Multiple sequence alignment - TraesCS6A01G300400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G300400 chr6A 100.000 3830 0 0 1 3830 533397197 533401026 0.000000e+00 7073.0
1 TraesCS6A01G300400 chr6A 93.043 115 7 1 285 399 535140115 535140228 2.370000e-37 167.0
2 TraesCS6A01G300400 chr6A 92.174 115 6 2 285 396 108945320 108945434 3.960000e-35 159.0
3 TraesCS6A01G300400 chr6A 88.333 120 12 2 3706 3824 411770288 411770406 3.990000e-30 143.0
4 TraesCS6A01G300400 chr6A 85.593 118 15 2 3708 3824 523947562 523947678 5.200000e-24 122.0
5 TraesCS6A01G300400 chr6A 85.135 74 7 4 424 495 584991166 584991095 5.310000e-09 73.1
6 TraesCS6A01G300400 chr6B 85.120 1250 66 60 532 1701 579529782 579530991 0.000000e+00 1168.0
7 TraesCS6A01G300400 chr6B 93.333 705 42 2 2407 3106 579531881 579532585 0.000000e+00 1037.0
8 TraesCS6A01G300400 chr6B 89.744 663 46 14 1703 2354 579531132 579531783 0.000000e+00 828.0
9 TraesCS6A01G300400 chr6B 87.546 273 12 8 1 267 579529456 579529712 2.890000e-76 296.0
10 TraesCS6A01G300400 chr6B 94.667 75 3 1 3157 3230 579532590 579532664 8.690000e-22 115.0
11 TraesCS6A01G300400 chr6B 95.000 40 2 0 444 483 11788897 11788936 3.190000e-06 63.9
12 TraesCS6A01G300400 chr6D 92.977 655 27 9 2394 3031 388118113 388118765 0.000000e+00 937.0
13 TraesCS6A01G300400 chr6D 86.547 892 37 43 860 1701 388116398 388117256 0.000000e+00 905.0
14 TraesCS6A01G300400 chr6D 89.039 666 53 12 1703 2355 388117369 388118027 0.000000e+00 808.0
15 TraesCS6A01G300400 chr6D 89.633 463 19 12 3385 3830 388118913 388119363 2.580000e-156 562.0
16 TraesCS6A01G300400 chr6D 84.281 299 22 15 531 816 388116109 388116395 6.310000e-68 268.0
17 TraesCS6A01G300400 chr6D 95.152 165 7 1 3067 3230 388118749 388118913 3.800000e-65 259.0
18 TraesCS6A01G300400 chr6D 88.152 211 7 6 68 267 388115833 388116036 6.400000e-58 235.0
19 TraesCS6A01G300400 chr6D 86.441 118 14 2 3708 3824 381997422 381997538 1.120000e-25 128.0
20 TraesCS6A01G300400 chr7D 89.286 224 24 0 1292 1515 135394342 135394565 8.100000e-72 281.0
21 TraesCS6A01G300400 chr7D 87.719 57 7 0 427 483 517116822 517116766 2.470000e-07 67.6
22 TraesCS6A01G300400 chr7B 88.393 224 26 0 1292 1515 97306882 97307105 1.750000e-68 270.0
23 TraesCS6A01G300400 chr7B 85.526 76 11 0 437 512 125498142 125498217 3.170000e-11 80.5
24 TraesCS6A01G300400 chr7A 88.393 224 26 0 1292 1515 134540973 134541196 1.750000e-68 270.0
25 TraesCS6A01G300400 chr7A 90.909 165 10 5 3228 3388 677696410 677696247 2.320000e-52 217.0
26 TraesCS6A01G300400 chr7A 87.027 185 19 4 3227 3408 494786992 494786810 1.800000e-48 204.0
27 TraesCS6A01G300400 chr5D 90.173 173 14 3 3225 3395 377988167 377987996 4.980000e-54 222.0
28 TraesCS6A01G300400 chr3D 91.358 162 12 2 3229 3388 10532553 10532714 1.790000e-53 220.0
29 TraesCS6A01G300400 chr3D 89.941 169 12 5 3227 3392 87925998 87926164 3.000000e-51 213.0
30 TraesCS6A01G300400 chr2A 89.941 169 15 2 3226 3392 324614922 324615090 2.320000e-52 217.0
31 TraesCS6A01G300400 chr2A 89.474 171 14 4 3229 3396 184561315 184561146 3.000000e-51 213.0
32 TraesCS6A01G300400 chr2A 89.535 172 11 6 3226 3394 746803156 746803323 1.080000e-50 211.0
33 TraesCS6A01G300400 chr2A 82.114 123 18 4 3706 3826 763426679 763426799 6.770000e-18 102.0
34 TraesCS6A01G300400 chr4D 90.000 170 12 4 3225 3391 401095864 401095697 8.330000e-52 215.0
35 TraesCS6A01G300400 chr4D 85.950 121 14 3 3705 3823 500822421 500822302 4.020000e-25 126.0
36 TraesCS6A01G300400 chr5A 95.192 104 5 0 285 388 75061436 75061539 8.510000e-37 165.0
37 TraesCS6A01G300400 chr3B 96.040 101 4 0 285 385 34228417 34228517 8.510000e-37 165.0
38 TraesCS6A01G300400 chr3B 95.192 104 5 0 285 388 113298396 113298293 8.510000e-37 165.0
39 TraesCS6A01G300400 chr3B 92.857 112 7 1 285 396 727744952 727744842 1.100000e-35 161.0
40 TraesCS6A01G300400 chr3B 88.136 59 6 1 424 481 815365225 815365283 6.870000e-08 69.4
41 TraesCS6A01G300400 chr5B 92.308 117 6 3 285 398 235842284 235842400 3.060000e-36 163.0
42 TraesCS6A01G300400 chr5B 88.333 120 12 2 3706 3824 278229792 278229910 3.990000e-30 143.0
43 TraesCS6A01G300400 chr3A 92.105 114 7 2 285 397 308675926 308676038 3.960000e-35 159.0
44 TraesCS6A01G300400 chr3A 86.719 128 12 4 3706 3829 208033701 208033827 1.860000e-28 137.0
45 TraesCS6A01G300400 chr2B 93.396 106 6 1 285 389 30633055 30633160 5.120000e-34 156.0
46 TraesCS6A01G300400 chr2B 91.111 45 4 0 437 481 712963705 712963749 1.150000e-05 62.1
47 TraesCS6A01G300400 chr4A 87.603 121 10 5 3706 3824 48887428 48887311 6.670000e-28 135.0
48 TraesCS6A01G300400 chr1B 88.000 50 5 1 446 495 571425607 571425559 1.490000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G300400 chr6A 533397197 533401026 3829 False 7073.000000 7073 100.000000 1 3830 1 chr6A.!!$F4 3829
1 TraesCS6A01G300400 chr6B 579529456 579532664 3208 False 688.800000 1168 90.082000 1 3230 5 chr6B.!!$F2 3229
2 TraesCS6A01G300400 chr6D 388115833 388119363 3530 False 567.714286 937 89.397286 68 3830 7 chr6D.!!$F2 3762

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 285 0.173255 CCCGCATTTCTTCCGCATTT 59.827 50.000 0.00 0.00 0.00 2.32 F
507 521 0.395312 AAGCTTTTCCGAACGGAGGA 59.605 50.000 15.34 6.67 46.06 3.71 F
869 921 1.152546 GAGCCTCCTCCTCTCCTCC 60.153 68.421 0.00 0.00 31.68 4.30 F
1597 1709 0.456628 TCGATCCGTCCAAATGCGTA 59.543 50.000 0.00 0.00 0.00 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1348 1460 0.035458 CACTTCTTGGCCTCCTCGTT 59.965 55.0 3.32 0.0 0.00 3.85 R
1525 1637 0.172352 GAAGAGAGGAGAGGTGCGTG 59.828 60.0 0.00 0.0 0.00 5.34 R
2107 2368 1.025041 TCCTGACGACCTCATCATCG 58.975 55.0 0.00 0.0 43.97 3.84 R
3133 3456 0.698238 CCAAGGTCATTCCACTCCCA 59.302 55.0 0.00 0.0 39.02 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.058525 ACCATGACATGTGAACTATGATCAAT 58.941 34.615 14.26 0.00 0.00 2.57
41 42 8.212995 ACCATGACATGTGAACTATGATCAATA 58.787 33.333 14.26 0.00 0.00 1.90
42 43 8.718734 CCATGACATGTGAACTATGATCAATAG 58.281 37.037 14.26 5.16 43.54 1.73
114 115 4.027437 ACCCCACTCTTCTTCTGTCTATC 58.973 47.826 0.00 0.00 0.00 2.08
115 116 4.264623 ACCCCACTCTTCTTCTGTCTATCT 60.265 45.833 0.00 0.00 0.00 1.98
116 117 4.099266 CCCCACTCTTCTTCTGTCTATCTG 59.901 50.000 0.00 0.00 0.00 2.90
118 119 5.163561 CCCACTCTTCTTCTGTCTATCTGTC 60.164 48.000 0.00 0.00 0.00 3.51
119 120 5.652014 CCACTCTTCTTCTGTCTATCTGTCT 59.348 44.000 0.00 0.00 0.00 3.41
120 121 6.826231 CCACTCTTCTTCTGTCTATCTGTCTA 59.174 42.308 0.00 0.00 0.00 2.59
141 142 9.621629 TGTCTATTAAAGAAAGACAGGAAAACA 57.378 29.630 0.46 0.00 43.45 2.83
204 218 5.486526 AGAAAAGCCACTCTGTCTAATCTG 58.513 41.667 0.00 0.00 0.00 2.90
267 281 1.823899 ATCCCCGCATTTCTTCCGC 60.824 57.895 0.00 0.00 0.00 5.54
268 282 2.550699 ATCCCCGCATTTCTTCCGCA 62.551 55.000 0.00 0.00 0.00 5.69
269 283 2.120909 CCCCGCATTTCTTCCGCAT 61.121 57.895 0.00 0.00 0.00 4.73
270 284 1.666209 CCCCGCATTTCTTCCGCATT 61.666 55.000 0.00 0.00 0.00 3.56
