Multiple sequence alignment - TraesCS6A01G301000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G301000 chr6A 100.000 2411 0 0 1 2411 534654583 534652173 0.000000e+00 4453.0
1 TraesCS6A01G301000 chr6A 92.388 959 63 5 751 1706 581810499 581809548 0.000000e+00 1358.0
2 TraesCS6A01G301000 chr6A 98.913 92 1 0 1898 1989 534652595 534652504 5.330000e-37 165.0
3 TraesCS6A01G301000 chr6A 98.913 92 1 0 1989 2080 534652686 534652595 5.330000e-37 165.0
4 TraesCS6A01G301000 chr2A 93.118 959 64 2 751 1707 394263666 394262708 0.000000e+00 1404.0
5 TraesCS6A01G301000 chr2A 92.108 963 72 4 751 1711 112624916 112623956 0.000000e+00 1354.0
6 TraesCS6A01G301000 chr2A 92.508 921 58 7 791 1707 63371321 63370408 0.000000e+00 1308.0
7 TraesCS6A01G301000 chr2A 91.758 364 23 4 1989 2345 42194752 42194389 1.290000e-137 499.0
8 TraesCS6A01G301000 chr2A 91.667 156 7 3 1840 1989 42194810 42194655 6.750000e-51 211.0
9 TraesCS6A01G301000 chr5A 93.605 907 50 4 801 1707 502281090 502280192 0.000000e+00 1347.0
10 TraesCS6A01G301000 chr5A 91.858 958 74 3 751 1707 460471389 460470435 0.000000e+00 1334.0
11 TraesCS6A01G301000 chr5A 93.311 897 47 6 812 1707 143849338 143850222 0.000000e+00 1312.0
12 TraesCS6A01G301000 chr5A 91.099 955 83 2 754 1707 665815214 665814261 0.000000e+00 1291.0
13 TraesCS6A01G301000 chr5A 84.776 335 30 7 482 798 399434638 399434969 1.390000e-82 316.0
14 TraesCS6A01G301000 chr5A 96.000 50 2 0 134 183 601608229 601608180 5.520000e-12 82.4
15 TraesCS6A01G301000 chr3A 91.953 932 70 4 778 1707 686455323 686456251 0.000000e+00 1301.0
16 TraesCS6A01G301000 chr3A 96.000 50 1 1 136 185 706776107 706776059 1.990000e-11 80.5
17 TraesCS6A01G301000 chr5B 83.346 1273 121 37 482 1707 599509562 599510790 0.000000e+00 1092.0
18 TraesCS6A01G301000 chr5B 91.858 393 20 6 1989 2369 532368449 532368841 2.730000e-149 538.0
19 TraesCS6A01G301000 chr5B 92.339 248 16 1 1745 1989 532368296 532368543 1.370000e-92 350.0
20 TraesCS6A01G301000 chr1A 85.743 982 98 20 751 1707 409955920 409956884 0.000000e+00 1000.0
21 TraesCS6A01G301000 chr1A 96.678 301 9 1 1989 2288 562731268 562731568 1.290000e-137 499.0
22 TraesCS6A01G301000 chr1A 98.058 103 2 0 1887 1989 562731257 562731359 1.900000e-41 180.0
23 TraesCS6A01G301000 chr1A 89.831 59 6 0 125 183 540324012 540324070 2.570000e-10 76.8
24 TraesCS6A01G301000 chr2B 80.211 950 127 38 482 1414 418651126 418650221 0.000000e+00 656.0
25 TraesCS6A01G301000 chr2B 88.636 132 13 1 2 133 639927490 639927619 2.480000e-35 159.0
26 TraesCS6A01G301000 chr2B 83.969 131 19 1 482 612 418655307 418655179 9.050000e-25 124.0
27 TraesCS6A01G301000 chr2B 82.443 131 21 1 482 612 418659486 418659358 1.960000e-21 113.0
28 TraesCS6A01G301000 chr7A 93.275 342 22 1 2019 2359 690007550 690007209 9.950000e-139 503.0
29 TraesCS6A01G301000 chr7A 94.531 256 14 0 2115 2370 92447479 92447224 1.740000e-106 396.0
30 TraesCS6A01G301000 chr7A 94.758 248 10 1 1745 1989 92456699 92456452 1.350000e-102 383.0
31 TraesCS6A01G301000 chr7A 95.556 135 2 2 1989 2119 92456546 92456412 1.880000e-51 213.0
32 TraesCS6A01G301000 chr7A 98.387 62 1 0 1928 1989 690007550 690007489 2.530000e-20 110.0
33 TraesCS6A01G301000 chr4B 82.622 328 30 12 480 785 605505231 605504909 5.110000e-67 265.0
34 TraesCS6A01G301000 chr4B 87.970 133 12 4 1 133 450122818 450122690 1.150000e-33 154.0
35 TraesCS6A01G301000 chr7B 90.226 133 11 1 1 133 695503200 695503330 3.190000e-39 172.0
36 TraesCS6A01G301000 chr7B 91.935 62 5 0 124 185 683164921 683164860 1.190000e-13 87.9
37 TraesCS6A01G301000 chr4A 89.394 132 12 1 2 133 714441767 714441638 5.330000e-37 165.0
38 TraesCS6A01G301000 chr4A 97.674 43 1 0 138 180 142446720 142446678 9.240000e-10 75.0
39 TraesCS6A01G301000 chr3B 89.394 132 12 1 2 133 585793027 585793156 5.330000e-37 165.0
40 TraesCS6A01G301000 chr3B 94.231 52 2 1 137 188 766658873 766658823 7.150000e-11 78.7
41 TraesCS6A01G301000 chr3D 88.722 133 12 2 1 133 87926141 87926012 2.480000e-35 159.0
42 TraesCS6A01G301000 chr4D 87.970 133 13 2 1 133 117421332 117421203 1.150000e-33 154.0
43 TraesCS6A01G301000 chr1B 87.970 133 13 2 1 133 638797410 638797539 1.150000e-33 154.0
44 TraesCS6A01G301000 chrUn 87.313 134 14 2 1 133 87983257 87983388 1.490000e-32 150.0
45 TraesCS6A01G301000 chr2D 88.525 61 5 2 124 183 558147216 558147275 3.320000e-09 73.1
46 TraesCS6A01G301000 chr6B 82.500 80 12 2 103 180 204337301 204337380 4.300000e-08 69.4
47 TraesCS6A01G301000 chr1D 82.278 79 12 2 104 180 476706508 476706586 1.550000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G301000 chr6A 534652173 534654583 2410 True 1594.333333 4453 99.275333 1 2411 3 chr6A.!!$R2 2410
1 TraesCS6A01G301000 chr6A 581809548 581810499 951 True 1358.000000 1358 92.388000 751 1706 1 chr6A.!!$R1 955
2 TraesCS6A01G301000 chr2A 394262708 394263666 958 True 1404.000000 1404 93.118000 751 1707 1 chr2A.!!$R3 956
3 TraesCS6A01G301000 chr2A 112623956 112624916 960 True 1354.000000 1354 92.108000 751 1711 1 chr2A.!!$R2 960
4 TraesCS6A01G301000 chr2A 63370408 63371321 913 True 1308.000000 1308 92.508000 791 1707 1 chr2A.!!$R1 916
5 TraesCS6A01G301000 chr5A 502280192 502281090 898 True 1347.000000 1347 93.605000 801 1707 1 chr5A.!!$R2 906
6 TraesCS6A01G301000 chr5A 460470435 460471389 954 True 1334.000000 1334 91.858000 751 1707 1 chr5A.!!$R1 956
7 TraesCS6A01G301000 chr5A 143849338 143850222 884 False 1312.000000 1312 93.311000 812 1707 1 chr5A.!!$F1 895
8 TraesCS6A01G301000 chr5A 665814261 665815214 953 True 1291.000000 1291 91.099000 754 1707 1 chr5A.!!$R4 953
9 TraesCS6A01G301000 chr3A 686455323 686456251 928 False 1301.000000 1301 91.953000 778 1707 1 chr3A.!!$F1 929
10 TraesCS6A01G301000 chr5B 599509562 599510790 1228 False 1092.000000 1092 83.346000 482 1707 1 chr5B.!!$F1 1225
11 TraesCS6A01G301000 chr5B 532368296 532368841 545 False 444.000000 538 92.098500 1745 2369 2 chr5B.!!$F2 624
12 TraesCS6A01G301000 chr1A 409955920 409956884 964 False 1000.000000 1000 85.743000 751 1707 1 chr1A.!!$F1 956
13 TraesCS6A01G301000 chr2B 418650221 418651126 905 True 656.000000 656 80.211000 482 1414 1 chr2B.!!$R1 932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 270 0.032678 AGATTATCGAGCTGGCCGTG 59.967 55.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2060 2169 0.110295 TGGGTTGATGGAGTGTGTGG 59.89 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 3.340814 AGACATGGTTTAGAGTGCAGG 57.659 47.619 0.00 0.00 0.00 4.85
70 71 2.639839 AGACATGGTTTAGAGTGCAGGT 59.360 45.455 0.00 0.00 0.00 4.00
71 72 3.073062 AGACATGGTTTAGAGTGCAGGTT 59.927 43.478 0.00 0.00 0.00 3.50
72 73 3.412386 ACATGGTTTAGAGTGCAGGTTC 58.588 45.455 0.00 0.00 0.00 3.62
73 74 3.181445 ACATGGTTTAGAGTGCAGGTTCA 60.181 43.478 0.00 0.00 0.00 3.18
74 75 2.846193 TGGTTTAGAGTGCAGGTTCAC 58.154 47.619 0.00 0.00 37.24 3.18
76 77 3.118038 TGGTTTAGAGTGCAGGTTCACTT 60.118 43.478 0.00 0.00 46.40 3.16
77 78 4.101898 TGGTTTAGAGTGCAGGTTCACTTA 59.898 41.667 0.00 0.00 46.40 2.24
78 79 5.221843 TGGTTTAGAGTGCAGGTTCACTTAT 60.222 40.000 0.00 0.00 46.40 1.73
79 80 5.705905 GGTTTAGAGTGCAGGTTCACTTATT 59.294 40.000 0.00 0.00 46.40 1.40
80 81 6.206829 GGTTTAGAGTGCAGGTTCACTTATTT 59.793 38.462 0.00 0.00 46.40 1.40
81 82 7.255486 GGTTTAGAGTGCAGGTTCACTTATTTT 60.255 37.037 0.00 0.00 46.40 1.82
82 83 5.695851 AGAGTGCAGGTTCACTTATTTTG 57.304 39.130 0.00 0.00 46.40 2.44
83 84 4.022849 AGAGTGCAGGTTCACTTATTTTGC 60.023 41.667 0.00 0.00 46.40 3.68
84 85 3.891366 AGTGCAGGTTCACTTATTTTGCT 59.109 39.130 0.00 0.00 44.26 3.91
85 86 4.022849 AGTGCAGGTTCACTTATTTTGCTC 60.023 41.667 0.00 0.00 44.26 4.26
86 87 3.255642 TGCAGGTTCACTTATTTTGCTCC 59.744 43.478 0.00 0.00 0.00 4.70
87 88 3.670627 GCAGGTTCACTTATTTTGCTCCG 60.671 47.826 0.00 0.00 0.00 4.63
88 89 3.502211 CAGGTTCACTTATTTTGCTCCGT 59.498 43.478 0.00 0.00 0.00 4.69
