Multiple sequence alignment - TraesCS6A01G300700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G300700 chr6A 100.000 2450 0 0 1 2450 533468235 533465786 0.000000e+00 4525
1 TraesCS6A01G300700 chr6A 93.583 374 17 2 1305 1671 534747315 534746942 3.560000e-153 551
2 TraesCS6A01G300700 chr6A 92.733 344 14 3 968 1311 534747713 534747381 1.020000e-133 486
3 TraesCS6A01G300700 chr6A 91.275 149 6 5 789 936 534747854 534747712 1.920000e-46 196
4 TraesCS6A01G300700 chr4D 92.484 612 39 5 1844 2450 72579726 72580335 0.000000e+00 869
5 TraesCS6A01G300700 chr4D 87.188 320 30 8 1 310 375118015 375117697 1.080000e-93 353
6 TraesCS6A01G300700 chrUn 90.391 614 53 4 1842 2450 90097740 90098352 0.000000e+00 802
7 TraesCS6A01G300700 chr3B 88.543 611 64 4 1842 2447 141147913 141148522 0.000000e+00 736
8 TraesCS6A01G300700 chr3B 88.235 323 28 9 1 314 548054010 548054331 6.400000e-101 377
9 TraesCS6A01G300700 chr2B 88.815 599 60 5 1857 2450 107024618 107024022 0.000000e+00 728
10 TraesCS6A01G300700 chr2D 88.091 613 66 5 1843 2450 57382245 57382855 0.000000e+00 721
11 TraesCS6A01G300700 chr6D 91.829 514 32 5 1305 1810 388137020 388136509 0.000000e+00 708
12 TraesCS6A01G300700 chr6D 88.212 509 15 18 813 1308 388137562 388137086 1.270000e-157 566
13 TraesCS6A01G300700 chr6D 88.013 317 28 7 2 310 380589223 380588909 1.380000e-97 366
14 TraesCS6A01G300700 chr6D 87.937 315 30 6 2 309 97667740 97667427 4.980000e-97 364
15 TraesCS6A01G300700 chr2A 86.645 614 76 4 1842 2450 143292023 143291411 0.000000e+00 675
16 TraesCS6A01G300700 chr2A 95.255 274 13 0 482 755 722516004 722516277 3.740000e-118 435
17 TraesCS6A01G300700 chr2A 94.526 274 15 0 483 756 720376728 720376455 8.100000e-115 424
18 TraesCS6A01G300700 chr6B 86.460 613 78 4 1842 2450 84616227 84615616 0.000000e+00 667
19 TraesCS6A01G300700 chr6B 89.662 532 19 14 781 1311 579550764 579550268 0.000000e+00 645
20 TraesCS6A01G300700 chr6B 91.045 402 23 4 1345 1737 579550176 579549779 4.640000e-147 531
21 TraesCS6A01G300700 chr7B 86.535 609 76 4 1838 2441 229195261 229194654 0.000000e+00 665
22 TraesCS6A01G300700 chr4B 85.575 617 80 6 1842 2450 628610852 628611467 2.660000e-179 638
23 TraesCS6A01G300700 chr4B 89.274 317 31 3 439 755 50441060 50441373 6.350000e-106 394
24 TraesCS6A01G300700 chr1A 93.772 289 17 1 469 756 481919861 481919573 1.350000e-117 433
25 TraesCS6A01G300700 chr1A 94.245 278 16 0 479 756 53022267 53021990 2.250000e-115 425
26 TraesCS6A01G300700 chr4A 94.604 278 15 0 479 756 580480640 580480363 4.840000e-117 431
27 TraesCS6A01G300700 chr4A 88.328 317 28 6 1 309 669194581 669194896 2.980000e-99 372
28 TraesCS6A01G300700 chr4A 88.179 313 26 7 2 305 597896530 597896840 1.790000e-96 363
29 TraesCS6A01G300700 chr7A 94.585 277 15 0 479 755 696328259 696328535 1.740000e-116 429
30 TraesCS6A01G300700 chr7A 92.982 285 20 0 479 763 4715161 4714877 1.360000e-112 416
31 TraesCS6A01G300700 chr3A 94.585 277 15 0 479 755 361973025 361973301 1.740000e-116 429
32 TraesCS6A01G300700 chr5D 87.888 322 27 9 1 314 442673817 442674134 3.850000e-98 368
33 TraesCS6A01G300700 chr5B 88.050 318 29 7 1 310 338933899 338933583 3.850000e-98 368
34 TraesCS6A01G300700 chr1D 87.382 317 29 8 1 309 289773346 289773033 1.080000e-93 353


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G300700 chr6A 533465786 533468235 2449 True 4525 4525 100.000000 1 2450 1 chr6A.!!$R1 2449
1 TraesCS6A01G300700 chr6A 534746942 534747854 912 True 411 551 92.530333 789 1671 3 chr6A.!!$R2 882
2 TraesCS6A01G300700 chr4D 72579726 72580335 609 False 869 869 92.484000 1844 2450 1 chr4D.!!$F1 606
3 TraesCS6A01G300700 chrUn 90097740 90098352 612 False 802 802 90.391000 1842 2450 1 chrUn.!!$F1 608
4 TraesCS6A01G300700 chr3B 141147913 141148522 609 False 736 736 88.543000 1842 2447 1 chr3B.!!$F1 605
5 TraesCS6A01G300700 chr2B 107024022 107024618 596 True 728 728 88.815000 1857 2450 1 chr2B.!!$R1 593
6 TraesCS6A01G300700 chr2D 57382245 57382855 610 False 721 721 88.091000 1843 2450 1 chr2D.!!$F1 607
7 TraesCS6A01G300700 chr6D 388136509 388137562 1053 True 637 708 90.020500 813 1810 2 chr6D.!!$R3 997
8 TraesCS6A01G300700 chr2A 143291411 143292023 612 True 675 675 86.645000 1842 2450 1 chr2A.!!$R1 608
9 TraesCS6A01G300700 chr6B 84615616 84616227 611 True 667 667 86.460000 1842 2450 1 chr6B.!!$R1 608
10 TraesCS6A01G300700 chr6B 579549779 579550764 985 True 588 645 90.353500 781 1737 2 chr6B.!!$R2 956
11 TraesCS6A01G300700 chr7B 229194654 229195261 607 True 665 665 86.535000 1838 2441 1 chr7B.!!$R1 603
12 TraesCS6A01G300700 chr4B 628610852 628611467 615 False 638 638 85.575000 1842 2450 1 chr4B.!!$F2 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 334 0.028902 AGAACGCCTTTGAAACGTGC 59.971 50.0 0.0 0.0 40.44 5.34 F
336 337 0.040425 ACGCCTTTGAAACGTGCATC 60.040 50.0 0.0 0.0 38.85 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1427 1513 0.457853 TTCGAAGATCAAGTCGGGCG 60.458 55.0 11.90 0.0 37.84 6.13 R
1827 1925 0.593773 AACAACAACACGCGCCATTC 60.594 50.0 5.73 0.0 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.239763 CCATTAGTTTCAAAATACAAGGGGT 57.760 36.000 0.00 0.00 0.00 4.95
25 26 8.356000 CCATTAGTTTCAAAATACAAGGGGTA 57.644 34.615 0.00 0.00 36.16 3.69
26 27 8.977412 CCATTAGTTTCAAAATACAAGGGGTAT 58.023 33.333 0.00 0.00 44.62 2.73
40 41 9.777008 ATACAAGGGGTATTAATCCTTTGAAAA 57.223 29.630 19.07 8.76 39.73 2.29
41 42 8.134202 ACAAGGGGTATTAATCCTTTGAAAAG 57.866 34.615 19.07 5.73 41.02 2.27
42 43 7.733047 ACAAGGGGTATTAATCCTTTGAAAAGT 59.267 33.333 19.07 6.20 41.02 2.66
43 44 7.956328 AGGGGTATTAATCCTTTGAAAAGTC 57.044 36.000 0.00 0.00 34.20 3.01
44 45 7.475299 AGGGGTATTAATCCTTTGAAAAGTCA 58.525 34.615 0.00 0.00 34.20 3.41
45 46 7.953493 AGGGGTATTAATCCTTTGAAAAGTCAA 59.047 33.333 0.00 0.00 42.12 3.18
85 86 9.241919 TGATCAAGTTTAGAGCCAAAAATATCA 57.758 29.630 0.00 0.00 0.00 2.15
87 88 9.860898 ATCAAGTTTAGAGCCAAAAATATCAAC 57.139 29.630 0.00 0.00 0.00 3.18
88 89 8.855110 TCAAGTTTAGAGCCAAAAATATCAACA 58.145 29.630 0.00 0.00 0.00 3.33
89 90 9.643693 CAAGTTTAGAGCCAAAAATATCAACAT 57.356 29.630 0.00 0.00 0.00 2.71
91 92 9.860898 AGTTTAGAGCCAAAAATATCAACATTC 57.139 29.630 0.00 0.00 0.00 2.67
92 93 9.638239 GTTTAGAGCCAAAAATATCAACATTCA 57.362 29.630 0.00 0.00 0.00 2.57
93 94 9.638239 TTTAGAGCCAAAAATATCAACATTCAC 57.362 29.630 0.00 0.00 0.00 3.18
94 95 7.230849 AGAGCCAAAAATATCAACATTCACA 57.769 32.000 0.00 0.00 0.00 3.58
95 96 7.669427 AGAGCCAAAAATATCAACATTCACAA 58.331 30.769 0.00 0.00 0.00 3.33
96 97 8.316214 AGAGCCAAAAATATCAACATTCACAAT 58.684 29.630 0.00 0.00 0.00 2.71
97 98 8.259049 AGCCAAAAATATCAACATTCACAATG 57.741 30.769 0.00 0.00 44.48 2.82
148 149 9.904198 TCTTTCATGATGAATCTAATAACACCA 57.096 29.630 8.90 0.00 36.11 4.17
280 281 9.677567 TTTAAGAATCTTAACAACATCAACAGC 57.322 29.630 14.39 0.00 0.00 4.40
281 282 5.931532 AGAATCTTAACAACATCAACAGCG 58.068 37.500 0.00 0.00 0.00 5.18
282 283 3.536158 TCTTAACAACATCAACAGCGC 57.464 42.857 0.00 0.00 0.00 5.92
283 284 2.875317 TCTTAACAACATCAACAGCGCA 59.125 40.909 11.47 0.00 0.00 6.09
284 285 2.679355 TAACAACATCAACAGCGCAC 57.321 45.000 11.47 0.00 0.00 5.34
285 286 0.030638 AACAACATCAACAGCGCACC 59.969 50.000 11.47 0.00 0.00 5.01
286 287 1.100463 ACAACATCAACAGCGCACCA 61.100 50.000 11.47 0.00 0.00 4.17
287 288 0.030504 CAACATCAACAGCGCACCAA 59.969 50.000 11.47 0.00 0.00 3.67
288 289 0.743688 AACATCAACAGCGCACCAAA 59.256 45.000 11.47 0.00 0.00 3.28
289 290 0.311790 ACATCAACAGCGCACCAAAG 59.688 50.000 11.47 0.00 0.00 2.77
290 291 1.005294 CATCAACAGCGCACCAAAGC 61.005 55.000 11.47 0.00 0.00 3.51
299 300 4.999939 CACCAAAGCGCGCCCAAC 63.000 66.667 30.33 0.00 0.00 3.77
308 309 4.660938 GCGCCCAACCCTTCCAGT 62.661 66.667 0.00 0.00 0.00 4.00
309 310 3.074281 CGCCCAACCCTTCCAGTA 58.926 61.111 0.00 0.00 0.00 2.74
310 311 1.078426 CGCCCAACCCTTCCAGTAG 60.078 63.158 0.00 0.00 0.00 2.57
311 312 1.550130 CGCCCAACCCTTCCAGTAGA 61.550 60.000 0.00 0.00 0.00 2.59
312 313 0.919710 GCCCAACCCTTCCAGTAGAT 59.080 55.000 0.00 0.00 0.00 1.98
313 314 2.124411 GCCCAACCCTTCCAGTAGATA 58.876 52.381 0.00 0.00 0.00 1.98
314 315 2.508300 GCCCAACCCTTCCAGTAGATAA 59.492 50.000 0.00 0.00 0.00 1.75
315 316 3.433740 GCCCAACCCTTCCAGTAGATAAG 60.434 52.174 0.00 0.00 0.00 1.73
316 317 4.037927 CCCAACCCTTCCAGTAGATAAGA 58.962 47.826 0.00 0.00 0.00 2.10
317 318 4.473559 CCCAACCCTTCCAGTAGATAAGAA 59.526 45.833 0.00 0.00 0.00 2.52
318 319 5.429130 CCAACCCTTCCAGTAGATAAGAAC 58.571 45.833 0.00 0.00 0.00 3.01
319 320 5.109903 CAACCCTTCCAGTAGATAAGAACG 58.890 45.833 0.00 0.00 0.00 3.95