271 285 0.173255 CCCGCATTTCTTCCGCATTT 59.827 50.000 0.00 0.00 0.00 2.32
272 286 1.548986 CCGCATTTCTTCCGCATTTC 58.451 50.000 0.00 0.00 0.00 2.17
274 288 2.415893 CCGCATTTCTTCCGCATTTCTT 60.416 45.455 0.00 0.00 0.00 2.52
275 289 2.848302 CGCATTTCTTCCGCATTTCTTC 59.152 45.455 0.00 0.00 0.00 2.87
276 290 3.182182 GCATTTCTTCCGCATTTCTTCC 58.818 45.455 0.00 0.00 0.00 3.46
277 291 3.429085 CATTTCTTCCGCATTTCTTCCG 58.571 45.455 0.00 0.00 0.00 4.30
278 292 2.178912 TTCTTCCGCATTTCTTCCGT 57.821 45.000 0.00 0.00 0.00 4.69
279 293 1.722011 TCTTCCGCATTTCTTCCGTC 58.278 50.000 0.00 0.00 0.00 4.79
280 294 0.727398 CTTCCGCATTTCTTCCGTCC 59.273 55.000 0.00 0.00 0.00 4.79
281 295 1.017177 TTCCGCATTTCTTCCGTCCG 61.017 55.000 0.00 0.00 0.00 4.79
282 296 2.399611 CGCATTTCTTCCGTCCGC 59.600 61.111 0.00 0.00 0.00 5.54
284 298 1.134694 GCATTTCTTCCGTCCGCAC 59.865 57.895 0.00 0.00 0.00 5.34
285 299 1.298859 GCATTTCTTCCGTCCGCACT 61.299 55.000 0.00 0.00 0.00 4.40
286 300 0.721718 CATTTCTTCCGTCCGCACTC 59.278 55.000 0.00 0.00 0.00 3.51
287 301 0.608640 ATTTCTTCCGTCCGCACTCT 59.391 50.000 0.00 0.00 0.00 3.24
289 303 1.461091 TTCTTCCGTCCGCACTCTGT 61.461 55.000 0.00 0.00 0.00 3.41
290 304 1.006102 CTTCCGTCCGCACTCTGTT 60.006 57.895 0.00 0.00 0.00 3.16
291 305 1.006571 TTCCGTCCGCACTCTGTTC 60.007 57.895 0.00 0.00 0.00 3.18
293 307 2.805353 CGTCCGCACTCTGTTCGG 60.805 66.667 2.59 2.59 43.14 4.30
295 309 3.450507 TCCGCACTCTGTTCGGAA 58.549 55.556 8.82 0.00 46.74 4.30
296 310 1.972198 TCCGCACTCTGTTCGGAAT 59.028 52.632 8.82 0.00 46.74 3.01
298 312 1.546923 TCCGCACTCTGTTCGGAATTA 59.453 47.619 8.82 0.00 46.74 1.40
299 313 1.659098 CCGCACTCTGTTCGGAATTAC 59.341 52.381 2.85 0.00 44.42 1.89
301 315 2.993899 CGCACTCTGTTCGGAATTACTT 59.006 45.455 0.00 0.00 0.00 2.24
302 316 3.181530 CGCACTCTGTTCGGAATTACTTG 60.182 47.826 0.00 0.00 0.00 3.16
303 317 3.746492 GCACTCTGTTCGGAATTACTTGT 59.254 43.478 0.00 0.00 0.00 3.16
304 318 4.143094 GCACTCTGTTCGGAATTACTTGTC 60.143 45.833 0.00 0.00 0.00 3.18
305 319 4.090066 CACTCTGTTCGGAATTACTTGTCG 59.910 45.833 0.00 0.00 0.00 4.35
307 321 2.734606 CTGTTCGGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
308 322 3.132160 TGTTCGGAATTACTTGTCGCAA 58.868 40.909 0.00 0.00 0.00 4.85
309 323 3.560481 TGTTCGGAATTACTTGTCGCAAA 59.440 39.130 0.00 0.00 0.00 3.68
310 324 4.035324 TGTTCGGAATTACTTGTCGCAAAA 59.965 37.500 0.00 0.00 0.00 2.44
311 325 4.815040 TCGGAATTACTTGTCGCAAAAA 57.185 36.364 0.00 0.00 0.00 1.94
312 326 5.365403 TCGGAATTACTTGTCGCAAAAAT 57.635 34.783 0.00 0.00 0.00 1.82
314 328 4.323336 CGGAATTACTTGTCGCAAAAATGG 59.677 41.667 0.00 0.00 0.00 3.16
315 329 5.465935 GGAATTACTTGTCGCAAAAATGGA 58.534 37.500 0.00 0.00 0.00 3.41
316 330 6.099341 GGAATTACTTGTCGCAAAAATGGAT 58.901 36.000 0.00 0.00 0.00 3.41
317 331 6.034898 GGAATTACTTGTCGCAAAAATGGATG 59.965 38.462 0.00 0.00 0.00 3.51
318 332 5.446143 TTACTTGTCGCAAAAATGGATGT 57.554 34.783 0.00 0.00 0.00 3.06
319 333 6.561737 TTACTTGTCGCAAAAATGGATGTA 57.438 33.333 0.00 0.00 0.00 2.29
320 334 5.643379 ACTTGTCGCAAAAATGGATGTAT 57.357 34.783 0.00 0.00 0.00 2.29
321 335 5.640732 ACTTGTCGCAAAAATGGATGTATC 58.359 37.500 0.00 0.00 0.00 2.24
322 336 5.415701 ACTTGTCGCAAAAATGGATGTATCT 59.584 36.000 0.00 0.00 0.00 1.98
324 338 6.603237 TGTCGCAAAAATGGATGTATCTAG 57.397 37.500 0.00 0.00 0.00 2.43
325 339 6.345298 TGTCGCAAAAATGGATGTATCTAGA 58.655 36.000 0.00 0.00 0.00 2.43
326 340 6.992123 TGTCGCAAAAATGGATGTATCTAGAT 59.008 34.615 10.73 10.73 0.00 1.98
327 341 7.041848 TGTCGCAAAAATGGATGTATCTAGATG 60.042 37.037 15.79 0.00 0.00 2.90
328 342 6.992123 TCGCAAAAATGGATGTATCTAGATGT 59.008 34.615 15.79 1.25 0.00 3.06
329 343 8.147704 TCGCAAAAATGGATGTATCTAGATGTA 58.852 33.333 15.79 4.44 0.00 2.29
330 344 8.939929 CGCAAAAATGGATGTATCTAGATGTAT 58.060 33.333 15.79 9.11 0.00 2.29
371 385 9.616634 CATCCATATTCAAGACAAATAATTCCG 57.383 33.333 0.00 0.00 0.00 4.30
372 386 8.972458 TCCATATTCAAGACAAATAATTCCGA 57.028 30.769 0.00 0.00 0.00 4.55
373 387 9.402320 TCCATATTCAAGACAAATAATTCCGAA 57.598 29.630 0.00 0.00 0.00 4.30
377 391 7.695480 TTCAAGACAAATAATTCCGAATGGA 57.305 32.000 0.00 0.00 44.61 3.41
387 401 2.544844 TCCGAATGGAGGGAGTAGTT 57.455 50.000 0.00 0.00 40.17 2.24
388 402 3.675348 TCCGAATGGAGGGAGTAGTTA 57.325 47.619 0.00 0.00 40.17 2.24
389 403 3.985127 TCCGAATGGAGGGAGTAGTTAA 58.015 45.455 0.00 0.00 40.17 2.01
390 404 3.703052 TCCGAATGGAGGGAGTAGTTAAC 59.297 47.826 0.00 0.00 40.17 2.01
391 405 3.705072 CCGAATGGAGGGAGTAGTTAACT 59.295 47.826 13.68 13.68 38.37 2.24
392 406 4.891756 CCGAATGGAGGGAGTAGTTAACTA 59.108 45.833 11.38 11.38 36.33 2.24
393 407 5.009811 CCGAATGGAGGGAGTAGTTAACTAG 59.990 48.000 15.68 0.00 36.33 2.57
394 408 5.593502 CGAATGGAGGGAGTAGTTAACTAGT 59.406 44.000 20.57 20.57 39.07 2.57
395 409 6.769822 CGAATGGAGGGAGTAGTTAACTAGTA 59.230 42.308 20.50 6.85 39.07 1.82
396 410 7.255070 CGAATGGAGGGAGTAGTTAACTAGTAC 60.255 44.444 20.52 20.52 39.07 2.73
397 411 6.649041 TGGAGGGAGTAGTTAACTAGTACT 57.351 41.667 25.37 22.25 44.05 2.73
434 448 7.575414 AAAAACTTGTCCCAAACTTGTTTTT 57.425 28.000 0.00 0.00 42.23 1.94
504 518 5.441709 AAAAATAAGCTTTTCCGAACGGA 57.558 34.783 12.04 12.04 43.52 4.69
505 519 4.680171 AAATAAGCTTTTCCGAACGGAG 57.320 40.909 15.34 6.36 46.06 4.63
506 520 2.088950 TAAGCTTTTCCGAACGGAGG 57.911 50.000 15.34 11.04 46.06 4.30
507 521 0.395312 AAGCTTTTCCGAACGGAGGA 59.605 50.000 15.34 6.67 46.06 3.71
508 522 0.395312 AGCTTTTCCGAACGGAGGAA 59.605 50.000 15.34 13.05 46.06 3.36
514 528 2.133281 TCCGAACGGAGGAAGTATCA 57.867 50.000 12.04 0.00 39.76 2.15
515 529 1.747355 TCCGAACGGAGGAAGTATCAC 59.253 52.381 12.04 0.00 39.76 3.06
516 530 1.475280 CCGAACGGAGGAAGTATCACA 59.525 52.381 7.53 0.00 37.50 3.58
517 531 2.094390 CCGAACGGAGGAAGTATCACAA 60.094 50.000 7.53 0.00 37.50 3.33
518 532 3.581755 CGAACGGAGGAAGTATCACAAA 58.418 45.455 0.00 0.00 0.00 2.83
519 533 3.367025 CGAACGGAGGAAGTATCACAAAC 59.633 47.826 0.00 0.00 0.00 2.93
520 534 4.312443 GAACGGAGGAAGTATCACAAACA 58.688 43.478 0.00 0.00 0.00 2.83
521 535 4.345859 ACGGAGGAAGTATCACAAACAA 57.654 40.909 0.00 0.00 0.00 2.83
522 536 4.710324 ACGGAGGAAGTATCACAAACAAA 58.290 39.130 0.00 0.00 0.00 2.83
523 537 5.313712 ACGGAGGAAGTATCACAAACAAAT 58.686 37.500 0.00 0.00 0.00 2.32
524 538 5.411669 ACGGAGGAAGTATCACAAACAAATC 59.588 40.000 0.00 0.00 0.00 2.17
525 539 5.163754 CGGAGGAAGTATCACAAACAAATCC 60.164 44.000 0.00 0.00 0.00 3.01
526 540 5.946377 GGAGGAAGTATCACAAACAAATCCT 59.054 40.000 0.00 0.00 37.48 3.24
527 541 6.127897 GGAGGAAGTATCACAAACAAATCCTG 60.128 42.308 0.00 0.00 35.03 3.86
528 542 5.711976 AGGAAGTATCACAAACAAATCCTGG 59.288 40.000 0.00 0.00 33.68 4.45
529 543 5.476945 GGAAGTATCACAAACAAATCCTGGT 59.523 40.000 0.00 0.00 0.00 4.00
555 569 1.301716 CCAAGTCCAGGTGTCCGTG 60.302 63.158 0.00 0.00 0.00 4.94
590 610 1.620819 ACCGCTCCTATAATCCAGCAG 59.379 52.381 0.00 0.00 0.00 4.24