89 90 4.693566 CAGGTTCACTTATTTTGCTCCGTA 59.306 41.667 0.00 0.00 0.00 4.02
90 91 5.354234 CAGGTTCACTTATTTTGCTCCGTAT 59.646 40.000 0.00 0.00 0.00 3.06
91 92 5.354234 AGGTTCACTTATTTTGCTCCGTATG 59.646 40.000 0.00 0.00 0.00 2.39
92 93 5.123344 GGTTCACTTATTTTGCTCCGTATGT 59.877 40.000 0.00 0.00 0.00 2.29
93 94 6.314400 GGTTCACTTATTTTGCTCCGTATGTA 59.686 38.462 0.00 0.00 0.00 2.29
94 95 7.148373 GGTTCACTTATTTTGCTCCGTATGTAA 60.148 37.037 0.00 0.00 0.00 2.41
95 96 8.395633 GTTCACTTATTTTGCTCCGTATGTAAT 58.604 33.333 0.00 0.00 0.00 1.89
96 97 8.500753 TCACTTATTTTGCTCCGTATGTAATT 57.499 30.769 0.00 0.00 0.00 1.40
97 98 8.952278 TCACTTATTTTGCTCCGTATGTAATTT 58.048 29.630 0.00 0.00 0.00 1.82
98 99 9.221775 CACTTATTTTGCTCCGTATGTAATTTC 57.778 33.333 0.00 0.00 0.00 2.17
99 100 9.174166 ACTTATTTTGCTCCGTATGTAATTTCT 57.826 29.630 0.00 0.00 0.00 2.52
177 178 9.780186 AAGATTTATATTTAGGAACGGAGGAAG 57.220 33.333 0.00 0.00 0.00 3.46
178 179 8.935741 AGATTTATATTTAGGAACGGAGGAAGT 58.064 33.333 0.00 0.00 0.00 3.01
180 181 9.993454 ATTTATATTTAGGAACGGAGGAAGTAC 57.007 33.333 0.00 0.00 0.00 2.73
181 182 8.537728 TTATATTTAGGAACGGAGGAAGTACA 57.462 34.615 0.00 0.00 0.00 2.90
182 183 5.952347 ATTTAGGAACGGAGGAAGTACAT 57.048 39.130 0.00 0.00 0.00 2.29
183 184 8.716674 ATATTTAGGAACGGAGGAAGTACATA 57.283 34.615 0.00 0.00 0.00 2.29
184 185 6.461110 TTTAGGAACGGAGGAAGTACATAG 57.539 41.667 0.00 0.00 0.00 2.23
185 186 3.978610 AGGAACGGAGGAAGTACATAGT 58.021 45.455 0.00 0.00 0.00 2.12
186 187 5.121380 AGGAACGGAGGAAGTACATAGTA 57.879 43.478 0.00 0.00 0.00 1.82
187 188 5.131784 AGGAACGGAGGAAGTACATAGTAG 58.868 45.833 0.00 0.00 0.00 2.57
188 189 4.886489 GGAACGGAGGAAGTACATAGTAGT 59.114 45.833 0.00 0.00 0.00 2.73
189 190 5.221009 GGAACGGAGGAAGTACATAGTAGTG 60.221 48.000 0.00 0.00 0.00 2.74
190 191 4.853007 ACGGAGGAAGTACATAGTAGTGT 58.147 43.478 0.00 0.00 36.13 3.55
191 192 4.639310 ACGGAGGAAGTACATAGTAGTGTG 59.361 45.833 0.00 0.00 33.62 3.82
192 193 4.639310 CGGAGGAAGTACATAGTAGTGTGT 59.361 45.833 5.23 5.23 33.62 3.72
193 194 5.819379 CGGAGGAAGTACATAGTAGTGTGTA 59.181 44.000 3.23 3.23 33.62 2.90
194 195 6.485984 CGGAGGAAGTACATAGTAGTGTGTAT 59.514 42.308 10.01 0.00 33.35 2.29
195 196 7.307870 CGGAGGAAGTACATAGTAGTGTGTATC 60.308 44.444 10.01 5.30 33.35 2.24
196 197 7.720515 GGAGGAAGTACATAGTAGTGTGTATCT 59.279 40.741 10.01 6.97 33.35 1.98
197 198 9.775854 GAGGAAGTACATAGTAGTGTGTATCTA 57.224 37.037 10.01 0.00 33.35 1.98
205 206 9.740710 ACATAGTAGTGTGTATCTATCTATGCA 57.259 33.333 0.00 0.00 35.70 3.96
208 209 8.116651 AGTAGTGTGTATCTATCTATGCAAGG 57.883 38.462 0.00 0.00 0.00 3.61
209 210 6.352016 AGTGTGTATCTATCTATGCAAGGG 57.648 41.667 0.00 0.00 0.00 3.95
210 211 6.077993 AGTGTGTATCTATCTATGCAAGGGA 58.922 40.000 0.00 0.00 0.00 4.20
211 212 6.728164 AGTGTGTATCTATCTATGCAAGGGAT 59.272 38.462 0.00 0.00 0.00 3.85
212 213 7.895962 AGTGTGTATCTATCTATGCAAGGGATA 59.104 37.037 0.00 0.00 0.00 2.59
213 214 7.976734 GTGTGTATCTATCTATGCAAGGGATAC 59.023 40.741 0.00 4.80 35.55 2.24
214 215 7.148069 TGTGTATCTATCTATGCAAGGGATACG 60.148 40.741 0.00 0.00 36.50 3.06
215 216 4.720649 TCTATCTATGCAAGGGATACGC 57.279 45.455 0.00 0.00 37.60 4.42
216 217 2.370281 ATCTATGCAAGGGATACGCG 57.630 50.000 3.53 3.53 37.60 6.01
217 218 1.037493 TCTATGCAAGGGATACGCGT 58.963 50.000 19.17 19.17 37.60 6.01
218 219 1.000607 TCTATGCAAGGGATACGCGTC 60.001 52.381 18.63 0.87 37.60 5.19
219 220 0.747852 TATGCAAGGGATACGCGTCA 59.252 50.000 18.63 4.98 37.60 4.35
220 221 0.107897 ATGCAAGGGATACGCGTCAA 60.108 50.000 18.63 0.00 37.60 3.18
221 222 0.107897 TGCAAGGGATACGCGTCAAT 60.108 50.000 18.63 3.99 37.60 2.57
222 223 0.304705 GCAAGGGATACGCGTCAATG 59.695 55.000 18.63 9.00 37.60 2.82
223 224 1.934589 CAAGGGATACGCGTCAATGA 58.065 50.000 18.63 0.00 37.60 2.57
224 225 2.483876 CAAGGGATACGCGTCAATGAT 58.516 47.619 18.63 2.01 37.60 2.45
225 226 2.872245 CAAGGGATACGCGTCAATGATT 59.128 45.455 18.63 1.90 37.60 2.57
226 227 4.055360 CAAGGGATACGCGTCAATGATTA 58.945 43.478 18.63 0.00 37.60 1.75
227 228 3.914312 AGGGATACGCGTCAATGATTAG 58.086 45.455 18.63 0.00 37.60 1.73
228 229 2.993899 GGGATACGCGTCAATGATTAGG 59.006 50.000 18.63 0.00 37.60 2.69
229 230 3.305813 GGGATACGCGTCAATGATTAGGA 60.306 47.826 18.63 0.00 37.60 2.94
230 231 4.495422 GGATACGCGTCAATGATTAGGAT 58.505 43.478 18.63 0.00 0.00 3.24
231 232 4.327357 GGATACGCGTCAATGATTAGGATG 59.673 45.833 18.63 0.00 0.00 3.51
232 233 2.483876 ACGCGTCAATGATTAGGATGG 58.516 47.619 5.58 0.00 0.00 3.51
233 234 2.102420 ACGCGTCAATGATTAGGATGGA 59.898 45.455 5.58 0.00 0.00 3.41
234 235 3.130633 CGCGTCAATGATTAGGATGGAA 58.869 45.455 0.00 0.00 0.00 3.53
235 236 3.748048 CGCGTCAATGATTAGGATGGAAT 59.252 43.478 0.00 0.00 0.00 3.01
236 237 4.377738 CGCGTCAATGATTAGGATGGAATG 60.378 45.833 0.00 0.00 0.00 2.67
237 238 4.083110 GCGTCAATGATTAGGATGGAATGG 60.083 45.833 0.00 0.00 0.00 3.16
238 239 5.065914 CGTCAATGATTAGGATGGAATGGT 58.934 41.667 0.00 0.00 0.00 3.55
239 240 5.532406 CGTCAATGATTAGGATGGAATGGTT 59.468 40.000 0.00 0.00 0.00 3.67
240 241 6.039717 CGTCAATGATTAGGATGGAATGGTTT 59.960 38.462 0.00 0.00 0.00 3.27
241 242 7.205297 GTCAATGATTAGGATGGAATGGTTTG 58.795 38.462 0.00 0.00 0.00 2.93
242 243 6.324512 TCAATGATTAGGATGGAATGGTTTGG 59.675 38.462 0.00 0.00 0.00 3.28
243 244 5.205517 TGATTAGGATGGAATGGTTTGGT 57.794 39.130 0.00 0.00 0.00 3.67
244 245 6.334378 TGATTAGGATGGAATGGTTTGGTA 57.666 37.500 0.00 0.00 0.00 3.25
245 246 6.736581 TGATTAGGATGGAATGGTTTGGTAA 58.263 36.000 0.00 0.00 0.00 2.85
246 247 6.833416 TGATTAGGATGGAATGGTTTGGTAAG 59.167 38.462 0.00 0.00 0.00 2.34
247 248 4.946160 AGGATGGAATGGTTTGGTAAGA 57.054 40.909 0.00 0.00 0.00 2.10
248 249 5.269554 AGGATGGAATGGTTTGGTAAGAA 57.730 39.130 0.00 0.00 0.00 2.52
249 250 5.650283 AGGATGGAATGGTTTGGTAAGAAA 58.350 37.500 0.00 0.00 0.00 2.52
250 251 6.081356 AGGATGGAATGGTTTGGTAAGAAAA 58.919 36.000 0.00 0.00 0.00 2.29
251 252 6.211384 AGGATGGAATGGTTTGGTAAGAAAAG 59.789 38.462 0.00 0.00 0.00 2.27
252 253 6.210584 GGATGGAATGGTTTGGTAAGAAAAGA 59.789 38.462 0.00 0.00 0.00 2.52
253 254 7.093333 GGATGGAATGGTTTGGTAAGAAAAGAT 60.093 37.037 0.00 0.00 0.00 2.40
254 255 7.610580 TGGAATGGTTTGGTAAGAAAAGATT 57.389 32.000 0.00 0.00 0.00 2.40
255 256 8.713708 TGGAATGGTTTGGTAAGAAAAGATTA 57.286 30.769 0.00 0.00 0.00 1.75
256 257 9.320295 TGGAATGGTTTGGTAAGAAAAGATTAT 57.680 29.630 0.00 0.00 0.00 1.28
257 258 9.803315 GGAATGGTTTGGTAAGAAAAGATTATC 57.197 33.333 0.00 0.00 0.00 1.75
258 259 9.503427 GAATGGTTTGGTAAGAAAAGATTATCG 57.497 33.333 0.00 0.00 0.00 2.92
259 260 8.801882 ATGGTTTGGTAAGAAAAGATTATCGA 57.198 30.769 0.00 0.00 0.00 3.59
260 261 8.263940 TGGTTTGGTAAGAAAAGATTATCGAG 57.736 34.615 0.00 0.00 0.00 4.04
261 262 7.148306 TGGTTTGGTAAGAAAAGATTATCGAGC 60.148 37.037 0.00 0.00 0.00 5.03
262 263 7.065923 GGTTTGGTAAGAAAAGATTATCGAGCT 59.934 37.037 0.00 0.00 0.00 4.09
263 264 7.539712 TTGGTAAGAAAAGATTATCGAGCTG 57.460 36.000 0.00 0.00 0.00 4.24
264 265 6.049149 TGGTAAGAAAAGATTATCGAGCTGG 58.951 40.000 0.00 0.00 0.00 4.85
265 266 5.050023 GGTAAGAAAAGATTATCGAGCTGGC 60.050 44.000 0.00 0.00 0.00 4.85
266 267 3.471680 AGAAAAGATTATCGAGCTGGCC 58.528 45.455 0.00 0.00 0.00 5.36
267 268 1.871080 AAAGATTATCGAGCTGGCCG 58.129 50.000 0.00 0.00 0.00 6.13
268 269 0.753262 AAGATTATCGAGCTGGCCGT 59.247 50.000 0.00 0.00 0.00 5.68
269 270 0.032678 AGATTATCGAGCTGGCCGTG 59.967 55.000 0.00 0.00 0.00 4.94
270 271 1.560860 GATTATCGAGCTGGCCGTGC 61.561 60.000 12.03 12.03 0.00 5.34
271 272 2.310327 ATTATCGAGCTGGCCGTGCA 62.310 55.000 20.36 2.87 0.00 4.57
272 273 2.514510 TTATCGAGCTGGCCGTGCAA 62.515 55.000 20.36 7.76 0.00 4.08
273 274 2.310327 TATCGAGCTGGCCGTGCAAT 62.310 55.000 20.36 13.27 0.00 3.56
274 275 3.869272 CGAGCTGGCCGTGCAATC 61.869 66.667 20.36 10.50 0.00 2.67
275 276 2.747460 GAGCTGGCCGTGCAATCA 60.747 61.111 20.36 0.00 0.00 2.57