320 321 3.132467 ACCCTTCCAGTAGATAAGAACGC 59.868 47.826 0.00 0.00 0.00 4.84
321 322 3.492829 CCCTTCCAGTAGATAAGAACGCC 60.493 52.174 0.00 0.00 0.00 5.68
322 323 3.385111 CCTTCCAGTAGATAAGAACGCCT 59.615 47.826 0.00 0.00 0.00 5.52
323 324 4.141914 CCTTCCAGTAGATAAGAACGCCTT 60.142 45.833 0.00 0.00 38.87 4.35
324 325 5.416271 TTCCAGTAGATAAGAACGCCTTT 57.584 39.130 0.00 0.00 36.34 3.11
325 326 4.755411 TCCAGTAGATAAGAACGCCTTTG 58.245 43.478 0.00 0.00 36.34 2.77
326 327 4.464951 TCCAGTAGATAAGAACGCCTTTGA 59.535 41.667 0.00 0.00 36.34 2.69
327 328 5.046878 TCCAGTAGATAAGAACGCCTTTGAA 60.047 40.000 0.00 0.00 36.34 2.69
328 329 5.642063 CCAGTAGATAAGAACGCCTTTGAAA 59.358 40.000 0.00 0.00 36.34 2.69
329 330 6.402226 CCAGTAGATAAGAACGCCTTTGAAAC 60.402 42.308 0.00 0.00 36.34 2.78
330 331 4.663636 AGATAAGAACGCCTTTGAAACG 57.336 40.909 0.00 0.00 36.34 3.60
331 332 4.062991 AGATAAGAACGCCTTTGAAACGT 58.937 39.130 0.00 0.00 42.81 3.99
332 333 2.468532 AAGAACGCCTTTGAAACGTG 57.531 45.000 0.00 0.00 40.44 4.49
333 334 0.028902 AGAACGCCTTTGAAACGTGC 59.971 50.000 0.00 0.00 40.44 5.34
334 335 0.248296 GAACGCCTTTGAAACGTGCA 60.248 50.000 0.00 0.00 40.44 4.57
335 336 0.383949 AACGCCTTTGAAACGTGCAT 59.616 45.000 0.00 0.00 40.44 3.96
336 337 0.040425 ACGCCTTTGAAACGTGCATC 60.040 50.000 0.00 0.00 38.85 3.91
337 338 0.729140 CGCCTTTGAAACGTGCATCC 60.729 55.000 0.00 0.00 0.00 3.51
338 339 0.313672 GCCTTTGAAACGTGCATCCA 59.686 50.000 0.00 0.00 0.00 3.41
339 340 1.666888 GCCTTTGAAACGTGCATCCAG 60.667 52.381 0.00 0.00 0.00 3.86
340 341 1.879380 CCTTTGAAACGTGCATCCAGA 59.121 47.619 0.00 0.00 0.00 3.86
341 342 2.489329 CCTTTGAAACGTGCATCCAGAT 59.511 45.455 0.00 0.00 0.00 2.90
342 343 3.689161 CCTTTGAAACGTGCATCCAGATA 59.311 43.478 0.00 0.00 0.00 1.98
343 344 4.201851 CCTTTGAAACGTGCATCCAGATAG 60.202 45.833 0.00 0.00 0.00 2.08
344 345 3.885724 TGAAACGTGCATCCAGATAGA 57.114 42.857 0.00 0.00 0.00 1.98
345 346 4.406648 TGAAACGTGCATCCAGATAGAT 57.593 40.909 0.00 0.00 0.00 1.98
346 347 5.529581 TGAAACGTGCATCCAGATAGATA 57.470 39.130 0.00 0.00 0.00 1.98
347 348 5.532557 TGAAACGTGCATCCAGATAGATAG 58.467 41.667 0.00 0.00 0.00 2.08
348 349 4.527509 AACGTGCATCCAGATAGATAGG 57.472 45.455 0.00 0.00 0.00 2.57
349 350 2.828520 ACGTGCATCCAGATAGATAGGG 59.171 50.000 0.00 0.00 0.00 3.53
350 351 2.828520 CGTGCATCCAGATAGATAGGGT 59.171 50.000 0.00 0.00 0.00 4.34
351 352 3.119316 CGTGCATCCAGATAGATAGGGTC 60.119 52.174 0.00 0.00 0.00 4.46
352 353 3.834813 GTGCATCCAGATAGATAGGGTCA 59.165 47.826 0.00 0.00 0.00 4.02
353 354 4.081752 GTGCATCCAGATAGATAGGGTCAG 60.082 50.000 0.00 0.00 0.00 3.51
354 355 3.450457 GCATCCAGATAGATAGGGTCAGG 59.550 52.174 0.00 0.00 0.00 3.86
355 356 4.682563 CATCCAGATAGATAGGGTCAGGT 58.317 47.826 0.00 0.00 0.00 4.00
356 357 4.834406 TCCAGATAGATAGGGTCAGGTT 57.166 45.455 0.00 0.00 0.00 3.50
357 358 5.942977 TCCAGATAGATAGGGTCAGGTTA 57.057 43.478 0.00 0.00 0.00 2.85
358 359 6.289482 TCCAGATAGATAGGGTCAGGTTAA 57.711 41.667 0.00 0.00 0.00 2.01
359 360 6.875469 TCCAGATAGATAGGGTCAGGTTAAT 58.125 40.000 0.00 0.00 0.00 1.40
360 361 7.313731 TCCAGATAGATAGGGTCAGGTTAATT 58.686 38.462 0.00 0.00 0.00 1.40
361 362 7.794683 TCCAGATAGATAGGGTCAGGTTAATTT 59.205 37.037 0.00 0.00 0.00 1.82
362 363 8.097662 CCAGATAGATAGGGTCAGGTTAATTTC 58.902 40.741 0.00 0.00 0.00 2.17
363 364 8.097662 CAGATAGATAGGGTCAGGTTAATTTCC 58.902 40.741 0.00 0.00 0.00 3.13
364 365 7.794683 AGATAGATAGGGTCAGGTTAATTTCCA 59.205 37.037 2.93 0.00 0.00 3.53
365 366 6.652205 AGATAGGGTCAGGTTAATTTCCAA 57.348 37.500 2.93 0.00 0.00 3.53
366 367 7.039722 AGATAGGGTCAGGTTAATTTCCAAA 57.960 36.000 2.93 0.00 0.00 3.28
367 368 7.475299 AGATAGGGTCAGGTTAATTTCCAAAA 58.525 34.615 2.93 0.00 0.00 2.44
368 369 7.953493 AGATAGGGTCAGGTTAATTTCCAAAAA 59.047 33.333 2.93 0.00 0.00 1.94
369 370 8.679344 ATAGGGTCAGGTTAATTTCCAAAAAT 57.321 30.769 2.93 0.00 36.64 1.82
370 371 9.777008 ATAGGGTCAGGTTAATTTCCAAAAATA 57.223 29.630 2.93 0.00 33.93 1.40
371 372 8.499288 AGGGTCAGGTTAATTTCCAAAAATAA 57.501 30.769 2.93 0.00 33.93 1.40
372 373 8.939932 AGGGTCAGGTTAATTTCCAAAAATAAA 58.060 29.630 2.93 0.00 33.93 1.40
373 374 9.733556 GGGTCAGGTTAATTTCCAAAAATAAAT 57.266 29.630 2.93 0.00 33.93 1.40
387 388 8.394121 TCCAAAAATAAATAAATCAAATGCCGC 58.606 29.630 0.00 0.00 0.00 6.53
388 389 7.643371 CCAAAAATAAATAAATCAAATGCCGCC 59.357 33.333 0.00 0.00 0.00 6.13
389 390 7.856145 AAAATAAATAAATCAAATGCCGCCA 57.144 28.000 0.00 0.00 0.00 5.69
390 391 7.856145 AAATAAATAAATCAAATGCCGCCAA 57.144 28.000 0.00 0.00 0.00 4.52
391 392 6.843069 ATAAATAAATCAAATGCCGCCAAC 57.157 33.333 0.00 0.00 0.00 3.77
392 393 3.883830 ATAAATCAAATGCCGCCAACA 57.116 38.095 0.00 0.00 0.00 3.33
393 394 2.540265 AAATCAAATGCCGCCAACAA 57.460 40.000 0.00 0.00 0.00 2.83
394 395 2.083167 AATCAAATGCCGCCAACAAG 57.917 45.000 0.00 0.00 0.00 3.16
395 396 1.255882 ATCAAATGCCGCCAACAAGA 58.744 45.000 0.00 0.00 0.00 3.02
396 397 1.255882 TCAAATGCCGCCAACAAGAT 58.744 45.000 0.00 0.00 0.00 2.40
397 398 2.441410 TCAAATGCCGCCAACAAGATA 58.559 42.857 0.00 0.00 0.00 1.98
398 399 2.822561 TCAAATGCCGCCAACAAGATAA 59.177 40.909 0.00 0.00 0.00 1.75
399 400 2.923020 CAAATGCCGCCAACAAGATAAC 59.077 45.455 0.00 0.00 0.00 1.89
400 401 0.732571 ATGCCGCCAACAAGATAACG 59.267 50.000 0.00 0.00 0.00 3.18
401 402 0.604243 TGCCGCCAACAAGATAACGT 60.604 50.000 0.00 0.00 0.00 3.99
402 403 1.337917 TGCCGCCAACAAGATAACGTA 60.338 47.619 0.00 0.00 0.00 3.57
403 404 1.326548 GCCGCCAACAAGATAACGTAG 59.673 52.381 0.00 0.00 0.00 3.51
404 405 1.931172 CCGCCAACAAGATAACGTAGG 59.069 52.381 0.00 0.00 0.00 3.18
405 406 2.613691 CGCCAACAAGATAACGTAGGT 58.386 47.619 0.00 0.00 0.00 3.08
406 407 2.997986 CGCCAACAAGATAACGTAGGTT 59.002 45.455 6.03 6.03 40.20 3.50
407 408 4.175516 CGCCAACAAGATAACGTAGGTTA 58.824 43.478 10.24 10.24 42.48 2.85
408 409 4.626604 CGCCAACAAGATAACGTAGGTTAA 59.373 41.667 11.72 0.00 41.66 2.01
409 410 5.120519 CGCCAACAAGATAACGTAGGTTAAA 59.879 40.000 11.72 0.00 41.66 1.52
410 411 6.540205 GCCAACAAGATAACGTAGGTTAAAG 58.460 40.000 11.72 5.45 41.66 1.85
411 412 6.369615 GCCAACAAGATAACGTAGGTTAAAGA 59.630 38.462 11.72 0.00 41.66 2.52
412 413 7.065443 GCCAACAAGATAACGTAGGTTAAAGAT 59.935 37.037 11.72 0.00 41.66 2.40
413 414 8.388103 CCAACAAGATAACGTAGGTTAAAGATG 58.612 37.037 11.72 10.65 41.66 2.90
414 415 7.535489 ACAAGATAACGTAGGTTAAAGATGC 57.465 36.000 11.72 0.00 41.66 3.91
415 416 6.537660 ACAAGATAACGTAGGTTAAAGATGCC 59.462 38.462 11.72 0.00 41.66 4.40
416 417 5.287226 AGATAACGTAGGTTAAAGATGCCG 58.713 41.667 11.72 0.00 41.66 5.69
417 418 1.648504 ACGTAGGTTAAAGATGCCGC 58.351 50.000 0.00 0.00 0.00 6.53
418 419 0.935196 CGTAGGTTAAAGATGCCGCC 59.065 55.000 0.00 0.00 0.00 6.13
419 420 0.935196 GTAGGTTAAAGATGCCGCCG 59.065 55.000 0.00 0.00 0.00 6.46
420 421 0.812412 TAGGTTAAAGATGCCGCCGC 60.812 55.000 0.00 0.00 0.00 6.53
421 422 2.112815 GGTTAAAGATGCCGCCGCT 61.113 57.895 0.00 0.00 35.36 5.52
422 423 1.062525 GTTAAAGATGCCGCCGCTG 59.937 57.895 0.00 0.00 35.36 5.18
423 424 1.078778 TTAAAGATGCCGCCGCTGA 60.079 52.632 0.00 0.00 35.36 4.26
424 425 0.463654 TTAAAGATGCCGCCGCTGAT 60.464 50.000 0.00 0.00 35.36 2.90
425 426 0.463654 TAAAGATGCCGCCGCTGATT 60.464 50.000 0.00 0.00 35.36 2.57
426 427 1.315257 AAAGATGCCGCCGCTGATTT 61.315 50.000 0.00 0.00 35.36 2.17
427 428 1.996786 AAGATGCCGCCGCTGATTTG 61.997 55.000 0.00 0.00 35.36 2.32
428 429 4.197498 ATGCCGCCGCTGATTTGC 62.197 61.111 0.00 0.00 35.36 3.68
431 432 3.736100 CCGCCGCTGATTTGCACA 61.736 61.111 0.00 0.00 0.00 4.57
432 433 2.202388 CGCCGCTGATTTGCACAG 60.202 61.111 0.00 0.00 38.27 3.66
433 434 2.180017 GCCGCTGATTTGCACAGG 59.820 61.111 5.10 0.00 36.09 4.00
434 435 2.629656 GCCGCTGATTTGCACAGGT 61.630 57.895 5.10 0.00 36.09 4.00
435 436 1.305219 GCCGCTGATTTGCACAGGTA 61.305 55.000 5.10 0.00 36.09 3.08
436 437 0.729116 CCGCTGATTTGCACAGGTAG 59.271 55.000 5.10 0.00 36.09 3.18
437 438 1.442769 CGCTGATTTGCACAGGTAGT 58.557 50.000 5.10 0.00 36.09 2.73
438 439 1.394917 CGCTGATTTGCACAGGTAGTC 59.605 52.381 5.10 0.00 36.09 2.59
439 440 2.426522 GCTGATTTGCACAGGTAGTCA 58.573 47.619 5.10 0.00 36.09 3.41
440 441 2.417933 GCTGATTTGCACAGGTAGTCAG 59.582 50.000 5.10 4.55 36.09 3.51
441 442 3.866066 GCTGATTTGCACAGGTAGTCAGA 60.866 47.826 10.93 0.00 34.95 3.27
442 443 4.318332 CTGATTTGCACAGGTAGTCAGAA 58.682 43.478 2.56 0.00 34.95 3.02
443 444 4.065088 TGATTTGCACAGGTAGTCAGAAC 58.935 43.478 0.00 0.00 0.00 3.01
444 445 3.552132 TTTGCACAGGTAGTCAGAACA 57.448 42.857 0.00 0.00 0.00 3.18
445 446 3.552132 TTGCACAGGTAGTCAGAACAA 57.448 42.857 0.00 0.00 0.00 2.83