684 714 1.270094 ACGCACCGAATCAGACAAGAA 60.270 47.619 0.00 0.00 0.00 2.52
685 715 1.391485 CGCACCGAATCAGACAAGAAG 59.609 52.381 0.00 0.00 0.00 2.85
747 780 1.601759 CAACCCCTCCACTGCACTG 60.602 63.158 0.00 0.00 0.00 3.66
751 784 2.429058 CCTCCACTGCACTGCTGT 59.571 61.111 7.69 7.69 41.16 4.40
754 787 1.339438 CCTCCACTGCACTGCTGTATT 60.339 52.381 12.69 0.00 38.59 1.89
833 885 2.671682 GGTCACCTTCTCTGGCCC 59.328 66.667 0.00 0.00 0.00 5.80
869 921 1.152546 GAGCCTCCTCCTCTCCTCC 60.153 68.421 0.00 0.00 31.68 4.30
870 922 1.938596 AGCCTCCTCCTCTCCTCCA 60.939 63.158 0.00 0.00 0.00 3.86
874 926 3.522731 CCTCCTCTCCTCCACGCG 61.523 72.222 3.53 3.53 0.00 6.01
875 927 2.752238 CTCCTCTCCTCCACGCGT 60.752 66.667 5.58 5.58 0.00 6.01
888 940 4.123046 CGCGTGCGTGCATAAAAA 57.877 50.000 6.00 0.00 34.15 1.94
889 941 1.972801 CGCGTGCGTGCATAAAAAG 59.027 52.632 6.00 0.00 34.15 2.27
943 1020 3.807538 GCGCACCAGCACATCCAG 61.808 66.667 0.30 0.00 42.27 3.86
982 1059 3.649986 GCACACGGGCAGACACAC 61.650 66.667 0.00 0.00 0.00 3.82
983 1060 3.337889 CACACGGGCAGACACACG 61.338 66.667 0.00 0.00 0.00 4.49
984 1061 3.533105 ACACGGGCAGACACACGA 61.533 61.111 0.00 0.00 0.00 4.35
992 1069 1.663702 CAGACACACGAACCGGACC 60.664 63.158 9.46 0.00 0.00 4.46
993 1070 2.732094 GACACACGAACCGGACCG 60.732 66.667 9.46 13.91 0.00 4.79
1242 1322 8.388484 TCGAGGTAAACATCTTATACTCCTAC 57.612 38.462 0.00 0.00 0.00 3.18
1243 1323 8.216423 TCGAGGTAAACATCTTATACTCCTACT 58.784 37.037 0.00 0.00 0.00 2.57
1244 1324 8.291032 CGAGGTAAACATCTTATACTCCTACTG 58.709 40.741 0.00 0.00 0.00 2.74
1245 1325 8.480133 AGGTAAACATCTTATACTCCTACTGG 57.520 38.462 0.00 0.00 0.00 4.00
1246 1326 7.509659 AGGTAAACATCTTATACTCCTACTGGG 59.490 40.741 0.00 0.00 0.00 4.45
1251 1358 6.103501 ACATCTTATACTCCTACTGGGTCTCT 59.896 42.308 0.00 0.00 36.25 3.10
1252 1359 6.593759 TCTTATACTCCTACTGGGTCTCTT 57.406 41.667 0.00 0.00 36.25 2.85
1253 1360 6.982899 TCTTATACTCCTACTGGGTCTCTTT 58.017 40.000 0.00 0.00 36.25 2.52
1268 1375 1.884926 CTTTCTCGCCTGATCCGGC 60.885 63.158 17.61 17.61 46.68 6.13
1524 1636 2.338620 CGCAAGGTCAGTCGGTCA 59.661 61.111 0.00 0.00 0.00 4.02
1525 1637 2.022129 CGCAAGGTCAGTCGGTCAC 61.022 63.158 0.00 0.00 0.00 3.67
1526 1638 1.069090 GCAAGGTCAGTCGGTCACA 59.931 57.895 0.00 0.00 0.00 3.58
1527 1639 1.222115 GCAAGGTCAGTCGGTCACAC 61.222 60.000 0.00 0.00 0.00 3.82
1528 1640 0.939577 CAAGGTCAGTCGGTCACACG 60.940 60.000 0.00 0.00 0.00 4.49
1529 1641 2.694829 AAGGTCAGTCGGTCACACGC 62.695 60.000 0.00 0.00 0.00 5.34
1530 1642 2.027024 GTCAGTCGGTCACACGCA 59.973 61.111 0.00 0.00 0.00 5.24
1563 1675 4.286320 ATCCATCGTCCGCGCTCC 62.286 66.667 5.56 0.00 38.14 4.70
1570 1682 2.861006 GTCCGCGCTCCAGAAAAC 59.139 61.111 5.56 0.00 0.00 2.43
1579 1691 1.281899 CTCCAGAAAACGCGGATCTC 58.718 55.000 12.47 0.86 0.00 2.75
1593 1705 2.408050 GGATCTCGATCCGTCCAAATG 58.592 52.381 9.99 0.00 46.84 2.32
1594 1706 1.795286 GATCTCGATCCGTCCAAATGC 59.205 52.381 0.00 0.00 31.76 3.56
1595 1707 0.527600 TCTCGATCCGTCCAAATGCG 60.528 55.000 0.00 0.00 0.00 4.73
1596 1708 0.806102 CTCGATCCGTCCAAATGCGT 60.806 55.000 0.00 0.00 0.00 5.24
1597 1709 0.456628 TCGATCCGTCCAAATGCGTA 59.543 50.000 0.00 0.00 0.00 4.42
1598 1710 1.067974 TCGATCCGTCCAAATGCGTAT 59.932 47.619 0.00 0.00 0.00 3.06
1599 1711 1.455786 CGATCCGTCCAAATGCGTATC 59.544 52.381 0.00 0.00 0.00 2.24
1600 1712 2.755650 GATCCGTCCAAATGCGTATCT 58.244 47.619 0.00 0.00 0.00 1.98
1601 1713 2.218953 TCCGTCCAAATGCGTATCTC 57.781 50.000 0.00 0.00 0.00 2.75
1602 1714 1.754803 TCCGTCCAAATGCGTATCTCT 59.245 47.619 0.00 0.00 0.00 3.10
1603 1715 1.860950 CCGTCCAAATGCGTATCTCTG 59.139 52.381 0.00 0.00 0.00 3.35
1604 1716 1.258982 CGTCCAAATGCGTATCTCTGC 59.741 52.381 0.00 0.00 0.00 4.26
1605 1717 1.599542 GTCCAAATGCGTATCTCTGCC 59.400 52.381 0.00 0.00 0.00 4.85
1606 1718 0.947244 CCAAATGCGTATCTCTGCCC 59.053 55.000 0.00 0.00 0.00 5.36
1607 1719 1.667236 CAAATGCGTATCTCTGCCCA 58.333 50.000 0.00 0.00 0.00 5.36
1608 1720 2.016318 CAAATGCGTATCTCTGCCCAA 58.984 47.619 0.00 0.00 0.00 4.12
1609 1721 2.418368 AATGCGTATCTCTGCCCAAA 57.582 45.000 0.00 0.00 0.00 3.28
1610 1722 2.645838 ATGCGTATCTCTGCCCAAAT 57.354 45.000 0.00 0.00 0.00 2.32
1611 1723 1.953559 TGCGTATCTCTGCCCAAATC 58.046 50.000 0.00 0.00 0.00 2.17
1623 1735 5.569355 TCTGCCCAAATCTACAAAATCTCA 58.431 37.500 0.00 0.00 0.00 3.27
1675 1787 0.610687 GATATCCTTCCCAGCTCCCG 59.389 60.000 0.00 0.00 0.00 5.14
1677 1789 2.252012 TATCCTTCCCAGCTCCCGGT 62.252 60.000 0.00 0.00 0.00 5.28
1701 1813 7.148787 GGTCCGTTAATATGTGAATCTTCGATC 60.149 40.741 0.00 0.00 0.00 3.69
1712 1963 6.128742 TGTGAATCTTCGATCATTATCATGCG 60.129 38.462 0.00 0.00 31.93 4.73
1771 2022 7.698836 ATTCACGAAATGTTTTTCTTTCCTG 57.301 32.000 0.00 0.00 39.30 3.86
1772 2023 6.202516 TCACGAAATGTTTTTCTTTCCTGT 57.797 33.333 0.00 0.00 39.30 4.00
1783 2040 4.715534 TTCTTTCCTGTTACATCCCACA 57.284 40.909 0.00 0.00 0.00 4.17
1806 2064 6.605849 CACTTTTGGTGTCATGATTAGACAG 58.394 40.000 0.00 0.00 45.77 3.51
1813 2071 6.580963 GTGTCATGATTAGACAGCACTTAG 57.419 41.667 0.00 0.00 45.77 2.18
1816 2074 4.962362 TCATGATTAGACAGCACTTAGGGA 59.038 41.667 0.00 0.00 0.00 4.20
1823 2081 3.901844 AGACAGCACTTAGGGACACTTTA 59.098 43.478 0.00 0.00 0.00 1.85
1828 2086 3.995048 GCACTTAGGGACACTTTACACTC 59.005 47.826 0.00 0.00 0.00 3.51
1847 2107 7.659652 ACACTCTGTTATTCTTCAGTTAAGC 57.340 36.000 0.00 0.00 34.97 3.09
1849 2109 8.585881 ACACTCTGTTATTCTTCAGTTAAGCTA 58.414 33.333 0.00 0.00 34.97 3.32
1860 2120 9.534565 TTCTTCAGTTAAGCTATCATGATGTAC 57.465 33.333 18.72 7.33 34.97 2.90
1921 2181 9.703892 ATCTAATAAGACGATTCCAATTCTGAG 57.296 33.333 0.00 0.00 33.57 3.35
1955 2216 4.870123 AATTGCTGCTAATGAACACCAA 57.130 36.364 0.00 0.00 0.00 3.67
2072 2333 1.251251 GGCACACTCTGAAGCCAAAT 58.749 50.000 0.00 0.00 40.14 2.32
2080 2341 5.239525 ACACTCTGAAGCCAAATTACTCAAC 59.760 40.000 0.00 0.00 0.00 3.18
2107 2368 0.246635 TCAACGAGAAGGCCTACAGC 59.753 55.000 5.16 0.00 42.60 4.40
2117 2378 0.320247 GGCCTACAGCGATGATGAGG 60.320 60.000 8.12 12.01 45.17 3.86
2134 2395 1.135333 GAGGTCGTCAGGATTCTCACC 59.865 57.143 0.00 0.00 31.92 4.02
2203 2464 0.693049 AGTTCAGTCACCCCATCACC 59.307 55.000 0.00 0.00 0.00 4.02
2241 2502 2.743636 TTCACCTCCTTGCTTACTCG 57.256 50.000 0.00 0.00 0.00 4.18
2242 2503 0.246635 TCACCTCCTTGCTTACTCGC 59.753 55.000 0.00 0.00 0.00 5.03
2247 2508 2.417719 CTCCTTGCTTACTCGCAGTTT 58.582 47.619 0.00 0.00 41.55 2.66
2287 2551 8.873830 CATTCGAAGACAAATACACATCTTACT 58.126 33.333 3.35 0.00 34.32 2.24
2290 2554 8.737175 TCGAAGACAAATACACATCTTACTACT 58.263 33.333 0.00 0.00 31.58 2.57
2337 2601 8.269424 GCGTTTGAGTTGAACTATGTCATATAG 58.731 37.037 0.00 0.00 0.00 1.31
2370 2663 3.818295 AATTGGGTAGGCACTGGTAAA 57.182 42.857 0.00 0.00 41.52 2.01
2376 2669 4.202631 TGGGTAGGCACTGGTAAAAGAAAT 60.203 41.667 0.00 0.00 41.52 2.17
2380 2673 4.985538 AGGCACTGGTAAAAGAAATCTGA 58.014 39.130 0.00 0.00 37.18 3.27
2385 2678 7.370383 GCACTGGTAAAAGAAATCTGATTCAA 58.630 34.615 2.92 0.00 0.00 2.69