276 277 3.044059 GAGCTGGCCGTGCAATCAC 62.044 63.158 20.36 5.12 39.78 3.06
277 278 3.058160 GCTGGCCGTGCAATCACT 61.058 61.111 14.62 0.00 40.99 3.41
278 279 2.629656 GCTGGCCGTGCAATCACTT 61.630 57.895 14.62 0.00 40.99 3.16
279 280 1.959085 CTGGCCGTGCAATCACTTT 59.041 52.632 0.00 0.00 40.99 2.66
280 281 0.314935 CTGGCCGTGCAATCACTTTT 59.685 50.000 0.00 0.00 40.99 2.27
281 282 1.539388 CTGGCCGTGCAATCACTTTTA 59.461 47.619 0.00 0.00 40.99 1.52
282 283 1.268352 TGGCCGTGCAATCACTTTTAC 59.732 47.619 0.00 0.00 40.99 2.01
283 284 1.268352 GGCCGTGCAATCACTTTTACA 59.732 47.619 0.00 0.00 40.99 2.41
284 285 2.094752 GGCCGTGCAATCACTTTTACAT 60.095 45.455 0.00 0.00 40.99 2.29
285 286 2.916716 GCCGTGCAATCACTTTTACATG 59.083 45.455 0.00 0.00 40.99 3.21
286 287 3.611530 GCCGTGCAATCACTTTTACATGT 60.612 43.478 2.69 2.69 40.99 3.21
287 288 4.158384 CCGTGCAATCACTTTTACATGTC 58.842 43.478 0.00 0.00 40.99 3.06
288 289 4.320129 CCGTGCAATCACTTTTACATGTCA 60.320 41.667 0.00 0.00 40.99 3.58
289 290 5.211454 CGTGCAATCACTTTTACATGTCAA 58.789 37.500 0.00 0.00 40.99 3.18
290 291 5.115472 CGTGCAATCACTTTTACATGTCAAC 59.885 40.000 0.00 0.00 40.99 3.18
291 292 5.402270 GTGCAATCACTTTTACATGTCAACC 59.598 40.000 0.00 0.00 40.03 3.77
292 293 5.301551 TGCAATCACTTTTACATGTCAACCT 59.698 36.000 0.00 0.00 0.00 3.50
293 294 5.858581 GCAATCACTTTTACATGTCAACCTC 59.141 40.000 0.00 0.00 0.00 3.85
294 295 6.294176 GCAATCACTTTTACATGTCAACCTCT 60.294 38.462 0.00 0.00 0.00 3.69
295 296 7.651808 CAATCACTTTTACATGTCAACCTCTT 58.348 34.615 0.00 0.00 0.00 2.85
296 297 6.618287 TCACTTTTACATGTCAACCTCTTG 57.382 37.500 0.00 0.00 0.00 3.02
297 298 5.530915 TCACTTTTACATGTCAACCTCTTGG 59.469 40.000 0.00 0.00 39.83 3.61
298 299 4.278419 ACTTTTACATGTCAACCTCTTGGC 59.722 41.667 0.00 0.00 36.63 4.52
299 300 2.093306 TACATGTCAACCTCTTGGCG 57.907 50.000 0.00 0.00 34.42 5.69
300 301 0.396435 ACATGTCAACCTCTTGGCGA 59.604 50.000 0.00 0.00 34.42 5.54
301 302 0.798776 CATGTCAACCTCTTGGCGAC 59.201 55.000 0.00 0.00 34.42 5.19
302 303 0.670546 ATGTCAACCTCTTGGCGACG 60.671 55.000 0.00 0.00 40.18 5.12
303 304 1.300697 GTCAACCTCTTGGCGACGT 60.301 57.895 0.00 0.00 36.63 4.34
304 305 0.038892 GTCAACCTCTTGGCGACGTA 60.039 55.000 0.00 0.00 36.63 3.57
305 306 0.038892 TCAACCTCTTGGCGACGTAC 60.039 55.000 0.00 0.00 36.63 3.67
306 307 0.319211 CAACCTCTTGGCGACGTACA 60.319 55.000 0.00 0.00 36.63 2.90
307 308 0.606604 AACCTCTTGGCGACGTACAT 59.393 50.000 0.00 0.00 36.63 2.29
308 309 0.108804 ACCTCTTGGCGACGTACATG 60.109 55.000 0.00 0.00 36.63 3.21
309 310 0.108804 CCTCTTGGCGACGTACATGT 60.109 55.000 2.69 2.69 0.00 3.21
310 311 1.133598 CCTCTTGGCGACGTACATGTA 59.866 52.381 0.08 0.08 0.00 2.29
311 312 2.223735 CCTCTTGGCGACGTACATGTAT 60.224 50.000 9.18 0.00 0.00 2.29
312 313 2.789339 CTCTTGGCGACGTACATGTATG 59.211 50.000 21.12 21.12 0.00 2.39
313 314 1.858458 CTTGGCGACGTACATGTATGG 59.142 52.381 25.18 15.42 0.00 2.74
314 315 0.103390 TGGCGACGTACATGTATGGG 59.897 55.000 25.18 18.13 0.00 4.00
315 316 0.386476 GGCGACGTACATGTATGGGA 59.614 55.000 25.18 0.00 0.00 4.37
316 317 1.202440 GGCGACGTACATGTATGGGAA 60.202 52.381 25.18 0.00 0.00 3.97
317 318 1.856597 GCGACGTACATGTATGGGAAC 59.143 52.381 25.18 13.93 0.00 3.62
328 329 2.358125 TGGGAACATGCACGTCCG 60.358 61.111 0.00 0.00 33.40 4.79
329 330 3.124921 GGGAACATGCACGTCCGG 61.125 66.667 0.00 0.00 0.00 5.14
330 331 2.047655 GGAACATGCACGTCCGGA 60.048 61.111 0.00 0.00 0.00 5.14
331 332 2.100631 GGAACATGCACGTCCGGAG 61.101 63.158 3.06 1.12 0.00 4.63
332 333 1.374252 GAACATGCACGTCCGGAGT 60.374 57.895 3.06 1.90 0.00 3.85
333 334 0.108992 GAACATGCACGTCCGGAGTA 60.109 55.000 3.06 0.00 0.00 2.59
334 335 0.389426 AACATGCACGTCCGGAGTAC 60.389 55.000 3.06 0.43 0.00 2.73
335 336 1.518572 CATGCACGTCCGGAGTACC 60.519 63.158 3.06 0.00 0.00 3.34
336 337 1.681327 ATGCACGTCCGGAGTACCT 60.681 57.895 3.06 0.00 0.00 3.08
337 338 1.945354 ATGCACGTCCGGAGTACCTG 61.945 60.000 3.06 0.00 0.00 4.00
338 339 2.882876 CACGTCCGGAGTACCTGG 59.117 66.667 3.06 0.00 0.00 4.45
339 340 1.975407 CACGTCCGGAGTACCTGGT 60.975 63.158 3.06 4.05 33.72 4.00
340 341 1.975407 ACGTCCGGAGTACCTGGTG 60.975 63.158 3.06 0.00 33.72 4.17
341 342 1.975407 CGTCCGGAGTACCTGGTGT 60.975 63.158 3.06 0.00 33.72 4.16
342 343 1.590147 GTCCGGAGTACCTGGTGTG 59.410 63.158 3.06 0.00 33.72 3.82
343 344 1.154454 TCCGGAGTACCTGGTGTGT 59.846 57.895 10.23 0.00 33.72 3.72
344 345 0.896940 TCCGGAGTACCTGGTGTGTC 60.897 60.000 10.23 3.02 33.72 3.67
345 346 1.211969 CGGAGTACCTGGTGTGTCG 59.788 63.158 10.23 4.93 0.00 4.35
346 347 1.080025 GGAGTACCTGGTGTGTCGC 60.080 63.158 10.23 0.00 0.00 5.19
347 348 1.533469 GGAGTACCTGGTGTGTCGCT 61.533 60.000 10.23 0.00 0.00 4.93
348 349 0.109226 GAGTACCTGGTGTGTCGCTC 60.109 60.000 10.23 3.97 0.00 5.03
349 350 1.080025 GTACCTGGTGTGTCGCTCC 60.080 63.158 10.23 0.00 0.00 4.70
350 351 1.228769 TACCTGGTGTGTCGCTCCT 60.229 57.895 10.23 0.00 0.00 3.69
351 352 1.532604 TACCTGGTGTGTCGCTCCTG 61.533 60.000 10.23 5.41 0.00 3.86
352 353 2.737180 CTGGTGTGTCGCTCCTGT 59.263 61.111 6.10 0.00 0.00 4.00
353 354 1.069765 CTGGTGTGTCGCTCCTGTT 59.930 57.895 6.10 0.00 0.00 3.16
354 355 1.224069 CTGGTGTGTCGCTCCTGTTG 61.224 60.000 6.10 0.00 0.00 3.33
355 356 1.069090 GGTGTGTCGCTCCTGTTGA 59.931 57.895 0.00 0.00 0.00 3.18
356 357 0.320771 GGTGTGTCGCTCCTGTTGAT 60.321 55.000 0.00 0.00 0.00 2.57
357 358 1.071605 GTGTGTCGCTCCTGTTGATC 58.928 55.000 0.00 0.00 0.00 2.92
358 359 0.969149 TGTGTCGCTCCTGTTGATCT 59.031 50.000 0.00 0.00 0.00 2.75
359 360 1.337167 TGTGTCGCTCCTGTTGATCTG 60.337 52.381 0.00 0.00 0.00 2.90
360 361 0.390340 TGTCGCTCCTGTTGATCTGC 60.390 55.000 0.00 0.00 0.00 4.26
361 362 0.108424 GTCGCTCCTGTTGATCTGCT 60.108 55.000 0.00 0.00 0.00 4.24
362 363 0.174389 TCGCTCCTGTTGATCTGCTC 59.826 55.000 0.00 0.00 0.00 4.26
363 364 0.809241 CGCTCCTGTTGATCTGCTCC 60.809 60.000 0.00 0.00 0.00 4.70
364 365 0.809241 GCTCCTGTTGATCTGCTCCG 60.809 60.000 0.00 0.00 0.00 4.63
365 366 0.809241 CTCCTGTTGATCTGCTCCGC 60.809 60.000 0.00 0.00 0.00 5.54
366 367 1.078918 CCTGTTGATCTGCTCCGCA 60.079 57.895 0.00 0.00 36.92 5.69
367 368 1.364626 CCTGTTGATCTGCTCCGCAC 61.365 60.000 0.00 0.00 33.79 5.34
368 369 1.364626 CTGTTGATCTGCTCCGCACC 61.365 60.000 0.00 0.00 33.79 5.01
369 370 1.375908 GTTGATCTGCTCCGCACCA 60.376 57.895 0.00 0.00 33.79 4.17
370 371 1.078918 TTGATCTGCTCCGCACCAG 60.079 57.895 0.00 0.00 33.79 4.00
371 372 2.894387 GATCTGCTCCGCACCAGC 60.894 66.667 0.00 0.00 37.40 4.85
372 373 3.670637 GATCTGCTCCGCACCAGCA 62.671 63.158 1.62 1.62 44.80 4.41
381 382 2.501128 GCACCAGCAGCGGAGATA 59.499 61.111 9.87 0.00 41.58 1.98
382 383 1.153369 GCACCAGCAGCGGAGATAA 60.153 57.895 9.87 0.00 41.58 1.75
383 384 1.156645 GCACCAGCAGCGGAGATAAG 61.157 60.000 9.87 0.00 41.58 1.73
384 385 0.461548 CACCAGCAGCGGAGATAAGA 59.538 55.000 9.87 0.00 0.00 2.10
385 386 1.069823 CACCAGCAGCGGAGATAAGAT 59.930 52.381 9.87 0.00 0.00 2.40
386 387 2.297315 CACCAGCAGCGGAGATAAGATA 59.703 50.000 9.87 0.00 0.00 1.98
387 388 2.560542 ACCAGCAGCGGAGATAAGATAG 59.439 50.000 9.87 0.00 0.00 2.08
388 389 2.094286 CCAGCAGCGGAGATAAGATAGG 60.094 54.545 0.00 0.00 0.00 2.57
389 390 1.548269 AGCAGCGGAGATAAGATAGGC 59.452 52.381 0.00 0.00 0.00 3.93
390 391 1.273606 GCAGCGGAGATAAGATAGGCA 59.726 52.381 0.00 0.00 0.00 4.75
391 392 2.928731 GCAGCGGAGATAAGATAGGCAC 60.929 54.545 0.00 0.00 0.00 5.01
392 393 1.542030 AGCGGAGATAAGATAGGCACG 59.458 52.381 0.00 0.00 0.00 5.34
393 394 1.402984 GCGGAGATAAGATAGGCACGG 60.403 57.143 0.00 0.00 0.00 4.94
394 395 1.402984 CGGAGATAAGATAGGCACGGC 60.403 57.143 0.00 0.00 0.00 5.68
410 411 4.329545 GCCGGAGACAGCCCAACA 62.330 66.667 5.05 0.00 0.00 3.33
411 412 2.429930 CCGGAGACAGCCCAACAA 59.570 61.111 0.00 0.00 0.00 2.83
412 413 1.966451 CCGGAGACAGCCCAACAAC 60.966 63.158 0.00 0.00 0.00 3.32
413 414 1.966451 CGGAGACAGCCCAACAACC 60.966 63.158 0.00 0.00 0.00 3.77
