAGC 58.190 55.000 0.00 0.00 0.00 3.42
3278 7034 1.071699 GTTTCAGTGGTGGGTCTAGCA 59.928 52.381 0.00 0.00 0.00 3.49
3279 7035 1.656587 TTCAGTGGTGGGTCTAGCAT 58.343 50.000 0.00 0.00 0.00 3.79
3280 7036 1.656587 TCAGTGGTGGGTCTAGCATT 58.343 50.000 0.00 0.00 0.00 3.56
3281 7037 1.278985 TCAGTGGTGGGTCTAGCATTG 59.721 52.381 3.42 3.42 37.20 2.82
3282 7038 1.003580 CAGTGGTGGGTCTAGCATTGT 59.996 52.381 2.00 0.00 33.03 2.71
3283 7039 1.279271 AGTGGTGGGTCTAGCATTGTC 59.721 52.381 0.00 0.00 0.00 3.18
3284 7040 0.249120 TGGTGGGTCTAGCATTGTCG 59.751 55.000 0.00 0.00 0.00 4.35
3285 7041 0.462047 GGTGGGTCTAGCATTGTCGG 60.462 60.000 0.00 0.00 0.00 4.79
3286 7042 0.249398 GTGGGTCTAGCATTGTCGGT 59.751 55.000 0.00 0.00 0.00 4.69
3287 7043 0.249120 TGGGTCTAGCATTGTCGGTG 59.751 55.000 0.00 0.00 0.00 4.94
3288 7044 0.462047 GGGTCTAGCATTGTCGGTGG 60.462 60.000 0.00 0.00 0.00 4.61
3289 7045 0.462047 GGTCTAGCATTGTCGGTGGG 60.462 60.000 0.00 0.00 0.00 4.61
3290 7046 1.090052 GTCTAGCATTGTCGGTGGGC 61.090 60.000 0.00 0.00 0.00 5.36
3291 7047 1.078497 CTAGCATTGTCGGTGGGCA 60.078 57.895 0.00 0.00 0.00 5.36
3292 7048 0.464373 CTAGCATTGTCGGTGGGCAT 60.464 55.000 0.00 0.00 0.00 4.40
3293 7049 0.747644 TAGCATTGTCGGTGGGCATG 60.748 55.000 0.00 0.00 0.00 4.06
3294 7050 2.342650 GCATTGTCGGTGGGCATGT 61.343 57.895 0.00 0.00 0.00 3.21
3295 7051 1.507630 CATTGTCGGTGGGCATGTG 59.492 57.895 0.00 0.00 0.00 3.21
3296 7052 1.678635 ATTGTCGGTGGGCATGTGG 60.679 57.895 0.00 0.00 0.00 4.17
3297 7053 2.135903 ATTGTCGGTGGGCATGTGGA 62.136 55.000 0.00 0.00 0.00 4.02
3298 7054 2.436646 GTCGGTGGGCATGTGGAG 60.437 66.667 0.00 0.00 0.00 3.86
3299 7055 3.716195 TCGGTGGGCATGTGGAGG 61.716 66.667 0.00 0.00 0.00 4.30
3300 7056 4.033776 CGGTGGGCATGTGGAGGT 62.034 66.667 0.00 0.00 0.00 3.85
3301 7057 2.361610 GGTGGGCATGTGGAGGTG 60.362 66.667 0.00 0.00 0.00 4.00
3302 7058 2.436109 GTGGGCATGTGGAGGTGT 59.564 61.111 0.00 0.00 0.00 4.16
3303 7059 1.973281 GTGGGCATGTGGAGGTGTG 60.973 63.158 0.00 0.00 0.00 3.82
3304 7060 2.436109 GGGCATGTGGAGGTGTGT 59.564 61.111 0.00 0.00 0.00 3.72
3305 7061 1.675641 GGGCATGTGGAGGTGTGTC 60.676 63.158 0.00 0.00 0.00 3.67
3306 7062 1.376466 GGCATGTGGAGGTGTGTCT 59.624 57.895 0.00 0.00 0.00 3.41
3307 7063 0.674895 GGCATGTGGAGGTGTGTCTC 60.675 60.000 0.00 0.00 0.00 3.36
3308 7064 1.016130 GCATGTGGAGGTGTGTCTCG 61.016 60.000 0.00 0.00 34.74 4.04
3309 7065 0.390340 CATGTGGAGGTGTGTCTCGG 60.390 60.000 0.00 0.00 34.74 4.63
3310 7066 0.541998 ATGTGGAGGTGTGTCTCGGA 60.542 55.000 0.00 0.00 34.74 4.55
3311 7067 1.289380 GTGGAGGTGTGTCTCGGAC 59.711 63.158 0.00 0.00 34.74 4.79
3312 7068 2.265904 TGGAGGTGTGTCTCGGACG 61.266 63.158 0.59 0.00 34.95 4.79
3313 7069 2.567049 GAGGTGTGTCTCGGACGG 59.433 66.667 0.00 0.00 34.95 4.79
3314 7070 1.970114 GAGGTGTGTCTCGGACGGA 60.970 63.158 0.00 0.00 34.95 4.69
3315 7071 1.304217 AGGTGTGTCTCGGACGGAT 60.304 57.895 0.00 0.00 34.95 4.18
3316 7072 1.139095 GGTGTGTCTCGGACGGATC 59.861 63.158 0.00 0.00 34.95 3.36
3317 7073 1.313812 GGTGTGTCTCGGACGGATCT 61.314 60.000 0.00 0.00 34.95 2.75
3318 7074 0.179161 GTGTGTCTCGGACGGATCTG 60.179 60.000 0.00 0.00 34.95 2.90
3319 7075 1.226717 GTGTCTCGGACGGATCTGC 60.227 63.158 0.00 0.00 34.95 4.26
3320 7076 1.378646 TGTCTCGGACGGATCTGCT 60.379 57.895 0.00 0.00 34.95 4.24
3321 7077 1.357334 GTCTCGGACGGATCTGCTC 59.643 63.158 0.00 0.00 0.00 4.26
3322 7078 2.180862 TCTCGGACGGATCTGCTCG 61.181 63.158 0.00 6.13 0.00 5.03
3323 7079 3.187699 CTCGGACGGATCTGCTCGG 62.188 68.421 14.48 9.92 0.00 4.63
3324 7080 3.209812 CGGACGGATCTGCTCGGA 61.210 66.667 0.00 0.00 0.00 4.55
3325 7081 2.556459 CGGACGGATCTGCTCGGAT 61.556 63.158 0.00 0.00 0.00 4.18
3326 7082 1.742768 GGACGGATCTGCTCGGATT 59.257 57.895 0.00 0.00 0.00 3.01
3327 7083 0.959553 GGACGGATCTGCTCGGATTA 59.040 55.000 0.00 0.00 0.00 1.75
3328 7084 1.546476 GGACGGATCTGCTCGGATTAT 59.454 52.381 0.00 0.00 0.00 1.28
3329 7085 2.600731 GACGGATCTGCTCGGATTATG 58.399 52.381 0.00 0.00 0.00 1.90
3330 7086 1.964223 ACGGATCTGCTCGGATTATGT 59.036 47.619 0.00 0.00 0.00 2.29
3331 7087 2.365617 ACGGATCTGCTCGGATTATGTT 59.634 45.455 0.00 0.00 0.00 2.71
3332 7088 2.733552 CGGATCTGCTCGGATTATGTTG 59.266 50.000 0.00 0.00 0.00 3.33
3333 7089 3.733337 GGATCTGCTCGGATTATGTTGT 58.267 45.455 0.00 0.00 0.00 3.32
3334 7090 3.743396 GGATCTGCTCGGATTATGTTGTC 59.257 47.826 0.00 0.00 0.00 3.18
3335 7091 4.502259 GGATCTGCTCGGATTATGTTGTCT 60.502 45.833 0.00 0.00 0.00 3.41
3336 7092 4.471904 TCTGCTCGGATTATGTTGTCTT 57.528 40.909 0.00 0.00 0.00 3.01
3337 7093 4.832248 TCTGCTCGGATTATGTTGTCTTT 58.168 39.130 0.00 0.00 0.00 2.52
3338 7094 4.870426 TCTGCTCGGATTATGTTGTCTTTC 59.130 41.667 0.00 0.00 0.00 2.62
3339 7095 3.616821 TGCTCGGATTATGTTGTCTTTCG 59.383 43.478 0.00 0.00 0.00 3.46
3340 7096 3.617263 GCTCGGATTATGTTGTCTTTCGT 59.383 43.478 0.00 0.00 0.00 3.85
3341 7097 4.259850 GCTCGGATTATGTTGTCTTTCGTC 60.260 45.833 0.00 0.00 0.00 4.20