446 447 2.833794 TGCACAGGTAGTCAGAACAAC 58.166 47.619 0.00 0.00 0.00 3.32
447 448 2.143925 GCACAGGTAGTCAGAACAACC 58.856 52.381 0.00 0.00 0.00 3.77
448 449 2.484770 GCACAGGTAGTCAGAACAACCA 60.485 50.000 0.00 0.00 34.29 3.67
449 450 3.807209 GCACAGGTAGTCAGAACAACCAT 60.807 47.826 0.00 0.00 34.29 3.55
450 451 3.748048 CACAGGTAGTCAGAACAACCATG 59.252 47.826 0.00 0.00 34.29 3.66
451 452 3.646162 ACAGGTAGTCAGAACAACCATGA 59.354 43.478 0.00 0.00 34.29 3.07
452 453 3.997021 CAGGTAGTCAGAACAACCATGAC 59.003 47.826 0.00 0.00 42.91 3.06
456 457 2.069273 GTCAGAACAACCATGACTCCG 58.931 52.381 0.00 0.00 40.14 4.63
457 458 0.798776 CAGAACAACCATGACTCCGC 59.201 55.000 0.00 0.00 0.00 5.54
458 459 0.396435 AGAACAACCATGACTCCGCA 59.604 50.000 0.00 0.00 0.00 5.69
459 460 1.202758 AGAACAACCATGACTCCGCAA 60.203 47.619 0.00 0.00 0.00 4.85
460 461 1.606668 GAACAACCATGACTCCGCAAA 59.393 47.619 0.00 0.00 0.00 3.68
461 462 1.909700 ACAACCATGACTCCGCAAAT 58.090 45.000 0.00 0.00 0.00 2.32
462 463 1.812571 ACAACCATGACTCCGCAAATC 59.187 47.619 0.00 0.00 0.00 2.17
463 464 2.086869 CAACCATGACTCCGCAAATCT 58.913 47.619 0.00 0.00 0.00 2.40
464 465 3.270027 CAACCATGACTCCGCAAATCTA 58.730 45.455 0.00 0.00 0.00 1.98
465 466 3.185246 ACCATGACTCCGCAAATCTAG 57.815 47.619 0.00 0.00 0.00 2.43
466 467 2.158900 ACCATGACTCCGCAAATCTAGG 60.159 50.000 0.00 0.00 0.00 3.02
467 468 2.158900 CCATGACTCCGCAAATCTAGGT 60.159 50.000 0.00 0.00 0.00 3.08
468 469 3.535561 CATGACTCCGCAAATCTAGGTT 58.464 45.455 0.00 0.00 0.00 3.50
469 470 4.442893 CCATGACTCCGCAAATCTAGGTTA 60.443 45.833 0.00 0.00 0.00 2.85
470 471 4.811969 TGACTCCGCAAATCTAGGTTAA 57.188 40.909 0.00 0.00 0.00 2.01
471 472 5.155278 TGACTCCGCAAATCTAGGTTAAA 57.845 39.130 0.00 0.00 0.00 1.52
472 473 5.553123 TGACTCCGCAAATCTAGGTTAAAA 58.447 37.500 0.00 0.00 0.00 1.52
473 474 5.410439 TGACTCCGCAAATCTAGGTTAAAAC 59.590 40.000 0.00 0.00 0.00 2.43
474 475 5.310451 ACTCCGCAAATCTAGGTTAAAACA 58.690 37.500 0.00 0.00 0.00 2.83
475 476 5.766174 ACTCCGCAAATCTAGGTTAAAACAA 59.234 36.000 0.00 0.00 0.00 2.83
476 477 6.263617 ACTCCGCAAATCTAGGTTAAAACAAA 59.736 34.615 0.00 0.00 0.00 2.83
477 478 6.674066 TCCGCAAATCTAGGTTAAAACAAAG 58.326 36.000 0.00 0.00 0.00 2.77
478 479 5.344933 CCGCAAATCTAGGTTAAAACAAAGC 59.655 40.000 0.00 0.00 0.00 3.51
479 480 6.149633 CGCAAATCTAGGTTAAAACAAAGCT 58.850 36.000 0.00 0.00 40.20 3.74
480 481 6.640907 CGCAAATCTAGGTTAAAACAAAGCTT 59.359 34.615 0.00 0.00 38.17 3.74
481 482 7.806014 CGCAAATCTAGGTTAAAACAAAGCTTA 59.194 33.333 0.00 0.00 38.17 3.09
482 483 9.129209 GCAAATCTAGGTTAAAACAAAGCTTAG 57.871 33.333 0.00 0.00 38.17 2.18
483 484 9.626045 CAAATCTAGGTTAAAACAAAGCTTAGG 57.374 33.333 0.00 0.00 38.17 2.69
484 485 7.939784 ATCTAGGTTAAAACAAAGCTTAGGG 57.060 36.000 0.00 0.00 38.17 3.53
485 486 4.866508 AGGTTAAAACAAAGCTTAGGGC 57.133 40.909 0.00 0.00 33.54 5.19
486 487 4.219919 AGGTTAAAACAAAGCTTAGGGCA 58.780 39.130 0.00 0.00 44.79 5.36
487 488 4.838423 AGGTTAAAACAAAGCTTAGGGCAT 59.162 37.500 0.00 0.00 44.79 4.40
488 489 4.929211 GGTTAAAACAAAGCTTAGGGCATG 59.071 41.667 0.00 0.00 44.79 4.06
489 490 5.510690 GGTTAAAACAAAGCTTAGGGCATGT 60.511 40.000 0.00 0.00 44.79 3.21
490 491 6.294843 GGTTAAAACAAAGCTTAGGGCATGTA 60.295 38.462 0.00 0.00 44.79 2.29
491 492 4.783764 AAACAAAGCTTAGGGCATGTAC 57.216 40.909 0.00 0.00 44.79 2.90
492 493 3.433306 ACAAAGCTTAGGGCATGTACA 57.567 42.857 0.00 0.00 44.79 2.90
493 494 3.761897 ACAAAGCTTAGGGCATGTACAA 58.238 40.909 0.00 0.00 44.79 2.41
494 495 4.344104 ACAAAGCTTAGGGCATGTACAAT 58.656 39.130 0.00 0.00 44.79 2.71
495 496 4.158394 ACAAAGCTTAGGGCATGTACAATG 59.842 41.667 0.00 0.12 44.79 2.82
496 497 2.936202 AGCTTAGGGCATGTACAATGG 58.064 47.619 0.00 0.00 44.79 3.16
497 498 2.242196 AGCTTAGGGCATGTACAATGGT 59.758 45.455 0.00 0.00 44.79 3.55
498 499 3.023832 GCTTAGGGCATGTACAATGGTT 58.976 45.455 0.00 0.00 41.35 3.67
499 500 3.181487 GCTTAGGGCATGTACAATGGTTG 60.181 47.826 0.00 0.00 41.35 3.77
500 501 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
501 502 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
502 503 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
503 504 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
504 505 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
505 506 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
506 507 5.536161 GGGCATGTACAATGGTTGATAAGAT 59.464 40.000 0.00 0.00 0.00 2.40
507 508 6.714810 GGGCATGTACAATGGTTGATAAGATA 59.285 38.462 0.00 0.00 0.00 1.98
508 509 7.230510 GGGCATGTACAATGGTTGATAAGATAA 59.769 37.037 0.00 0.00 0.00 1.75
509 510 8.796475 GGCATGTACAATGGTTGATAAGATAAT 58.204 33.333 0.00 0.00 0.00 1.28
566 567 7.432869 TGACAAAGAAAAATGTCTACAATGGG 58.567 34.615 7.35 0.00 44.86 4.00
567 568 7.286546 TGACAAAGAAAAATGTCTACAATGGGA 59.713 33.333 7.35 0.00 44.86 4.37
568 569 7.433680 ACAAAGAAAAATGTCTACAATGGGAC 58.566 34.615 2.59 2.59 0.00 4.46
575 576 5.965033 ATGTCTACAATGGGACATCTCTT 57.035 39.130 14.79 0.00 46.26 2.85
577 578 7.060383 ATGTCTACAATGGGACATCTCTTAG 57.940 40.000 14.79 0.00 46.26 2.18
578 579 6.613271 ATGTCTACAATGGGACATCTCTTAGT 59.387 38.462 14.79 0.00 46.26 2.24
579 580 7.201956 ATGTCTACAATGGGACATCTCTTAGTC 60.202 40.741 14.79 0.00 46.26 2.59
587 588 7.589958 TGGGACATCTCTTAGTCTTATCTTC 57.410 40.000 0.00 0.00 35.18 2.87
588 589 7.126061 TGGGACATCTCTTAGTCTTATCTTCA 58.874 38.462 0.00 0.00 35.18 3.02
589 590 7.619698 TGGGACATCTCTTAGTCTTATCTTCAA 59.380 37.037 0.00 0.00 35.18 2.69
590 591 8.646900 GGGACATCTCTTAGTCTTATCTTCAAT 58.353 37.037 0.00 0.00 35.18 2.57
615 616 7.539034 AACTAGCAATTCCTAAAAATGTGGT 57.461 32.000 0.00 0.00 0.00 4.16
616 617 6.924111 ACTAGCAATTCCTAAAAATGTGGTG 58.076 36.000 0.00 0.00 0.00 4.17
617 618 6.719370 ACTAGCAATTCCTAAAAATGTGGTGA 59.281 34.615 0.00 0.00 0.00 4.02
618 619 6.029346 AGCAATTCCTAAAAATGTGGTGAG 57.971 37.500 0.00 0.00 0.00 3.51
619 620 5.774690 AGCAATTCCTAAAAATGTGGTGAGA 59.225 36.000 0.00 0.00 0.00 3.27
620 621 5.863935 GCAATTCCTAAAAATGTGGTGAGAC 59.136 40.000 0.00 0.00 0.00 3.36
621 622 6.516527 GCAATTCCTAAAAATGTGGTGAGACA 60.517 38.462 0.00 0.00 0.00 3.41
622 623 7.605449 CAATTCCTAAAAATGTGGTGAGACAT 58.395 34.615 0.00 0.00 38.23 3.06
623 624 8.739039 CAATTCCTAAAAATGTGGTGAGACATA 58.261 33.333 0.00 0.00 35.43 2.29
624 625 9.479549 AATTCCTAAAAATGTGGTGAGACATAT 57.520 29.630 0.00 0.00 35.43 1.78
625 626 8.877864 TTCCTAAAAATGTGGTGAGACATATT 57.122 30.769 0.00 0.00 35.43 1.28
626 627 8.279970 TCCTAAAAATGTGGTGAGACATATTG 57.720 34.615 0.00 0.00 35.43 1.90
627 628 7.888021 TCCTAAAAATGTGGTGAGACATATTGT 59.112 33.333 0.00 0.00 35.43 2.71
628 629 7.970061 CCTAAAAATGTGGTGAGACATATTGTG 59.030 37.037 0.00 0.00 35.43 3.33
629 630 4.970662 AATGTGGTGAGACATATTGTGC 57.029 40.909 0.00 0.00 35.43 4.57
630 631 3.701205 TGTGGTGAGACATATTGTGCT 57.299 42.857 0.00 0.00 0.00 4.40
631 632 4.817318 TGTGGTGAGACATATTGTGCTA 57.183 40.909 0.00 0.00 0.00 3.49
632 633 5.159273 TGTGGTGAGACATATTGTGCTAA 57.841 39.130 0.00 0.00 0.00 3.09
633 634 5.178061 TGTGGTGAGACATATTGTGCTAAG 58.822 41.667 0.00 0.00 0.00 2.18
634 635 5.046663 TGTGGTGAGACATATTGTGCTAAGA 60.047 40.000 0.00 0.00 0.00 2.10
635 636 5.521735 GTGGTGAGACATATTGTGCTAAGAG 59.478 44.000 0.00 0.00 0.00 2.85
636 637 5.422012 TGGTGAGACATATTGTGCTAAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
637 638 6.098838 TGGTGAGACATATTGTGCTAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
638 639 6.644592 GGTGAGACATATTGTGCTAAGAGATC 59.355 42.308 0.00 0.00 0.00 2.75
639 640 7.205992 GTGAGACATATTGTGCTAAGAGATCA 58.794 38.462 0.00 0.00 0.00 2.92
640 641 7.871973 GTGAGACATATTGTGCTAAGAGATCAT 59.128 37.037 0.00 0.00 0.00 2.45
641 642 8.087136 TGAGACATATTGTGCTAAGAGATCATC 58.913 37.037 0.00 0.00 0.00 2.92
642 643 8.192743 AGACATATTGTGCTAAGAGATCATCT 57.807 34.615 0.00 0.00 41.27 2.90
643 644 8.306038 AGACATATTGTGCTAAGAGATCATCTC 58.694 37.037 6.55 6.55 43.70 2.75
677 678 8.779354 TCTTAAATAAGAGAAGACAAGCCTTC 57.221 34.615 0.00 0.00 37.40 3.46
689 690 8.192068 GAAGACAAGCCTTCTCTTATAAGTTC 57.808 38.462 12.19 1.02 39.44 3.01
690 691 7.489239 AGACAAGCCTTCTCTTATAAGTTCT 57.511 36.000 12.19 0.18 0.00 3.01
691 692 8.596781 AGACAAGCCTTCTCTTATAAGTTCTA 57.403 34.615 12.19 0.00 0.00 2.10
692 693 9.207868 AGACAAGCCTTCTCTTATAAGTTCTAT 57.792 33.333 12.19 0.00 0.00 1.98
693 694 9.471084 GACAAGCCTTCTCTTATAAGTTCTATC 57.529 37.037 12.19 0.56 0.00 2.08
694 695 9.207868 ACAAGCCTTCTCTTATAAGTTCTATCT 57.792 33.333 12.19 2.64 0.00 1.98
695 696 9.691362 CAAGCCTTCTCTTATAAGTTCTATCTC 57.309 37.037 12.19 0.00 0.00 2.75