414 415 1.456287 GGAGACAGCCCAACAACCT 59.544 57.895 0.00 0.00 0.00 3.50
415 416 0.690762 GGAGACAGCCCAACAACCTA 59.309 55.000 0.00 0.00 0.00 3.08
416 417 1.073284 GGAGACAGCCCAACAACCTAA 59.927 52.381 0.00 0.00 0.00 2.69
417 418 2.152016 GAGACAGCCCAACAACCTAAC 58.848 52.381 0.00 0.00 0.00 2.34
418 419 1.493022 AGACAGCCCAACAACCTAACA 59.507 47.619 0.00 0.00 0.00 2.41
419 420 2.092103 AGACAGCCCAACAACCTAACAA 60.092 45.455 0.00 0.00 0.00 2.83
420 421 2.028876 ACAGCCCAACAACCTAACAAC 58.971 47.619 0.00 0.00 0.00 3.32
421 422 2.306847 CAGCCCAACAACCTAACAACT 58.693 47.619 0.00 0.00 0.00 3.16
422 423 2.693074 CAGCCCAACAACCTAACAACTT 59.307 45.455 0.00 0.00 0.00 2.66
423 424 2.693074 AGCCCAACAACCTAACAACTTG 59.307 45.455 0.00 0.00 0.00 3.16
424 425 2.801699 GCCCAACAACCTAACAACTTGC 60.802 50.000 0.00 0.00 0.00 4.01
425 426 2.542824 CCCAACAACCTAACAACTTGCG 60.543 50.000 0.00 0.00 0.00 4.85
426 427 2.356382 CCAACAACCTAACAACTTGCGA 59.644 45.455 0.00 0.00 0.00 5.10
427 428 3.004315 CCAACAACCTAACAACTTGCGAT 59.996 43.478 0.00 0.00 0.00 4.58
428 429 4.214545 CCAACAACCTAACAACTTGCGATA 59.785 41.667 0.00 0.00 0.00 2.92
429 430 5.382303 CAACAACCTAACAACTTGCGATAG 58.618 41.667 0.00 0.00 0.00 2.08
442 443 1.858041 CGATAGCTGGCTCAATGCG 59.142 57.895 0.00 0.00 44.05 4.73
443 444 0.877649 CGATAGCTGGCTCAATGCGT 60.878 55.000 0.00 0.00 44.05 5.24
444 445 1.602920 CGATAGCTGGCTCAATGCGTA 60.603 52.381 0.00 0.00 44.05 4.42
445 446 2.064762 GATAGCTGGCTCAATGCGTAG 58.935 52.381 0.00 0.00 44.05 3.51
459 460 3.677960 CGTAGCTATCCATCCGACG 57.322 57.895 0.00 0.00 0.00 5.12
460 461 0.873054 CGTAGCTATCCATCCGACGT 59.127 55.000 0.00 0.00 0.00 4.34
461 462 1.266175 CGTAGCTATCCATCCGACGTT 59.734 52.381 0.00 0.00 0.00 3.99
462 463 2.664971 CGTAGCTATCCATCCGACGTTC 60.665 54.545 0.00 0.00 0.00 3.95
463 464 0.674534 AGCTATCCATCCGACGTTCC 59.325 55.000 0.00 0.00 0.00 3.62
464 465 0.319641 GCTATCCATCCGACGTTCCC 60.320 60.000 0.00 0.00 0.00 3.97
465 466 0.039437 CTATCCATCCGACGTTCCCG 60.039 60.000 0.00 0.00 40.83 5.14
466 467 2.079020 TATCCATCCGACGTTCCCGC 62.079 60.000 0.00 0.00 37.70 6.13
467 468 4.444838 CCATCCGACGTTCCCGCA 62.445 66.667 0.00 0.00 37.70 5.69
468 469 2.433491 CATCCGACGTTCCCGCAA 60.433 61.111 0.00 0.00 37.70 4.85
469 470 2.125673 ATCCGACGTTCCCGCAAG 60.126 61.111 0.00 0.00 37.70 4.01
528 529 2.304401 CGTGCGCGTGAGGTAAACA 61.304 57.895 12.43 0.00 0.00 2.83
533 534 1.218875 CGCGTGAGGTAAACACAGCA 61.219 55.000 0.00 0.00 37.50 4.41
540 541 7.038318 CGTGAGGTAAACACAGCATTTAGCA 62.038 44.000 8.79 0.00 40.73 3.49
592 610 4.038080 GGGAAAACCAGGCGCGTG 62.038 66.667 22.66 22.66 39.85 5.34
593 611 4.038080 GGAAAACCAGGCGCGTGG 62.038 66.667 39.63 39.63 44.01 4.94
594 612 4.038080 GAAAACCAGGCGCGTGGG 62.038 66.667 42.15 28.17 42.54 4.61
595 613 4.572571 AAAACCAGGCGCGTGGGA 62.573 61.111 42.15 0.00 42.54 4.37
596 614 4.572571 AAACCAGGCGCGTGGGAA 62.573 61.111 42.15 0.00 42.54 3.97
701 773 2.099405 CGCCTTCTCTTCTCCTCTTCT 58.901 52.381 0.00 0.00 0.00 2.85
703 775 3.697045 CGCCTTCTCTTCTCCTCTTCTTA 59.303 47.826 0.00 0.00 0.00 2.10
707 781 6.098266 GCCTTCTCTTCTCCTCTTCTTATCTT 59.902 42.308 0.00 0.00 0.00 2.40
713 787 6.438741 TCTTCTCCTCTTCTTATCTTTCTGCA 59.561 38.462 0.00 0.00 0.00 4.41
718 792 3.367932 TCTTCTTATCTTTCTGCAACGCG 59.632 43.478 3.53 3.53 0.00 6.01
719 793 1.393539 TCTTATCTTTCTGCAACGCGC 59.606 47.619 5.73 0.00 42.89 6.86
720 794 0.446222 TTATCTTTCTGCAACGCGCC 59.554 50.000 5.73 0.00 41.33 6.53
721 795 1.692148 TATCTTTCTGCAACGCGCCG 61.692 55.000 5.73 0.00 41.33 6.46
1135 1209 4.043100 TCCAGGAGGACGAGCGGA 62.043 66.667 0.00 0.00 39.61 5.54
1329 1403 2.945008 GTTCTTCATGCCGGATGATGAA 59.055 45.455 24.74 24.74 45.88 2.57
1500 1579 8.428186 TCGGATGTAAAATACCTTTGTATCAC 57.572 34.615 0.00 0.00 36.65 3.06
1716 1822 3.271250 GAGATGCTCCAAAAGGCCA 57.729 52.632 5.01 0.00 0.00 5.36
1717 1823 1.549203 GAGATGCTCCAAAAGGCCAA 58.451 50.000 5.01 0.00 0.00 4.52
1718 1824 1.895131 GAGATGCTCCAAAAGGCCAAA 59.105 47.619 5.01 0.00 0.00 3.28
1719 1825 1.897802 AGATGCTCCAAAAGGCCAAAG 59.102 47.619 5.01 0.00 0.00 2.77
1720 1826 1.895131 GATGCTCCAAAAGGCCAAAGA 59.105 47.619 5.01 0.00 0.00 2.52
1721 1827 1.039856 TGCTCCAAAAGGCCAAAGAC 58.960 50.000 5.01 0.00 0.00 3.01
1722 1828 0.039165 GCTCCAAAAGGCCAAAGACG 60.039 55.000 5.01 0.00 0.00 4.18
1723 1829 0.039165 CTCCAAAAGGCCAAAGACGC 60.039 55.000 5.01 0.00 0.00 5.19
1724 1830 0.753479 TCCAAAAGGCCAAAGACGCA 60.753 50.000 5.01 0.00 0.00 5.24
1725 1831 0.597377 CCAAAAGGCCAAAGACGCAC 60.597 55.000 5.01 0.00 0.00 5.34
1726 1832 0.934436 CAAAAGGCCAAAGACGCACG 60.934 55.000 5.01 0.00 0.00 5.34
1727 1833 2.677573 AAAAGGCCAAAGACGCACGC 62.678 55.000 5.01 0.00 0.00 5.34
1728 1834 4.626081 AGGCCAAAGACGCACGCT 62.626 61.111 5.01 0.00 0.00 5.07
1729 1835 4.090057 GGCCAAAGACGCACGCTC 62.090 66.667 0.00 0.00 0.00 5.03
1730 1836 3.345808 GCCAAAGACGCACGCTCA 61.346 61.111 0.00 0.00 0.00 4.26
1731 1837 2.892334 GCCAAAGACGCACGCTCAA 61.892 57.895 0.00 0.00 0.00 3.02
1732 1838 1.646540 CCAAAGACGCACGCTCAAA 59.353 52.632 0.00 0.00 0.00 2.69
1733 1839 0.657368 CCAAAGACGCACGCTCAAAC 60.657 55.000 0.00 0.00 0.00 2.93
1734 1840 0.986874 CAAAGACGCACGCTCAAACG 60.987 55.000 0.00 0.00 39.50 3.60
1735 1841 2.101209 AAAGACGCACGCTCAAACGG 62.101 55.000 0.00 0.00 37.37 4.44
1736 1842 4.072088 GACGCACGCTCAAACGGG 62.072 66.667 0.00 0.00 40.19 5.28
1740 1846 3.047877 CACGCTCAAACGGGGGAC 61.048 66.667 0.00 0.00 37.37 4.46
1778 1884 1.282875 CGGCATCGTCGAGCAGATA 59.717 57.895 15.35 0.00 29.41 1.98
1779 1885 0.317854 CGGCATCGTCGAGCAGATAA 60.318 55.000 15.35 0.00 29.41 1.75
1785 1891 1.469703 TCGTCGAGCAGATAAACGGAA 59.530 47.619 0.00 0.00 34.30 4.30
1825 1931 1.296392 CTGTGCCCTCGGTGATGAA 59.704 57.895 0.00 0.00 0.00 2.57
1845 1951 0.392706 AAAAGGAAGCCAAAAGGCCG 59.607 50.000 2.33 0.00 35.12 6.13
1848 1954 4.419939 GAAGCCAAAAGGCCGCGG 62.420 66.667 24.05 24.05 35.12 6.46
1874 1980 2.202932 ACCATGCGCTCGGATGAC 60.203 61.111 22.15 0.00 45.01 3.06
1919 2025 4.994201 TGCTGCGACCACGACGAC 62.994 66.667 0.00 0.00 42.66 4.34
1925 2031 4.671549 GACCACGACGACGACGCA 62.672 66.667 18.98 0.00 43.96 5.24
1926 2032 3.940975 GACCACGACGACGACGCAT 62.941 63.158 18.98 5.24 43.96 4.73
1982 2091 3.503363 GCTGCCGCACACTCCATC 61.503 66.667 0.00 0.00 35.78 3.51
1983 2092 2.046988 CTGCCGCACACTCCATCA 60.047 61.111 0.00 0.00 0.00 3.07
1984 2093 1.672030 CTGCCGCACACTCCATCAA 60.672 57.895 0.00 0.00 0.00 2.57
1985 2094 1.915614 CTGCCGCACACTCCATCAAC 61.916 60.000 0.00 0.00 0.00 3.18
1986 2095 2.690778 GCCGCACACTCCATCAACC 61.691 63.158 0.00 0.00 0.00 3.77
1987 2096 2.040544 CCGCACACTCCATCAACCC 61.041 63.158 0.00 0.00 0.00 4.11
1988 2097 1.302431 CGCACACTCCATCAACCCA 60.302 57.895 0.00 0.00 0.00 4.51
1989 2098 1.300971 CGCACACTCCATCAACCCAG 61.301 60.000 0.00 0.00 0.00 4.45
1990 2099 0.036732 GCACACTCCATCAACCCAGA 59.963 55.000 0.00 0.00 0.00 3.86
1991 2100 1.813513 CACACTCCATCAACCCAGAC 58.186 55.000 0.00 0.00 0.00 3.51
1992 2101 0.321671 ACACTCCATCAACCCAGACG 59.678 55.000 0.00 0.00 0.00 4.18
1993 2102 0.321671 CACTCCATCAACCCAGACGT 59.678 55.000 0.00 0.00 0.00 4.34
1994 2103 0.321671 ACTCCATCAACCCAGACGTG 59.678 55.000 0.00 0.00 0.00 4.49
1995 2104 1.003839 TCCATCAACCCAGACGTGC 60.004 57.895 0.00 0.00 0.00 5.34
1996 2105 1.003355 CCATCAACCCAGACGTGCT 60.003 57.895 0.00 0.00 0.00 4.40
1997 2106 1.300971 CCATCAACCCAGACGTGCTG 61.301 60.000 0.00 0.00 44.49 4.41
1998 2107 1.672356 ATCAACCCAGACGTGCTGC 60.672 57.895 0.00 0.00 43.50 5.25
1999 2108 3.716006 CAACCCAGACGTGCTGCG 61.716 66.667 0.00 0.00 43.50 5.18
2000 2109 3.923864 AACCCAGACGTGCTGCGA 61.924 61.111 0.00 0.00 43.50 5.10
2001 2110 4.664677 ACCCAGACGTGCTGCGAC 62.665 66.667 0.00 2.43 43.50 5.19
2003 2112 4.662961 CCAGACGTGCTGCGACCA 62.663 66.667 0.00 0.00 43.50 4.02