2386 2679 7.327032 GCACTGGTAAAAGAAATCTGATTCAAC 59.673 37.037 2.92 0.00 0.00 3.18
2391 2684 9.780413 GGTAAAAGAAATCTGATTCAACTGATC 57.220 33.333 2.92 0.00 0.00 2.92
2397 2690 8.838365 AGAAATCTGATTCAACTGATCTATTGC 58.162 33.333 2.92 0.00 0.00 3.56
2403 2696 6.539826 TGATTCAACTGATCTATTGCGTTCAT 59.460 34.615 0.00 0.00 0.00 2.57
2404 2697 6.741992 TTCAACTGATCTATTGCGTTCATT 57.258 33.333 0.00 0.00 0.00 2.57
2409 2716 7.470289 ACTGATCTATTGCGTTCATTAAGAC 57.530 36.000 0.00 0.00 0.00 3.01
2414 2721 8.942338 ATCTATTGCGTTCATTAAGACACTTA 57.058 30.769 0.00 0.00 0.00 2.24
2421 2728 6.255887 GCGTTCATTAAGACACTTATACTGCT 59.744 38.462 0.00 0.00 0.00 4.24
2424 2731 9.151471 GTTCATTAAGACACTTATACTGCTCAA 57.849 33.333 0.00 0.00 0.00 3.02
2433 2740 8.942338 ACACTTATACTGCTCAAAATTATCGA 57.058 30.769 0.00 0.00 0.00 3.59
2458 2765 9.793245 GAAAACCAAATGATTATACGTCGATAG 57.207 33.333 0.00 0.00 0.00 2.08
2568 2890 2.143925 GACCCAAAGAACGAGTTCCTG 58.856 52.381 11.87 9.71 40.33 3.86
2577 2899 0.680061 ACGAGTTCCTGTCAACCCTC 59.320 55.000 0.00 0.00 0.00 4.30
2697 3019 1.153628 GGTCATAACCACTCGCGCT 60.154 57.895 5.56 0.00 45.68 5.92
2833 3155 1.990060 GGGGCAGAGTACTGAGGCA 60.990 63.158 16.40 0.00 46.03 4.75
2949 3272 0.385751 ATGGCAGTACTCGTCCGATG 59.614 55.000 0.00 0.00 0.00 3.84
2951 3274 0.454600 GGCAGTACTCGTCCGATGAA 59.545 55.000 0.00 0.00 0.00 2.57
2990 3313 8.347771 GTCATTTGAGCTGCAGAAATATCATTA 58.652 33.333 20.43 4.86 0.00 1.90
3025 3348 9.436957 TGAAGTTTACTCCAGATTCAGAATAAC 57.563 33.333 0.00 0.00 0.00 1.89
3045 3368 8.860780 AATAACCATTTGCATTGGTGTTATTT 57.139 26.923 19.40 7.98 46.75 1.40
3048 3371 7.200778 ACCATTTGCATTGGTGTTATTTTTC 57.799 32.000 18.32 0.00 45.71 2.29
3056 3379 6.472163 GCATTGGTGTTATTTTTCGTAGGATG 59.528 38.462 0.00 0.00 0.00 3.51
3061 3384 6.248631 GTGTTATTTTTCGTAGGATGCTCAC 58.751 40.000 0.00 0.00 0.00 3.51
3075 3398 6.004574 AGGATGCTCACGTCTATACAGAATA 58.995 40.000 0.00 0.00 30.85 1.75
3153 3476 0.681243 GGGAGTGGAATGACCTTGGC 60.681 60.000 0.00 0.00 39.86 4.52
3168 3491 5.723887 TGACCTTGGCCAATTTAAATGGTAT 59.276 36.000 20.85 0.00 40.23 2.73
3230 3554 5.914898 AAAACCCAACTGGCTGATTATAC 57.085 39.130 0.00 0.00 37.83 1.47
3231 3555 3.577805 ACCCAACTGGCTGATTATACC 57.422 47.619 0.00 0.00 37.83 2.73
3232 3556 2.174854 ACCCAACTGGCTGATTATACCC 59.825 50.000 0.00 0.00 37.83 3.69
3233 3557 2.489073 CCCAACTGGCTGATTATACCCC 60.489 54.545 0.00 0.00 0.00 4.95
3234 3558 2.489073 CCAACTGGCTGATTATACCCCC 60.489 54.545 0.00 0.00 0.00 5.40
3235 3559 2.443255 CAACTGGCTGATTATACCCCCT 59.557 50.000 0.00 0.00 0.00 4.79
3236 3560 2.339769 ACTGGCTGATTATACCCCCTC 58.660 52.381 0.00 0.00 0.00 4.30
3237 3561 1.630878 CTGGCTGATTATACCCCCTCC 59.369 57.143 0.00 0.00 0.00 4.30
3238 3562 1.225694 TGGCTGATTATACCCCCTCCT 59.774 52.381 0.00 0.00 0.00 3.69
3239 3563 2.349445 GGCTGATTATACCCCCTCCTT 58.651 52.381 0.00 0.00 0.00 3.36
3240 3564 2.716969 GGCTGATTATACCCCCTCCTTT 59.283 50.000 0.00 0.00 0.00 3.11
3241 3565 3.244946 GGCTGATTATACCCCCTCCTTTC 60.245 52.174 0.00 0.00 0.00 2.62
3242 3566 3.244946 GCTGATTATACCCCCTCCTTTCC 60.245 52.174 0.00 0.00 0.00 3.13
3243 3567 4.243643 CTGATTATACCCCCTCCTTTCCT 58.756 47.826 0.00 0.00 0.00 3.36
3244 3568 5.412384 CTGATTATACCCCCTCCTTTCCTA 58.588 45.833 0.00 0.00 0.00 2.94
3245 3569 5.806259 TGATTATACCCCCTCCTTTCCTAA 58.194 41.667 0.00 0.00 0.00 2.69
3246 3570 6.221850 TGATTATACCCCCTCCTTTCCTAAA 58.778 40.000 0.00 0.00 0.00 1.85
3247 3571 6.860480 TGATTATACCCCCTCCTTTCCTAAAT 59.140 38.462 0.00 0.00 0.00 1.40
3248 3572 8.026304 TGATTATACCCCCTCCTTTCCTAAATA 58.974 37.037 0.00 0.00 0.00 1.40
3249 3573 9.070210 GATTATACCCCCTCCTTTCCTAAATAT 57.930 37.037 0.00 0.00 0.00 1.28
3251 3575 9.932740 TTATACCCCCTCCTTTCCTAAATATAA 57.067 33.333 0.00 0.00 0.00 0.98
3252 3576 6.781857 ACCCCCTCCTTTCCTAAATATAAG 57.218 41.667 0.00 0.00 0.00 1.73
3253 3577 6.225666 ACCCCCTCCTTTCCTAAATATAAGT 58.774 40.000 0.00 0.00 0.00 2.24
3254 3578 6.332103 ACCCCCTCCTTTCCTAAATATAAGTC 59.668 42.308 0.00 0.00 0.00 3.01
3255 3579 6.562993 CCCCCTCCTTTCCTAAATATAAGTCT 59.437 42.308 0.00 0.00 0.00 3.24
3256 3580 7.073853 CCCCCTCCTTTCCTAAATATAAGTCTT 59.926 40.741 0.00 0.00 0.00 3.01
3257 3581 8.503573 CCCCTCCTTTCCTAAATATAAGTCTTT 58.496 37.037 0.00 0.00 0.00 2.52
3258 3582 9.562408 CCCTCCTTTCCTAAATATAAGTCTTTC 57.438 37.037 0.00 0.00 0.00 2.62
3275 3599 8.558973 AAGTCTTTCTAGAGATTCCAATTGTG 57.441 34.615 4.43 0.00 0.00 3.33
3276 3600 7.911651 AGTCTTTCTAGAGATTCCAATTGTGA 58.088 34.615 4.43 0.00 0.00 3.58
3277 3601 7.821846 AGTCTTTCTAGAGATTCCAATTGTGAC 59.178 37.037 4.43 0.00 0.00 3.67
3278 3602 7.821846 GTCTTTCTAGAGATTCCAATTGTGACT 59.178 37.037 4.43 0.00 0.00 3.41
3279 3603 9.035890 TCTTTCTAGAGATTCCAATTGTGACTA 57.964 33.333 4.43 0.00 0.00 2.59
3280 3604 9.092876 CTTTCTAGAGATTCCAATTGTGACTAC 57.907 37.037 4.43 0.00 0.00 2.73
3281 3605 7.718334 TCTAGAGATTCCAATTGTGACTACA 57.282 36.000 4.43 0.00 34.31 2.74
3282 3606 8.311395 TCTAGAGATTCCAATTGTGACTACAT 57.689 34.615 4.43 0.00 36.53 2.29
3283 3607 9.421399 TCTAGAGATTCCAATTGTGACTACATA 57.579 33.333 4.43 0.00 36.53 2.29
3284 3608 9.469807 CTAGAGATTCCAATTGTGACTACATAC 57.530 37.037 4.43 0.00 36.53 2.39
3285 3609 6.980978 AGAGATTCCAATTGTGACTACATACG 59.019 38.462 4.43 0.00 36.53 3.06
3286 3610 6.049149 AGATTCCAATTGTGACTACATACGG 58.951 40.000 4.43 0.00 36.53 4.02
3287 3611 5.408880 TTCCAATTGTGACTACATACGGA 57.591 39.130 4.43 0.00 36.53 4.69
3288 3612 5.006153 TCCAATTGTGACTACATACGGAG 57.994 43.478 4.43 0.00 36.53 4.63
3289 3613 3.555956 CCAATTGTGACTACATACGGAGC 59.444 47.826 4.43 0.00 36.53 4.70
3290 3614 4.180817 CAATTGTGACTACATACGGAGCA 58.819 43.478 0.00 0.00 36.53 4.26
3291 3615 3.945981 TTGTGACTACATACGGAGCAA 57.054 42.857 0.00 0.00 36.53 3.91
3292 3616 3.945981 TGTGACTACATACGGAGCAAA 57.054 42.857 0.00 0.00 0.00 3.68
3293 3617 4.260139 TGTGACTACATACGGAGCAAAA 57.740 40.909 0.00 0.00 0.00 2.44
3294 3618 4.827692 TGTGACTACATACGGAGCAAAAT 58.172 39.130 0.00 0.00 0.00 1.82
3295 3619 4.629634 TGTGACTACATACGGAGCAAAATG 59.370 41.667 0.00 0.00 0.00 2.32
3296 3620 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3297 3621 5.350365 GTGACTACATACGGAGCAAAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
3298 3622 6.037172 GTGACTACATACGGAGCAAAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
3299 3623 6.037062 TGACTACATACGGAGCAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
3300 3624 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
3301 3625 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
3302 3626 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
3303 3627 6.267817 ACATACGGAGCAAAATGAATGAATG 58.732 36.000 0.00 0.00 0.00 2.67
3304 3628 4.789012 ACGGAGCAAAATGAATGAATGT 57.211 36.364 0.00 0.00 0.00 2.71
3305 3629 5.895636 ACGGAGCAAAATGAATGAATGTA 57.104 34.783 0.00 0.00 0.00 2.29
3306 3630 5.640732 ACGGAGCAAAATGAATGAATGTAC 58.359 37.500 0.00 0.00 0.00 2.90