696 697 8.417273 AGCCTTCTCTTATAAGTTCTATCTCC 57.583 38.462 12.19 0.00 0.00 3.71
697 698 8.231709 AGCCTTCTCTTATAAGTTCTATCTCCT 58.768 37.037 12.19 0.00 0.00 3.69
698 699 8.520351 GCCTTCTCTTATAAGTTCTATCTCCTC 58.480 40.741 12.19 0.00 0.00 3.71
699 700 9.020731 CCTTCTCTTATAAGTTCTATCTCCTCC 57.979 40.741 12.19 0.00 0.00 4.30
700 701 9.581289 CTTCTCTTATAAGTTCTATCTCCTCCA 57.419 37.037 12.19 0.00 0.00 3.86
701 702 8.927675 TCTCTTATAAGTTCTATCTCCTCCAC 57.072 38.462 12.19 0.00 0.00 4.02
702 703 7.945664 TCTCTTATAAGTTCTATCTCCTCCACC 59.054 40.741 12.19 0.00 0.00 4.61
703 704 7.011382 TCTTATAAGTTCTATCTCCTCCACCC 58.989 42.308 12.19 0.00 0.00 4.61
704 705 3.786213 AAGTTCTATCTCCTCCACCCT 57.214 47.619 0.00 0.00 0.00 4.34
705 706 4.901785 AAGTTCTATCTCCTCCACCCTA 57.098 45.455 0.00 0.00 0.00 3.53
706 707 5.426325 AAGTTCTATCTCCTCCACCCTAT 57.574 43.478 0.00 0.00 0.00 2.57
707 708 5.005628 AGTTCTATCTCCTCCACCCTATC 57.994 47.826 0.00 0.00 0.00 2.08
708 709 4.420552 AGTTCTATCTCCTCCACCCTATCA 59.579 45.833 0.00 0.00 0.00 2.15
709 710 5.077159 AGTTCTATCTCCTCCACCCTATCAT 59.923 44.000 0.00 0.00 0.00 2.45
710 711 5.623551 TCTATCTCCTCCACCCTATCATT 57.376 43.478 0.00 0.00 0.00 2.57
711 712 5.982391 TCTATCTCCTCCACCCTATCATTT 58.018 41.667 0.00 0.00 0.00 2.32
712 713 7.116089 TCTATCTCCTCCACCCTATCATTTA 57.884 40.000 0.00 0.00 0.00 1.40
713 714 7.723382 TCTATCTCCTCCACCCTATCATTTAT 58.277 38.462 0.00 0.00 0.00 1.40
714 715 6.882768 ATCTCCTCCACCCTATCATTTATC 57.117 41.667 0.00 0.00 0.00 1.75
715 716 5.982391 TCTCCTCCACCCTATCATTTATCT 58.018 41.667 0.00 0.00 0.00 1.98
716 717 6.393897 TCTCCTCCACCCTATCATTTATCTT 58.606 40.000 0.00 0.00 0.00 2.40
717 718 7.544650 TCTCCTCCACCCTATCATTTATCTTA 58.455 38.462 0.00 0.00 0.00 2.10
718 719 8.186985 TCTCCTCCACCCTATCATTTATCTTAT 58.813 37.037 0.00 0.00 0.00 1.73
719 720 8.150827 TCCTCCACCCTATCATTTATCTTATG 57.849 38.462 0.00 0.00 0.00 1.90
720 721 7.739444 TCCTCCACCCTATCATTTATCTTATGT 59.261 37.037 0.00 0.00 0.00 2.29
721 722 7.826252 CCTCCACCCTATCATTTATCTTATGTG 59.174 40.741 0.00 0.00 0.00 3.21
722 723 8.504811 TCCACCCTATCATTTATCTTATGTGA 57.495 34.615 0.00 0.00 0.00 3.58
723 724 8.375506 TCCACCCTATCATTTATCTTATGTGAC 58.624 37.037 0.00 0.00 0.00 3.67
724 725 8.156820 CCACCCTATCATTTATCTTATGTGACA 58.843 37.037 0.00 0.00 0.00 3.58
725 726 8.993121 CACCCTATCATTTATCTTATGTGACAC 58.007 37.037 0.00 0.00 0.00 3.67
726 727 8.938883 ACCCTATCATTTATCTTATGTGACACT 58.061 33.333 7.20 0.00 0.00 3.55
727 728 9.429359 CCCTATCATTTATCTTATGTGACACTC 57.571 37.037 7.20 0.00 0.00 3.51
728 729 9.133627 CCTATCATTTATCTTATGTGACACTCG 57.866 37.037 7.20 0.00 0.00 4.18
729 730 9.684448 CTATCATTTATCTTATGTGACACTCGT 57.316 33.333 7.20 0.00 0.00 4.18
732 733 9.516314 TCATTTATCTTATGTGACACTCGTAAG 57.484 33.333 7.20 11.91 36.38 2.34
750 751 7.764695 TCGTAAGATAACACCATTGTACATG 57.235 36.000 0.00 0.00 45.01 3.21
751 752 6.256975 TCGTAAGATAACACCATTGTACATGC 59.743 38.462 0.00 0.00 45.01 4.06
752 753 5.835113 AAGATAACACCATTGTACATGCC 57.165 39.130 0.00 0.00 33.55 4.40
753 754 4.207165 AGATAACACCATTGTACATGCCC 58.793 43.478 0.00 0.00 33.55 5.36
754 755 2.603075 AACACCATTGTACATGCCCT 57.397 45.000 0.00 0.00 33.55 5.19
755 756 2.603075 ACACCATTGTACATGCCCTT 57.397 45.000 0.00 0.00 32.60 3.95
756 757 2.446435 ACACCATTGTACATGCCCTTC 58.554 47.619 0.00 0.00 32.60 3.46
757 758 1.750778 CACCATTGTACATGCCCTTCC 59.249 52.381 0.00 0.00 0.00 3.46
758 759 1.341976 ACCATTGTACATGCCCTTCCC 60.342 52.381 0.00 0.00 0.00 3.97
759 760 1.341877 CCATTGTACATGCCCTTCCCA 60.342 52.381 0.00 0.00 0.00 4.37
760 761 2.455557 CATTGTACATGCCCTTCCCAA 58.544 47.619 0.00 0.00 0.00 4.12
761 762 2.917713 TTGTACATGCCCTTCCCAAT 57.082 45.000 0.00 0.00 0.00 3.16
762 763 2.917713 TGTACATGCCCTTCCCAATT 57.082 45.000 0.00 0.00 0.00 2.32
763 764 2.733956 TGTACATGCCCTTCCCAATTC 58.266 47.619 0.00 0.00 0.00 2.17
764 765 2.042297 TGTACATGCCCTTCCCAATTCA 59.958 45.455 0.00 0.00 0.00 2.57
765 766 1.856629 ACATGCCCTTCCCAATTCAG 58.143 50.000 0.00 0.00 0.00 3.02
766 767 0.462789 CATGCCCTTCCCAATTCAGC 59.537 55.000 0.00 0.00 0.00 4.26
767 768 1.039233 ATGCCCTTCCCAATTCAGCG 61.039 55.000 0.00 0.00 0.00 5.18
768 769 2.418083 GCCCTTCCCAATTCAGCGG 61.418 63.158 0.00 0.00 0.00 5.52
769 770 1.754234 CCCTTCCCAATTCAGCGGG 60.754 63.158 0.00 0.00 44.60 6.13
770 771 1.000896 CCTTCCCAATTCAGCGGGT 60.001 57.895 0.00 0.00 43.57 5.28
771 772 0.611896 CCTTCCCAATTCAGCGGGTT 60.612 55.000 0.00 0.00 43.57 4.11
772 773 0.811281 CTTCCCAATTCAGCGGGTTC 59.189 55.000 0.00 0.00 43.57 3.62
773 774 0.610785 TTCCCAATTCAGCGGGTTCC 60.611 55.000 0.00 0.00 43.57 3.62
774 775 1.304052 CCCAATTCAGCGGGTTCCA 60.304 57.895 0.00 0.00 37.70 3.53
775 776 1.315257 CCCAATTCAGCGGGTTCCAG 61.315 60.000 0.00 0.00 37.70 3.86
776 777 0.609131 CCAATTCAGCGGGTTCCAGT 60.609 55.000 0.00 0.00 0.00 4.00
777 778 0.804989 CAATTCAGCGGGTTCCAGTC 59.195 55.000 0.00 0.00 0.00 3.51
778 779 0.400213 AATTCAGCGGGTTCCAGTCA 59.600 50.000 0.00 0.00 0.00 3.41
779 780 0.400213 ATTCAGCGGGTTCCAGTCAA 59.600 50.000 0.00 0.00 0.00 3.18
836 837 3.068024 CCAAACTGCTGGTGCTAGAAAAA 59.932 43.478 0.00 0.00 40.48 1.94
837 838 4.262164 CCAAACTGCTGGTGCTAGAAAAAT 60.262 41.667 0.00 0.00 40.48 1.82
838 839 4.510038 AACTGCTGGTGCTAGAAAAATG 57.490 40.909 0.00 0.00 40.48 2.32
839 840 3.754965 ACTGCTGGTGCTAGAAAAATGA 58.245 40.909 0.00 0.00 40.48 2.57
840 841 4.144297 ACTGCTGGTGCTAGAAAAATGAA 58.856 39.130 0.00 0.00 40.48 2.57
841 842 4.217118 ACTGCTGGTGCTAGAAAAATGAAG 59.783 41.667 0.00 0.00 40.48 3.02
845 846 5.391416 GCTGGTGCTAGAAAAATGAAGAGTC 60.391 44.000 0.00 0.00 36.03 3.36
857 858 3.826236 TGAAGAGTCGTGCTACTGTAC 57.174 47.619 0.00 0.00 0.00 2.90
891 892 1.341913 TTCCTGCCGGGCTTGCTATA 61.342 55.000 21.46 0.00 34.39 1.31
892 893 1.127567 TCCTGCCGGGCTTGCTATAT 61.128 55.000 21.46 0.00 34.39 0.86
990 992 6.239396 CCATCCTAATTCCTAGACTAGACGA 58.761 44.000 11.27 0.00 0.00 4.20
1013 1015 1.589993 CGGCGATGTACTCCTGCAG 60.590 63.158 6.78 6.78 0.00 4.41
1017 1025 0.593518 CGATGTACTCCTGCAGCGAG 60.594 60.000 22.96 22.96 45.75 5.03
1427 1513 2.804090 GCCGGAGTTCGACACGTC 60.804 66.667 5.05 0.00 42.43 4.34
1438 1524 3.547249 GACACGTCGCCCGACTTGA 62.547 63.158 26.74 0.00 44.04 3.02
1439 1525 2.126071 CACGTCGCCCGACTTGAT 60.126 61.111 18.68 0.80 44.04 2.57
1612 1709 6.516739 AAAGTAATGAAGGGCTTAGCTTTC 57.483 37.500 3.59 9.30 0.00 2.62
1643 1740 5.072040 AGAAATACATTCCGGCTTTTTGG 57.928 39.130 0.00 0.00 38.94 3.28
1671 1769 6.801539 TCTGACAAACATCAAGGAATACAC 57.198 37.500 0.00 0.00 0.00 2.90
1679 1777 8.517878 CAAACATCAAGGAATACACTGAAAGAT 58.482 33.333 0.00 0.00 37.43 2.40
1728 1826 5.070685 GTGGTATCCAAAGTCTTTCAACCT 58.929 41.667 12.60 0.00 34.18 3.50
1752 1850 4.919774 TCTTCTTATAGCCAACCCACAA 57.080 40.909 0.00 0.00 0.00 3.33
1754 1852 4.534500 TCTTCTTATAGCCAACCCACAAGA 59.466 41.667 0.00 0.00 0.00 3.02
1764 1862 1.971695 CCCACAAGAAGAACCCCGC 60.972 63.158 0.00 0.00 0.00 6.13
1772 1870 1.229400 AAGAACCCCGCCTACCTCA 60.229 57.895 0.00 0.00 0.00 3.86
1783 1881 0.970937 CCTACCTCACCGCCAGAGAA 60.971 60.000 0.00 0.00 35.09 2.87
1810 1908 0.179032 TCAGAAAGGAGCGGTTGCAA 60.179 50.000 0.00 0.00 46.23 4.08
1811 1909 0.667993 CAGAAAGGAGCGGTTGCAAA 59.332 50.000 0.00 0.00 46.23 3.68
1812 1910 1.270550 CAGAAAGGAGCGGTTGCAAAT 59.729 47.619 0.00 0.00 46.23 2.32
1813 1911 1.270550 AGAAAGGAGCGGTTGCAAATG 59.729 47.619 0.00 0.00 46.23 2.32
1814 1912 1.000274 GAAAGGAGCGGTTGCAAATGT 60.000 47.619 0.00 0.00 46.23 2.71
1815 1913 0.314935 AAGGAGCGGTTGCAAATGTG 59.685 50.000 0.00 0.00 46.23 3.21
1816 1914 0.537143 AGGAGCGGTTGCAAATGTGA 60.537 50.000 0.00 0.00 46.23 3.58
1817 1915 0.313672 GGAGCGGTTGCAAATGTGAA 59.686 50.000 0.00 0.00 46.23 3.18
1818 1916 1.269517 GGAGCGGTTGCAAATGTGAAA 60.270 47.619 0.00 0.00 46.23 2.69
1819 1917 1.786579 GAGCGGTTGCAAATGTGAAAC 59.213 47.619 0.00 0.00 46.23 2.78
1820 1918 0.502275 GCGGTTGCAAATGTGAAACG 59.498 50.000 0.00 1.47 43.50 3.60
1821 1919 1.862008 GCGGTTGCAAATGTGAAACGA 60.862 47.619 0.00 0.00 43.50 3.85
1822 1920 2.043411 CGGTTGCAAATGTGAAACGAG 58.957 47.619 0.00 0.00 43.50 4.18
1823 1921 2.393764 GGTTGCAAATGTGAAACGAGG 58.606 47.619 0.00 0.00 43.50 4.63
1824 1922 1.786579 GTTGCAAATGTGAAACGAGGC 59.213 47.619 0.00 0.00 42.39 4.70
1825 1923 1.317613 TGCAAATGTGAAACGAGGCT 58.682 45.000 0.00 0.00 42.39 4.58
1826 1924 1.001487 TGCAAATGTGAAACGAGGCTG 60.001 47.619 0.00 0.00 42.39 4.85
1827 1925 1.666888 GCAAATGTGAAACGAGGCTGG 60.667 52.381 0.00 0.00 42.39 4.85
1828 1926 1.879380 CAAATGTGAAACGAGGCTGGA 59.121 47.619 2.65 0.00 42.39 3.86