2004 2113 3.406361 CAGACGTGCTGCGACCAC 61.406 66.667 0.00 0.00 44.77 4.16
2009 2118 4.994201 GTGCTGCGACCACGACGA 62.994 66.667 0.00 0.00 42.66 4.20
2010 2119 4.994201 TGCTGCGACCACGACGAC 62.994 66.667 0.00 0.00 42.66 4.34
2012 2121 4.379143 CTGCGACCACGACGACGA 62.379 66.667 15.32 0.00 42.66 4.20
2013 2122 4.671549 TGCGACCACGACGACGAC 62.672 66.667 15.32 0.00 42.66 4.34
2016 2125 4.671549 GACCACGACGACGACGCA 62.672 66.667 18.98 0.00 43.96 5.24
2017 2126 3.940975 GACCACGACGACGACGCAT 62.941 63.158 18.98 5.24 43.96 4.73
2018 2127 3.532792 CCACGACGACGACGCATG 61.533 66.667 18.98 10.87 43.96 4.06
2019 2128 4.178255 CACGACGACGACGCATGC 62.178 66.667 18.98 7.91 43.96 4.06
2053 2162 3.819188 CGGAGCCTTCTTCCATGC 58.181 61.111 0.00 0.00 0.00 4.06
2054 2163 2.176273 CGGAGCCTTCTTCCATGCG 61.176 63.158 0.00 0.00 0.00 4.73
2055 2164 2.476320 GGAGCCTTCTTCCATGCGC 61.476 63.158 0.00 0.00 0.00 6.09
2056 2165 2.817423 GAGCCTTCTTCCATGCGCG 61.817 63.158 0.00 0.00 0.00 6.86
2057 2166 4.543084 GCCTTCTTCCATGCGCGC 62.543 66.667 27.26 27.26 0.00 6.86
2058 2167 2.821366 CCTTCTTCCATGCGCGCT 60.821 61.111 33.29 15.19 0.00 5.92
2059 2168 2.402388 CTTCTTCCATGCGCGCTG 59.598 61.111 33.29 25.26 0.00 5.18
2060 2169 3.729906 CTTCTTCCATGCGCGCTGC 62.730 63.158 33.29 15.63 46.70 5.25
2123 2233 1.961394 AGACTCAAGACTAACCGTGCA 59.039 47.619 0.00 0.00 0.00 4.57
2124 2234 2.563179 AGACTCAAGACTAACCGTGCAT 59.437 45.455 0.00 0.00 0.00 3.96
2135 2245 6.425114 AGACTAACCGTGCATATTGATTCATC 59.575 38.462 0.00 0.00 0.00 2.92
2164 2274 9.504710 TCTATTCTTCTTTTATCTTCTTCGTCG 57.495 33.333 0.00 0.00 0.00 5.12
2188 2298 5.292834 GTGCAGATCGAAGATTCAAAGATCA 59.707 40.000 13.74 0.00 45.12 2.92
2204 2314 0.679002 ATCAACAGCCAAGCGAGCAT 60.679 50.000 0.00 0.00 0.00 3.79
2299 2413 1.332997 GCCACATGTAGATGAAGCAGC 59.667 52.381 6.90 0.00 33.79 5.25
2303 2417 0.178767 ATGTAGATGAAGCAGCGGCA 59.821 50.000 12.44 0.00 44.61 5.69
2307 2421 1.136147 GATGAAGCAGCGGCAACAG 59.864 57.895 12.44 0.00 44.61 3.16
2395 2513 4.435436 CGGAGCTACGTGCAGCCA 62.435 66.667 11.15 0.00 45.94 4.75
2396 2514 2.047274 GGAGCTACGTGCAGCCAA 60.047 61.111 6.70 0.00 45.94 4.52
2397 2515 1.671054 GGAGCTACGTGCAGCCAAA 60.671 57.895 6.70 0.00 45.94 3.28
2398 2516 1.234615 GGAGCTACGTGCAGCCAAAA 61.235 55.000 6.70 0.00 45.94 2.44
2399 2517 0.166814 GAGCTACGTGCAGCCAAAAG 59.833 55.000 6.70 0.00 45.94 2.27
2400 2518 1.442688 GCTACGTGCAGCCAAAAGC 60.443 57.895 0.00 0.00 42.31 3.51
2409 2527 4.999939 GCCAAAAGCGTGCCGTGG 63.000 66.667 2.58 2.58 0.00 4.94
2410 2528 4.999939 CCAAAAGCGTGCCGTGGC 63.000 66.667 3.30 3.30 42.35 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.535335 CCTGCACTCTAAACCATGTCTATATAT 58.465 37.037 0.00 0.00 0.00 0.86
44 45 7.509318 ACCTGCACTCTAAACCATGTCTATATA 59.491 37.037 0.00 0.00 0.00 0.86
45 46 6.327626 ACCTGCACTCTAAACCATGTCTATAT 59.672 38.462 0.00 0.00 0.00 0.86
46 47 5.661312 ACCTGCACTCTAAACCATGTCTATA 59.339 40.000 0.00 0.00 0.00 1.31
47 48 4.471386 ACCTGCACTCTAAACCATGTCTAT 59.529 41.667 0.00 0.00 0.00 1.98
48 49 3.838317 ACCTGCACTCTAAACCATGTCTA 59.162 43.478 0.00 0.00 0.00 2.59
49 50 2.639839 ACCTGCACTCTAAACCATGTCT 59.360 45.455 0.00 0.00 0.00 3.41
50 51 3.059352 ACCTGCACTCTAAACCATGTC 57.941 47.619 0.00 0.00 0.00 3.06
51 52 3.181445 TGAACCTGCACTCTAAACCATGT 60.181 43.478 0.00 0.00 0.00 3.21
52 53 3.189287 GTGAACCTGCACTCTAAACCATG 59.811 47.826 0.00 0.00 35.91 3.66
53 54 3.073062 AGTGAACCTGCACTCTAAACCAT 59.927 43.478 0.00 0.00 45.54 3.55
54 55 2.438021 AGTGAACCTGCACTCTAAACCA 59.562 45.455 0.00 0.00 45.54 3.67
55 56 3.127425 AGTGAACCTGCACTCTAAACC 57.873 47.619 0.00 0.00 45.54 3.27
63 64 4.229876 GAGCAAAATAAGTGAACCTGCAC 58.770 43.478 0.00 0.00 39.05 4.57
64 65 3.255642 GGAGCAAAATAAGTGAACCTGCA 59.744 43.478 0.00 0.00 0.00 4.41
65 66 3.670627 CGGAGCAAAATAAGTGAACCTGC 60.671 47.826 0.00 0.00 0.00 4.85
66 67 3.502211 ACGGAGCAAAATAAGTGAACCTG 59.498 43.478 0.00 0.00 0.00 4.00
67 68 3.751518 ACGGAGCAAAATAAGTGAACCT 58.248 40.909 0.00 0.00 0.00 3.50
68 69 5.123344 ACATACGGAGCAAAATAAGTGAACC 59.877 40.000 0.00 0.00 0.00 3.62
69 70 6.178239 ACATACGGAGCAAAATAAGTGAAC 57.822 37.500 0.00 0.00 0.00 3.18
70 71 7.908827 TTACATACGGAGCAAAATAAGTGAA 57.091 32.000 0.00 0.00 0.00 3.18
71 72 8.500753 AATTACATACGGAGCAAAATAAGTGA 57.499 30.769 0.00 0.00 0.00 3.41
72 73 9.221775 GAAATTACATACGGAGCAAAATAAGTG 57.778 33.333 0.00 0.00 0.00 3.16
73 74 9.174166 AGAAATTACATACGGAGCAAAATAAGT 57.826 29.630 0.00 0.00 0.00 2.24
151 152 9.780186 CTTCCTCCGTTCCTAAATATAAATCTT 57.220 33.333 0.00 0.00 0.00 2.40
152 153 8.935741 ACTTCCTCCGTTCCTAAATATAAATCT 58.064 33.333 0.00 0.00 0.00 2.40
154 155 9.993454 GTACTTCCTCCGTTCCTAAATATAAAT 57.007 33.333 0.00 0.00 0.00 1.40
155 156 8.980596 TGTACTTCCTCCGTTCCTAAATATAAA 58.019 33.333 0.00 0.00 0.00 1.40
156 157 8.537728 TGTACTTCCTCCGTTCCTAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
157 158 8.716674 ATGTACTTCCTCCGTTCCTAAATATA 57.283 34.615 0.00 0.00 0.00 0.86
158 159 7.613551 ATGTACTTCCTCCGTTCCTAAATAT 57.386 36.000 0.00 0.00 0.00 1.28
159 160 7.781693 ACTATGTACTTCCTCCGTTCCTAAATA 59.218 37.037 0.00 0.00 0.00 1.40
160 161 5.952347 ATGTACTTCCTCCGTTCCTAAAT 57.048 39.130 0.00 0.00 0.00 1.40
161 162 5.954150 ACTATGTACTTCCTCCGTTCCTAAA 59.046 40.000 0.00 0.00 0.00 1.85
162 163 5.513233 ACTATGTACTTCCTCCGTTCCTAA 58.487 41.667 0.00 0.00 0.00 2.69
163 164 5.121380 ACTATGTACTTCCTCCGTTCCTA 57.879 43.478 0.00 0.00 0.00 2.94
164 165 3.978610 ACTATGTACTTCCTCCGTTCCT 58.021 45.455 0.00 0.00 0.00 3.36
165 166 4.886489 ACTACTATGTACTTCCTCCGTTCC 59.114 45.833 0.00 0.00 0.00 3.62
166 167 5.356470 ACACTACTATGTACTTCCTCCGTTC 59.644 44.000 0.00 0.00 0.00 3.95
167 168 5.125097 CACACTACTATGTACTTCCTCCGTT 59.875 44.000 0.00 0.00 0.00 4.44
168 169 4.639310 CACACTACTATGTACTTCCTCCGT 59.361 45.833 0.00 0.00 0.00 4.69
169 170 4.639310 ACACACTACTATGTACTTCCTCCG 59.361 45.833 0.00 0.00 0.00 4.63
170 171 7.720515 AGATACACACTACTATGTACTTCCTCC 59.279 40.741 0.00 0.00 34.24 4.30
171 172 8.680039 AGATACACACTACTATGTACTTCCTC 57.320 38.462 0.00 0.00 34.24 3.71
179 180 9.740710 TGCATAGATAGATACACACTACTATGT 57.259 33.333 0.00 0.00 36.24 2.29
182 183 9.232473 CCTTGCATAGATAGATACACACTACTA 57.768 37.037 0.00 0.00 0.00 1.82
183 184 7.177568 CCCTTGCATAGATAGATACACACTACT 59.822 40.741 0.00 0.00 0.00 2.57
184 185 7.176865 TCCCTTGCATAGATAGATACACACTAC 59.823 40.741 0.00 0.00 0.00 2.73
185 186 7.238710 TCCCTTGCATAGATAGATACACACTA 58.761 38.462 0.00 0.00 0.00 2.74
186 187 6.077993 TCCCTTGCATAGATAGATACACACT 58.922 40.000 0.00 0.00 0.00 3.55
187 188 6.346477 TCCCTTGCATAGATAGATACACAC 57.654 41.667 0.00 0.00 0.00 3.82
188 189 7.148069 CGTATCCCTTGCATAGATAGATACACA 60.148 40.741 19.00 0.00 34.37 3.72
189 190 7.197017 CGTATCCCTTGCATAGATAGATACAC 58.803 42.308 19.00 6.80 34.37 2.90
190 191 6.183360 GCGTATCCCTTGCATAGATAGATACA 60.183 42.308 19.00 0.00 34.37 2.29
191 192 6.210078 GCGTATCCCTTGCATAGATAGATAC 58.790 44.000 0.00 5.70 33.00 2.24
192 193 5.008712 CGCGTATCCCTTGCATAGATAGATA 59.991 44.000 0.00 0.00 0.00 1.98
193 194 4.202060 CGCGTATCCCTTGCATAGATAGAT 60.202 45.833 0.00 0.00 0.00 1.98
194 195 3.128764 CGCGTATCCCTTGCATAGATAGA 59.871 47.826 0.00 0.00 0.00 1.98
195 196 3.119459 ACGCGTATCCCTTGCATAGATAG 60.119 47.826 11.67 0.00 0.00 2.08
196 197 2.823747 ACGCGTATCCCTTGCATAGATA 59.176 45.455 11.67 0.00 0.00 1.98
197 198 1.618837 ACGCGTATCCCTTGCATAGAT 59.381 47.619 11.67 0.00 0.00 1.98
198 199 1.000607 GACGCGTATCCCTTGCATAGA 60.001 52.381 13.97 0.00 0.00 1.98
199 200 1.269569 TGACGCGTATCCCTTGCATAG 60.270 52.381 13.97 0.00 0.00 2.23
200 201 0.747852 TGACGCGTATCCCTTGCATA 59.252 50.000 13.97 0.00 0.00 3.14
201 202 0.107897 TTGACGCGTATCCCTTGCAT 60.108 50.000 13.97 0.00 0.00 3.96
202 203 0.107897 ATTGACGCGTATCCCTTGCA 60.108 50.000 13.97 0.00 0.00 4.08
203 204 0.304705 CATTGACGCGTATCCCTTGC 59.695 55.000 13.97 0.00 0.00 4.01