3342 7098 5.068234 TCGGATTATGTTGTCTTTCGTCT 57.932 39.130 0.00 0.00 0.00 4.18
3343 7099 6.198650 TCGGATTATGTTGTCTTTCGTCTA 57.801 37.500 0.00 0.00 0.00 2.59
3344 7100 6.032094 TCGGATTATGTTGTCTTTCGTCTAC 58.968 40.000 0.00 0.00 0.00 2.59
3345 7101 5.052567 CGGATTATGTTGTCTTTCGTCTACG 60.053 44.000 0.00 0.00 41.45 3.51
3346 7102 5.803967 GGATTATGTTGTCTTTCGTCTACGT 59.196 40.000 2.02 0.00 40.80 3.57
3347 7103 6.309737 GGATTATGTTGTCTTTCGTCTACGTT 59.690 38.462 0.00 0.00 40.80 3.99
3348 7104 6.680055 TTATGTTGTCTTTCGTCTACGTTC 57.320 37.500 0.00 0.00 40.80 3.95
3349 7105 4.031418 TGTTGTCTTTCGTCTACGTTCA 57.969 40.909 0.00 0.00 40.80 3.18
3350 7106 4.613944 TGTTGTCTTTCGTCTACGTTCAT 58.386 39.130 0.00 0.00 40.80 2.57
3351 7107 4.443063 TGTTGTCTTTCGTCTACGTTCATG 59.557 41.667 0.00 0.00 40.80 3.07
3352 7108 4.233123 TGTCTTTCGTCTACGTTCATGT 57.767 40.909 0.00 0.00 40.80 3.21
3353 7109 3.978855 TGTCTTTCGTCTACGTTCATGTG 59.021 43.478 0.00 0.00 40.80 3.21
3354 7110 3.979495 GTCTTTCGTCTACGTTCATGTGT 59.021 43.478 0.00 0.00 40.80 3.72
3355 7111 4.088213 GTCTTTCGTCTACGTTCATGTGTC 59.912 45.833 0.00 0.00 40.80 3.67
3356 7112 3.909776 TTCGTCTACGTTCATGTGTCT 57.090 42.857 0.00 0.00 40.80 3.41
3357 7113 3.909776 TCGTCTACGTTCATGTGTCTT 57.090 42.857 0.00 0.00 40.80 3.01
3358 7114 3.818387 TCGTCTACGTTCATGTGTCTTC 58.182 45.455 0.00 0.00 40.80 2.87
3359 7115 3.251487 TCGTCTACGTTCATGTGTCTTCA 59.749 43.478 0.00 0.00 40.80 3.02
3360 7116 3.604198 CGTCTACGTTCATGTGTCTTCAG 59.396 47.826 0.00 0.00 34.11 3.02
3361 7117 4.612939 CGTCTACGTTCATGTGTCTTCAGA 60.613 45.833 0.00 0.00 34.11 3.27
3362 7118 5.403246 GTCTACGTTCATGTGTCTTCAGAT 58.597 41.667 0.00 0.00 0.00 2.90
3363 7119 5.864474 GTCTACGTTCATGTGTCTTCAGATT 59.136 40.000 0.00 0.00 0.00 2.40
3364 7120 4.997905 ACGTTCATGTGTCTTCAGATTG 57.002 40.909 0.00 0.00 0.00 2.67
3365 7121 3.748048 ACGTTCATGTGTCTTCAGATTGG 59.252 43.478 0.00 0.00 0.00 3.16
3366 7122 3.996363 CGTTCATGTGTCTTCAGATTGGA 59.004 43.478 0.00 0.00 0.00 3.53
3367 7123 4.633126 CGTTCATGTGTCTTCAGATTGGAT 59.367 41.667 0.00 0.00 0.00 3.41
3368 7124 5.220548 CGTTCATGTGTCTTCAGATTGGATC 60.221 44.000 0.00 0.00 0.00 3.36
3369 7125 4.774124 TCATGTGTCTTCAGATTGGATCC 58.226 43.478 4.20 4.20 0.00 3.36
3370 7126 4.472470 TCATGTGTCTTCAGATTGGATCCT 59.528 41.667 14.23 0.00 0.00 3.24
3371 7127 4.916041 TGTGTCTTCAGATTGGATCCTT 57.084 40.909 14.23 0.00 0.00 3.36
3372 7128 4.836825 TGTGTCTTCAGATTGGATCCTTC 58.163 43.478 14.23 10.08 0.00 3.46
3373 7129 4.195416 GTGTCTTCAGATTGGATCCTTCC 58.805 47.826 14.23 1.48 42.94 3.46
3374 7130 4.080638 GTGTCTTCAGATTGGATCCTTCCT 60.081 45.833 14.23 3.95 43.07 3.36
3375 7131 5.129485 GTGTCTTCAGATTGGATCCTTCCTA 59.871 44.000 14.23 0.00 43.07 2.94
3376 7132 5.907662 TGTCTTCAGATTGGATCCTTCCTAT 59.092 40.000 14.23 0.00 43.07 2.57
3382 7138 1.048601 TGGATCCTTCCTATCCACGC 58.951 55.000 14.23 0.00 46.29 5.34
3383 7139 1.343069 GGATCCTTCCTATCCACGCT 58.657 55.000 3.84 0.00 42.21 5.07
3384 7140 2.158370 TGGATCCTTCCTATCCACGCTA 60.158 50.000 14.23 0.00 46.29 4.26
3385 7141 2.897969 GGATCCTTCCTATCCACGCTAA 59.102 50.000 3.84 0.00 42.21 3.09
3386 7142 3.515901 GGATCCTTCCTATCCACGCTAAT 59.484 47.826 3.84 0.00 42.21 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.979469 GAGCGAACATCGTATGGATCG 59.021 52.381 14.63 14.63 42.81 3.69
1 2 3.290308 AGAGCGAACATCGTATGGATC 57.710 47.619 1.45 0.00 42.81 3.36
2 3 4.848562 TTAGAGCGAACATCGTATGGAT 57.151 40.909 1.45 0.00 42.81 3.41
3 4 4.642445 TTTAGAGCGAACATCGTATGGA 57.358 40.909 1.45 0.00 42.81 3.41
4 5 5.907197 ATTTTAGAGCGAACATCGTATGG 57.093 39.130 1.45 0.00 42.81 2.74
5 6 7.166628 AGAATTTTAGAGCGAACATCGTATG 57.833 36.000 1.45 0.00 42.81 2.39
7 8 9.955208 TTATAGAATTTTAGAGCGAACATCGTA 57.045 29.630 1.45 0.00 42.81 3.43
8 9 8.867112 TTATAGAATTTTAGAGCGAACATCGT 57.133 30.769 1.45 0.00 42.81 3.73
15 16 9.181805 CGTCAGATTTATAGAATTTTAGAGCGA 57.818 33.333 0.00 0.00 0.00 4.93
16 17 8.969267 ACGTCAGATTTATAGAATTTTAGAGCG 58.031 33.333 0.00 0.00 0.00 5.03
31 32 8.876275 ACACTAAAACACTAACGTCAGATTTA 57.124 30.769 0.00 0.00 0.00 1.40
35 36 6.256321 GGAAACACTAAAACACTAACGTCAGA 59.744 38.462 0.00 0.00 0.00 3.27
37 38 6.108015 AGGAAACACTAAAACACTAACGTCA 58.892 36.000 0.00 0.00 0.00 4.35
66 67 1.377202 GAGGATCTGGGCAACGCAA 60.377 57.895 0.00 0.00 37.60 4.85
67 68 2.123248 TTGAGGATCTGGGCAACGCA 62.123 55.000 0.00 0.00 34.92 5.24
68 69 1.377202 TTGAGGATCTGGGCAACGC 60.377 57.895 0.00 0.00 34.92 4.84
69 70 1.026718 GGTTGAGGATCTGGGCAACG 61.027 60.000 0.00 0.00 41.00 4.10
70 71 0.329596 AGGTTGAGGATCTGGGCAAC 59.670 55.000 0.00 0.00 39.76 4.17
77 78 4.559862 AATTTGACGAGGTTGAGGATCT 57.440 40.909 0.00 0.00 34.92 2.75
85 86 4.641094 TGTGGTGTAAAATTTGACGAGGTT 59.359 37.500 1.15 0.00 0.00 3.50
91 92 6.202570 ACAATGCATGTGGTGTAAAATTTGAC 59.797 34.615 0.00 0.00 41.93 3.18
108 109 2.124151 GGGAGGCGGACAATGCAT 60.124 61.111 0.00 0.00 0.00 3.96