1829 1927 2.270352 AATGTGAAACGAGGCTGGAA 57.730 45.000 2.65 0.00 42.39 3.53
1830 1928 2.496899 ATGTGAAACGAGGCTGGAAT 57.503 45.000 2.65 0.00 42.39 3.01
1831 1929 1.522668 TGTGAAACGAGGCTGGAATG 58.477 50.000 2.65 0.00 42.39 2.67
1832 1930 0.804989 GTGAAACGAGGCTGGAATGG 59.195 55.000 2.65 0.00 0.00 3.16
1833 1931 0.960364 TGAAACGAGGCTGGAATGGC 60.960 55.000 2.65 0.00 0.00 4.40
1834 1932 1.982073 GAAACGAGGCTGGAATGGCG 61.982 60.000 2.65 0.00 37.59 5.69
1862 1960 5.378292 TGTTGTTGTTGTAGCTTTTGTCA 57.622 34.783 0.00 0.00 0.00 3.58
2007 2110 4.734854 TCGAAGTAGTTGTTGACGTTGTAC 59.265 41.667 0.00 0.00 0.00 2.90
2232 2335 1.288127 GTTGTAGTCGGGCTCGTGT 59.712 57.895 5.57 0.00 37.69 4.49
2333 2439 4.623932 TCATCTTGGTGAAGTAAGCAGT 57.376 40.909 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.239763 ACCCCTTGTATTTTGAAACTAATGG 57.760 36.000 0.00 0.00 0.00 3.16
6 7 9.811995 GGATTAATACCCCTTGTATTTTGAAAC 57.188 33.333 3.20 0.00 45.78 2.78
7 8 9.777008 AGGATTAATACCCCTTGTATTTTGAAA 57.223 29.630 3.20 0.00 45.78 2.69
8 9 9.777008 AAGGATTAATACCCCTTGTATTTTGAA 57.223 29.630 6.20 0.00 45.78 2.69
9 10 9.777008 AAAGGATTAATACCCCTTGTATTTTGA 57.223 29.630 7.49 0.00 45.78 2.69
10 11 9.816354 CAAAGGATTAATACCCCTTGTATTTTG 57.184 33.333 7.49 0.00 45.78 2.44
11 12 9.777008 TCAAAGGATTAATACCCCTTGTATTTT 57.223 29.630 7.49 0.00 45.78 1.82
12 13 9.777008 TTCAAAGGATTAATACCCCTTGTATTT 57.223 29.630 7.49 0.00 45.78 1.40
14 15 9.777008 TTTTCAAAGGATTAATACCCCTTGTAT 57.223 29.630 7.49 0.00 42.06 2.29
15 16 9.250246 CTTTTCAAAGGATTAATACCCCTTGTA 57.750 33.333 7.49 0.00 39.97 2.41
16 17 7.733047 ACTTTTCAAAGGATTAATACCCCTTGT 59.267 33.333 7.49 0.00 39.97 3.16
17 18 8.134202 ACTTTTCAAAGGATTAATACCCCTTG 57.866 34.615 7.49 3.69 39.97 3.61
18 19 7.953493 TGACTTTTCAAAGGATTAATACCCCTT 59.047 33.333 4.36 0.00 41.70 3.95
19 20 7.475299 TGACTTTTCAAAGGATTAATACCCCT 58.525 34.615 4.36 0.00 40.31 4.79
20 21 7.712204 TGACTTTTCAAAGGATTAATACCCC 57.288 36.000 4.36 0.00 40.31 4.95
59 60 9.241919 TGATATTTTTGGCTCTAAACTTGATCA 57.758 29.630 0.00 0.00 0.00 2.92
61 62 9.860898 GTTGATATTTTTGGCTCTAAACTTGAT 57.139 29.630 0.00 0.00 0.00 2.57
62 63 8.855110 TGTTGATATTTTTGGCTCTAAACTTGA 58.145 29.630 0.00 0.00 0.00 3.02
63 64 9.643693 ATGTTGATATTTTTGGCTCTAAACTTG 57.356 29.630 0.00 0.00 0.00 3.16
65 66 9.860898 GAATGTTGATATTTTTGGCTCTAAACT 57.139 29.630 0.00 0.00 0.00 2.66
66 67 9.638239 TGAATGTTGATATTTTTGGCTCTAAAC 57.362 29.630 0.00 0.00 0.00 2.01
67 68 9.638239 GTGAATGTTGATATTTTTGGCTCTAAA 57.362 29.630 0.00 0.00 0.00 1.85
68 69 8.801299 TGTGAATGTTGATATTTTTGGCTCTAA 58.199 29.630 0.00 0.00 0.00 2.10
69 70 8.347004 TGTGAATGTTGATATTTTTGGCTCTA 57.653 30.769 0.00 0.00 0.00 2.43
70 71 7.230849 TGTGAATGTTGATATTTTTGGCTCT 57.769 32.000 0.00 0.00 0.00 4.09
71 72 7.887996 TTGTGAATGTTGATATTTTTGGCTC 57.112 32.000 0.00 0.00 0.00 4.70
72 73 8.259049 CATTGTGAATGTTGATATTTTTGGCT 57.741 30.769 0.00 0.00 34.18 4.75
122 123 9.904198 TGGTGTTATTAGATTCATCATGAAAGA 57.096 29.630 3.63 0.00 40.12 2.52
183 184 9.546428 CCAACCTCTTTAAGTTTGATCAAATTT 57.454 29.630 26.03 26.03 35.07 1.82
184 185 8.923270 TCCAACCTCTTTAAGTTTGATCAAATT 58.077 29.630 23.05 16.65 32.36 1.82
185 186 8.477419 TCCAACCTCTTTAAGTTTGATCAAAT 57.523 30.769 23.05 11.38 32.36 2.32
186 187 7.889873 TCCAACCTCTTTAAGTTTGATCAAA 57.110 32.000 16.91 16.91 0.00 2.69
187 188 8.477419 AATCCAACCTCTTTAAGTTTGATCAA 57.523 30.769 3.38 3.38 29.74 2.57
188 189 8.477419 AAATCCAACCTCTTTAAGTTTGATCA 57.523 30.769 0.00 0.00 29.74 2.92
254 255 9.677567 GCTGTTGATGTTGTTAAGATTCTTAAA 57.322 29.630 18.12 5.76 0.00 1.52
255 256 8.015087 CGCTGTTGATGTTGTTAAGATTCTTAA 58.985 33.333 13.62 13.62 0.00 1.85
256 257 7.518161 CGCTGTTGATGTTGTTAAGATTCTTA 58.482 34.615 1.90 1.90 0.00 2.10
257 258 6.373779 CGCTGTTGATGTTGTTAAGATTCTT 58.626 36.000 4.03 4.03 0.00 2.52
258 259 5.617751 GCGCTGTTGATGTTGTTAAGATTCT 60.618 40.000 0.00 0.00 0.00 2.40
259 260 4.554973 GCGCTGTTGATGTTGTTAAGATTC 59.445 41.667 0.00 0.00 0.00 2.52
260 261 4.023279 TGCGCTGTTGATGTTGTTAAGATT 60.023 37.500 9.73 0.00 0.00 2.40
261 262 3.501828 TGCGCTGTTGATGTTGTTAAGAT 59.498 39.130 9.73 0.00 0.00 2.40
262 263 2.875317 TGCGCTGTTGATGTTGTTAAGA 59.125 40.909 9.73 0.00 0.00 2.10
263 264 2.973224 GTGCGCTGTTGATGTTGTTAAG 59.027 45.455 9.73 0.00 0.00 1.85
264 265 2.287308 GGTGCGCTGTTGATGTTGTTAA 60.287 45.455 9.73 0.00 0.00 2.01
265 266 1.265635 GGTGCGCTGTTGATGTTGTTA 59.734 47.619 9.73 0.00 0.00 2.41
266 267 0.030638 GGTGCGCTGTTGATGTTGTT 59.969 50.000 9.73 0.00 0.00 2.83
267 268 1.100463 TGGTGCGCTGTTGATGTTGT 61.100 50.000 9.73 0.00 0.00 3.32
268 269 0.030504 TTGGTGCGCTGTTGATGTTG 59.969 50.000 9.73 0.00 0.00 3.33
269 270 0.743688 TTTGGTGCGCTGTTGATGTT 59.256 45.000 9.73 0.00 0.00 2.71
270 271 0.311790 CTTTGGTGCGCTGTTGATGT 59.688 50.000 9.73 0.00 0.00 3.06
271 272 1.005294 GCTTTGGTGCGCTGTTGATG 61.005 55.000 9.73 0.00 0.00 3.07
272 273 1.286880 GCTTTGGTGCGCTGTTGAT 59.713 52.632 9.73 0.00 0.00 2.57
273 274 2.721231 GCTTTGGTGCGCTGTTGA 59.279 55.556 9.73 0.00 0.00 3.18
282 283 4.999939 GTTGGGCGCGCTTTGGTG 63.000 66.667 32.29 0.00 0.00 4.17
291 292 3.262448 TACTGGAAGGGTTGGGCGC 62.262 63.158 0.00 0.00 39.30 6.53
292 293 1.078426 CTACTGGAAGGGTTGGGCG 60.078 63.158 0.00 0.00 39.30 6.13
293 294 0.919710 ATCTACTGGAAGGGTTGGGC 59.080 55.000 0.00 0.00 39.30 5.36
294 295 4.037927 TCTTATCTACTGGAAGGGTTGGG 58.962 47.826 0.00 0.00 39.30 4.12
295 296 5.429130 GTTCTTATCTACTGGAAGGGTTGG 58.571 45.833 0.00 0.00 39.30 3.77
296 297 5.109903 CGTTCTTATCTACTGGAAGGGTTG 58.890 45.833 0.00 0.00 39.30 3.77
297 298 4.382793 GCGTTCTTATCTACTGGAAGGGTT 60.383 45.833 0.00 0.00 39.30 4.11
298 299 3.132467 GCGTTCTTATCTACTGGAAGGGT 59.868 47.826 0.00 0.00 39.30 4.34
299 300 3.492829 GGCGTTCTTATCTACTGGAAGGG 60.493 52.174 0.00 0.00 39.30 3.95
300 301 3.385111 AGGCGTTCTTATCTACTGGAAGG 59.615 47.826 0.00 0.00 39.30 3.46
301 302 4.657436 AGGCGTTCTTATCTACTGGAAG 57.343 45.455 0.00 0.00 42.29 3.46
302 303 5.046878 TCAAAGGCGTTCTTATCTACTGGAA 60.047 40.000 0.00 0.00 34.78 3.53
303 304 4.464951 TCAAAGGCGTTCTTATCTACTGGA 59.535 41.667 0.00 0.00 34.78 3.86
304 305 4.755411 TCAAAGGCGTTCTTATCTACTGG 58.245 43.478 0.00 0.00 34.78 4.00
305 306 6.534934 GTTTCAAAGGCGTTCTTATCTACTG 58.465 40.000 0.00 0.00 34.78 2.74
306 307 5.347907 CGTTTCAAAGGCGTTCTTATCTACT 59.652 40.000 0.00 0.00 34.78 2.57
307 308 5.119743 ACGTTTCAAAGGCGTTCTTATCTAC 59.880 40.000 0.00 0.00 35.11 2.59
308 309 5.119588 CACGTTTCAAAGGCGTTCTTATCTA 59.880 40.000 0.00 0.00 36.67 1.98
309 310 4.062991 ACGTTTCAAAGGCGTTCTTATCT 58.937 39.130 0.00 0.00 35.11 1.98
310 311 4.148891 CACGTTTCAAAGGCGTTCTTATC 58.851 43.478 0.00 0.00 36.67 1.75
311 312 3.608474 GCACGTTTCAAAGGCGTTCTTAT 60.608 43.478 0.00 0.00 36.67 1.73
312 313 2.286536 GCACGTTTCAAAGGCGTTCTTA 60.287 45.455 0.00 0.00 36.67 2.10
313 314 1.533129 GCACGTTTCAAAGGCGTTCTT 60.533 47.619 0.00 0.00 36.67 2.52
314 315 0.028902 GCACGTTTCAAAGGCGTTCT 59.971 50.000 0.00 0.00 36.67 3.01
315 316 0.248296 TGCACGTTTCAAAGGCGTTC 60.248 50.000 0.00 0.00 36.67 3.95
316 317 0.383949 ATGCACGTTTCAAAGGCGTT 59.616 45.000 0.00 0.00 36.67 4.84
317 318 0.040425 GATGCACGTTTCAAAGGCGT 60.040 50.000 0.00 0.00 39.59 5.68
318 319 0.729140 GGATGCACGTTTCAAAGGCG 60.729 55.000 0.00 0.00 0.00 5.52
319 320 0.313672 TGGATGCACGTTTCAAAGGC 59.686 50.000 0.00 0.00 0.00 4.35
320 321 1.879380 TCTGGATGCACGTTTCAAAGG 59.121 47.619 0.00 0.00 0.00 3.11
321 322 3.837213 ATCTGGATGCACGTTTCAAAG 57.163 42.857 0.00 0.00 0.00 2.77
322 323 4.574892 TCTATCTGGATGCACGTTTCAAA 58.425 39.130 0.00 0.00 0.00 2.69
323 324 4.200838 TCTATCTGGATGCACGTTTCAA 57.799 40.909 0.00 0.00 0.00 2.69
324 325 3.885724 TCTATCTGGATGCACGTTTCA 57.114 42.857 0.00 0.00 0.00 2.69
325 326 4.926238 CCTATCTATCTGGATGCACGTTTC 59.074 45.833 0.00 0.00 0.00 2.78
326 327 4.262635 CCCTATCTATCTGGATGCACGTTT 60.263 45.833 0.00 0.00 0.00 3.60
327 328 3.259374 CCCTATCTATCTGGATGCACGTT 59.741 47.826 0.00 0.00 0.00 3.99
328 329 2.828520 CCCTATCTATCTGGATGCACGT 59.171 50.000 0.00 0.00 0.00 4.49
329 330 2.828520 ACCCTATCTATCTGGATGCACG 59.171 50.000 0.00 0.00 0.00 5.34
330 331 3.834813 TGACCCTATCTATCTGGATGCAC 59.165 47.826 0.00 0.00 0.00 4.57
331 332 4.092279 CTGACCCTATCTATCTGGATGCA 58.908 47.826 0.00 0.00 0.00 3.96
332 333 3.450457 CCTGACCCTATCTATCTGGATGC 59.550 52.174 0.00 0.00 34.32 3.91
333 334 4.682563 ACCTGACCCTATCTATCTGGATG 58.317 47.826 3.71 0.00 35.87 3.51
334 335 5.361630 AACCTGACCCTATCTATCTGGAT 57.638 43.478 3.71 0.00 35.87 3.41
335 336 4.834406 AACCTGACCCTATCTATCTGGA 57.166 45.455 3.71 0.00 35.87 3.86