204 205 1.934589 TCATTGACGCGTATCCCTTG 58.065 50.000 13.97 4.71 0.00 3.61
205 206 2.910688 ATCATTGACGCGTATCCCTT 57.089 45.000 13.97 0.00 0.00 3.95
206 207 2.910688 AATCATTGACGCGTATCCCT 57.089 45.000 13.97 0.00 0.00 4.20
207 208 2.993899 CCTAATCATTGACGCGTATCCC 59.006 50.000 13.97 0.00 0.00 3.85
208 209 3.909430 TCCTAATCATTGACGCGTATCC 58.091 45.455 13.97 0.00 0.00 2.59
209 210 4.327357 CCATCCTAATCATTGACGCGTATC 59.673 45.833 13.97 0.00 0.00 2.24
210 211 4.021456 TCCATCCTAATCATTGACGCGTAT 60.021 41.667 13.97 0.00 0.00 3.06
211 212 3.319689 TCCATCCTAATCATTGACGCGTA 59.680 43.478 13.97 0.00 0.00 4.42
212 213 2.102420 TCCATCCTAATCATTGACGCGT 59.898 45.455 13.85 13.85 0.00 6.01
213 214 2.754472 TCCATCCTAATCATTGACGCG 58.246 47.619 3.53 3.53 0.00 6.01
214 215 4.083110 CCATTCCATCCTAATCATTGACGC 60.083 45.833 0.00 0.00 0.00 5.19
215 216 5.065914 ACCATTCCATCCTAATCATTGACG 58.934 41.667 0.00 0.00 0.00 4.35
216 217 6.966534 AACCATTCCATCCTAATCATTGAC 57.033 37.500 0.00 0.00 0.00 3.18
217 218 6.324512 CCAAACCATTCCATCCTAATCATTGA 59.675 38.462 0.00 0.00 0.00 2.57
218 219 6.098695 ACCAAACCATTCCATCCTAATCATTG 59.901 38.462 0.00 0.00 0.00 2.82
219 220 6.204555 ACCAAACCATTCCATCCTAATCATT 58.795 36.000 0.00 0.00 0.00 2.57
220 221 5.780731 ACCAAACCATTCCATCCTAATCAT 58.219 37.500 0.00 0.00 0.00 2.45
221 222 5.205517 ACCAAACCATTCCATCCTAATCA 57.794 39.130 0.00 0.00 0.00 2.57
222 223 7.060421 TCTTACCAAACCATTCCATCCTAATC 58.940 38.462 0.00 0.00 0.00 1.75
223 224 6.980577 TCTTACCAAACCATTCCATCCTAAT 58.019 36.000 0.00 0.00 0.00 1.73
224 225 6.395780 TCTTACCAAACCATTCCATCCTAA 57.604 37.500 0.00 0.00 0.00 2.69
225 226 6.395780 TTCTTACCAAACCATTCCATCCTA 57.604 37.500 0.00 0.00 0.00 2.94
226 227 4.946160 TCTTACCAAACCATTCCATCCT 57.054 40.909 0.00 0.00 0.00 3.24
227 228 5.993748 TTTCTTACCAAACCATTCCATCC 57.006 39.130 0.00 0.00 0.00 3.51
228 229 7.227049 TCTTTTCTTACCAAACCATTCCATC 57.773 36.000 0.00 0.00 0.00 3.51
229 230 7.797121 ATCTTTTCTTACCAAACCATTCCAT 57.203 32.000 0.00 0.00 0.00 3.41
230 231 7.610580 AATCTTTTCTTACCAAACCATTCCA 57.389 32.000 0.00 0.00 0.00 3.53
231 232 9.803315 GATAATCTTTTCTTACCAAACCATTCC 57.197 33.333 0.00 0.00 0.00 3.01
232 233 9.503427 CGATAATCTTTTCTTACCAAACCATTC 57.497 33.333 0.00 0.00 0.00 2.67
233 234 9.238368 TCGATAATCTTTTCTTACCAAACCATT 57.762 29.630 0.00 0.00 0.00 3.16
234 235 8.801882 TCGATAATCTTTTCTTACCAAACCAT 57.198 30.769 0.00 0.00 0.00 3.55
235 236 7.148306 GCTCGATAATCTTTTCTTACCAAACCA 60.148 37.037 0.00 0.00 0.00 3.67
236 237 7.065923 AGCTCGATAATCTTTTCTTACCAAACC 59.934 37.037 0.00 0.00 0.00 3.27
237 238 7.905493 CAGCTCGATAATCTTTTCTTACCAAAC 59.095 37.037 0.00 0.00 0.00 2.93
238 239 7.065803 CCAGCTCGATAATCTTTTCTTACCAAA 59.934 37.037 0.00 0.00 0.00 3.28
239 240 6.538742 CCAGCTCGATAATCTTTTCTTACCAA 59.461 38.462 0.00 0.00 0.00 3.67
240 241 6.049149 CCAGCTCGATAATCTTTTCTTACCA 58.951 40.000 0.00 0.00 0.00 3.25
241 242 5.050023 GCCAGCTCGATAATCTTTTCTTACC 60.050 44.000 0.00 0.00 0.00 2.85
242 243 5.050023 GGCCAGCTCGATAATCTTTTCTTAC 60.050 44.000 0.00 0.00 0.00 2.34
243 244 5.057149 GGCCAGCTCGATAATCTTTTCTTA 58.943 41.667 0.00 0.00 0.00 2.10
244 245 3.879892 GGCCAGCTCGATAATCTTTTCTT 59.120 43.478 0.00 0.00 0.00 2.52
245 246 3.471680 GGCCAGCTCGATAATCTTTTCT 58.528 45.455 0.00 0.00 0.00 2.52
246 247 2.221981 CGGCCAGCTCGATAATCTTTTC 59.778 50.000 2.24 0.00 0.00 2.29
247 248 2.213499 CGGCCAGCTCGATAATCTTTT 58.787 47.619 2.24 0.00 0.00 2.27
248 249 1.139058 ACGGCCAGCTCGATAATCTTT 59.861 47.619 2.24 0.00 0.00 2.52
249 250 0.753262 ACGGCCAGCTCGATAATCTT 59.247 50.000 2.24 0.00 0.00 2.40
250 251 0.032678 CACGGCCAGCTCGATAATCT 59.967 55.000 2.24 0.00 0.00 2.40
251 252 1.560860 GCACGGCCAGCTCGATAATC 61.561 60.000 2.24 0.00 0.00 1.75
252 253 1.595382 GCACGGCCAGCTCGATAAT 60.595 57.895 2.24 0.00 0.00 1.28
253 254 2.202878 GCACGGCCAGCTCGATAA 60.203 61.111 2.24 0.00 0.00 1.75
254 255 2.310327 ATTGCACGGCCAGCTCGATA 62.310 55.000 17.09 0.00 0.00 2.92
255 256 3.687321 ATTGCACGGCCAGCTCGAT 62.687 57.895 17.09 6.98 0.00 3.59
256 257 4.393155 ATTGCACGGCCAGCTCGA 62.393 61.111 17.09 5.14 0.00 4.04
257 258 3.869272 GATTGCACGGCCAGCTCG 61.869 66.667 17.09 0.00 0.00 5.03
258 259 2.747460 TGATTGCACGGCCAGCTC 60.747 61.111 17.09 8.68 0.00 4.09
259 260 3.058160 GTGATTGCACGGCCAGCT 61.058 61.111 17.09 0.00 34.94 4.24
267 268 5.402270 GGTTGACATGTAAAAGTGATTGCAC 59.598 40.000 0.00 0.00 45.49 4.57
268 269 5.301551 AGGTTGACATGTAAAAGTGATTGCA 59.698 36.000 0.00 0.00 0.00 4.08
269 270 5.772521 AGGTTGACATGTAAAAGTGATTGC 58.227 37.500 0.00 0.00 0.00 3.56
270 271 7.206981 AGAGGTTGACATGTAAAAGTGATTG 57.793 36.000 0.00 0.00 0.00 2.67
271 272 7.255590 CCAAGAGGTTGACATGTAAAAGTGATT 60.256 37.037 0.00 0.00 35.46 2.57
272 273 6.207417 CCAAGAGGTTGACATGTAAAAGTGAT 59.793 38.462 0.00 0.00 35.46 3.06
273 274 5.530915 CCAAGAGGTTGACATGTAAAAGTGA 59.469 40.000 0.00 0.00 35.46 3.41
274 275 5.762045 CCAAGAGGTTGACATGTAAAAGTG 58.238 41.667 0.00 0.00 35.46 3.16
275 276 4.278419 GCCAAGAGGTTGACATGTAAAAGT 59.722 41.667 0.00 0.00 35.46 2.66
276 277 4.613622 CGCCAAGAGGTTGACATGTAAAAG 60.614 45.833 0.00 0.00 35.46 2.27
277 278 3.252215 CGCCAAGAGGTTGACATGTAAAA 59.748 43.478 0.00 0.00 35.46 1.52
278 279 2.811431 CGCCAAGAGGTTGACATGTAAA 59.189 45.455 0.00 0.00 35.46 2.01
279 280 2.037902 TCGCCAAGAGGTTGACATGTAA 59.962 45.455 0.00 0.00 35.46 2.41
280 281 1.621317 TCGCCAAGAGGTTGACATGTA 59.379 47.619 0.00 0.00 35.46 2.29
281 282 0.396435 TCGCCAAGAGGTTGACATGT 59.604 50.000 0.00 0.00 35.46 3.21
282 283 0.798776 GTCGCCAAGAGGTTGACATG 59.201 55.000 0.00 0.00 40.19 3.21
283 284 0.670546 CGTCGCCAAGAGGTTGACAT 60.671 55.000 0.00 0.00 40.35 3.06
284 285 1.300620 CGTCGCCAAGAGGTTGACA 60.301 57.895 0.00 0.00 40.35 3.58
285 286 0.038892 TACGTCGCCAAGAGGTTGAC 60.039 55.000 0.00 0.00 44.66 3.18
286 287 0.038892 GTACGTCGCCAAGAGGTTGA 60.039 55.000 0.00 0.00 44.66 3.18
287 288 0.319211 TGTACGTCGCCAAGAGGTTG 60.319 55.000 0.00 0.00 44.66 3.77
288 289 0.606604 ATGTACGTCGCCAAGAGGTT 59.393 50.000 0.00 0.00 44.66 3.50
290 291 0.108804 ACATGTACGTCGCCAAGAGG 60.109 55.000 0.00 0.00 40.36 3.69
291 292 2.554806 TACATGTACGTCGCCAAGAG 57.445 50.000 0.08 0.00 0.00 2.85
292 293 2.480587 CCATACATGTACGTCGCCAAGA 60.481 50.000 7.96 0.00 0.00 3.02
293 294 1.858458 CCATACATGTACGTCGCCAAG 59.142 52.381 7.96 0.00 0.00 3.61
294 295 1.471851 CCCATACATGTACGTCGCCAA 60.472 52.381 7.96 0.00 0.00 4.52
295 296 0.103390 CCCATACATGTACGTCGCCA 59.897 55.000 7.96 0.00 0.00 5.69
296 297 0.386476 TCCCATACATGTACGTCGCC 59.614 55.000 7.96 0.00 0.00 5.54
297 298 1.856597 GTTCCCATACATGTACGTCGC 59.143 52.381 7.96 0.00 0.00 5.19
298 299 3.153676 TGTTCCCATACATGTACGTCG 57.846 47.619 7.96 0.00 0.00 5.12
306 307 2.288666 GACGTGCATGTTCCCATACAT 58.711 47.619 13.92 0.00 39.27 2.29
307 308 1.677518 GGACGTGCATGTTCCCATACA 60.678 52.381 13.92 0.00 0.00 2.29
308 309 1.014352 GGACGTGCATGTTCCCATAC 58.986 55.000 13.92 0.00 0.00 2.39
309 310 0.461163 CGGACGTGCATGTTCCCATA 60.461 55.000 13.92 0.00 0.00 2.74
310 311 1.745115 CGGACGTGCATGTTCCCAT 60.745 57.895 13.92 0.00 0.00 4.00
311 312 2.358125 CGGACGTGCATGTTCCCA 60.358 61.111 13.92 0.00 0.00 4.37
312 313 3.124921 CCGGACGTGCATGTTCCC 61.125 66.667 13.92 9.82 0.00 3.97
313 314 2.047655 TCCGGACGTGCATGTTCC 60.048 61.111 13.92 14.09 0.00 3.62
314 315 0.108992 TACTCCGGACGTGCATGTTC 60.109 55.000 13.92 10.55 0.00 3.18
315 316 0.389426 GTACTCCGGACGTGCATGTT 60.389 55.000 13.92 0.00 0.00 2.71
316 317 1.214589 GTACTCCGGACGTGCATGT 59.785 57.895 12.38 12.38 0.00 3.21
317 318 1.518572 GGTACTCCGGACGTGCATG 60.519 63.158 18.45 3.82 0.00 4.06
318 319 1.681327 AGGTACTCCGGACGTGCAT 60.681 57.895 18.45 11.93 39.05 3.96
319 320 2.282674 AGGTACTCCGGACGTGCA 60.283 61.111 18.45 0.00 39.05 4.57
320 321 2.181021 CAGGTACTCCGGACGTGC 59.819 66.667 0.00 6.83 34.60 5.34