3307 3631 5.182950 ACGGAGCAAAATGAATGAATGTACA 59.817 36.000 0.00 0.00 0.00 2.90
3308 3632 5.512788 CGGAGCAAAATGAATGAATGTACAC 59.487 40.000 0.00 0.00 0.00 2.90
3309 3633 6.623549 CGGAGCAAAATGAATGAATGTACACT 60.624 38.462 0.00 0.00 0.00 3.55
3310 3634 6.749118 GGAGCAAAATGAATGAATGTACACTC 59.251 38.462 0.00 0.00 0.00 3.51
3311 3635 7.362401 GGAGCAAAATGAATGAATGTACACTCT 60.362 37.037 5.83 0.00 0.00 3.24
3312 3636 8.565896 AGCAAAATGAATGAATGTACACTCTA 57.434 30.769 5.83 0.00 0.00 2.43
3313 3637 9.013229 AGCAAAATGAATGAATGTACACTCTAA 57.987 29.630 5.83 0.00 0.00 2.10
3314 3638 9.624697 GCAAAATGAATGAATGTACACTCTAAA 57.375 29.630 5.83 0.00 0.00 1.85
3382 3706 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3383 3707 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
3384 3708 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
3399 3723 3.074242 CGGAGGAAGTAGATAGTAGGGGT 59.926 52.174 0.00 0.00 0.00 4.95
3422 3746 4.096833 TGCACACAGATGGAGAAATATTGC 59.903 41.667 0.00 0.00 0.00 3.56
3526 3853 2.115427 TGCTGAATACCCATTCCGAGA 58.885 47.619 0.00 0.00 39.97 4.04
3527 3854 2.503765 TGCTGAATACCCATTCCGAGAA 59.496 45.455 0.00 0.00 39.97 2.87
3528 3855 2.872858 GCTGAATACCCATTCCGAGAAC 59.127 50.000 0.00 0.00 39.97 3.01
3529 3856 3.681594 GCTGAATACCCATTCCGAGAACA 60.682 47.826 0.00 0.00 39.97 3.18
3530 3857 3.869065 TGAATACCCATTCCGAGAACAC 58.131 45.455 0.00 0.00 39.97 3.32
3531 3858 2.596904 ATACCCATTCCGAGAACACG 57.403 50.000 0.00 0.00 0.00 4.49
3552 3879 3.426159 CGGTTTCCTGATCACCATTTTCG 60.426 47.826 0.00 0.00 0.00 3.46
3576 3904 3.716431 TCCAGGGATCTAAACCTACGTT 58.284 45.455 0.00 0.00 34.71 3.99
3669 3997 5.221342 GGAACAGTGAGCAGCTATGTAGTAT 60.221 44.000 0.00 0.00 0.00 2.12
3703 4031 6.211184 TGAAATACTGCCTCCATTCACAAATT 59.789 34.615 0.00 0.00 0.00 1.82
3704 4032 7.395772 TGAAATACTGCCTCCATTCACAAATTA 59.604 33.333 0.00 0.00 0.00 1.40
3705 4033 7.902920 AATACTGCCTCCATTCACAAATTAT 57.097 32.000 0.00 0.00 0.00 1.28
3706 4034 7.902920 ATACTGCCTCCATTCACAAATTATT 57.097 32.000 0.00 0.00 0.00 1.40
3707 4035 6.610075 ACTGCCTCCATTCACAAATTATTT 57.390 33.333 0.00 0.00 0.00 1.40
3708 4036 7.008021 ACTGCCTCCATTCACAAATTATTTT 57.992 32.000 0.00 0.00 0.00 1.82
3754 4093 6.085573 ACACGTTTTACTGTGTTTGTTTACC 58.914 36.000 0.00 0.00 46.61 2.85
3765 4104 5.163499 TGTGTTTGTTTACCCATTTCAGTCC 60.163 40.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.881649 GATCATAGTTCACATGTCATGGTATAT 57.118 33.333 17.08 5.42 33.60 0.86
115 116 9.621629 TGTTTTCCTGTCTTTCTTTAATAGACA 57.378 29.630 0.00 0.00 44.27 3.41
118 119 9.346725 GCATGTTTTCCTGTCTTTCTTTAATAG 57.653 33.333 0.00 0.00 0.00 1.73
119 120 8.303876 GGCATGTTTTCCTGTCTTTCTTTAATA 58.696 33.333 0.00 0.00 0.00 0.98
120 121 7.154656 GGCATGTTTTCCTGTCTTTCTTTAAT 58.845 34.615 0.00 0.00 0.00 1.40
132 133 1.501741 CGGACGGCATGTTTTCCTG 59.498 57.895 0.00 0.00 0.00 3.86
135 136 1.029947 ATCCCGGACGGCATGTTTTC 61.030 55.000 0.73 0.00 0.00 2.29
141 142 1.696097 AAAGCTATCCCGGACGGCAT 61.696 55.000 0.73 0.00 0.00 4.40
170 177 6.818644 CAGAGTGGCTTTTCTTTACAGCTATA 59.181 38.462 0.00 0.00 33.76 1.31
171 178 5.645497 CAGAGTGGCTTTTCTTTACAGCTAT 59.355 40.000 0.00 0.00 33.76 2.97
172 179 4.997395 CAGAGTGGCTTTTCTTTACAGCTA 59.003 41.667 0.00 0.00 33.76 3.32
173 180 3.817647 CAGAGTGGCTTTTCTTTACAGCT 59.182 43.478 0.00 0.00 33.76 4.24
204 218 4.385358 TCAGTGGCTTTCCTTTGTTTTC 57.615 40.909 0.00 0.00 0.00 2.29
267 281 0.721718 GAGTGCGGACGGAAGAAATG 59.278 55.000 0.00 0.00 0.00 2.32
268 282 0.608640 AGAGTGCGGACGGAAGAAAT 59.391 50.000 0.00 0.00 0.00 2.17
269 283 0.319555 CAGAGTGCGGACGGAAGAAA 60.320 55.000 0.00 0.00 0.00 2.52
270 284 1.289066 CAGAGTGCGGACGGAAGAA 59.711 57.895 0.00 0.00 0.00 2.52
271 285 1.461091 AACAGAGTGCGGACGGAAGA 61.461 55.000 0.00 0.00 0.00 2.87
272 286 1.006102 AACAGAGTGCGGACGGAAG 60.006 57.895 0.00 0.00 0.00 3.46
274 288 2.649034 GAACAGAGTGCGGACGGA 59.351 61.111 0.00 0.00 0.00 4.69
275 289 2.805353 CGAACAGAGTGCGGACGG 60.805 66.667 0.00 0.00 29.76 4.79
280 294 2.607187 AGTAATTCCGAACAGAGTGCG 58.393 47.619 0.00 0.00 33.82 5.34
281 295 3.746492 ACAAGTAATTCCGAACAGAGTGC 59.254 43.478 0.00 0.00 0.00 4.40
282 296 4.090066 CGACAAGTAATTCCGAACAGAGTG 59.910 45.833 0.00 0.00 0.00 3.51
284 298 3.060895 GCGACAAGTAATTCCGAACAGAG 59.939 47.826 0.00 0.00 0.00 3.35
285 299 2.991190 GCGACAAGTAATTCCGAACAGA 59.009 45.455 0.00 0.00 0.00 3.41
286 300 2.734606 TGCGACAAGTAATTCCGAACAG 59.265 45.455 0.00 0.00 0.00 3.16
287 301 2.756829 TGCGACAAGTAATTCCGAACA 58.243 42.857 0.00 0.00 0.00 3.18
289 303 4.815040 TTTTGCGACAAGTAATTCCGAA 57.185 36.364 0.00 0.00 0.00 4.30
290 304 4.815040 TTTTTGCGACAAGTAATTCCGA 57.185 36.364 0.00 0.00 0.00 4.55
291 305 4.323336 CCATTTTTGCGACAAGTAATTCCG 59.677 41.667 0.00 0.00 0.00 4.30
293 307 6.586082 ACATCCATTTTTGCGACAAGTAATTC 59.414 34.615 0.00 0.00 0.00 2.17
294 308 6.454795 ACATCCATTTTTGCGACAAGTAATT 58.545 32.000 0.00 0.00 0.00 1.40
295 309 6.024552 ACATCCATTTTTGCGACAAGTAAT 57.975 33.333 0.00 0.00 0.00 1.89
296 310 5.446143 ACATCCATTTTTGCGACAAGTAA 57.554 34.783 0.00 0.00 0.00 2.24
298 312 5.415701 AGATACATCCATTTTTGCGACAAGT 59.584 36.000 0.00 0.00 0.00 3.16
299 313 5.883661 AGATACATCCATTTTTGCGACAAG 58.116 37.500 0.00 0.00 0.00 3.16
301 315 6.345298 TCTAGATACATCCATTTTTGCGACA 58.655 36.000 0.00 0.00 0.00 4.35
302 316 6.844696 TCTAGATACATCCATTTTTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
303 317 6.992123 ACATCTAGATACATCCATTTTTGCGA 59.008 34.615 4.54 0.00 0.00 5.10
304 318 7.194607 ACATCTAGATACATCCATTTTTGCG 57.805 36.000 4.54 0.00 0.00 4.85
345 359 9.616634 CGGAATTATTTGTCTTGAATATGGATG 57.383 33.333 0.00 0.00 0.00 3.51
346 360 9.573166 TCGGAATTATTTGTCTTGAATATGGAT 57.427 29.630 0.00 0.00 0.00 3.41
347 361 8.972458 TCGGAATTATTTGTCTTGAATATGGA 57.028 30.769 0.00 0.00 0.00 3.41
351 365 9.402320 TCCATTCGGAATTATTTGTCTTGAATA 57.598 29.630 0.00 0.00 38.83 1.75
352 366 8.292444 TCCATTCGGAATTATTTGTCTTGAAT 57.708 30.769 0.00 0.00 38.83 2.57
353 367 7.148086 CCTCCATTCGGAATTATTTGTCTTGAA 60.148 37.037 0.00 0.00 42.21 2.69
354 368 6.318648 CCTCCATTCGGAATTATTTGTCTTGA 59.681 38.462 0.00 0.00 42.21 3.02
355 369 6.460123 CCCTCCATTCGGAATTATTTGTCTTG 60.460 42.308 0.00 0.00 42.21 3.02
356 370 5.594317 CCCTCCATTCGGAATTATTTGTCTT 59.406 40.000 0.00 0.00 42.21 3.01
357 371 5.104109 TCCCTCCATTCGGAATTATTTGTCT 60.104 40.000 0.00 0.00 42.21 3.41
358 372 5.130350 TCCCTCCATTCGGAATTATTTGTC 58.870 41.667 0.00 0.00 42.21 3.18
359 373 5.124036 TCCCTCCATTCGGAATTATTTGT 57.876 39.130 0.00 0.00 42.21 2.83
360 374 5.133221 ACTCCCTCCATTCGGAATTATTTG 58.867 41.667 0.00 0.00 42.21 2.32
361 375 5.388599 ACTCCCTCCATTCGGAATTATTT 57.611 39.130 0.00 0.00 42.21 1.40
362 376 5.607171 ACTACTCCCTCCATTCGGAATTATT 59.393 40.000 0.00 0.00 42.21 1.40
363 377 5.155905 ACTACTCCCTCCATTCGGAATTAT 58.844 41.667 0.00 0.00 42.21 1.28
364 378 4.553678 ACTACTCCCTCCATTCGGAATTA 58.446 43.478 0.00 0.00 42.21 1.40