336 337 7.560796 AATTAACCTGACCCTATCTATCTGG 57.439 40.000 0.00 0.00 37.45 3.86
337 338 8.097662 GGAAATTAACCTGACCCTATCTATCTG 58.902 40.741 0.00 0.00 0.00 2.90
338 339 7.794683 TGGAAATTAACCTGACCCTATCTATCT 59.205 37.037 3.79 0.00 0.00 1.98
339 340 7.974504 TGGAAATTAACCTGACCCTATCTATC 58.025 38.462 3.79 0.00 0.00 2.08
340 341 7.947782 TGGAAATTAACCTGACCCTATCTAT 57.052 36.000 3.79 0.00 0.00 1.98
341 342 7.758820 TTGGAAATTAACCTGACCCTATCTA 57.241 36.000 3.79 0.00 0.00 1.98
342 343 6.652205 TTGGAAATTAACCTGACCCTATCT 57.348 37.500 3.79 0.00 0.00 1.98
343 344 7.712204 TTTTGGAAATTAACCTGACCCTATC 57.288 36.000 3.79 0.00 0.00 2.08
344 345 8.679344 ATTTTTGGAAATTAACCTGACCCTAT 57.321 30.769 3.79 0.00 31.48 2.57
345 346 9.603189 TTATTTTTGGAAATTAACCTGACCCTA 57.397 29.630 3.79 0.00 36.82 3.53
346 347 8.499288 TTATTTTTGGAAATTAACCTGACCCT 57.501 30.769 3.79 0.00 36.82 4.34
347 348 9.733556 ATTTATTTTTGGAAATTAACCTGACCC 57.266 29.630 3.79 0.00 36.82 4.46
361 362 8.394121 GCGGCATTTGATTTATTTATTTTTGGA 58.606 29.630 0.00 0.00 0.00 3.53
362 363 7.643371 GGCGGCATTTGATTTATTTATTTTTGG 59.357 33.333 3.07 0.00 0.00 3.28
363 364 8.180267 TGGCGGCATTTGATTTATTTATTTTTG 58.820 29.630 7.97 0.00 0.00 2.44
364 365 8.273780 TGGCGGCATTTGATTTATTTATTTTT 57.726 26.923 7.97 0.00 0.00 1.94
365 366 7.856145 TGGCGGCATTTGATTTATTTATTTT 57.144 28.000 7.97 0.00 0.00 1.82
366 367 7.335422 TGTTGGCGGCATTTGATTTATTTATTT 59.665 29.630 14.32 0.00 0.00 1.40
367 368 6.820656 TGTTGGCGGCATTTGATTTATTTATT 59.179 30.769 14.32 0.00 0.00 1.40
368 369 6.344500 TGTTGGCGGCATTTGATTTATTTAT 58.656 32.000 14.32 0.00 0.00 1.40
369 370 5.724328 TGTTGGCGGCATTTGATTTATTTA 58.276 33.333 14.32 0.00 0.00 1.40
370 371 4.573900 TGTTGGCGGCATTTGATTTATTT 58.426 34.783 14.32 0.00 0.00 1.40
371 372 4.199432 TGTTGGCGGCATTTGATTTATT 57.801 36.364 14.32 0.00 0.00 1.40
372 373 3.883830 TGTTGGCGGCATTTGATTTAT 57.116 38.095 14.32 0.00 0.00 1.40
373 374 3.256879 TCTTGTTGGCGGCATTTGATTTA 59.743 39.130 14.32 0.00 0.00 1.40
374 375 2.036992 TCTTGTTGGCGGCATTTGATTT 59.963 40.909 14.32 0.00 0.00 2.17
375 376 1.617850 TCTTGTTGGCGGCATTTGATT 59.382 42.857 14.32 0.00 0.00 2.57
376 377 1.255882 TCTTGTTGGCGGCATTTGAT 58.744 45.000 14.32 0.00 0.00 2.57
377 378 1.255882 ATCTTGTTGGCGGCATTTGA 58.744 45.000 14.32 9.61 0.00 2.69
378 379 2.923020 GTTATCTTGTTGGCGGCATTTG 59.077 45.455 14.32 3.92 0.00 2.32
379 380 2.415357 CGTTATCTTGTTGGCGGCATTT 60.415 45.455 14.32 0.00 0.00 2.32
380 381 1.132262 CGTTATCTTGTTGGCGGCATT 59.868 47.619 14.32 0.00 0.00 3.56
381 382 0.732571 CGTTATCTTGTTGGCGGCAT 59.267 50.000 14.32 0.00 0.00 4.40
382 383 0.604243 ACGTTATCTTGTTGGCGGCA 60.604 50.000 7.97 7.97 0.00 5.69
383 384 1.326548 CTACGTTATCTTGTTGGCGGC 59.673 52.381 0.00 0.00 0.00 6.53
384 385 1.931172 CCTACGTTATCTTGTTGGCGG 59.069 52.381 0.00 0.00 0.00 6.13
385 386 2.613691 ACCTACGTTATCTTGTTGGCG 58.386 47.619 0.00 0.00 34.85 5.69
386 387 6.369615 TCTTTAACCTACGTTATCTTGTTGGC 59.630 38.462 0.00 0.00 34.44 4.52
387 388 7.894376 TCTTTAACCTACGTTATCTTGTTGG 57.106 36.000 0.00 0.00 34.44 3.77
388 389 7.903431 GCATCTTTAACCTACGTTATCTTGTTG 59.097 37.037 0.00 0.00 34.44 3.33
389 390 7.065443 GGCATCTTTAACCTACGTTATCTTGTT 59.935 37.037 0.00 0.00 34.44 2.83
390 391 6.537660 GGCATCTTTAACCTACGTTATCTTGT 59.462 38.462 0.00 0.00 34.44 3.16
391 392 6.292168 CGGCATCTTTAACCTACGTTATCTTG 60.292 42.308 0.00 0.00 34.44 3.02
392 393 5.751990 CGGCATCTTTAACCTACGTTATCTT 59.248 40.000 0.00 0.00 34.44 2.40
393 394 5.287226 CGGCATCTTTAACCTACGTTATCT 58.713 41.667 0.00 0.00 34.44 1.98
394 395 4.084693 GCGGCATCTTTAACCTACGTTATC 60.085 45.833 0.00 0.00 34.44 1.75
395 396 3.805971 GCGGCATCTTTAACCTACGTTAT 59.194 43.478 0.00 0.00 34.44 1.89
396 397 3.189285 GCGGCATCTTTAACCTACGTTA 58.811 45.455 0.00 0.00 33.17 3.18
397 398 2.004733 GCGGCATCTTTAACCTACGTT 58.995 47.619 0.00 0.00 35.90 3.99
398 399 1.648504 GCGGCATCTTTAACCTACGT 58.351 50.000 0.00 0.00 0.00 3.57
399 400 0.935196 GGCGGCATCTTTAACCTACG 59.065 55.000 3.07 0.00 0.00 3.51
400 401 0.935196 CGGCGGCATCTTTAACCTAC 59.065 55.000 10.53 0.00 0.00 3.18
401 402 0.812412 GCGGCGGCATCTTTAACCTA 60.812 55.000 9.78 0.00 39.62 3.08
402 403 2.112815 GCGGCGGCATCTTTAACCT 61.113 57.895 9.78 0.00 39.62 3.50
403 404 2.112815 AGCGGCGGCATCTTTAACC 61.113 57.895 19.21 0.00 43.41 2.85
404 405 1.062525 CAGCGGCGGCATCTTTAAC 59.937 57.895 19.21 0.00 43.41 2.01
405 406 0.463654 ATCAGCGGCGGCATCTTTAA 60.464 50.000 19.21 0.00 43.41 1.52
406 407 0.463654 AATCAGCGGCGGCATCTTTA 60.464 50.000 19.21 0.00 43.41 1.85
407 408 1.315257 AAATCAGCGGCGGCATCTTT 61.315 50.000 19.21 10.84 43.41 2.52
408 409 1.750399 AAATCAGCGGCGGCATCTT 60.750 52.632 19.21 5.30 43.41 2.40
409 410 2.124570 AAATCAGCGGCGGCATCT 60.125 55.556 19.21 1.80 43.41 2.90
410 411 2.025156 CAAATCAGCGGCGGCATC 59.975 61.111 19.21 0.00 43.41 3.91
411 412 4.197498 GCAAATCAGCGGCGGCAT 62.197 61.111 19.21 0.83 43.41 4.40
414 415 3.672255 CTGTGCAAATCAGCGGCGG 62.672 63.158 9.78 0.00 37.31 6.13
415 416 2.202388 CTGTGCAAATCAGCGGCG 60.202 61.111 0.51 0.51 37.31 6.46
416 417 1.305219 TACCTGTGCAAATCAGCGGC 61.305 55.000 0.00 0.00 37.31 6.53
417 418 0.729116 CTACCTGTGCAAATCAGCGG 59.271 55.000 0.00 0.00 37.31 5.52
418 419 1.394917 GACTACCTGTGCAAATCAGCG 59.605 52.381 0.00 0.00 37.31 5.18
419 420 2.417933 CTGACTACCTGTGCAAATCAGC 59.582 50.000 0.00 0.00 0.00 4.26
420 421 3.930336 TCTGACTACCTGTGCAAATCAG 58.070 45.455 0.00 0.00 34.68 2.90
421 422 4.065088 GTTCTGACTACCTGTGCAAATCA 58.935 43.478 0.00 0.00 0.00 2.57
422 423 4.065088 TGTTCTGACTACCTGTGCAAATC 58.935 43.478 0.00 0.00 0.00 2.17
423 424 4.085357 TGTTCTGACTACCTGTGCAAAT 57.915 40.909 0.00 0.00 0.00 2.32
424 425 3.552132 TGTTCTGACTACCTGTGCAAA 57.448 42.857 0.00 0.00 0.00 3.68
425 426 3.202906 GTTGTTCTGACTACCTGTGCAA 58.797 45.455 0.00 0.00 0.00 4.08
426 427 2.484770 GGTTGTTCTGACTACCTGTGCA 60.485 50.000 3.46 0.00 44.88 4.57
427 428 2.143925 GGTTGTTCTGACTACCTGTGC 58.856 52.381 3.46 0.00 44.88 4.57
432 433 4.273148 AGTCATGGTTGTTCTGACTACC 57.727 45.455 2.77 3.69 45.79 3.18
436 437 2.069273 CGGAGTCATGGTTGTTCTGAC 58.931 52.381 0.00 0.00 39.63 3.51
437 438 1.608025 GCGGAGTCATGGTTGTTCTGA 60.608 52.381 0.00 0.00 0.00 3.27
438 439 0.798776 GCGGAGTCATGGTTGTTCTG 59.201 55.000 0.00 0.00 0.00 3.02
439 440 0.396435 TGCGGAGTCATGGTTGTTCT 59.604 50.000 0.00 0.00 0.00 3.01
440 441 1.234821 TTGCGGAGTCATGGTTGTTC 58.765 50.000 0.00 0.00 0.00 3.18
441 442 1.686355 TTTGCGGAGTCATGGTTGTT 58.314 45.000 0.00 0.00 0.00 2.83
442 443 1.812571 GATTTGCGGAGTCATGGTTGT 59.187 47.619 0.00 0.00 0.00 3.32
443 444 2.086869 AGATTTGCGGAGTCATGGTTG 58.913 47.619 0.00 0.00 0.00 3.77
444 445 2.496899 AGATTTGCGGAGTCATGGTT 57.503 45.000 0.00 0.00 0.00 3.67
445 446 2.158900 CCTAGATTTGCGGAGTCATGGT 60.159 50.000 0.00 0.00 0.00 3.55
446 447 2.158900 ACCTAGATTTGCGGAGTCATGG 60.159 50.000 0.00 0.00 0.00 3.66
447 448 3.185246 ACCTAGATTTGCGGAGTCATG 57.815 47.619 0.00 0.00 0.00 3.07
448 449 3.914426 AACCTAGATTTGCGGAGTCAT 57.086 42.857 0.00 0.00 0.00 3.06
449 450 4.811969 TTAACCTAGATTTGCGGAGTCA 57.188 40.909 0.00 0.00 0.00 3.41
450 451 5.410439 TGTTTTAACCTAGATTTGCGGAGTC 59.590 40.000 0.00 0.00 0.00 3.36
451 452 5.310451 TGTTTTAACCTAGATTTGCGGAGT 58.690 37.500 0.00 0.00 0.00 3.85
452 453 5.873179 TGTTTTAACCTAGATTTGCGGAG 57.127 39.130 0.00 0.00 0.00 4.63
453 454 6.636562 TTTGTTTTAACCTAGATTTGCGGA 57.363 33.333 0.00 0.00 0.00 5.54
454 455 5.344933 GCTTTGTTTTAACCTAGATTTGCGG 59.655 40.000 0.00 0.00 0.00 5.69
455 456 6.149633 AGCTTTGTTTTAACCTAGATTTGCG 58.850 36.000 0.00 0.00 0.00 4.85
456 457 7.946655 AAGCTTTGTTTTAACCTAGATTTGC 57.053 32.000 0.00 0.00 0.00 3.68
457 458 9.626045 CCTAAGCTTTGTTTTAACCTAGATTTG 57.374 33.333 3.20 0.00 0.00 2.32
458 459 8.803235 CCCTAAGCTTTGTTTTAACCTAGATTT 58.197 33.333 3.20 0.00 0.00 2.17
459 460 7.093902 GCCCTAAGCTTTGTTTTAACCTAGATT 60.094 37.037 3.20 0.00 38.99 2.40
460 461 6.377429 GCCCTAAGCTTTGTTTTAACCTAGAT 59.623 38.462 3.20 0.00 38.99 1.98
461 462 5.708697 GCCCTAAGCTTTGTTTTAACCTAGA 59.291 40.000 3.20 0.00 38.99 2.43
462 463 5.475564 TGCCCTAAGCTTTGTTTTAACCTAG 59.524 40.000 3.20 0.00 44.23 3.02
463 464 5.386924 TGCCCTAAGCTTTGTTTTAACCTA 58.613 37.500 3.20 0.00 44.23 3.08
464 465 4.219919 TGCCCTAAGCTTTGTTTTAACCT 58.780 39.130 3.20 0.00 44.23 3.50
465 466 4.594123 TGCCCTAAGCTTTGTTTTAACC 57.406 40.909 3.20 0.00 44.23 2.85
466 467 5.538118 ACATGCCCTAAGCTTTGTTTTAAC 58.462 37.500 3.20 0.00 44.23 2.01
467 468 5.799827 ACATGCCCTAAGCTTTGTTTTAA 57.200 34.783 3.20 0.00 44.23 1.52