115 116 2.833582 TGATCGAGGGAGGCGGAC 60.834 66.667 0.00 0.00 0.00 4.79
119 120 0.537188 TTCAAGTGATCGAGGGAGGC 59.463 55.000 0.00 0.00 0.00 4.70
135 136 4.952957 TGCCGATTTGGATTTAGGAATTCA 59.047 37.500 7.93 0.00 42.00 2.57
149 150 3.747099 AGAAGACGATTTGCCGATTTG 57.253 42.857 0.00 0.00 0.00 2.32
192 193 4.778143 CTTTGGGCCGACGGAGGG 62.778 72.222 20.50 0.00 0.00 4.30
213 214 1.419387 GATGAGGCCATAGAAGGTGCT 59.581 52.381 5.01 0.00 32.09 4.40
214 215 1.875576 CGATGAGGCCATAGAAGGTGC 60.876 57.143 5.01 0.00 32.09 5.01
216 217 1.967066 CTCGATGAGGCCATAGAAGGT 59.033 52.381 5.01 0.00 34.71 3.50
238 239 4.584325 TCAAAGATGAACAGTTTGGGAAGG 59.416 41.667 10.44 0.00 32.96 3.46
255 256 4.079253 GCAACAAAGACCCCTATCAAAGA 58.921 43.478 0.00 0.00 0.00 2.52
260 261 5.297029 GTGATAAGCAACAAAGACCCCTATC 59.703 44.000 0.00 0.00 0.00 2.08
275 276 9.613428 AATTACTAATAGTGCAAGTGATAAGCA 57.387 29.630 2.68 0.00 35.63 3.91
353 362 1.583451 CATTGAAATGCGGACGCGG 60.583 57.895 12.47 0.00 45.51 6.46
358 367 3.616821 CGAAGTCTACATTGAAATGCGGA 59.383 43.478 2.92 0.00 40.04 5.54
360 369 3.785505 GCCGAAGTCTACATTGAAATGCG 60.786 47.826 2.92 0.00 40.04 4.73
366 375 3.953712 TTCTGCCGAAGTCTACATTGA 57.046 42.857 0.00 0.00 0.00 2.57
369 378 2.567615 AGGTTTCTGCCGAAGTCTACAT 59.432 45.455 0.00 0.00 0.00 2.29
379 388 1.202580 CCTATCTCCAGGTTTCTGCCG 60.203 57.143 0.00 0.00 39.61 5.69
398 407 3.654414 GATCTACCATGTTCGTGGATCC 58.346 50.000 16.70 4.20 40.47 3.36
408 417 1.337071 CGCACTACGGATCTACCATGT 59.663 52.381 0.00 0.00 38.90 3.21
421 430 0.932399 ACCACGAAACAACGCACTAC 59.068 50.000 0.00 0.00 36.70 2.73
422 431 1.328069 CAACCACGAAACAACGCACTA 59.672 47.619 0.00 0.00 36.70 2.74
423 432 0.098025 CAACCACGAAACAACGCACT 59.902 50.000 0.00 0.00 36.70 4.40
424 433 0.179184 ACAACCACGAAACAACGCAC 60.179 50.000 0.00 0.00 36.70 5.34
425 434 0.522180 AACAACCACGAAACAACGCA 59.478 45.000 0.00 0.00 36.70 5.24
435 444 2.554272 GCTACCGCAACAACCACG 59.446 61.111 0.00 0.00 35.78 4.94
437 446 1.599518 CAGGCTACCGCAACAACCA 60.600 57.895 0.00 0.00 38.10 3.67
440 449 1.302192 GGACAGGCTACCGCAACAA 60.302 57.895 0.00 0.00 38.10 2.83
454 463 0.533978 CAACACGGTGACCATGGACA 60.534 55.000 21.47 16.99 0.00 4.02
460 469 0.253610 AAAGGACAACACGGTGACCA 59.746 50.000 16.29 0.00 36.00 4.02
504 513 4.462483 AGGAGAGAAAGAGCTGTTACAGAG 59.538 45.833 17.40 0.00 32.44 3.35
513 522 3.263937 AGATTGCAAGGAGAGAAAGAGCT 59.736 43.478 4.94 0.00 0.00 4.09
523 532 7.615582 TGTATTACAAGAAGATTGCAAGGAG 57.384 36.000 4.94 0.00 0.00 3.69
524 533 7.011389 CGATGTATTACAAGAAGATTGCAAGGA 59.989 37.037 4.94 0.00 0.00 3.36
525 534 7.011389 TCGATGTATTACAAGAAGATTGCAAGG 59.989 37.037 4.94 0.00 0.00 3.61
526 535 7.848051 GTCGATGTATTACAAGAAGATTGCAAG 59.152 37.037 4.94 0.00 0.00 4.01
527 536 7.333174 TGTCGATGTATTACAAGAAGATTGCAA 59.667 33.333 0.00 0.00 0.00 4.08
529 538 7.119997 GTGTCGATGTATTACAAGAAGATTGC 58.880 38.462 0.00 0.00 0.00 3.56
531 540 6.019801 GCGTGTCGATGTATTACAAGAAGATT 60.020 38.462 0.00 0.00 0.00 2.40
532 541 5.459107 GCGTGTCGATGTATTACAAGAAGAT 59.541 40.000 0.00 0.00 0.00 2.40
540 551 3.306166 AGCTTTGCGTGTCGATGTATTAC 59.694 43.478 0.00 0.00 0.00 1.89
583 594 1.025041 GGCCAGGCGAAATTTCTAGG 58.975 55.000 15.92 12.17 0.00 3.02
584 595 0.657840 CGGCCAGGCGAAATTTCTAG 59.342 55.000 15.92 2.90 0.00 2.43
585 596 0.250793 TCGGCCAGGCGAAATTTCTA 59.749 50.000 14.35 0.00 0.00 2.10
587 598 0.242555 TTTCGGCCAGGCGAAATTTC 59.757 50.000 30.29 8.20 30.89 2.17
591 604 1.512156 GAGTTTTCGGCCAGGCGAAA 61.512 55.000 30.29 30.29 32.69 3.46
602 615 5.470368 TGGTCAAGACAGATAGAGTTTTCG 58.530 41.667 2.29 0.00 0.00 3.46
604 617 8.160106 AGAATTGGTCAAGACAGATAGAGTTTT 58.840 33.333 2.29 0.00 0.00 2.43
605 618 7.684529 AGAATTGGTCAAGACAGATAGAGTTT 58.315 34.615 2.29 0.00 0.00 2.66
639 652 0.104304 TCGCCCTTCCTTATTCTCGC 59.896 55.000 0.00 0.00 0.00 5.03
640 653 1.269831 CCTCGCCCTTCCTTATTCTCG 60.270 57.143 0.00 0.00 0.00 4.04
644 657 1.296002 AACCCTCGCCCTTCCTTATT 58.704 50.000 0.00 0.00 0.00 1.40
650 663 2.636412 GGCAAAACCCTCGCCCTTC 61.636 63.158 0.00 0.00 40.07 3.46
656 669 4.084888 GACGCGGCAAAACCCTCG 62.085 66.667 7.34 0.00 37.06 4.63
678 691 6.363473 GTGTAATTTTGAACAGAGAAGGTCG 58.637 40.000 0.00 0.00 0.00 4.79
686 699 4.452825 TCCACGGTGTAATTTTGAACAGA 58.547 39.130 7.45 0.00 0.00 3.41
693 706 3.823873 TGCAGATTCCACGGTGTAATTTT 59.176 39.130 7.45 0.00 0.00 1.82
699 712 1.672356 GCTGCAGATTCCACGGTGT 60.672 57.895 20.43 0.00 0.00 4.16
701 714 1.376424 CAGCTGCAGATTCCACGGT 60.376 57.895 20.43 0.00 0.00 4.83
702 715 1.364626 GACAGCTGCAGATTCCACGG 61.365 60.000 20.43 0.00 0.00 4.94
703 716 0.671472 TGACAGCTGCAGATTCCACG 60.671 55.000 20.43 0.36 0.00 4.94
705 718 1.279846 TCATGACAGCTGCAGATTCCA 59.720 47.619 20.43 11.84 0.00 3.53
741 755 0.671472 CTGTGCATGGTCAGCTCGAA 60.671 55.000 0.00 0.00 0.00 3.71
778 792 1.073177 CGTAAACGCGGGAAGACATT 58.927 50.000 12.47 0.00 0.00 2.71