365 379 3.385115 ACTACTCCCTCCATTCGGAATT 58.615 45.455 0.00 0.00 42.21 2.17
366 380 3.047695 ACTACTCCCTCCATTCGGAAT 57.952 47.619 0.00 0.00 42.21 3.01
367 381 2.544844 ACTACTCCCTCCATTCGGAA 57.455 50.000 0.00 0.00 42.21 4.30
368 382 2.544844 AACTACTCCCTCCATTCGGA 57.455 50.000 0.00 0.00 39.79 4.55
369 383 3.705072 AGTTAACTACTCCCTCCATTCGG 59.295 47.826 6.26 0.00 28.23 4.30
370 384 5.593502 ACTAGTTAACTACTCCCTCCATTCG 59.406 44.000 11.38 0.36 38.33 3.34
371 385 7.779326 AGTACTAGTTAACTACTCCCTCCATTC 59.221 40.741 11.38 0.00 38.33 2.67
372 386 7.650660 AGTACTAGTTAACTACTCCCTCCATT 58.349 38.462 11.38 0.00 38.33 3.16
373 387 7.129193 AGAGTACTAGTTAACTACTCCCTCCAT 59.871 40.741 24.04 9.55 38.33 3.41
374 388 6.446434 AGAGTACTAGTTAACTACTCCCTCCA 59.554 42.308 24.04 2.06 38.33 3.86
375 389 6.899089 AGAGTACTAGTTAACTACTCCCTCC 58.101 44.000 24.04 8.27 38.33 4.30
376 390 7.795047 AGAGAGTACTAGTTAACTACTCCCTC 58.205 42.308 24.04 18.48 38.33 4.30
377 391 7.754091 AGAGAGTACTAGTTAACTACTCCCT 57.246 40.000 24.04 18.65 38.33 4.20
378 392 8.046107 TGAAGAGAGTACTAGTTAACTACTCCC 58.954 40.741 24.04 17.16 38.33 4.30
379 393 9.617523 ATGAAGAGAGTACTAGTTAACTACTCC 57.382 37.037 24.04 18.02 38.33 3.85
482 496 5.441709 TCCGTTCGGAAAAGCTTATTTTT 57.558 34.783 11.66 0.00 33.19 1.94
483 497 4.082949 CCTCCGTTCGGAAAAGCTTATTTT 60.083 41.667 14.79 0.00 33.41 1.82
484 498 3.439129 CCTCCGTTCGGAAAAGCTTATTT 59.561 43.478 14.79 0.00 33.41 1.40
485 499 3.007635 CCTCCGTTCGGAAAAGCTTATT 58.992 45.455 14.79 0.00 33.41 1.40
486 500 2.235402 TCCTCCGTTCGGAAAAGCTTAT 59.765 45.455 14.79 0.00 33.41 1.73
487 501 1.619827 TCCTCCGTTCGGAAAAGCTTA 59.380 47.619 14.79 0.00 33.41 3.09
488 502 0.395312 TCCTCCGTTCGGAAAAGCTT 59.605 50.000 14.79 0.00 33.41 3.74
489 503 0.395312 TTCCTCCGTTCGGAAAAGCT 59.605 50.000 14.79 0.00 37.59 3.74
490 504 0.796927 CTTCCTCCGTTCGGAAAAGC 59.203 55.000 14.79 0.00 39.86 3.51
491 505 2.165319 ACTTCCTCCGTTCGGAAAAG 57.835 50.000 22.73 22.73 39.86 2.27
492 506 3.258872 TGATACTTCCTCCGTTCGGAAAA 59.741 43.478 14.79 10.86 39.86 2.29
493 507 2.827322 TGATACTTCCTCCGTTCGGAAA 59.173 45.455 14.79 6.77 39.86 3.13
494 508 2.165030 GTGATACTTCCTCCGTTCGGAA 59.835 50.000 14.79 0.00 38.18 4.30
495 509 1.747355 GTGATACTTCCTCCGTTCGGA 59.253 52.381 13.34 13.34 0.00 4.55
496 510 1.475280 TGTGATACTTCCTCCGTTCGG 59.525 52.381 4.74 4.74 0.00 4.30
497 511 2.933495 TGTGATACTTCCTCCGTTCG 57.067 50.000 0.00 0.00 0.00 3.95
498 512 4.312443 TGTTTGTGATACTTCCTCCGTTC 58.688 43.478 0.00 0.00 0.00 3.95
499 513 4.345859 TGTTTGTGATACTTCCTCCGTT 57.654 40.909 0.00 0.00 0.00 4.44
500 514 4.345859 TTGTTTGTGATACTTCCTCCGT 57.654 40.909 0.00 0.00 0.00 4.69
501 515 5.163754 GGATTTGTTTGTGATACTTCCTCCG 60.164 44.000 0.00 0.00 0.00 4.63
502 516 5.946377 AGGATTTGTTTGTGATACTTCCTCC 59.054 40.000 0.00 0.00 0.00 4.30
503 517 6.127897 CCAGGATTTGTTTGTGATACTTCCTC 60.128 42.308 0.00 0.00 0.00 3.71
504 518 5.711976 CCAGGATTTGTTTGTGATACTTCCT 59.288 40.000 0.00 0.00 0.00 3.36
505 519 5.476945 ACCAGGATTTGTTTGTGATACTTCC 59.523 40.000 0.00 0.00 0.00 3.46
506 520 6.575162 ACCAGGATTTGTTTGTGATACTTC 57.425 37.500 0.00 0.00 0.00 3.01
507 521 6.549364 TCAACCAGGATTTGTTTGTGATACTT 59.451 34.615 0.00 0.00 31.68 2.24
508 522 6.068010 TCAACCAGGATTTGTTTGTGATACT 58.932 36.000 0.00 0.00 31.68 2.12
509 523 6.325919 TCAACCAGGATTTGTTTGTGATAC 57.674 37.500 0.00 0.00 31.68 2.24
510 524 7.537596 AATCAACCAGGATTTGTTTGTGATA 57.462 32.000 0.00 0.00 33.85 2.15
511 525 6.423776 AATCAACCAGGATTTGTTTGTGAT 57.576 33.333 0.00 0.00 33.85 3.06
512 526 5.867903 AATCAACCAGGATTTGTTTGTGA 57.132 34.783 0.00 0.00 33.85 3.58
513 527 7.406799 GTTAATCAACCAGGATTTGTTTGTG 57.593 36.000 0.00 0.00 38.41 3.33
528 542 4.142038 ACACCTGGACTTGGTTAATCAAC 58.858 43.478 0.00 0.00 35.28 3.18
529 543 4.394729 GACACCTGGACTTGGTTAATCAA 58.605 43.478 0.00 0.33 35.28 2.57
575 595 2.035961 GTCGTGCTGCTGGATTATAGGA 59.964 50.000 0.00 0.00 0.00 2.94
618 642 0.878523 CCACGTCGTGCTTTGGAAGA 60.879 55.000 20.01 0.00 31.34 2.87
620 644 2.539338 GCCACGTCGTGCTTTGGAA 61.539 57.895 20.01 0.00 31.34 3.53
674 698 3.008375 CCCCTGTCAATCTTCTTGTCTGA 59.992 47.826 0.00 0.00 0.00 3.27
675 699 3.341823 CCCCTGTCAATCTTCTTGTCTG 58.658 50.000 0.00 0.00 0.00 3.51
676 700 2.290577 GCCCCTGTCAATCTTCTTGTCT 60.291 50.000 0.00 0.00 0.00 3.41
684 714 0.842030 TCACCTGCCCCTGTCAATCT 60.842 55.000 0.00 0.00 0.00 2.40
685 715 0.257039 ATCACCTGCCCCTGTCAATC 59.743 55.000 0.00 0.00 0.00 2.67
747 780 1.689273 AGTCTCCGATCCCAATACAGC 59.311 52.381 0.00 0.00 0.00 4.40
751 784 1.954382 CGACAGTCTCCGATCCCAATA 59.046 52.381 0.00 0.00 0.00 1.90
754 787 1.753078 CCGACAGTCTCCGATCCCA 60.753 63.158 0.00 0.00 0.00 4.37
853 905 1.760480 GTGGAGGAGAGGAGGAGGC 60.760 68.421 0.00 0.00 0.00 4.70
856 908 2.043852 GCGTGGAGGAGAGGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
874 926 0.243636 AGGGCTTTTTATGCACGCAC 59.756 50.000 0.00 0.00 39.12 5.34
875 927 0.525761 GAGGGCTTTTTATGCACGCA 59.474 50.000 0.00 0.00 39.12 5.24
934 986 2.615227 ATTCGGGGAGCTGGATGTGC 62.615 60.000 0.00 0.00 0.00 4.57
975 1052 2.732658 GGTCCGGTTCGTGTGTCT 59.267 61.111 0.00 0.00 0.00 3.41
976 1053 2.732094 CGGTCCGGTTCGTGTGTC 60.732 66.667 2.34 0.00 0.00 3.67
977 1054 4.289245 CCGGTCCGGTTCGTGTGT 62.289 66.667 23.02 0.00 42.73 3.72
992 1069 4.204891 GCGTCGCCATTTCGTCCG 62.205 66.667 5.75 0.00 0.00 4.79
993 1070 2.799540 GAGCGTCGCCATTTCGTCC 61.800 63.158 14.86 0.00 0.00 4.79
994 1071 1.743855 GAGAGCGTCGCCATTTCGTC 61.744 60.000 14.86 2.69 0.00 4.20
1089 1166 2.775856 GGAGACGATGAGGCGCTCA 61.776 63.158 7.64 9.80 44.99 4.26
1242 1322 0.108424 CAGGCGAGAAAGAGACCCAG 60.108 60.000 0.00 0.00 0.00 4.45
1243 1323 0.541998 TCAGGCGAGAAAGAGACCCA 60.542 55.000 0.00 0.00 0.00 4.51
1244 1324 0.827368 ATCAGGCGAGAAAGAGACCC 59.173 55.000 0.00 0.00 0.00 4.46
1245 1325 1.202475 GGATCAGGCGAGAAAGAGACC 60.202 57.143 0.00 0.00 0.00 3.85
1246 1326 1.535015 CGGATCAGGCGAGAAAGAGAC 60.535 57.143 0.00 0.00 0.00 3.36
1272 1379 1.442184 CAGGAGAACACGACCGTCG 60.442 63.158 19.24 19.24 46.93 5.12
1274 1381 2.338984 GCAGGAGAACACGACCGT 59.661 61.111 0.00 0.00 0.00 4.83
1278 1390 1.536073 CCCTCTGCAGGAGAACACGA 61.536 60.000 15.13 0.00 43.65 4.35
1348 1460 0.035458 CACTTCTTGGCCTCCTCGTT 59.965 55.000 3.32 0.00 0.00 3.85
1349 1461 1.674057 CACTTCTTGGCCTCCTCGT 59.326 57.895 3.32 0.00 0.00 4.18
1516 1628 3.208884 GAGGTGCGTGTGACCGACT 62.209 63.158 0.00 0.00 38.64 4.18
1520 1632 2.048127 GGAGAGGTGCGTGTGACC 60.048 66.667 0.00 0.00 0.00 4.02
1521 1633 1.080434 GAGGAGAGGTGCGTGTGAC 60.080 63.158 0.00 0.00 0.00 3.67
1522 1634 1.228583 AGAGGAGAGGTGCGTGTGA 60.229 57.895 0.00 0.00 0.00 3.58
1523 1635 1.214062 GAGAGGAGAGGTGCGTGTG 59.786 63.158 0.00 0.00 0.00 3.82
1524 1636 0.540830 AAGAGAGGAGAGGTGCGTGT 60.541 55.000 0.00 0.00 0.00 4.49
1525 1637 0.172352 GAAGAGAGGAGAGGTGCGTG 59.828 60.000 0.00 0.00 0.00 5.34