468 469 5.770663 TGTACATGCCCTAAGCTTTGTTTTA 59.229 36.000 3.20 0.00 44.23 1.52
469 470 4.586841 TGTACATGCCCTAAGCTTTGTTTT 59.413 37.500 3.20 0.00 44.23 2.43
470 471 4.148838 TGTACATGCCCTAAGCTTTGTTT 58.851 39.130 3.20 0.00 44.23 2.83
471 472 3.761897 TGTACATGCCCTAAGCTTTGTT 58.238 40.909 3.20 0.00 44.23 2.83
472 473 3.433306 TGTACATGCCCTAAGCTTTGT 57.567 42.857 3.20 4.16 44.23 2.83
473 474 4.440525 CCATTGTACATGCCCTAAGCTTTG 60.441 45.833 3.20 1.61 44.23 2.77
474 475 3.701040 CCATTGTACATGCCCTAAGCTTT 59.299 43.478 3.20 0.00 44.23 3.51
475 476 3.290710 CCATTGTACATGCCCTAAGCTT 58.709 45.455 3.48 3.48 44.23 3.74
476 477 2.242196 ACCATTGTACATGCCCTAAGCT 59.758 45.455 0.00 0.00 44.23 3.74
477 478 2.654863 ACCATTGTACATGCCCTAAGC 58.345 47.619 0.00 0.00 44.14 3.09
478 479 4.269183 TCAACCATTGTACATGCCCTAAG 58.731 43.478 0.00 0.00 0.00 2.18
479 480 4.308526 TCAACCATTGTACATGCCCTAA 57.691 40.909 0.00 0.00 0.00 2.69
480 481 4.518278 ATCAACCATTGTACATGCCCTA 57.482 40.909 0.00 0.00 0.00 3.53
481 482 2.897271 TCAACCATTGTACATGCCCT 57.103 45.000 0.00 0.00 0.00 5.19
482 483 4.887071 TCTTATCAACCATTGTACATGCCC 59.113 41.667 0.00 0.00 0.00 5.36
483 484 6.639632 ATCTTATCAACCATTGTACATGCC 57.360 37.500 0.00 0.00 0.00 4.40
540 541 8.090214 CCCATTGTAGACATTTTTCTTTGTCAT 58.910 33.333 5.91 0.00 43.72 3.06
541 542 7.286546 TCCCATTGTAGACATTTTTCTTTGTCA 59.713 33.333 5.91 0.00 43.72 3.58
542 543 7.595130 GTCCCATTGTAGACATTTTTCTTTGTC 59.405 37.037 0.00 0.00 42.03 3.18
543 544 7.069331 TGTCCCATTGTAGACATTTTTCTTTGT 59.931 33.333 3.37 0.00 38.07 2.83
544 545 7.432869 TGTCCCATTGTAGACATTTTTCTTTG 58.567 34.615 3.37 0.00 38.07 2.77
545 546 7.595819 TGTCCCATTGTAGACATTTTTCTTT 57.404 32.000 3.37 0.00 38.07 2.52
554 555 5.958380 ACTAAGAGATGTCCCATTGTAGACA 59.042 40.000 8.65 8.65 46.39 3.41
555 556 6.322712 AGACTAAGAGATGTCCCATTGTAGAC 59.677 42.308 0.00 0.00 34.02 2.59
556 557 6.436027 AGACTAAGAGATGTCCCATTGTAGA 58.564 40.000 0.00 0.00 34.02 2.59
557 558 6.723298 AGACTAAGAGATGTCCCATTGTAG 57.277 41.667 0.00 0.00 34.02 2.74
558 559 8.783660 ATAAGACTAAGAGATGTCCCATTGTA 57.216 34.615 0.00 0.00 34.02 2.41
559 560 7.566879 AGATAAGACTAAGAGATGTCCCATTGT 59.433 37.037 0.00 0.00 34.02 2.71
560 561 7.961351 AGATAAGACTAAGAGATGTCCCATTG 58.039 38.462 0.00 0.00 34.02 2.82
561 562 8.560124 AAGATAAGACTAAGAGATGTCCCATT 57.440 34.615 0.00 0.00 34.02 3.16
562 563 7.786943 TGAAGATAAGACTAAGAGATGTCCCAT 59.213 37.037 0.00 0.00 34.02 4.00
563 564 7.126061 TGAAGATAAGACTAAGAGATGTCCCA 58.874 38.462 0.00 0.00 34.02 4.37
564 565 7.589958 TGAAGATAAGACTAAGAGATGTCCC 57.410 40.000 0.00 0.00 34.02 4.46
589 590 9.255029 ACCACATTTTTAGGAATTGCTAGTTAT 57.745 29.630 6.79 0.00 0.00 1.89
590 591 8.519526 CACCACATTTTTAGGAATTGCTAGTTA 58.480 33.333 6.79 0.00 0.00 2.24
591 592 7.232534 TCACCACATTTTTAGGAATTGCTAGTT 59.767 33.333 6.79 0.00 0.00 2.24
592 593 6.719370 TCACCACATTTTTAGGAATTGCTAGT 59.281 34.615 6.79 0.00 0.00 2.57
593 594 7.121168 TCTCACCACATTTTTAGGAATTGCTAG 59.879 37.037 6.79 0.00 0.00 3.42
594 595 6.945435 TCTCACCACATTTTTAGGAATTGCTA 59.055 34.615 2.04 2.04 0.00 3.49
595 596 5.774690 TCTCACCACATTTTTAGGAATTGCT 59.225 36.000 4.41 4.41 0.00 3.91
596 597 5.863935 GTCTCACCACATTTTTAGGAATTGC 59.136 40.000 0.00 0.00 0.00 3.56
597 598 6.980593 TGTCTCACCACATTTTTAGGAATTG 58.019 36.000 0.00 0.00 0.00 2.32
598 599 7.781324 ATGTCTCACCACATTTTTAGGAATT 57.219 32.000 0.00 0.00 32.81 2.17
599 600 9.479549 AATATGTCTCACCACATTTTTAGGAAT 57.520 29.630 0.00 0.00 38.07 3.01
600 601 8.739039 CAATATGTCTCACCACATTTTTAGGAA 58.261 33.333 0.00 0.00 38.07 3.36
601 602 7.888021 ACAATATGTCTCACCACATTTTTAGGA 59.112 33.333 0.00 0.00 38.07 2.94
602 603 7.970061 CACAATATGTCTCACCACATTTTTAGG 59.030 37.037 0.00 0.00 38.07 2.69
603 604 7.485913 GCACAATATGTCTCACCACATTTTTAG 59.514 37.037 0.00 0.00 38.07 1.85
604 605 7.176515 AGCACAATATGTCTCACCACATTTTTA 59.823 33.333 0.00 0.00 38.07 1.52
605 606 6.015180 AGCACAATATGTCTCACCACATTTTT 60.015 34.615 0.00 0.00 38.07 1.94
606 607 5.477984 AGCACAATATGTCTCACCACATTTT 59.522 36.000 0.00 0.00 38.07 1.82
607 608 5.012239 AGCACAATATGTCTCACCACATTT 58.988 37.500 0.00 0.00 38.07 2.32
608 609 4.592942 AGCACAATATGTCTCACCACATT 58.407 39.130 0.00 0.00 38.07 2.71
609 610 4.226427 AGCACAATATGTCTCACCACAT 57.774 40.909 0.00 0.00 40.28 3.21
610 611 3.701205 AGCACAATATGTCTCACCACA 57.299 42.857 0.00 0.00 0.00 4.17
611 612 5.419542 TCTTAGCACAATATGTCTCACCAC 58.580 41.667 0.00 0.00 0.00 4.16
612 613 5.422012 TCTCTTAGCACAATATGTCTCACCA 59.578 40.000 0.00 0.00 0.00 4.17
613 614 5.907207 TCTCTTAGCACAATATGTCTCACC 58.093 41.667 0.00 0.00 0.00 4.02
614 615 7.205992 TGATCTCTTAGCACAATATGTCTCAC 58.794 38.462 0.00 0.00 0.00 3.51
615 616 7.352079 TGATCTCTTAGCACAATATGTCTCA 57.648 36.000 0.00 0.00 0.00 3.27
616 617 8.306038 AGATGATCTCTTAGCACAATATGTCTC 58.694 37.037 0.00 0.00 0.00 3.36
617 618 8.192743 AGATGATCTCTTAGCACAATATGTCT 57.807 34.615 0.00 0.00 0.00 3.41
618 619 8.464770 GAGATGATCTCTTAGCACAATATGTC 57.535 38.462 14.98 0.00 40.30 3.06
651 652 9.389755 GAAGGCTTGTCTTCTCTTATTTAAGAT 57.610 33.333 3.46 0.00 41.12 2.40
652 653 8.779354 GAAGGCTTGTCTTCTCTTATTTAAGA 57.221 34.615 3.46 0.44 39.84 2.10
664 665 8.038351 AGAACTTATAAGAGAAGGCTTGTCTTC 58.962 37.037 34.48 22.04 41.71 2.87
665 666 7.912719 AGAACTTATAAGAGAAGGCTTGTCTT 58.087 34.615 33.39 33.39 44.39 3.01
666 667 7.489239 AGAACTTATAAGAGAAGGCTTGTCT 57.511 36.000 20.19 20.19 34.32 3.41
667 668 9.471084 GATAGAACTTATAAGAGAAGGCTTGTC 57.529 37.037 19.38 16.04 0.00 3.18
668 669 9.207868 AGATAGAACTTATAAGAGAAGGCTTGT 57.792 33.333 19.38 0.00 0.00 3.16
669 670 9.691362 GAGATAGAACTTATAAGAGAAGGCTTG 57.309 37.037 19.38 0.00 0.00 4.01
670 671 8.866093 GGAGATAGAACTTATAAGAGAAGGCTT 58.134 37.037 19.38 0.00 0.00 4.35
671 672 8.231709 AGGAGATAGAACTTATAAGAGAAGGCT 58.768 37.037 19.38 8.93 0.00 4.58
672 673 8.417273 AGGAGATAGAACTTATAAGAGAAGGC 57.583 38.462 19.38 4.60 0.00 4.35
673 674 9.020731 GGAGGAGATAGAACTTATAAGAGAAGG 57.979 40.741 19.38 0.00 0.00 3.46
674 675 9.581289 TGGAGGAGATAGAACTTATAAGAGAAG 57.419 37.037 19.38 0.00 0.00 2.85
675 676 9.357161 GTGGAGGAGATAGAACTTATAAGAGAA 57.643 37.037 19.38 2.26 0.00 2.87
676 677 7.945664 GGTGGAGGAGATAGAACTTATAAGAGA 59.054 40.741 19.38 1.70 0.00 3.10
677 678 7.177744 GGGTGGAGGAGATAGAACTTATAAGAG 59.822 44.444 19.38 0.00 0.00 2.85
678 679 7.011382 GGGTGGAGGAGATAGAACTTATAAGA 58.989 42.308 19.38 0.00 0.00 2.10
679 680 7.013834 AGGGTGGAGGAGATAGAACTTATAAG 58.986 42.308 11.05 11.05 0.00 1.73
680 681 6.935036 AGGGTGGAGGAGATAGAACTTATAA 58.065 40.000 0.00 0.00 0.00 0.98
681 682 6.547396 AGGGTGGAGGAGATAGAACTTATA 57.453 41.667 0.00 0.00 0.00 0.98
682 683 5.426325 AGGGTGGAGGAGATAGAACTTAT 57.574 43.478 0.00 0.00 0.00 1.73
683 684 4.901785 AGGGTGGAGGAGATAGAACTTA 57.098 45.455 0.00 0.00 0.00 2.24
684 685 3.786213 AGGGTGGAGGAGATAGAACTT 57.214 47.619 0.00 0.00 0.00 2.66
685 686 4.420552 TGATAGGGTGGAGGAGATAGAACT 59.579 45.833 0.00 0.00 0.00 3.01
686 687 4.742012 TGATAGGGTGGAGGAGATAGAAC 58.258 47.826 0.00 0.00 0.00 3.01
687 688 5.623551 ATGATAGGGTGGAGGAGATAGAA 57.376 43.478 0.00 0.00 0.00 2.10
688 689 5.623551 AATGATAGGGTGGAGGAGATAGA 57.376 43.478 0.00 0.00 0.00 1.98
689 690 7.843760 AGATAAATGATAGGGTGGAGGAGATAG 59.156 40.741 0.00 0.00 0.00 2.08
690 691 7.723382 AGATAAATGATAGGGTGGAGGAGATA 58.277 38.462 0.00 0.00 0.00 1.98
691 692 6.579214 AGATAAATGATAGGGTGGAGGAGAT 58.421 40.000 0.00 0.00 0.00 2.75
692 693 5.982391 AGATAAATGATAGGGTGGAGGAGA 58.018 41.667 0.00 0.00 0.00 3.71
693 694 6.694445 AAGATAAATGATAGGGTGGAGGAG 57.306 41.667 0.00 0.00 0.00 3.69
694 695 7.739444 ACATAAGATAAATGATAGGGTGGAGGA 59.261 37.037 0.00 0.00 0.00 3.71
695 696 7.826252 CACATAAGATAAATGATAGGGTGGAGG 59.174 40.741 0.00 0.00 0.00 4.30
696 697 8.597167 TCACATAAGATAAATGATAGGGTGGAG 58.403 37.037 0.00 0.00 0.00 3.86
697 698 8.375506 GTCACATAAGATAAATGATAGGGTGGA 58.624 37.037 0.00 0.00 0.00 4.02
698 699 8.156820 TGTCACATAAGATAAATGATAGGGTGG 58.843 37.037 0.00 0.00 0.00 4.61
699 700 8.993121 GTGTCACATAAGATAAATGATAGGGTG 58.007 37.037 0.00 0.00 0.00 4.61
700 701 8.938883 AGTGTCACATAAGATAAATGATAGGGT 58.061 33.333 5.62 0.00 0.00 4.34
701 702 9.429359 GAGTGTCACATAAGATAAATGATAGGG 57.571 37.037 5.62 0.00 0.00 3.53
702 703 9.133627 CGAGTGTCACATAAGATAAATGATAGG 57.866 37.037 5.62 0.00 0.00 2.57
703 704 9.684448 ACGAGTGTCACATAAGATAAATGATAG 57.316 33.333 5.62 0.00 0.00 2.08
706 707 9.516314 CTTACGAGTGTCACATAAGATAAATGA 57.484 33.333 5.62 0.00 0.00 2.57
707 708 9.516314 TCTTACGAGTGTCACATAAGATAAATG 57.484 33.333 15.22 0.00 29.16 2.32