781 795 0.436150 GAACGTAAACGCGGGAAGAC 59.564 55.000 12.47 0.00 44.43 3.01
787 802 2.343544 CCTAGAAAGAACGTAAACGCGG 59.656 50.000 12.47 0.00 44.43 6.46
805 820 1.855295 TGACACGGCAAGGATACCTA 58.145 50.000 0.00 0.00 31.13 3.08
807 822 1.816074 TTTGACACGGCAAGGATACC 58.184 50.000 0.00 0.00 37.17 2.73
809 824 3.134574 ACTTTTGACACGGCAAGGATA 57.865 42.857 0.00 0.00 0.00 2.59
813 828 3.143807 TCAAACTTTTGACACGGCAAG 57.856 42.857 0.07 0.00 41.88 4.01
815 830 2.416162 GGTTCAAACTTTTGACACGGCA 60.416 45.455 3.84 0.00 45.99 5.69
823 838 7.562454 TCAAGTACTAGGGTTCAAACTTTTG 57.438 36.000 0.00 0.00 39.48 2.44
824 839 8.584063 TTTCAAGTACTAGGGTTCAAACTTTT 57.416 30.769 0.00 0.00 0.00 2.27
827 842 7.114095 TGTTTTCAAGTACTAGGGTTCAAACT 58.886 34.615 0.00 0.00 0.00 2.66
829 844 7.941431 TTGTTTTCAAGTACTAGGGTTCAAA 57.059 32.000 0.00 0.00 34.60 2.69
830 845 7.941431 TTTGTTTTCAAGTACTAGGGTTCAA 57.059 32.000 0.00 0.00 41.09 2.69
886 908 3.392616 GGGCTGAAATAGGAGATCCTTGA 59.607 47.826 6.72 0.00 46.09 3.02
934 1090 8.635765 TCTACAATGAAAGTTTAAGCAAGGAT 57.364 30.769 0.00 0.00 0.00 3.24
946 1102 7.039714 GGAAGAAATGGGTTCTACAATGAAAGT 60.040 37.037 0.00 0.00 46.36 2.66
950 1106 5.261216 GGGAAGAAATGGGTTCTACAATGA 58.739 41.667 0.00 0.00 46.36 2.57
980 1139 5.188163 TCCATGATGATGAATTGGTTTGCTT 59.812 36.000 0.00 0.00 0.00 3.91
1003 1162 1.442857 CGTCGCCGGATGAGCTATC 60.443 63.158 5.05 0.00 34.93 2.08
1004 1163 1.244697 ATCGTCGCCGGATGAGCTAT 61.245 55.000 5.05 0.00 41.32 2.97
1007 1166 2.685387 AAGATCGTCGCCGGATGAGC 62.685 60.000 5.05 0.00 43.34 4.26
1030 1225 1.000938 GAAGTTGCTGGAGGCTTGTTG 60.001 52.381 0.00 0.00 42.39 3.33
1158 1357 1.664016 GCACCGAAACAACTGCATGAG 60.664 52.381 0.00 0.00 0.00 2.90
1339 1556 0.541998 TCTCCTTGAGGAACCGCTCA 60.542 55.000 0.76 0.00 44.91 4.26
1401 1618 1.493022 AGTAGTTGTTGGTGAAGCCCA 59.507 47.619 0.00 0.00 36.04 5.36
1694 1944 1.202973 CGCATCGTCTGTAAGCCGAG 61.203 60.000 0.00 0.00 33.66 4.63
1702 1952 4.819761 ATGGCGCGCATCGTCTGT 62.820 61.111 34.42 5.68 44.46 3.41
2102 4465 2.108514 CGCCATCACAACTCGCCAT 61.109 57.895 0.00 0.00 0.00 4.40
2341 4719 2.624838 AGGAACACCATTTGCAGAAGTG 59.375 45.455 8.65 8.65 34.61 3.16
2347 4725 0.950836 CACGAGGAACACCATTTGCA 59.049 50.000 0.00 0.00 0.00 4.08
2408 4786 1.757118 CCTTGGGCTTAGATCGAGTCA 59.243 52.381 6.17 1.43 0.00 3.41
2433 4812 7.391620 TCTACGTCTATTGTTCCAAGGAAAAT 58.608 34.615 2.55 8.34 35.75 1.82
2477 4856 8.198109 CAGAGGGAGAGAAATTTAGAATAACGA 58.802 37.037 0.00 0.00 0.00 3.85
2493 4872 9.103861 GATTTGTATTTAGAAACAGAGGGAGAG 57.896 37.037 0.00 0.00 0.00 3.20
2514 4895 8.595362 AATTACTCCCTCCCTAAAAAGATTTG 57.405 34.615 0.00 0.00 0.00 2.32
2518 4899 6.273730 TGTGAATTACTCCCTCCCTAAAAAGA 59.726 38.462 0.00 0.00 0.00 2.52
2520 4901 6.457159 TGTGAATTACTCCCTCCCTAAAAA 57.543 37.500 0.00 0.00 0.00 1.94
2545 6261 0.665835 GATGTTTTGGGACGTGTGCA 59.334 50.000 0.00 0.00 0.00 4.57
2546 6262 0.951558 AGATGTTTTGGGACGTGTGC 59.048 50.000 0.00 0.00 0.00 4.57
2551 6267 6.205101 AGTAGTAGTAGATGTTTTGGGACG 57.795 41.667 0.00 0.00 0.00 4.79
2554 6270 8.504005 CAACAAAGTAGTAGTAGATGTTTTGGG 58.496 37.037 0.00 0.00 0.00 4.12
2555 6271 9.052759 ACAACAAAGTAGTAGTAGATGTTTTGG 57.947 33.333 0.00 0.00 0.00 3.28
2557 6273 9.826574 TGACAACAAAGTAGTAGTAGATGTTTT 57.173 29.630 0.00 0.00 0.00 2.43
2558 6274 9.998106 ATGACAACAAAGTAGTAGTAGATGTTT 57.002 29.630 0.00 0.00 0.00 2.83
2559 6275 9.998106 AATGACAACAAAGTAGTAGTAGATGTT 57.002 29.630 0.00 0.00 0.00 2.71
2560 6276 9.640963 GAATGACAACAAAGTAGTAGTAGATGT 57.359 33.333 0.00 0.00 0.00 3.06
2561 6277 8.799091 CGAATGACAACAAAGTAGTAGTAGATG 58.201 37.037 0.00 0.00 0.00 2.90
2562 6278 7.488471 GCGAATGACAACAAAGTAGTAGTAGAT 59.512 37.037 0.00 0.00 0.00 1.98
2563 6279 6.805271 GCGAATGACAACAAAGTAGTAGTAGA 59.195 38.462 0.00 0.00 0.00 2.59
2564 6280 6.807230 AGCGAATGACAACAAAGTAGTAGTAG 59.193 38.462 0.00 0.00 0.00 2.57
2565 6281 6.584942 CAGCGAATGACAACAAAGTAGTAGTA 59.415 38.462 0.00 0.00 0.00 1.82
2566 6282 5.405571 CAGCGAATGACAACAAAGTAGTAGT 59.594 40.000 0.00 0.00 0.00 2.73
2567 6283 5.163953 CCAGCGAATGACAACAAAGTAGTAG 60.164 44.000 0.00 0.00 0.00 2.57
2568 6284 4.688879 CCAGCGAATGACAACAAAGTAGTA 59.311 41.667 0.00 0.00 0.00 1.82
2569 6285 3.498397 CCAGCGAATGACAACAAAGTAGT 59.502 43.478 0.00 0.00 0.00 2.73
2570 6286 3.667960 GCCAGCGAATGACAACAAAGTAG 60.668 47.826 0.00 0.00 0.00 2.57
2571 6287 2.225491 GCCAGCGAATGACAACAAAGTA 59.775 45.455 0.00 0.00 0.00 2.24
2572 6288 1.001378 GCCAGCGAATGACAACAAAGT 60.001 47.619 0.00 0.00 0.00 2.66
2573 6289 1.001487 TGCCAGCGAATGACAACAAAG 60.001 47.619 0.00 0.00 0.00 2.77
2574 6290 1.028130 TGCCAGCGAATGACAACAAA 58.972 45.000 0.00 0.00 0.00 2.83
2575 6291 1.028130 TTGCCAGCGAATGACAACAA 58.972 45.000 0.00 0.00 0.00 2.83
2576 6292 2.712984 TTGCCAGCGAATGACAACA 58.287 47.368 0.00 0.00 0.00 3.33
2577 6293 3.092081 GTTGCCAGCGAATGACAAC 57.908 52.632 4.90 4.90 43.64 3.32