1526 1638 1.309499 CGAAGAGAGGAGAGGTGCGT 61.309 60.000 0.00 0.00 0.00 5.24
1527 1639 1.027255 TCGAAGAGAGGAGAGGTGCG 61.027 60.000 0.00 0.00 0.00 5.34
1528 1640 1.336755 GATCGAAGAGAGGAGAGGTGC 59.663 57.143 0.00 0.00 43.63 5.01
1529 1641 1.953686 GGATCGAAGAGAGGAGAGGTG 59.046 57.143 0.00 0.00 43.63 4.00
1530 1642 1.566703 TGGATCGAAGAGAGGAGAGGT 59.433 52.381 0.00 0.00 43.63 3.85
1563 1675 1.518929 GATCGAGATCCGCGTTTTCTG 59.481 52.381 4.92 0.22 38.37 3.02
1579 1691 1.455786 GATACGCATTTGGACGGATCG 59.544 52.381 0.00 0.00 39.62 3.69
1593 1705 2.246719 AGATTTGGGCAGAGATACGC 57.753 50.000 0.00 0.00 0.00 4.42
1594 1706 4.322080 TGTAGATTTGGGCAGAGATACG 57.678 45.455 0.00 0.00 0.00 3.06
1595 1707 7.500559 AGATTTTGTAGATTTGGGCAGAGATAC 59.499 37.037 0.00 0.00 0.00 2.24
1596 1708 7.577303 AGATTTTGTAGATTTGGGCAGAGATA 58.423 34.615 0.00 0.00 0.00 1.98
1597 1709 6.430007 AGATTTTGTAGATTTGGGCAGAGAT 58.570 36.000 0.00 0.00 0.00 2.75
1598 1710 5.819991 AGATTTTGTAGATTTGGGCAGAGA 58.180 37.500 0.00 0.00 0.00 3.10
1599 1711 5.649395 TGAGATTTTGTAGATTTGGGCAGAG 59.351 40.000 0.00 0.00 0.00 3.35
1600 1712 5.415701 GTGAGATTTTGTAGATTTGGGCAGA 59.584 40.000 0.00 0.00 0.00 4.26
1601 1713 5.183713 TGTGAGATTTTGTAGATTTGGGCAG 59.816 40.000 0.00 0.00 0.00 4.85
1602 1714 5.076182 TGTGAGATTTTGTAGATTTGGGCA 58.924 37.500 0.00 0.00 0.00 5.36
1603 1715 5.415701 TCTGTGAGATTTTGTAGATTTGGGC 59.584 40.000 0.00 0.00 0.00 5.36
1604 1716 6.430925 TGTCTGTGAGATTTTGTAGATTTGGG 59.569 38.462 0.00 0.00 0.00 4.12
1605 1717 7.439157 TGTCTGTGAGATTTTGTAGATTTGG 57.561 36.000 0.00 0.00 0.00 3.28
1606 1718 8.724229 TGATGTCTGTGAGATTTTGTAGATTTG 58.276 33.333 0.00 0.00 0.00 2.32
1607 1719 8.853077 TGATGTCTGTGAGATTTTGTAGATTT 57.147 30.769 0.00 0.00 0.00 2.17
1608 1720 8.890718 CATGATGTCTGTGAGATTTTGTAGATT 58.109 33.333 0.00 0.00 0.00 2.40
1609 1721 8.262933 TCATGATGTCTGTGAGATTTTGTAGAT 58.737 33.333 0.00 0.00 0.00 1.98
1610 1722 7.547019 GTCATGATGTCTGTGAGATTTTGTAGA 59.453 37.037 0.00 0.00 0.00 2.59
1611 1723 7.332678 TGTCATGATGTCTGTGAGATTTTGTAG 59.667 37.037 0.00 0.00 0.00 2.74
1623 1735 2.932622 GCCGTTCTGTCATGATGTCTGT 60.933 50.000 0.00 0.00 0.00 3.41
1655 1767 1.734655 GGGAGCTGGGAAGGATATCA 58.265 55.000 4.83 0.00 0.00 2.15
1675 1787 5.981315 TCGAAGATTCACATATTAACGGACC 59.019 40.000 0.00 0.00 0.00 4.46
1677 1789 7.430441 TGATCGAAGATTCACATATTAACGGA 58.570 34.615 0.00 0.00 45.12 4.69
1701 1813 5.635549 TCAAGTTACGTCGCATGATAATG 57.364 39.130 0.00 0.00 0.00 1.90
1712 1963 8.299262 AGCATATAACATGATCAAGTTACGTC 57.701 34.615 22.06 13.09 33.49 4.34
1759 2010 5.894393 TGTGGGATGTAACAGGAAAGAAAAA 59.106 36.000 0.00 0.00 0.00 1.94
1764 2015 4.021102 AGTGTGGGATGTAACAGGAAAG 57.979 45.455 0.00 0.00 0.00 2.62
1768 2019 3.255642 CCAAAAGTGTGGGATGTAACAGG 59.744 47.826 0.00 0.00 34.77 4.00
1770 2021 3.634448 CACCAAAAGTGTGGGATGTAACA 59.366 43.478 0.00 0.00 43.56 2.41
1771 2022 4.237349 CACCAAAAGTGTGGGATGTAAC 57.763 45.455 0.00 0.00 43.56 2.50
1783 2040 5.182001 GCTGTCTAATCATGACACCAAAAGT 59.818 40.000 0.00 0.00 39.23 2.66
1793 2050 4.962362 TCCCTAAGTGCTGTCTAATCATGA 59.038 41.667 0.00 0.00 0.00 3.07
1806 2064 3.995048 GAGTGTAAAGTGTCCCTAAGTGC 59.005 47.826 0.00 0.00 0.00 4.40
1811 2069 7.453752 AGAATAACAGAGTGTAAAGTGTCCCTA 59.546 37.037 0.00 0.00 0.00 3.53
1812 2070 6.270231 AGAATAACAGAGTGTAAAGTGTCCCT 59.730 38.462 0.00 0.00 0.00 4.20
1813 2071 6.465084 AGAATAACAGAGTGTAAAGTGTCCC 58.535 40.000 0.00 0.00 0.00 4.46
1816 2074 8.204836 ACTGAAGAATAACAGAGTGTAAAGTGT 58.795 33.333 0.00 0.00 37.54 3.55
1823 2081 7.445945 AGCTTAACTGAAGAATAACAGAGTGT 58.554 34.615 0.00 0.00 37.33 3.55
1849 2109 8.153550 GGAAAACAGGAGATAGTACATCATGAT 58.846 37.037 1.18 1.18 0.00 2.45
1855 2115 4.960469 TCGGGAAAACAGGAGATAGTACAT 59.040 41.667 0.00 0.00 0.00 2.29
1858 2118 3.379372 CGTCGGGAAAACAGGAGATAGTA 59.621 47.826 0.00 0.00 0.00 1.82
1859 2119 2.165845 CGTCGGGAAAACAGGAGATAGT 59.834 50.000 0.00 0.00 0.00 2.12
1860 2120 2.165845 ACGTCGGGAAAACAGGAGATAG 59.834 50.000 0.00 0.00 0.00 2.08
1874 2134 2.882761 TCTGGATAAGTATCACGTCGGG 59.117 50.000 0.00 0.00 34.40 5.14
1911 2171 5.885449 AAGGAGGAGTATCTCAGAATTGG 57.115 43.478 0.00 0.00 35.58 3.16
1921 2181 4.967036 AGCAGCAATTAAGGAGGAGTATC 58.033 43.478 0.00 0.00 0.00 2.24
2072 2333 4.873817 TCGTTGATCTTTCCGTTGAGTAA 58.126 39.130 0.00 0.00 0.00 2.24
2080 2341 1.661112 GCCTTCTCGTTGATCTTTCCG 59.339 52.381 0.00 0.00 0.00 4.30
2107 2368 1.025041 TCCTGACGACCTCATCATCG 58.975 55.000 0.00 0.00 43.97 3.84
2117 2378 1.272490 TGTGGTGAGAATCCTGACGAC 59.728 52.381 0.00 0.00 36.21 4.34
2256 2517 7.265647 TGTGTATTTGTCTTCGAATGGAAAA 57.734 32.000 0.00 0.00 33.34 2.29
2257 2518 6.869315 TGTGTATTTGTCTTCGAATGGAAA 57.131 33.333 0.00 0.00 33.34 3.13
2260 2521 6.668541 AGATGTGTATTTGTCTTCGAATGG 57.331 37.500 0.00 0.00 0.00 3.16
2263 2524 9.350357 GTAGTAAGATGTGTATTTGTCTTCGAA 57.650 33.333 0.00 0.00 33.36 3.71
2264 2525 8.737175 AGTAGTAAGATGTGTATTTGTCTTCGA 58.263 33.333 0.00 0.00 33.36 3.71
2287 2551 6.916387 GCGCAACATAGATAAGTGTTCTAGTA 59.084 38.462 0.30 0.00 36.48 1.82
2290 2554 4.738252 CGCGCAACATAGATAAGTGTTCTA 59.262 41.667 8.75 0.00 36.48 2.10
2298 2562 3.930229 ACTCAAACGCGCAACATAGATAA 59.070 39.130 5.73 0.00 0.00 1.75
2337 2601 6.770785 TGCCTACCCAATTTCATCATTAGTAC 59.229 38.462 0.00 0.00 0.00 2.73
2340 2604 5.829924 AGTGCCTACCCAATTTCATCATTAG 59.170 40.000 0.00 0.00 0.00 1.73
2351 2644 3.332485 TCTTTTACCAGTGCCTACCCAAT 59.668 43.478 0.00 0.00 0.00 3.16
2356 2649 5.938125 TCAGATTTCTTTTACCAGTGCCTAC 59.062 40.000 0.00 0.00 0.00 3.18
2376 2669 5.664457 ACGCAATAGATCAGTTGAATCAGA 58.336 37.500 12.61 0.00 0.00 3.27
2380 2673 6.932356 ATGAACGCAATAGATCAGTTGAAT 57.068 33.333 12.61 0.00 0.00 2.57
2385 2678 7.010552 GTGTCTTAATGAACGCAATAGATCAGT 59.989 37.037 0.00 0.00 0.00 3.41
2386 2679 7.223582 AGTGTCTTAATGAACGCAATAGATCAG 59.776 37.037 0.00 0.00 0.00 2.90
2392 2685 9.811995 AGTATAAGTGTCTTAATGAACGCAATA 57.188 29.630 0.00 0.00 0.00 1.90
2397 2690 7.488150 TGAGCAGTATAAGTGTCTTAATGAACG 59.512 37.037 0.00 0.00 0.00 3.95
2414 2721 8.050778 TGGTTTTCGATAATTTTGAGCAGTAT 57.949 30.769 0.00 0.00 0.00 2.12
2433 2740 9.537192 TCTATCGACGTATAATCATTTGGTTTT 57.463 29.630 0.00 0.00 0.00 2.43
2436 2743 8.573885 TCTTCTATCGACGTATAATCATTTGGT 58.426 33.333 0.00 0.00 0.00 3.67
2437 2744 8.965986 TCTTCTATCGACGTATAATCATTTGG 57.034 34.615 0.00 0.00 0.00 3.28
2458 2765 9.095065 TGAAACAAGTGTAAAGAACTACTCTTC 57.905 33.333 0.00 0.00 44.00 2.87
2472 2779 5.680619 ACAATGTCTCCTGAAACAAGTGTA 58.319 37.500 0.00 0.00 30.42 2.90
2568 2890 1.153349 GATCGCCCTGAGGGTTGAC 60.153 63.158 20.64 8.65 46.51 3.18
2577 2899 2.332063 AACACCTTATGATCGCCCTG 57.668 50.000 0.00 0.00 0.00 4.45
2604 2926 5.087323 ACCTTCTCAAAGTATCTGTCAGGA 58.913 41.667 0.00 0.00 0.00 3.86
2833 3155 3.586174 AGCATATGGTAGATCAGGCACAT 59.414 43.478 5.40 0.00 0.00 3.21
2951 3274 8.019669 GCAGCTCAAATGACGAAATGATATAAT 58.980 33.333 0.00 0.00 0.00 1.28