712 713 8.683615 TGTTATCTTACGAGTGTCACATAAGAT 58.316 33.333 25.11 25.11 42.45 2.40
713 714 7.966753 GTGTTATCTTACGAGTGTCACATAAGA 59.033 37.037 18.86 18.86 36.56 2.10
714 715 7.220300 GGTGTTATCTTACGAGTGTCACATAAG 59.780 40.741 5.62 9.87 0.00 1.73
715 716 7.031372 GGTGTTATCTTACGAGTGTCACATAA 58.969 38.462 5.62 0.54 0.00 1.90
716 717 6.151480 TGGTGTTATCTTACGAGTGTCACATA 59.849 38.462 5.62 0.00 0.00 2.29
717 718 5.047590 TGGTGTTATCTTACGAGTGTCACAT 60.048 40.000 5.62 0.00 0.00 3.21
718 719 4.278919 TGGTGTTATCTTACGAGTGTCACA 59.721 41.667 5.62 0.00 0.00 3.58
719 720 4.801891 TGGTGTTATCTTACGAGTGTCAC 58.198 43.478 0.00 0.00 0.00 3.67
720 721 5.654603 ATGGTGTTATCTTACGAGTGTCA 57.345 39.130 0.00 0.00 0.00 3.58
721 722 5.867716 ACAATGGTGTTATCTTACGAGTGTC 59.132 40.000 0.00 0.00 32.58 3.67
722 723 5.790593 ACAATGGTGTTATCTTACGAGTGT 58.209 37.500 0.00 0.00 32.58 3.55
723 724 6.809689 TGTACAATGGTGTTATCTTACGAGTG 59.190 38.462 0.00 0.00 39.30 3.51
724 725 6.927416 TGTACAATGGTGTTATCTTACGAGT 58.073 36.000 0.00 0.00 39.30 4.18
725 726 7.516785 GCATGTACAATGGTGTTATCTTACGAG 60.517 40.741 0.00 0.00 39.30 4.18
726 727 6.256975 GCATGTACAATGGTGTTATCTTACGA 59.743 38.462 0.00 0.00 39.30 3.43
727 728 6.418956 GCATGTACAATGGTGTTATCTTACG 58.581 40.000 0.00 0.00 39.30 3.18
728 729 6.238648 GGGCATGTACAATGGTGTTATCTTAC 60.239 42.308 0.00 0.00 39.30 2.34
729 730 5.825679 GGGCATGTACAATGGTGTTATCTTA 59.174 40.000 0.00 0.00 39.30 2.10
730 731 4.644685 GGGCATGTACAATGGTGTTATCTT 59.355 41.667 0.00 0.00 39.30 2.40
731 732 4.079787 AGGGCATGTACAATGGTGTTATCT 60.080 41.667 0.00 0.00 39.30 1.98
732 733 4.207165 AGGGCATGTACAATGGTGTTATC 58.793 43.478 0.00 0.00 39.30 1.75
733 734 4.249638 AGGGCATGTACAATGGTGTTAT 57.750 40.909 0.00 0.00 39.30 1.89
734 735 3.730215 AGGGCATGTACAATGGTGTTA 57.270 42.857 0.00 0.00 39.30 2.41
735 736 2.603075 AGGGCATGTACAATGGTGTT 57.397 45.000 0.00 0.00 39.30 3.32
736 737 2.446435 GAAGGGCATGTACAATGGTGT 58.554 47.619 0.00 0.00 42.09 4.16
737 738 1.750778 GGAAGGGCATGTACAATGGTG 59.249 52.381 0.00 0.00 0.00 4.17
738 739 1.341976 GGGAAGGGCATGTACAATGGT 60.342 52.381 0.00 0.00 0.00 3.55
739 740 1.341877 TGGGAAGGGCATGTACAATGG 60.342 52.381 0.00 0.00 0.00 3.16
740 741 2.142356 TGGGAAGGGCATGTACAATG 57.858 50.000 0.00 0.12 0.00 2.82
741 742 2.917713 TTGGGAAGGGCATGTACAAT 57.082 45.000 0.00 0.00 0.00 2.71
742 743 2.917713 ATTGGGAAGGGCATGTACAA 57.082 45.000 0.00 0.00 0.00 2.41
743 744 2.042297 TGAATTGGGAAGGGCATGTACA 59.958 45.455 0.00 0.00 0.00 2.90
744 745 2.689983 CTGAATTGGGAAGGGCATGTAC 59.310 50.000 0.00 0.00 0.00 2.90
745 746 2.949963 GCTGAATTGGGAAGGGCATGTA 60.950 50.000 0.00 0.00 0.00 2.29
746 747 1.856629 CTGAATTGGGAAGGGCATGT 58.143 50.000 0.00 0.00 0.00 3.21
747 748 0.462789 GCTGAATTGGGAAGGGCATG 59.537 55.000 0.00 0.00 0.00 4.06
748 749 1.039233 CGCTGAATTGGGAAGGGCAT 61.039 55.000 0.00 0.00 0.00 4.40
749 750 1.678635 CGCTGAATTGGGAAGGGCA 60.679 57.895 0.00 0.00 0.00 5.36
750 751 2.418083 CCGCTGAATTGGGAAGGGC 61.418 63.158 0.00 0.00 0.00 5.19
751 752 3.924507 CCGCTGAATTGGGAAGGG 58.075 61.111 0.00 0.00 0.00 3.95
757 758 0.609131 ACTGGAACCCGCTGAATTGG 60.609 55.000 0.00 0.00 0.00 3.16
758 759 0.804989 GACTGGAACCCGCTGAATTG 59.195 55.000 0.00 0.00 0.00 2.32
759 760 0.400213 TGACTGGAACCCGCTGAATT 59.600 50.000 0.00 0.00 0.00 2.17
760 761 0.400213 TTGACTGGAACCCGCTGAAT 59.600 50.000 0.00 0.00 0.00 2.57
761 762 0.181587 TTTGACTGGAACCCGCTGAA 59.818 50.000 0.00 0.00 0.00 3.02
762 763 0.181587 TTTTGACTGGAACCCGCTGA 59.818 50.000 0.00 0.00 0.00 4.26
763 764 1.028905 TTTTTGACTGGAACCCGCTG 58.971 50.000 0.00 0.00 0.00 5.18
764 765 3.505835 TTTTTGACTGGAACCCGCT 57.494 47.368 0.00 0.00 0.00 5.52
836 837 3.756963 TGTACAGTAGCACGACTCTTCAT 59.243 43.478 0.00 0.00 0.00 2.57
837 838 3.143728 TGTACAGTAGCACGACTCTTCA 58.856 45.455 0.00 0.00 0.00 3.02
838 839 3.826236 TGTACAGTAGCACGACTCTTC 57.174 47.619 0.00 0.00 0.00 2.87
839 840 4.459685 AGAATGTACAGTAGCACGACTCTT 59.540 41.667 0.33 0.00 0.00 2.85
840 841 4.011023 AGAATGTACAGTAGCACGACTCT 58.989 43.478 0.33 0.00 0.00 3.24
841 842 4.358494 AGAATGTACAGTAGCACGACTC 57.642 45.455 0.33 0.00 0.00 3.36
845 846 3.859961 CCTGAAGAATGTACAGTAGCACG 59.140 47.826 0.33 0.00 0.00 5.34
880 881 4.613622 CGTGTGCATTTATATAGCAAGCCC 60.614 45.833 0.00 0.00 40.35 5.19
891 892 2.809119 TCCGTTTGACGTGTGCATTTAT 59.191 40.909 0.00 0.00 40.58 1.40
892 893 2.032722 GTCCGTTTGACGTGTGCATTTA 60.033 45.455 0.00 0.00 40.58 1.40
956 958 2.940890 ATTAGGATGGCCACGCACGG 62.941 60.000 8.16 0.00 36.29 4.94
957 959 1.095228 AATTAGGATGGCCACGCACG 61.095 55.000 8.16 0.00 36.29 5.34
958 960 0.663153 GAATTAGGATGGCCACGCAC 59.337 55.000 8.16 0.00 36.29 5.34
959 961 0.465460 GGAATTAGGATGGCCACGCA 60.465 55.000 8.16 0.00 36.29 5.24
960 962 0.179018 AGGAATTAGGATGGCCACGC 60.179 55.000 8.16 2.41 36.29 5.34
961 963 2.632996 TCTAGGAATTAGGATGGCCACG 59.367 50.000 8.16 0.00 36.29 4.94
962 964 3.648545 AGTCTAGGAATTAGGATGGCCAC 59.351 47.826 8.16 1.35 36.29 5.01
963 965 3.941629 AGTCTAGGAATTAGGATGGCCA 58.058 45.455 8.56 8.56 36.29 5.36
964 966 5.186215 GTCTAGTCTAGGAATTAGGATGGCC 59.814 48.000 7.05 0.00 0.00 5.36
990 992 2.125961 GGAGTACATCGCCGGGAGT 61.126 63.158 2.18 2.41 0.00 3.85
1209 1223 4.634133 GACACGTCGGTCGCCACA 62.634 66.667 0.00 0.00 44.19 4.17
1427 1513 0.457853 TTCGAAGATCAAGTCGGGCG 60.458 55.000 11.90 0.00 37.84 6.13
1438 1524 5.423015 ACTGCTGTATTGTCATTCGAAGAT 58.577 37.500 3.35 0.00 35.04 2.40
1439 1525 4.820897 ACTGCTGTATTGTCATTCGAAGA 58.179 39.130 3.35 0.00 0.00 2.87
1612 1709 5.049818 GCCGGAATGTATTTCTTCAGATGAG 60.050 44.000 5.05 0.00 34.56 2.90
1671 1769 8.408601 TCTCTTTTCTTGGTTTGAATCTTTCAG 58.591 33.333 0.00 0.00 41.38 3.02
1679 1777 8.289618 CGATGTATTCTCTTTTCTTGGTTTGAA 58.710 33.333 0.00 0.00 0.00 2.69
1728 1826 4.473196 TGTGGGTTGGCTATAAGAAGATGA 59.527 41.667 0.00 0.00 0.00 2.92
1752 1850 0.976590 GAGGTAGGCGGGGTTCTTCT 60.977 60.000 0.00 0.00 0.00 2.85
1754 1852 1.229400 TGAGGTAGGCGGGGTTCTT 60.229 57.895 0.00 0.00 0.00 2.52
1764 1862 0.970937 TTCTCTGGCGGTGAGGTAGG 60.971 60.000 0.00 0.00 32.78 3.18
1772 1870 2.301870 TGACTACAATTTCTCTGGCGGT 59.698 45.455 0.00 0.00 0.00 5.68
1783 1881 3.008049 ACCGCTCCTTTCTGACTACAATT 59.992 43.478 0.00 0.00 0.00 2.32
1810 1908 2.270352 TTCCAGCCTCGTTTCACATT 57.730 45.000 0.00 0.00 0.00 2.71
1811 1909 2.086869 CATTCCAGCCTCGTTTCACAT 58.913 47.619 0.00 0.00 0.00 3.21
1812 1910 1.522668 CATTCCAGCCTCGTTTCACA 58.477 50.000 0.00 0.00 0.00 3.58
1813 1911 0.804989 CCATTCCAGCCTCGTTTCAC 59.195 55.000 0.00 0.00 0.00 3.18
1814 1912 0.960364 GCCATTCCAGCCTCGTTTCA 60.960 55.000 0.00 0.00 0.00 2.69
1815 1913 1.803289 GCCATTCCAGCCTCGTTTC 59.197 57.895 0.00 0.00 0.00 2.78
1816 1914 2.040544 CGCCATTCCAGCCTCGTTT 61.041 57.895 0.00 0.00 0.00 3.60
1817 1915 2.436646 CGCCATTCCAGCCTCGTT 60.437 61.111 0.00 0.00 0.00 3.85
1823 1921 3.737172 AACACGCGCCATTCCAGC 61.737 61.111 5.73 0.00 0.00 4.85
1824 1922 2.128853 AACAACACGCGCCATTCCAG 62.129 55.000 5.73 0.00 0.00 3.86
1825 1923 2.190170 AACAACACGCGCCATTCCA 61.190 52.632 5.73 0.00 0.00 3.53
1826 1924 1.729131 CAACAACACGCGCCATTCC 60.729 57.895 5.73 0.00 0.00 3.01
1827 1925 0.593773 AACAACAACACGCGCCATTC 60.594 50.000 5.73 0.00 0.00 2.67
1828 1926 0.869454 CAACAACAACACGCGCCATT 60.869 50.000 5.73 0.00 0.00 3.16
1829 1927 1.299014 CAACAACAACACGCGCCAT 60.299 52.632 5.73 0.00 0.00 4.40
1830 1928 2.101185 CAACAACAACACGCGCCA 59.899 55.556 5.73 0.00 0.00 5.69
1831 1929 1.515304 AACAACAACAACACGCGCC 60.515 52.632 5.73 0.00 0.00 6.53
1832 1930 1.068287 ACAACAACAACAACACGCGC 61.068 50.000 5.73 0.00 0.00 6.86
1833 1931 2.098120 CTACAACAACAACAACACGCG 58.902 47.619 3.53 3.53 0.00 6.01
1834 1932 1.843753 GCTACAACAACAACAACACGC 59.156 47.619 0.00 0.00 0.00 5.34
1835 1933 3.398954 AGCTACAACAACAACAACACG 57.601 42.857 0.00 0.00 0.00 4.49
1836 1934 5.404066 ACAAAAGCTACAACAACAACAACAC 59.596 36.000 0.00 0.00 0.00 3.32
2050 2153 2.029964 GAAAGGTGGTCGCGGTGA 59.970 61.111 6.13 0.00 0.00 4.02
2072 2175 2.847234 ACCACTCCGCCAACCTCA 60.847 61.111 0.00 0.00 0.00 3.86
2112 2215 2.892425 GAAGCCCGGATCACTGCG 60.892 66.667 0.73 0.00 35.77 5.18
2172 2275 3.545481 CGCGCTGTCACCGATCAC 61.545 66.667 5.56 0.00 0.00 3.06
2232 2335 2.832129 GTCACACATCTTGGAGGGTCTA 59.168 50.000 0.00 0.00 0.00 2.59
2396 2502 2.507992 CTTCTCTGCGCAGTCCGG 60.508 66.667 34.70 22.36 37.44 5.14
2397 2503 3.184683 GCTTCTCTGCGCAGTCCG 61.185 66.667 34.70 23.60 40.75 4.79
2421 2527 2.113986 GTGTCTGGCAAGCCCTGT 59.886 61.111 8.89 0.00 34.39 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.