321 322 1.975407 ACCAGGTACTCCGGACGTG 60.975 63.158 0.00 3.49 34.60 4.49
322 323 1.975407 CACCAGGTACTCCGGACGT 60.975 63.158 0.00 5.87 34.60 4.34
323 324 1.975407 ACACCAGGTACTCCGGACG 60.975 63.158 0.00 0.00 34.60 4.79
324 325 1.183676 ACACACCAGGTACTCCGGAC 61.184 60.000 0.00 0.00 34.60 4.79
325 326 0.896940 GACACACCAGGTACTCCGGA 60.897 60.000 2.93 2.93 34.60 5.14
326 327 1.590147 GACACACCAGGTACTCCGG 59.410 63.158 0.00 0.00 34.60 5.14
327 328 1.211969 CGACACACCAGGTACTCCG 59.788 63.158 0.00 0.00 34.60 4.63
328 329 1.080025 GCGACACACCAGGTACTCC 60.080 63.158 0.00 0.00 34.60 3.85
329 330 0.109226 GAGCGACACACCAGGTACTC 60.109 60.000 0.00 0.00 34.60 2.59
330 331 1.533469 GGAGCGACACACCAGGTACT 61.533 60.000 0.00 0.00 43.88 2.73
331 332 1.080025 GGAGCGACACACCAGGTAC 60.080 63.158 0.00 0.00 0.00 3.34
332 333 1.228769 AGGAGCGACACACCAGGTA 60.229 57.895 0.00 0.00 0.00 3.08
333 334 2.524394 AGGAGCGACACACCAGGT 60.524 61.111 0.00 0.00 0.00 4.00
334 335 2.047844 CAGGAGCGACACACCAGG 60.048 66.667 0.00 0.00 0.00 4.45
335 336 1.069765 AACAGGAGCGACACACCAG 59.930 57.895 0.00 0.00 0.00 4.00
336 337 1.227527 CAACAGGAGCGACACACCA 60.228 57.895 0.00 0.00 0.00 4.17
337 338 0.320771 ATCAACAGGAGCGACACACC 60.321 55.000 0.00 0.00 0.00 4.16
338 339 1.071605 GATCAACAGGAGCGACACAC 58.928 55.000 0.00 0.00 0.00 3.82
339 340 0.969149 AGATCAACAGGAGCGACACA 59.031 50.000 0.00 0.00 36.90 3.72
340 341 1.354040 CAGATCAACAGGAGCGACAC 58.646 55.000 0.00 0.00 36.90 3.67
341 342 0.390340 GCAGATCAACAGGAGCGACA 60.390 55.000 0.00 0.00 36.90 4.35
342 343 0.108424 AGCAGATCAACAGGAGCGAC 60.108 55.000 0.00 0.00 36.90 5.19
343 344 0.174389 GAGCAGATCAACAGGAGCGA 59.826 55.000 0.00 0.00 36.90 4.93
344 345 0.809241 GGAGCAGATCAACAGGAGCG 60.809 60.000 0.00 0.00 36.90 5.03
345 346 0.809241 CGGAGCAGATCAACAGGAGC 60.809 60.000 0.00 0.00 0.00 4.70
346 347 3.359194 CGGAGCAGATCAACAGGAG 57.641 57.895 0.00 0.00 0.00 3.69
364 365 1.153369 TTATCTCCGCTGCTGGTGC 60.153 57.895 9.66 0.00 40.20 5.01
365 366 0.461548 TCTTATCTCCGCTGCTGGTG 59.538 55.000 9.66 7.94 0.00 4.17
366 367 1.418334 ATCTTATCTCCGCTGCTGGT 58.582 50.000 9.66 0.00 0.00 4.00
367 368 2.094286 CCTATCTTATCTCCGCTGCTGG 60.094 54.545 0.00 0.82 0.00 4.85
368 369 2.673610 GCCTATCTTATCTCCGCTGCTG 60.674 54.545 0.00 0.00 0.00 4.41
369 370 1.548269 GCCTATCTTATCTCCGCTGCT 59.452 52.381 0.00 0.00 0.00 4.24
370 371 1.273606 TGCCTATCTTATCTCCGCTGC 59.726 52.381 0.00 0.00 0.00 5.25
371 372 2.669670 CGTGCCTATCTTATCTCCGCTG 60.670 54.545 0.00 0.00 0.00 5.18
372 373 1.542030 CGTGCCTATCTTATCTCCGCT 59.458 52.381 0.00 0.00 0.00 5.52
373 374 1.402984 CCGTGCCTATCTTATCTCCGC 60.403 57.143 0.00 0.00 0.00 5.54
374 375 1.402984 GCCGTGCCTATCTTATCTCCG 60.403 57.143 0.00 0.00 0.00 4.63
375 376 1.066787 GGCCGTGCCTATCTTATCTCC 60.067 57.143 7.58 0.00 46.69 3.71
376 377 2.371910 GGCCGTGCCTATCTTATCTC 57.628 55.000 7.58 0.00 46.69 2.75
393 394 3.842925 TTGTTGGGCTGTCTCCGGC 62.843 63.158 0.00 0.00 42.59 6.13
394 395 1.966451 GTTGTTGGGCTGTCTCCGG 60.966 63.158 0.00 0.00 0.00 5.14
395 396 1.966451 GGTTGTTGGGCTGTCTCCG 60.966 63.158 0.00 0.00 0.00 4.63
396 397 0.690762 TAGGTTGTTGGGCTGTCTCC 59.309 55.000 0.00 0.00 0.00 3.71
397 398 2.152016 GTTAGGTTGTTGGGCTGTCTC 58.848 52.381 0.00 0.00 0.00 3.36
398 399 1.493022 TGTTAGGTTGTTGGGCTGTCT 59.507 47.619 0.00 0.00 0.00 3.41
399 400 1.975660 TGTTAGGTTGTTGGGCTGTC 58.024 50.000 0.00 0.00 0.00 3.51
400 401 2.028876 GTTGTTAGGTTGTTGGGCTGT 58.971 47.619 0.00 0.00 0.00 4.40
401 402 2.306847 AGTTGTTAGGTTGTTGGGCTG 58.693 47.619 0.00 0.00 0.00 4.85
402 403 2.693074 CAAGTTGTTAGGTTGTTGGGCT 59.307 45.455 0.00 0.00 0.00 5.19
403 404 2.801699 GCAAGTTGTTAGGTTGTTGGGC 60.802 50.000 4.48 0.00 0.00 5.36
404 405 2.542824 CGCAAGTTGTTAGGTTGTTGGG 60.543 50.000 4.48 0.00 0.00 4.12
405 406 2.356382 TCGCAAGTTGTTAGGTTGTTGG 59.644 45.455 4.48 0.00 39.48 3.77
406 407 3.684103 TCGCAAGTTGTTAGGTTGTTG 57.316 42.857 4.48 0.00 39.48 3.33
407 408 4.083484 GCTATCGCAAGTTGTTAGGTTGTT 60.083 41.667 4.48 0.00 39.48 2.83
408 409 3.435671 GCTATCGCAAGTTGTTAGGTTGT 59.564 43.478 4.48 0.00 39.48 3.32
409 410 3.684788 AGCTATCGCAAGTTGTTAGGTTG 59.315 43.478 4.48 0.00 39.10 3.77
410 411 3.684788 CAGCTATCGCAAGTTGTTAGGTT 59.315 43.478 4.48 0.00 39.10 3.50
411 412 3.262420 CAGCTATCGCAAGTTGTTAGGT 58.738 45.455 4.48 6.62 39.10 3.08
412 413 2.609459 CCAGCTATCGCAAGTTGTTAGG 59.391 50.000 4.48 0.00 39.10 2.69
413 414 2.030946 GCCAGCTATCGCAAGTTGTTAG 59.969 50.000 4.48 5.23 39.10 2.34
414 415 2.006888 GCCAGCTATCGCAAGTTGTTA 58.993 47.619 4.48 0.00 39.10 2.41
415 416 0.804989 GCCAGCTATCGCAAGTTGTT 59.195 50.000 4.48 0.00 39.10 2.83
416 417 0.036010 AGCCAGCTATCGCAAGTTGT 60.036 50.000 4.48 0.00 39.10 3.32
417 418 0.654683 GAGCCAGCTATCGCAAGTTG 59.345 55.000 0.00 0.00 39.10 3.16
418 419 0.250234 TGAGCCAGCTATCGCAAGTT 59.750 50.000 0.00 0.00 39.10 2.66
419 420 0.250234 TTGAGCCAGCTATCGCAAGT 59.750 50.000 0.00 0.00 39.10 3.16
420 421 1.263484 CATTGAGCCAGCTATCGCAAG 59.737 52.381 8.87 0.58 39.10 4.01
421 422 1.302366 CATTGAGCCAGCTATCGCAA 58.698 50.000 6.14 6.14 39.10 4.85
422 423 1.162181 GCATTGAGCCAGCTATCGCA 61.162 55.000 0.00 0.00 36.35 5.10
423 424 1.573436 GCATTGAGCCAGCTATCGC 59.427 57.895 0.00 0.00 37.23 4.58
424 425 0.877649 ACGCATTGAGCCAGCTATCG 60.878 55.000 0.00 0.00 41.38 2.92
425 426 2.064762 CTACGCATTGAGCCAGCTATC 58.935 52.381 0.00 0.00 41.38 2.08
426 427 1.875576 GCTACGCATTGAGCCAGCTAT 60.876 52.381 7.16 0.00 41.92 2.97
427 428 0.530650 GCTACGCATTGAGCCAGCTA 60.531 55.000 7.16 0.00 41.92 3.32
428 429 1.817099 GCTACGCATTGAGCCAGCT 60.817 57.895 0.00 0.00 41.92 4.24
429 430 0.530650 TAGCTACGCATTGAGCCAGC 60.531 55.000 6.51 6.51 44.20 4.85
430 431 2.064762 GATAGCTACGCATTGAGCCAG 58.935 52.381 0.00 0.00 39.65 4.85
431 432 1.270305 GGATAGCTACGCATTGAGCCA 60.270 52.381 0.00 0.00 39.65 4.75
432 433 1.270305 TGGATAGCTACGCATTGAGCC 60.270 52.381 0.00 0.00 39.65 4.70
433 434 2.154854 TGGATAGCTACGCATTGAGC 57.845 50.000 0.00 0.00 39.08 4.26
434 435 3.257393 GGATGGATAGCTACGCATTGAG 58.743 50.000 0.00 0.00 0.00 3.02
435 436 2.352715 CGGATGGATAGCTACGCATTGA 60.353 50.000 0.00 0.00 0.00 2.57
436 437 1.995484 CGGATGGATAGCTACGCATTG 59.005 52.381 0.00 0.00 0.00 2.82
437 438 1.893137 TCGGATGGATAGCTACGCATT 59.107 47.619 0.00 0.00 0.00 3.56
438 439 1.202582 GTCGGATGGATAGCTACGCAT 59.797 52.381 0.00 0.00 0.00 4.73
439 440 0.596577 GTCGGATGGATAGCTACGCA 59.403 55.000 0.00 0.00 0.00 5.24
440 441 0.454620 CGTCGGATGGATAGCTACGC 60.455 60.000 0.00 0.00 0.00 4.42
441 442 0.873054 ACGTCGGATGGATAGCTACG 59.127 55.000 0.00 0.00 35.17 3.51
442 443 2.351544 GGAACGTCGGATGGATAGCTAC 60.352 54.545 0.00 0.00 0.00 3.58
443 444 1.884579 GGAACGTCGGATGGATAGCTA 59.115 52.381 0.00 0.00 0.00 3.32
444 445 0.674534 GGAACGTCGGATGGATAGCT 59.325 55.000 1.77 0.00 0.00 3.32
445 446 0.319641 GGGAACGTCGGATGGATAGC 60.320 60.000 1.77 0.00 0.00 2.97
446 447 3.888093 GGGAACGTCGGATGGATAG 57.112 57.895 1.77 0.00 0.00 2.08
462 463 2.377628 TTATAGGCGAGCCTTGCGGG 62.378 60.000 22.69 0.00 45.70 6.13
463 464 0.946221 CTTATAGGCGAGCCTTGCGG 60.946 60.000 22.69 7.14 45.70 5.69
464 465 0.032130 TCTTATAGGCGAGCCTTGCG 59.968 55.000 22.69 8.71 45.70 4.85
465 466 1.789506 CTCTTATAGGCGAGCCTTGC 58.210 55.000 22.69 0.00 45.70 4.01
466 467 1.789506 GCTCTTATAGGCGAGCCTTG 58.210 55.000 22.69 10.25 45.70 3.61
471 472 4.511617 TGAAGATGCTCTTATAGGCGAG 57.488 45.455 0.00 0.00 36.73 5.03
472 473 4.621991 GTTGAAGATGCTCTTATAGGCGA 58.378 43.478 0.00 0.00 36.73 5.54
473 474 3.426859 CGTTGAAGATGCTCTTATAGGCG 59.573 47.826 0.00 0.00 36.73 5.52
474 475 3.743396 CCGTTGAAGATGCTCTTATAGGC 59.257 47.826 0.00 0.00 36.73 3.93
475 476 3.743396 GCCGTTGAAGATGCTCTTATAGG 59.257 47.826 0.00 3.14 36.73 2.57
476 477 3.743396 GGCCGTTGAAGATGCTCTTATAG 59.257 47.826 0.00 0.00 36.73 1.31
477 478 3.728845 GGCCGTTGAAGATGCTCTTATA 58.271 45.455 0.00 0.00 36.73 0.98