2578 6294 1.028130 TTGTTGCCAGCGAATGACAA 58.972 45.000 0.00 0.00 0.00 3.18
2579 6295 1.068402 CATTGTTGCCAGCGAATGACA 60.068 47.619 0.00 0.00 0.00 3.58
2580 6296 1.621107 CATTGTTGCCAGCGAATGAC 58.379 50.000 0.00 0.00 0.00 3.06
2581 6297 0.527113 CCATTGTTGCCAGCGAATGA 59.473 50.000 9.28 0.00 0.00 2.57
2582 6298 0.527113 TCCATTGTTGCCAGCGAATG 59.473 50.000 0.00 0.00 0.00 2.67
2583 6299 0.813184 CTCCATTGTTGCCAGCGAAT 59.187 50.000 0.00 0.00 0.00 3.34
2584 6300 1.243342 CCTCCATTGTTGCCAGCGAA 61.243 55.000 0.00 0.00 0.00 4.70
2585 6301 1.675310 CCTCCATTGTTGCCAGCGA 60.675 57.895 0.00 0.00 0.00 4.93
2586 6302 0.676466 TACCTCCATTGTTGCCAGCG 60.676 55.000 0.00 0.00 0.00 5.18
2587 6303 1.098050 CTACCTCCATTGTTGCCAGC 58.902 55.000 0.00 0.00 0.00 4.85
2588 6304 1.683011 CCCTACCTCCATTGTTGCCAG 60.683 57.143 0.00 0.00 0.00 4.85
2589 6305 0.331278 CCCTACCTCCATTGTTGCCA 59.669 55.000 0.00 0.00 0.00 4.92
2590 6306 0.623723 TCCCTACCTCCATTGTTGCC 59.376 55.000 0.00 0.00 0.00 4.52
2591 6307 1.408822 CCTCCCTACCTCCATTGTTGC 60.409 57.143 0.00 0.00 0.00 4.17
2592 6308 2.196595 TCCTCCCTACCTCCATTGTTG 58.803 52.381 0.00 0.00 0.00 3.33
2593 6309 2.661176 TCCTCCCTACCTCCATTGTT 57.339 50.000 0.00 0.00 0.00 2.83
2594 6310 2.225908 ACTTCCTCCCTACCTCCATTGT 60.226 50.000 0.00 0.00 0.00 2.71
2595 6311 2.482494 ACTTCCTCCCTACCTCCATTG 58.518 52.381 0.00 0.00 0.00 2.82
2596 6312 2.972153 ACTTCCTCCCTACCTCCATT 57.028 50.000 0.00 0.00 0.00 3.16
2597 6313 4.578149 ATTACTTCCTCCCTACCTCCAT 57.422 45.455 0.00 0.00 0.00 3.41
2598 6314 4.265124 TGAATTACTTCCTCCCTACCTCCA 60.265 45.833 0.00 0.00 0.00 3.86
2599 6315 4.101274 GTGAATTACTTCCTCCCTACCTCC 59.899 50.000 0.00 0.00 0.00 4.30
2600 6316 4.715297 TGTGAATTACTTCCTCCCTACCTC 59.285 45.833 0.00 0.00 0.00 3.85
2601 6317 4.695606 TGTGAATTACTTCCTCCCTACCT 58.304 43.478 0.00 0.00 0.00 3.08
2602 6318 5.431179 TTGTGAATTACTTCCTCCCTACC 57.569 43.478 0.00 0.00 0.00 3.18
2603 6319 5.297029 GCATTGTGAATTACTTCCTCCCTAC 59.703 44.000 0.00 0.00 0.00 3.18
2604 6320 5.045213 TGCATTGTGAATTACTTCCTCCCTA 60.045 40.000 0.00 0.00 0.00 3.53
2605 6321 4.263905 TGCATTGTGAATTACTTCCTCCCT 60.264 41.667 0.00 0.00 0.00 4.20
2606 6322 4.016444 TGCATTGTGAATTACTTCCTCCC 58.984 43.478 0.00 0.00 0.00 4.30
2607 6323 4.458989 TGTGCATTGTGAATTACTTCCTCC 59.541 41.667 0.00 0.00 0.00 4.30
2608 6324 5.393962 GTGTGCATTGTGAATTACTTCCTC 58.606 41.667 0.00 0.00 0.00 3.71
2609 6325 4.083324 CGTGTGCATTGTGAATTACTTCCT 60.083 41.667 0.00 0.00 0.00 3.36
2610 6326 4.158384 CGTGTGCATTGTGAATTACTTCC 58.842 43.478 0.00 0.00 0.00 3.46
2611 6327 4.783242 ACGTGTGCATTGTGAATTACTTC 58.217 39.130 0.00 0.00 0.00 3.01
2612 6328 4.610456 CGACGTGTGCATTGTGAATTACTT 60.610 41.667 0.00 0.00 0.00 2.24
2613 6329 3.120683 CGACGTGTGCATTGTGAATTACT 60.121 43.478 0.00 0.00 0.00 2.24
2614 6330 3.152983 CGACGTGTGCATTGTGAATTAC 58.847 45.455 0.00 0.00 0.00 1.89
2615 6331 2.412195 GCGACGTGTGCATTGTGAATTA 60.412 45.455 0.00 0.00 0.00 1.40
2616 6332 1.662876 GCGACGTGTGCATTGTGAATT 60.663 47.619 0.00 0.00 0.00 2.17
2617 6333 0.110238 GCGACGTGTGCATTGTGAAT 60.110 50.000 0.00 0.00 0.00 2.57
2618 6334 1.278337 GCGACGTGTGCATTGTGAA 59.722 52.632 0.00 0.00 0.00 3.18
2619 6335 1.432270 TTGCGACGTGTGCATTGTGA 61.432 50.000 12.34 0.00 42.84 3.58
2620 6336 0.590984 TTTGCGACGTGTGCATTGTG 60.591 50.000 12.34 0.00 42.84 3.33
2621 6337 0.099613 TTTTGCGACGTGTGCATTGT 59.900 45.000 12.34 0.00 42.84 2.71
2622 6338 1.072219 GTTTTTGCGACGTGTGCATTG 60.072 47.619 12.34 0.00 42.84 2.82
2623 6339 1.196200 GTTTTTGCGACGTGTGCATT 58.804 45.000 12.34 0.00 42.84 3.56
2624 6340 0.099613 TGTTTTTGCGACGTGTGCAT 59.900 45.000 12.34 0.00 42.84 3.96
2625 6341 0.099613 ATGTTTTTGCGACGTGTGCA 59.900 45.000 7.91 7.91 41.38 4.57
2626 6342 0.770008 GATGTTTTTGCGACGTGTGC 59.230 50.000 0.00 0.00 0.00 4.57
2627 6343 2.098215 TGATGTTTTTGCGACGTGTG 57.902 45.000 0.00 0.00 0.00 3.82
2628 6344 2.548057 AGATGATGTTTTTGCGACGTGT 59.452 40.909 0.00 0.00 0.00 4.49
2629 6345 2.904319 CAGATGATGTTTTTGCGACGTG 59.096 45.455 0.00 0.00 0.00 4.49
2630 6346 2.665519 GCAGATGATGTTTTTGCGACGT 60.666 45.455 0.00 0.00 0.00 4.34
2631 6347 1.906966 GCAGATGATGTTTTTGCGACG 59.093 47.619 0.00 0.00 0.00 5.12
2632 6348 3.207474 AGCAGATGATGTTTTTGCGAC 57.793 42.857 0.00 0.00 39.63 5.19
2633 6349 3.921119 AAGCAGATGATGTTTTTGCGA 57.079 38.095 0.00 0.00 39.63 5.10
2634 6350 3.737266 ACAAAGCAGATGATGTTTTTGCG 59.263 39.130 0.00 0.00 39.98 4.85
2635 6351 5.006941 ACAACAAAGCAGATGATGTTTTTGC 59.993 36.000 0.00 0.00 39.98 3.68
2636 6352 6.592798 ACAACAAAGCAGATGATGTTTTTG 57.407 33.333 0.00 0.00 39.98 2.44
2637 6353 8.891671 ATAACAACAAAGCAGATGATGTTTTT 57.108 26.923 14.05 5.61 39.74 1.94
2646 6362 3.127548 CAGCGGATAACAACAAAGCAGAT 59.872 43.478 0.00 0.00 0.00 2.90
2660 6376 2.224281 CCTTCATTGTAGGCAGCGGATA 60.224 50.000 0.00 0.00 0.00 2.59
2664 6380 1.453155 AACCTTCATTGTAGGCAGCG 58.547 50.000 9.09 0.00 36.17 5.18