478 479 2.565841 GGCCGTTGAAGATGCTCTTAT 58.434 47.619 0.00 0.00 36.73 1.73
479 480 1.739035 CGGCCGTTGAAGATGCTCTTA 60.739 52.381 19.50 0.00 36.73 2.10
480 481 1.021390 CGGCCGTTGAAGATGCTCTT 61.021 55.000 19.50 0.00 39.87 2.85
512 513 1.218875 CTGTGTTTACCTCACGCGCA 61.219 55.000 5.73 0.00 38.48 6.09
528 529 1.497278 CACGCGTGCTAAATGCTGT 59.503 52.632 28.16 0.00 43.37 4.40
533 534 3.131478 GCCCCACGCGTGCTAAAT 61.131 61.111 33.17 0.00 0.00 1.40
610 628 2.998667 CGAGCTAGCGCCTTTTCG 59.001 61.111 13.17 9.98 36.60 3.46
671 703 2.604686 AGAAGGCGTGGAGAGGCA 60.605 61.111 0.00 0.00 34.50 4.75
686 758 7.147915 GCAGAAAGATAAGAAGAGGAGAAGAGA 60.148 40.741 0.00 0.00 0.00 3.10
701 773 3.967734 GCGCGTTGCAGAAAGATAA 57.032 47.368 8.43 0.00 45.45 1.75
990 1064 0.179108 GGAAGTTCATCTAGCCGCGT 60.179 55.000 4.92 0.00 0.00 6.01
1060 1134 1.433053 CGGTCTTGTGCCGTGTTCAA 61.433 55.000 0.00 0.00 43.84 2.69
1118 1192 3.360423 ATCCGCTCGTCCTCCTGGA 62.360 63.158 0.00 0.00 40.69 3.86
1329 1403 1.374947 CCAGATGTCCAACCACCGT 59.625 57.895 0.00 0.00 0.00 4.83
1687 1793 2.437359 GCATCTCCAACAGGCGCT 60.437 61.111 7.64 0.00 0.00 5.92
1707 1813 0.934436 CGTGCGTCTTTGGCCTTTTG 60.934 55.000 3.32 0.00 0.00 2.44
1711 1817 4.626081 AGCGTGCGTCTTTGGCCT 62.626 61.111 3.32 0.00 0.00 5.19
1712 1818 4.090057 GAGCGTGCGTCTTTGGCC 62.090 66.667 0.00 0.00 0.00 5.36
1713 1819 2.387125 TTTGAGCGTGCGTCTTTGGC 62.387 55.000 0.00 0.00 0.00 4.52
1714 1820 0.657368 GTTTGAGCGTGCGTCTTTGG 60.657 55.000 0.00 0.00 0.00 3.28
1715 1821 0.986874 CGTTTGAGCGTGCGTCTTTG 60.987 55.000 0.00 0.00 0.00 2.77
1716 1822 1.275657 CGTTTGAGCGTGCGTCTTT 59.724 52.632 0.00 0.00 0.00 2.52
1717 1823 2.594962 CCGTTTGAGCGTGCGTCTT 61.595 57.895 0.00 0.00 0.00 3.01
1718 1824 3.036084 CCGTTTGAGCGTGCGTCT 61.036 61.111 0.00 0.00 0.00 4.18
1719 1825 4.072088 CCCGTTTGAGCGTGCGTC 62.072 66.667 0.00 0.00 0.00 5.19
1723 1829 3.047877 GTCCCCCGTTTGAGCGTG 61.048 66.667 0.00 0.00 0.00 5.34
1724 1830 4.675029 CGTCCCCCGTTTGAGCGT 62.675 66.667 0.00 0.00 0.00 5.07
1726 1832 4.699522 AGCGTCCCCCGTTTGAGC 62.700 66.667 0.00 0.00 39.32 4.26
1727 1833 2.742372 CAGCGTCCCCCGTTTGAG 60.742 66.667 0.00 0.00 39.32 3.02
1728 1834 4.323477 CCAGCGTCCCCCGTTTGA 62.323 66.667 0.00 0.00 39.32 2.69
1765 1871 1.089112 TCCGTTTATCTGCTCGACGA 58.911 50.000 0.00 0.00 35.90 4.20
1778 1884 0.321122 CTCTGCAGGCTCTTCCGTTT 60.321 55.000 15.13 0.00 40.77 3.60
1779 1885 1.294780 CTCTGCAGGCTCTTCCGTT 59.705 57.895 15.13 0.00 40.77 4.44
1806 1912 1.480212 TTCATCACCGAGGGCACAGT 61.480 55.000 0.00 0.00 0.00 3.55
1845 1951 4.864334 CATGGTCCTCCCTGCCGC 62.864 72.222 0.00 0.00 0.00 6.53
1888 1994 2.088763 CAGCACGTCTACGGTGCAG 61.089 63.158 22.47 15.38 43.48 4.41
1945 2054 2.176273 CGCATGGAAGAAGGCTCCG 61.176 63.158 0.00 0.00 0.00 4.63
1972 2081 1.813513 GTCTGGGTTGATGGAGTGTG 58.186 55.000 0.00 0.00 0.00 3.82
1973 2082 0.321671 CGTCTGGGTTGATGGAGTGT 59.678 55.000 0.00 0.00 0.00 3.55
1974 2083 0.321671 ACGTCTGGGTTGATGGAGTG 59.678 55.000 0.00 0.00 0.00 3.51
1975 2084 0.321671 CACGTCTGGGTTGATGGAGT 59.678 55.000 0.00 0.00 0.00 3.85
1976 2085 1.021390 GCACGTCTGGGTTGATGGAG 61.021 60.000 0.00 0.00 0.00 3.86
1977 2086 1.003839 GCACGTCTGGGTTGATGGA 60.004 57.895 0.00 0.00 0.00 3.41
1978 2087 1.003355 AGCACGTCTGGGTTGATGG 60.003 57.895 0.00 0.00 0.00 3.51
1979 2088 1.915614 GCAGCACGTCTGGGTTGATG 61.916 60.000 14.19 0.00 43.06 3.07
1980 2089 1.672356 GCAGCACGTCTGGGTTGAT 60.672 57.895 14.19 0.00 43.06 2.57
1981 2090 2.280797 GCAGCACGTCTGGGTTGA 60.281 61.111 14.19 0.00 43.06 3.18
1982 2091 3.716006 CGCAGCACGTCTGGGTTG 61.716 66.667 17.73 4.12 46.92 3.77
1986 2095 4.662961 TGGTCGCAGCACGTCTGG 62.663 66.667 14.19 6.97 43.06 3.86
1987 2096 3.406361 GTGGTCGCAGCACGTCTG 61.406 66.667 9.73 9.73 45.62 3.51
1992 2101 4.994201 TCGTCGTGGTCGCAGCAC 62.994 66.667 7.99 7.99 42.72 4.40
1993 2102 4.994201 GTCGTCGTGGTCGCAGCA 62.994 66.667 0.00 0.00 36.96 4.41
1995 2104 4.379143 TCGTCGTCGTGGTCGCAG 62.379 66.667 1.33 0.00 38.33 5.18
1996 2105 4.671549 GTCGTCGTCGTGGTCGCA 62.672 66.667 1.33 0.00 38.33 5.10
1999 2108 3.940975 ATGCGTCGTCGTCGTGGTC 62.941 63.158 13.09 0.00 39.49 4.02
2000 2109 4.034258 ATGCGTCGTCGTCGTGGT 62.034 61.111 13.09 0.00 39.49 4.16
2001 2110 3.532792 CATGCGTCGTCGTCGTGG 61.533 66.667 13.09 0.43 39.49 4.94
2002 2111 4.178255 GCATGCGTCGTCGTCGTG 62.178 66.667 13.09 8.71 39.49 4.35
2035 2144 2.476320 GCATGGAAGAAGGCTCCGC 61.476 63.158 0.00 0.00 0.00 5.54
2036 2145 2.176273 CGCATGGAAGAAGGCTCCG 61.176 63.158 0.00 0.00 0.00 4.63
2037 2146 2.476320 GCGCATGGAAGAAGGCTCC 61.476 63.158 0.30 0.00 0.00 4.70
2038 2147 2.817423 CGCGCATGGAAGAAGGCTC 61.817 63.158 8.75 0.00 0.00 4.70
2039 2148 2.821366 CGCGCATGGAAGAAGGCT 60.821 61.111 8.75 0.00 0.00 4.58
2040 2149 4.543084 GCGCGCATGGAAGAAGGC 62.543 66.667 29.10 0.00 0.00 4.35
2041 2150 2.821366 AGCGCGCATGGAAGAAGG 60.821 61.111 35.10 0.00 0.00 3.46
2042 2151 2.402388 CAGCGCGCATGGAAGAAG 59.598 61.111 35.10 6.98 0.00 2.85
2043 2152 3.803082 GCAGCGCGCATGGAAGAA 61.803 61.111 35.10 0.00 41.79 2.52
2055 2164 2.359107 ATGGAGTGTGTGGCAGCG 60.359 61.111 0.00 0.00 0.00 5.18
2056 2165 0.890542 TTGATGGAGTGTGTGGCAGC 60.891 55.000 0.00 0.00 0.00 5.25
2057 2166 0.877071 GTTGATGGAGTGTGTGGCAG 59.123 55.000 0.00 0.00 0.00 4.85
2058 2167 0.537143 GGTTGATGGAGTGTGTGGCA 60.537 55.000 0.00 0.00 0.00 4.92
2059 2168 1.244019 GGGTTGATGGAGTGTGTGGC 61.244 60.000 0.00 0.00 0.00 5.01
2060 2169 0.110295 TGGGTTGATGGAGTGTGTGG 59.890 55.000 0.00 0.00 0.00 4.17
2061 2170 1.881973 CTTGGGTTGATGGAGTGTGTG 59.118 52.381 0.00 0.00 0.00 3.82
2062 2171 1.819305 GCTTGGGTTGATGGAGTGTGT 60.819 52.381 0.00 0.00 0.00 3.72
2146 2256 4.552355 TGCACGACGAAGAAGATAAAAGA 58.448 39.130 0.00 0.00 0.00 2.52
2147 2257 4.621460 TCTGCACGACGAAGAAGATAAAAG 59.379 41.667 0.00 0.00 0.00 2.27
2155 2265 0.519961 TCGATCTGCACGACGAAGAA 59.480 50.000 0.00 0.00 34.85 2.52
2164 2274 5.292834 TGATCTTTGAATCTTCGATCTGCAC 59.707 40.000 0.00 0.00 33.46 4.57
2188 2298 1.878775 GAATGCTCGCTTGGCTGTT 59.121 52.632 0.00 0.00 0.00 3.16
2204 2314 1.671054 CGCCTCTTTCTTGGCCGAA 60.671 57.895 0.00 0.00 45.90 4.30
2222 2332 4.767255 CACGCTCTCCTGGGTGCC 62.767 72.222 0.00 0.00 42.34 5.01
2269 2383 1.243342 TACATGTGGCCTGCTTGTGC 61.243 55.000 20.98 0.00 40.20 4.57
2274 2388 1.206878 TCATCTACATGTGGCCTGCT 58.793 50.000 9.11 0.00 0.00 4.24
2299 2413 2.813908 GGGTCGTAGCTGTTGCCG 60.814 66.667 0.00 0.00 40.80 5.69
2303 2417 0.466543 TTGTGTGGGTCGTAGCTGTT 59.533 50.000 0.00 0.00 0.00 3.16
2307 2421 1.429463 CTTCTTGTGTGGGTCGTAGC 58.571 55.000 0.00 0.00 0.00 3.58
2371 2489 3.760035 ACGTAGCTCCGCCAGTGG 61.760 66.667 4.20 4.20 0.00 4.00
2372 2490 2.507102 CACGTAGCTCCGCCAGTG 60.507 66.667 0.00 0.00 0.00 3.66
2373 2491 4.436998 GCACGTAGCTCCGCCAGT 62.437 66.667 0.00 0.00 41.15 4.00
2374 2492 4.435436 TGCACGTAGCTCCGCCAG 62.435 66.667 0.00 0.00 45.94 4.85
2375 2493 4.435436 CTGCACGTAGCTCCGCCA 62.435 66.667 0.00 0.00 45.94 5.69
2378 2496 3.932580 TTGGCTGCACGTAGCTCCG 62.933 63.158 10.03 0.00 45.94 4.63
2379 2497 1.234615 TTTTGGCTGCACGTAGCTCC 61.235 55.000 10.03 10.98 45.94 4.70
2380 2498 0.166814 CTTTTGGCTGCACGTAGCTC 59.833 55.000 10.03 1.85 45.94 4.09
2381 2499 1.856265 GCTTTTGGCTGCACGTAGCT 61.856 55.000 10.03 0.00 45.94 3.32
2382 2500 1.442688 GCTTTTGGCTGCACGTAGC 60.443 57.895 0.50 1.51 45.96 3.58
2383 2501 1.154413 CGCTTTTGGCTGCACGTAG 60.154 57.895 0.50 0.00 39.13 3.51
2384 2502 1.890041 ACGCTTTTGGCTGCACGTA 60.890 52.632 0.50 0.00 39.13 3.57
2385 2503 3.209097 ACGCTTTTGGCTGCACGT 61.209 55.556 0.50 0.00 39.13 4.49
2386 2504 2.726912 CACGCTTTTGGCTGCACG 60.727 61.111 0.50 0.00 39.13 5.34
2387 2505 3.032033 GCACGCTTTTGGCTGCAC 61.032 61.111 0.50 0.00 41.35 4.57
2388 2506 4.283403 GGCACGCTTTTGGCTGCA 62.283 61.111 0.50 0.00 42.51 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.