2678 6394 4.142790 TGAGAGTGTAGAGACGAAACCTT 58.857 43.478 0.00 0.00 0.00 3.50
2692 6408 3.276857 CTTAGCATTGGCATGAGAGTGT 58.723 45.455 0.00 0.00 44.61 3.55
2694 6410 3.641434 ACTTAGCATTGGCATGAGAGT 57.359 42.857 0.00 0.00 44.61 3.24
2714 6430 1.748950 ACACGGTTCATGCATGCATA 58.251 45.000 31.73 15.92 34.91 3.14
2719 6435 1.816224 GGGTAAACACGGTTCATGCAT 59.184 47.619 0.00 0.00 0.00 3.96
2720 6436 1.240256 GGGTAAACACGGTTCATGCA 58.760 50.000 0.00 0.00 0.00 3.96
2721 6437 0.524414 GGGGTAAACACGGTTCATGC 59.476 55.000 0.00 0.00 0.00 4.06
2722 6438 2.081462 GAGGGGTAAACACGGTTCATG 58.919 52.381 0.00 0.00 0.00 3.07
2730 6446 5.422650 AGACATAGAAGAGAGGGGTAAACAC 59.577 44.000 0.00 0.00 0.00 3.32
2770 6518 0.597568 AATACGACAACCACGACGGA 59.402 50.000 0.00 0.00 38.63 4.69
2858 6607 1.533033 TGAGGAGGAACCGTGAGCA 60.533 57.895 0.00 0.00 44.74 4.26
2859 6608 1.079750 GTGAGGAGGAACCGTGAGC 60.080 63.158 0.00 0.00 44.74 4.26
2861 6610 0.898789 GAGGTGAGGAGGAACCGTGA 60.899 60.000 0.00 0.00 44.74 4.35
2867 6616 1.392534 GGGGAGAGGTGAGGAGGAA 59.607 63.158 0.00 0.00 0.00 3.36
2885 6634 7.037438 AGCTTTTTGATACATGCAAATAGGTG 58.963 34.615 14.01 0.00 40.69 4.00
2886 6635 7.123247 AGAGCTTTTTGATACATGCAAATAGGT 59.877 33.333 14.40 14.40 42.96 3.08
2888 6637 8.186163 TGAGAGCTTTTTGATACATGCAAATAG 58.814 33.333 0.00 1.88 37.36 1.73
2926 6680 9.661563 TCAATTACTGTACAAAAACCGATCTAT 57.338 29.630 0.00 0.00 0.00 1.98
2927 6681 9.491675 TTCAATTACTGTACAAAAACCGATCTA 57.508 29.630 0.00 0.00 0.00 1.98
2955 6709 7.494952 CCTGGTAGTAGCCACTAATAGTTTTTC 59.505 40.741 0.00 0.00 38.98 2.29
2961 6715 5.009811 GTCACCTGGTAGTAGCCACTAATAG 59.990 48.000 0.00 0.00 38.98 1.73
2980 6735 2.359531 CCTACACTAGCTAGCTGTCACC 59.640 54.545 27.68 0.00 0.00 4.02
2983 6738 2.657143 ACCCTACACTAGCTAGCTGTC 58.343 52.381 27.68 0.00 0.00 3.51
2985 6740 5.416326 CCTATAACCCTACACTAGCTAGCTG 59.584 48.000 27.68 18.34 0.00 4.24
2997 6752 1.071857 GGTGGCTGCCTATAACCCTAC 59.928 57.143 21.03 5.84 0.00 3.18
2999 6754 1.696097 CGGTGGCTGCCTATAACCCT 61.696 60.000 21.03 0.00 0.00 4.34
3000 6755 1.227853 CGGTGGCTGCCTATAACCC 60.228 63.158 21.03 8.79 0.00 4.11
3024 6779 1.500474 ATCTCTTTCGGGAGGATGCA 58.500 50.000 0.00 0.00 34.39 3.96
3026 6781 3.556004 GCCTAATCTCTTTCGGGAGGATG 60.556 52.174 0.00 0.00 34.39 3.51
3027 6782 2.635427 GCCTAATCTCTTTCGGGAGGAT 59.365 50.000 0.00 0.00 34.39 3.24
3035 6790 5.600898 AGGTAGAGGAAGCCTAATCTCTTTC 59.399 44.000 0.00 0.00 37.68 2.62
3045 6800 2.462723 GACAAGAGGTAGAGGAAGCCT 58.537 52.381 0.00 0.00 36.03 4.58
3069 6824 3.780064 GATACGGACCGGCGGGAAC 62.780 68.421 31.78 19.93 36.97 3.62
3072 6827 3.569049 GATGATACGGACCGGCGGG 62.569 68.421 31.78 15.34 40.11 6.13
3075 6830 1.289380 GGAGATGATACGGACCGGC 59.711 63.158 20.00 7.77 0.00 6.13
3077 6832 1.135660 CATCGGAGATGATACGGACCG 60.136 57.143 13.61 13.61 45.12 4.79
3079 6834 3.692101 AGATCATCGGAGATGATACGGAC 59.308 47.826 21.19 11.31 45.12 4.79
3084 6839 5.514169 AGCCTAAGATCATCGGAGATGATA 58.486 41.667 21.19 8.92 45.12 2.15
3085 6840 4.352009 AGCCTAAGATCATCGGAGATGAT 58.648 43.478 21.28 21.28 45.12 2.45
3094 6849 3.072184 ACACCCATGAGCCTAAGATCATC 59.928 47.826 0.00 0.00 45.99 2.92
3098 6853 1.133976 GCACACCCATGAGCCTAAGAT 60.134 52.381 0.00 0.00 36.51 2.40
3099 6854 0.253044 GCACACCCATGAGCCTAAGA 59.747 55.000 0.00 0.00 36.51 2.10
3104 6859 4.722700 ACCGCACACCCATGAGCC 62.723 66.667 0.00 0.00 39.06 4.70
3106 6861 2.541547 ATCCACCGCACACCCATGAG 62.542 60.000 0.00 0.00 0.00 2.90
3111 6866 4.796495 GGGATCCACCGCACACCC 62.796 72.222 15.23 0.00 40.11 4.61
3119 6874 4.586235 CATGGGCCGGGATCCACC 62.586 72.222 15.23 11.54 35.67 4.61
3143 6898 3.440522 AGCATCTAAAAACGGAGCCTTTC 59.559 43.478 0.00 0.00 0.00 2.62
3144 6899 3.421844 AGCATCTAAAAACGGAGCCTTT 58.578 40.909 0.00 0.00 0.00 3.11
3146 6901 2.789409 AGCATCTAAAAACGGAGCCT 57.211 45.000 0.00 0.00 0.00 4.58
3160 6915 6.691508 ACCCTAACAAATTTGAAGAAGCATC 58.308 36.000 24.64 0.00 0.00 3.91
3171 6926 8.972458 AGCAAAACATAAACCCTAACAAATTT 57.028 26.923 0.00 0.00 0.00 1.82
3173 6928 9.705290 CTAAGCAAAACATAAACCCTAACAAAT 57.295 29.630 0.00 0.00 0.00 2.32
3183 6939 7.858879 TCTCGTTTTCCTAAGCAAAACATAAAC 59.141 33.333 9.25 0.00 41.79 2.01
3187 6943 5.560183 CGTCTCGTTTTCCTAAGCAAAACAT 60.560 40.000 9.25 0.00 41.79 2.71
3192 6948 3.374220 TCGTCTCGTTTTCCTAAGCAA 57.626 42.857 0.00 0.00 0.00 3.91
3197 6953 1.614903 TGCCTTCGTCTCGTTTTCCTA 59.385 47.619 0.00 0.00 0.00 2.94
3199 6955 0.790814 CTGCCTTCGTCTCGTTTTCC 59.209 55.000 0.00 0.00 0.00 3.13
3203 6959 1.080434 GAGCTGCCTTCGTCTCGTT 60.080 57.895 0.00 0.00 0.00 3.85
3206 6962 1.038130 TAGGGAGCTGCCTTCGTCTC 61.038 60.000 33.24 0.00 36.66 3.36
3213 6969 0.030705 TCCATCTTAGGGAGCTGCCT 60.031 55.000 30.92 30.92 36.66 4.75
3215 6971 2.105477 TCATTCCATCTTAGGGAGCTGC 59.895 50.000 0.00 0.00 35.46 5.25
3217 6973 2.978278 CCTCATTCCATCTTAGGGAGCT 59.022 50.000 0.00 0.00 35.46 4.09
3225 6981 3.370953 CGGGAAGAACCTCATTCCATCTT 60.371 47.826 6.33 0.00 45.70 2.40
3227 6983 2.565841 CGGGAAGAACCTCATTCCATC 58.434 52.381 6.33 0.00 45.70 3.51
3228 6984 1.408822 GCGGGAAGAACCTCATTCCAT 60.409 52.381 6.33 0.00 45.70 3.41
3229 6985 0.035439 GCGGGAAGAACCTCATTCCA 60.035 55.000 6.33 0.00 45.70 3.53
3230 6986 0.748367 GGCGGGAAGAACCTCATTCC 60.748 60.000 0.00 0.00 43.60 3.01
3232 6988 1.486726 CTAGGCGGGAAGAACCTCATT 59.513 52.381 0.00 0.00 38.98 2.57
3234 6990 1.614241 GCTAGGCGGGAAGAACCTCA 61.614 60.000 0.00 0.00 38.98 3.86
3235 6991 1.144276 GCTAGGCGGGAAGAACCTC 59.856 63.158 0.00 0.00 38.98 3.85
3236 6992 2.368011 GGCTAGGCGGGAAGAACCT 61.368 63.158 0.00 0.00 38.98 3.50
3237 6993 2.189784 GGCTAGGCGGGAAGAACC 59.810 66.667 0.00 0.00 38.08 3.62
3238 6994 1.144276 GAGGCTAGGCGGGAAGAAC 59.856 63.158 11.10 0.00 0.00 3.01
3239 6995 2.064581 GGAGGCTAGGCGGGAAGAA 61.065 63.158 11.10 0.00 0.00 2.52
3240 6996 2.444140 GGAGGCTAGGCGGGAAGA 60.444 66.667 11.10 0.00 0.00 2.87
3241 6997 3.917760 CGGAGGCTAGGCGGGAAG 61.918 72.222 11.10 0.00 0.00 3.46
3242 6998 4.772231 ACGGAGGCTAGGCGGGAA 62.772 66.667 11.10 0.00 0.00 3.97
3243 6999 4.772231 AACGGAGGCTAGGCGGGA 62.772 66.667 11.10 0.00 0.00 5.14
3244 7000 3.735037 GAAACGGAGGCTAGGCGGG 62.735 68.421 11.10 6.69 0.00 6.13
3245 7001 2.202892 GAAACGGAGGCTAGGCGG 60.203 66.667 11.10 7.05 0.00 6.13
3246 7002 1.519455 CTGAAACGGAGGCTAGGCG 60.519 63.158 11.10 0.00 0.00 5.52
3247 7003 0.741221 CACTGAAACGGAGGCTAGGC 60.741 60.000 8.55 8.55 0.00 3.93
3248 7004 0.108138 CCACTGAAACGGAGGCTAGG 60.108 60.000 0.00 0.00 0.00 3.02
3249 7005 0.608640 ACCACTGAAACGGAGGCTAG 59.391 55.000 0.00 0.00 0.00 3.42
3250 7006 0.320374 CACCACTGAAACGGAGGCTA 59.680 55.000 0.00 0.00 0.00 3.93
3251 7007 1.071471 CACCACTGAAACGGAGGCT 59.929 57.895 0.00 0.00 0.00 4.58
3252 7008 1.966451 CCACCACTGAAACGGAGGC 60.966 63.158 0.00 0.00 0.00 4.70
3253 7009 1.302511 CCCACCACTGAAACGGAGG 60.303 63.158 0.00 0.00 33.17 4.30
3254 7010 0.602905 GACCCACCACTGAAACGGAG 60.603 60.000 0.00 0.00 0.00 4.63
3255 7011 1.052124 AGACCCACCACTGAAACGGA 61.052 55.000 0.00 0.00 0.00 4.69
3256 7012 0.682852 TAGACCCACCACTGAAACGG 59.317 55.000 0.00 0.00 0.00 4.44
3257 7013 1.939838 GCTAGACCCACCACTGAAACG 60.940 57.143 0.00 0.00 0.00 3.60
3258 7014 1.071699 TGCTAGACCCACCACTGAAAC 59.928 52.381 0.00 0.00 0.00 2.78
3259 7015 1.429930 TGCTAGACCCACCACTGAAA 58.570 50.000 0.00 0.00 0.00 2.69
3260 7016 1.656587 ATGCTAGACCCACCACTGAA 58.343 50.000 0.00 0.00 0.00 3.02
3261 7017 1.278985 CAATGCTAGACCCACCACTGA 59.721 52.381 0.00 0.00 0.00 3.41
3262 7018 1.003580 ACAATGCTAGACCCACCACTG 59.996 52.381 0.00 0.00 0.00 3.66
3263 7019 1.279271 GACAATGCTAGACCCACCACT 59.721 52.381 0.00 0.00 0.00 4.00
3264 7020 1.739067 GACAATGCTAGACCCACCAC 58.261 55.000 0.00 0.00 0.00 4.16
3265 7021 0.249120 CGACAATGCTAGACCCACCA 59.751 55.000 0.00 0.00 0.00 4.17
3266 7022 0.462047 CCGACAATGCTAGACCCACC 60.462 60.000 0.00 0.00 0.00 4.61
3267 7023 0.249398 ACCGACAATGCTAGACCCAC 59.751 55.000 0.00 0.00 0.00 4.61
3268 7024 0.249120 CACCGACAATGCTAGACCCA 59.751 55.000 0.00 0.00 0.00 4.51
3269 7025 0.462047 CCACCGACAATGCTAGACCC 60.462 60.000 0.00 0.00 0.00 4.46
3270 7026 0.462047 CCCACCGACAATGCTAGACC 60.462 60.000 0.00 0.00 0.00 3.85
3271 7027 1.090052 GCCCACCGACAATGCTAGAC 61.090 60.000 0.00 0.00 0.00 2.59
3272 7028 1.220749 GCCCACCGACAATGCTAGA 59.779 57.895 0.00 0.00 0.00 2.43
3273 7029 0.464373 ATGCCCACCGACAATGCTAG 60.464 55.000 0.00 0.00 0.00 3.42
3274 7030 0.747644 CATGCCCACCGACAATGCTA 60.748 55.000 0.00 0.00 0.00 3.49
3275 7031 2.048023 CATGCCCACCGACAATGCT 61.048 57.895 0.00 0.00 0.00 3.79
3276 7032 2.342650 ACATGCCCACCGACAATGC 61.343 57.895 0.00 0.00 0.00 3.56
3277 7033 1.507630 CACATGCCCACCGACAATG 59.492 57.895 0.00 0.00 0.00 2.82
3278 7034 1.678635 CCACATGCCCACCGACAAT 60.679 57.895 0.00 0.00 0.00 2.71
3279 7035 2.282110 CCACATGCCCACCGACAA 60.282 61.111 0.00 0.00 0.00 3.18
3280 7036 3.245346 TCCACATGCCCACCGACA 61.245 61.111 0.00 0.00 0.00 4.35
3281 7037 2.436646 CTCCACATGCCCACCGAC 60.437 66.667 0.00 0.00 0.00 4.79
3282 7038 3.716195 CCTCCACATGCCCACCGA 61.716 66.667 0.00 0.00 0.00 4.69
3283 7039 4.033776 ACCTCCACATGCCCACCG 62.034 66.667 0.00 0.00 0.00 4.94
3284 7040 2.361610 CACCTCCACATGCCCACC 60.362 66.667 0.00 0.00 0.00 4.61
3285 7041 1.973281 CACACCTCCACATGCCCAC 60.973 63.158 0.00 0.00 0.00 4.61
3286 7042 2.410322 GACACACCTCCACATGCCCA 62.410 60.000 0.00 0.00 0.00 5.36
3287 7043 1.675641 GACACACCTCCACATGCCC 60.676 63.158 0.00 0.00 0.00 5.36
3288 7044 0.674895 GAGACACACCTCCACATGCC 60.675 60.000 0.00 0.00 0.00 4.40
3289 7045 1.016130 CGAGACACACCTCCACATGC 61.016 60.000 0.00 0.00 0.00 4.06
3290 7046 0.390340 CCGAGACACACCTCCACATG 60.390 60.000 0.00 0.00 0.00 3.21
3291 7047 0.541998 TCCGAGACACACCTCCACAT 60.542 55.000 0.00 0.00 0.00 3.21
3292 7048 1.152631 TCCGAGACACACCTCCACA 60.153 57.895 0.00 0.00 0.00 4.17
3293 7049 1.289380 GTCCGAGACACACCTCCAC 59.711 63.158 0.00 0.00 32.09 4.02
3294 7050 2.265904 CGTCCGAGACACACCTCCA 61.266 63.158 5.15 0.00 32.09 3.86
3295 7051 2.567049 CGTCCGAGACACACCTCC 59.433 66.667 5.15 0.00 32.09 4.30
3296 7052 1.313812 ATCCGTCCGAGACACACCTC 61.314 60.000 5.15 0.00 32.09 3.85
3297 7053 1.304217 ATCCGTCCGAGACACACCT 60.304 57.895 5.15 0.00 32.09 4.00
3298 7054 1.139095 GATCCGTCCGAGACACACC 59.861 63.158 5.15 0.00 32.09 4.16
3299 7055 0.179161 CAGATCCGTCCGAGACACAC 60.179 60.000 5.15 0.00 32.09 3.82
3300 7056 1.934220 GCAGATCCGTCCGAGACACA 61.934 60.000 5.15 0.00 32.09 3.72
3301 7057 1.226717 GCAGATCCGTCCGAGACAC 60.227 63.158 5.15 0.00 32.09 3.67
3302 7058 1.377366 GAGCAGATCCGTCCGAGACA 61.377 60.000 5.15 0.00 32.09 3.41
3303 7059 1.357334 GAGCAGATCCGTCCGAGAC 59.643 63.158 0.00 0.00 0.00 3.36
3304 7060 2.180862 CGAGCAGATCCGTCCGAGA 61.181 63.158 0.00 0.00 0.00 4.04
3305 7061 2.329690 CGAGCAGATCCGTCCGAG 59.670 66.667 0.00 0.00 0.00 4.63
3306 7062 2.960359 ATCCGAGCAGATCCGTCCGA 62.960 60.000 0.00 0.00 0.00 4.55
3307 7063 2.076622 AATCCGAGCAGATCCGTCCG 62.077 60.000 0.00 0.00 0.00 4.79
3308 7064 0.959553 TAATCCGAGCAGATCCGTCC 59.040 55.000 0.00 0.00 0.00 4.79
3309 7065 2.029828 ACATAATCCGAGCAGATCCGTC 60.030 50.000 0.00 0.00 0.00 4.79
3310 7066 1.964223 ACATAATCCGAGCAGATCCGT 59.036 47.619 0.00 0.00 0.00 4.69
3311 7067 2.732412 ACATAATCCGAGCAGATCCG 57.268 50.000 0.00 0.00 0.00 4.18
3312 7068 3.733337 ACAACATAATCCGAGCAGATCC 58.267 45.455 0.00 0.00 0.00 3.36
3313 7069 4.626042 AGACAACATAATCCGAGCAGATC 58.374 43.478 0.00 0.00 0.00 2.75
3314 7070 4.679373 AGACAACATAATCCGAGCAGAT 57.321 40.909 0.00 0.00 0.00 2.90
3315 7071 4.471904 AAGACAACATAATCCGAGCAGA 57.528 40.909 0.00 0.00 0.00 4.26
3316 7072 4.259970 CGAAAGACAACATAATCCGAGCAG 60.260 45.833 0.00 0.00 0.00 4.24
3317 7073 3.616821 CGAAAGACAACATAATCCGAGCA 59.383 43.478 0.00 0.00 0.00 4.26
3318 7074 3.617263 ACGAAAGACAACATAATCCGAGC 59.383 43.478 0.00 0.00 0.00 5.03
3319 7075 5.103000 AGACGAAAGACAACATAATCCGAG 58.897 41.667 0.00 0.00 0.00 4.63
3320 7076 5.068234 AGACGAAAGACAACATAATCCGA 57.932 39.130 0.00 0.00 0.00 4.55
3321 7077 5.052567 CGTAGACGAAAGACAACATAATCCG 60.053 44.000 0.00 0.00 43.02 4.18
3322 7078 5.803967 ACGTAGACGAAAGACAACATAATCC 59.196 40.000 9.41 0.00 43.02 3.01
3323 7079 6.866179 ACGTAGACGAAAGACAACATAATC 57.134 37.500 9.41 0.00 43.02 1.75
3324 7080 6.864685 TGAACGTAGACGAAAGACAACATAAT 59.135 34.615 9.41 0.00 43.02 1.28
3325 7081 6.207928 TGAACGTAGACGAAAGACAACATAA 58.792 36.000 9.41 0.00 43.02 1.90
3326 7082 5.761003 TGAACGTAGACGAAAGACAACATA 58.239 37.500 9.41 0.00 43.02 2.29
3327 7083 4.613944 TGAACGTAGACGAAAGACAACAT 58.386 39.130 9.41 0.00 43.02 2.71
3328 7084 4.031418 TGAACGTAGACGAAAGACAACA 57.969 40.909 9.41 0.00 43.02 3.33
3329 7085 4.443394 ACATGAACGTAGACGAAAGACAAC 59.557 41.667 9.41 0.00 43.02 3.32
3330 7086 4.443063 CACATGAACGTAGACGAAAGACAA 59.557 41.667 9.41 0.00 43.02 3.18
3331 7087 3.978855 CACATGAACGTAGACGAAAGACA 59.021 43.478 9.41 2.18 43.02 3.41
3332 7088 3.979495 ACACATGAACGTAGACGAAAGAC 59.021 43.478 9.41 0.00 43.02 3.01
3333 7089 4.023450 AGACACATGAACGTAGACGAAAGA 60.023 41.667 9.41 0.00 43.02 2.52
3334 7090 4.227538 AGACACATGAACGTAGACGAAAG 58.772 43.478 9.41 0.00 43.02 2.62
3335 7091 4.233123 AGACACATGAACGTAGACGAAA 57.767 40.909 9.41 0.00 43.02 3.46
3336 7092 3.909776 AGACACATGAACGTAGACGAA 57.090 42.857 9.41 0.00 43.02 3.85
3337 7093 3.251487 TGAAGACACATGAACGTAGACGA 59.749 43.478 9.41 0.00 43.02 4.20
3338 7094 3.561503 TGAAGACACATGAACGTAGACG 58.438 45.455 0.00 0.00 46.33 4.18
3339 7095 4.795268 TCTGAAGACACATGAACGTAGAC 58.205 43.478 0.00 0.00 0.00 2.59
3340 7096 5.644977 ATCTGAAGACACATGAACGTAGA 57.355 39.130 0.00 0.00 0.00 2.59
3341 7097 5.062683 CCAATCTGAAGACACATGAACGTAG 59.937 44.000 0.00 0.00 0.00 3.51
3342 7098 4.929211 CCAATCTGAAGACACATGAACGTA 59.071 41.667 0.00 0.00 0.00 3.57
3343 7099 3.748048 CCAATCTGAAGACACATGAACGT 59.252 43.478 0.00 0.00 0.00 3.99
3344 7100 3.996363 TCCAATCTGAAGACACATGAACG 59.004 43.478 0.00 0.00 0.00 3.95
3345 7101 5.065731 GGATCCAATCTGAAGACACATGAAC 59.934 44.000 6.95 0.00 0.00 3.18
3346 7102 5.045359 AGGATCCAATCTGAAGACACATGAA 60.045 40.000 15.82 0.00 0.00 2.57
3347 7103 4.472470 AGGATCCAATCTGAAGACACATGA 59.528 41.667 15.82 0.00 0.00 3.07
3348 7104 4.778579 AGGATCCAATCTGAAGACACATG 58.221 43.478 15.82 0.00 0.00 3.21
3349 7105 5.435291 GAAGGATCCAATCTGAAGACACAT 58.565 41.667 15.82 0.00 0.00 3.21
3350 7106 4.323792 GGAAGGATCCAATCTGAAGACACA 60.324 45.833 15.82 0.00 45.79 3.72
3351 7107 4.195416 GGAAGGATCCAATCTGAAGACAC 58.805 47.826 15.82 0.00 45.79 3.67
3352 7108 4.494091 GGAAGGATCCAATCTGAAGACA 57.506 45.455 15.82 0.00 45.79 3.41
3364 7120 1.343069 AGCGTGGATAGGAAGGATCC 58.657 55.000 2.48 2.48 46.98 3.36
3365 7121 4.810191 ATTAGCGTGGATAGGAAGGATC 57.190 45.455 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.