3025 3348 6.073331 ACGAAAAATAACACCAATGCAAATGG 60.073 34.615 17.76 17.76 43.84 3.16
3045 3368 1.816835 AGACGTGAGCATCCTACGAAA 59.183 47.619 0.00 0.00 40.01 3.46
3048 3371 3.497262 TGTATAGACGTGAGCATCCTACG 59.503 47.826 0.00 0.00 42.98 3.51
3056 3379 8.749841 AATGATTATTCTGTATAGACGTGAGC 57.250 34.615 0.00 0.00 31.21 4.26
3133 3456 0.698238 CCAAGGTCATTCCACTCCCA 59.302 55.000 0.00 0.00 39.02 4.37
3187 3510 3.674358 AGGGGTTCAGGGGTATGATAT 57.326 47.619 0.00 0.00 0.00 1.63
3230 3554 6.562993 AGACTTATATTTAGGAAAGGAGGGGG 59.437 42.308 0.00 0.00 0.00 5.40
3231 3555 7.634526 AGACTTATATTTAGGAAAGGAGGGG 57.365 40.000 0.00 0.00 0.00 4.79
3232 3556 9.562408 GAAAGACTTATATTTAGGAAAGGAGGG 57.438 37.037 0.00 0.00 0.00 4.30
3249 3573 9.658799 CACAATTGGAATCTCTAGAAAGACTTA 57.341 33.333 10.83 0.00 0.00 2.24
3250 3574 8.378565 TCACAATTGGAATCTCTAGAAAGACTT 58.621 33.333 10.83 0.00 0.00 3.01
3251 3575 7.821846 GTCACAATTGGAATCTCTAGAAAGACT 59.178 37.037 10.83 0.00 0.00 3.24
3252 3576 7.821846 AGTCACAATTGGAATCTCTAGAAAGAC 59.178 37.037 10.83 0.00 0.00 3.01
3253 3577 7.911651 AGTCACAATTGGAATCTCTAGAAAGA 58.088 34.615 10.83 0.00 0.00 2.52
3254 3578 9.092876 GTAGTCACAATTGGAATCTCTAGAAAG 57.907 37.037 10.83 0.00 0.00 2.62
3255 3579 8.593679 TGTAGTCACAATTGGAATCTCTAGAAA 58.406 33.333 10.83 0.00 0.00 2.52
3256 3580 8.134202 TGTAGTCACAATTGGAATCTCTAGAA 57.866 34.615 10.83 0.00 0.00 2.10
3257 3581 7.718334 TGTAGTCACAATTGGAATCTCTAGA 57.282 36.000 10.83 0.00 0.00 2.43
3258 3582 9.469807 GTATGTAGTCACAATTGGAATCTCTAG 57.530 37.037 10.83 0.00 38.42 2.43
3259 3583 8.135529 CGTATGTAGTCACAATTGGAATCTCTA 58.864 37.037 10.83 1.47 38.42 2.43
3260 3584 6.980978 CGTATGTAGTCACAATTGGAATCTCT 59.019 38.462 10.83 2.35 38.42 3.10
3261 3585 6.201044 CCGTATGTAGTCACAATTGGAATCTC 59.799 42.308 10.83 2.54 38.42 2.75
3262 3586 6.049149 CCGTATGTAGTCACAATTGGAATCT 58.951 40.000 10.83 5.33 38.42 2.40
3263 3587 6.046593 TCCGTATGTAGTCACAATTGGAATC 58.953 40.000 10.83 0.00 38.42 2.52
3264 3588 5.984725 TCCGTATGTAGTCACAATTGGAAT 58.015 37.500 10.83 6.29 38.42 3.01
3265 3589 5.408880 TCCGTATGTAGTCACAATTGGAA 57.591 39.130 10.83 0.00 38.42 3.53
3266 3590 4.679639 GCTCCGTATGTAGTCACAATTGGA 60.680 45.833 10.83 1.40 38.42 3.53
3267 3591 3.555956 GCTCCGTATGTAGTCACAATTGG 59.444 47.826 10.83 0.00 38.42 3.16
3268 3592 4.180817 TGCTCCGTATGTAGTCACAATTG 58.819 43.478 3.24 3.24 38.42 2.32
3269 3593 4.465632 TGCTCCGTATGTAGTCACAATT 57.534 40.909 0.00 0.00 38.42 2.32
3270 3594 4.465632 TTGCTCCGTATGTAGTCACAAT 57.534 40.909 0.00 0.00 38.42 2.71
3271 3595 3.945981 TTGCTCCGTATGTAGTCACAA 57.054 42.857 0.00 0.00 38.42 3.33
3272 3596 3.945981 TTTGCTCCGTATGTAGTCACA 57.054 42.857 0.00 0.00 39.52 3.58
3273 3597 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3274 3598 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3275 3599 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
3276 3600 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
3277 3601 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
3278 3602 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
3279 3603 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
3280 3604 6.267817 ACATTCATTCATTTTGCTCCGTATG 58.732 36.000 0.00 0.00 0.00 2.39
3281 3605 6.455360 ACATTCATTCATTTTGCTCCGTAT 57.545 33.333 0.00 0.00 0.00 3.06
3282 3606 5.895636 ACATTCATTCATTTTGCTCCGTA 57.104 34.783 0.00 0.00 0.00 4.02
3283 3607 4.789012 ACATTCATTCATTTTGCTCCGT 57.211 36.364 0.00 0.00 0.00 4.69
3284 3608 5.512788 GTGTACATTCATTCATTTTGCTCCG 59.487 40.000 0.00 0.00 0.00 4.63
3285 3609 6.624423 AGTGTACATTCATTCATTTTGCTCC 58.376 36.000 0.00 0.00 0.00 4.70
3286 3610 7.533426 AGAGTGTACATTCATTCATTTTGCTC 58.467 34.615 19.24 6.68 0.00 4.26
3287 3611 7.458409 AGAGTGTACATTCATTCATTTTGCT 57.542 32.000 19.24 0.00 0.00 3.91
3288 3612 9.624697 TTTAGAGTGTACATTCATTCATTTTGC 57.375 29.630 19.24 0.00 0.00 3.68
3356 3680 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3357 3681 8.765517 TCCTCCGTTCCTAAATATAAGTCTTTT 58.234 33.333 0.00 0.00 0.00 2.27
3358 3682 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
3359 3683 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
3360 3684 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
3361 3685 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
3362 3686 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3363 3687 9.075678 TCTACTTCCTCCGTTCCTAAATATAAG 57.924 37.037 0.00 0.00 0.00 1.73
3364 3688 9.597681 ATCTACTTCCTCCGTTCCTAAATATAA 57.402 33.333 0.00 0.00 0.00 0.98
3366 3690 9.245481 CTATCTACTTCCTCCGTTCCTAAATAT 57.755 37.037 0.00 0.00 0.00 1.28
3367 3691 8.223330 ACTATCTACTTCCTCCGTTCCTAAATA 58.777 37.037 0.00 0.00 0.00 1.40
3368 3692 7.068061 ACTATCTACTTCCTCCGTTCCTAAAT 58.932 38.462 0.00 0.00 0.00 1.40
3369 3693 6.430007 ACTATCTACTTCCTCCGTTCCTAAA 58.570 40.000 0.00 0.00 0.00 1.85
3370 3694 6.011122 ACTATCTACTTCCTCCGTTCCTAA 57.989 41.667 0.00 0.00 0.00 2.69
3371 3695 5.643421 ACTATCTACTTCCTCCGTTCCTA 57.357 43.478 0.00 0.00 0.00 2.94
3372 3696 4.523168 ACTATCTACTTCCTCCGTTCCT 57.477 45.455 0.00 0.00 0.00 3.36
3373 3697 4.761227 CCTACTATCTACTTCCTCCGTTCC 59.239 50.000 0.00 0.00 0.00 3.62
3374 3698 4.761227 CCCTACTATCTACTTCCTCCGTTC 59.239 50.000 0.00 0.00 0.00 3.95
3375 3699 4.447470 CCCCTACTATCTACTTCCTCCGTT 60.447 50.000 0.00 0.00 0.00 4.44
3376 3700 3.074242 CCCCTACTATCTACTTCCTCCGT 59.926 52.174 0.00 0.00 0.00 4.69
3377 3701 3.074242 ACCCCTACTATCTACTTCCTCCG 59.926 52.174 0.00 0.00 0.00 4.63
3378 3702 4.409187 CACCCCTACTATCTACTTCCTCC 58.591 52.174 0.00 0.00 0.00 4.30
3379 3703 3.827876 GCACCCCTACTATCTACTTCCTC 59.172 52.174 0.00 0.00 0.00 3.71
3380 3704 3.206866 TGCACCCCTACTATCTACTTCCT 59.793 47.826 0.00 0.00 0.00 3.36
3381 3705 3.321396 GTGCACCCCTACTATCTACTTCC 59.679 52.174 5.22 0.00 0.00 3.46
3382 3706 3.958798 TGTGCACCCCTACTATCTACTTC 59.041 47.826 15.69 0.00 0.00 3.01
3383 3707 3.705072 GTGTGCACCCCTACTATCTACTT 59.295 47.826 15.69 0.00 0.00 2.24
3384 3708 3.297736 GTGTGCACCCCTACTATCTACT 58.702 50.000 15.69 0.00 0.00 2.57
3399 3723 4.096833 GCAATATTTCTCCATCTGTGTGCA 59.903 41.667 0.00 0.00 0.00 4.57
3422 3746 3.691575 TGCGGAGGATAGGAGAGATTAG 58.308 50.000 0.00 0.00 0.00 1.73
3510 3837 2.864343 CGTGTTCTCGGAATGGGTATTC 59.136 50.000 0.00 0.00 41.59 1.75
3526 3853 1.142060 TGGTGATCAGGAAACCGTGTT 59.858 47.619 0.00 0.00 36.73 3.32
3527 3854 0.762418 TGGTGATCAGGAAACCGTGT 59.238 50.000 0.00 0.00 36.73 4.49
3528 3855 2.113860 ATGGTGATCAGGAAACCGTG 57.886 50.000 0.00 0.00 36.73 4.94
3529 3856 2.879103 AATGGTGATCAGGAAACCGT 57.121 45.000 0.00 0.00 36.73 4.83
3530 3857 3.426159 CGAAAATGGTGATCAGGAAACCG 60.426 47.826 0.00 0.00 36.73 4.44
3531 3858 3.506067 ACGAAAATGGTGATCAGGAAACC 59.494 43.478 0.00 0.00 34.38 3.27
3532 3859 4.766404 ACGAAAATGGTGATCAGGAAAC 57.234 40.909 0.00 0.00 0.00 2.78
3533 3860 5.278758 GGAAACGAAAATGGTGATCAGGAAA 60.279 40.000 0.00 0.00 0.00 3.13
3534 3861 4.217550 GGAAACGAAAATGGTGATCAGGAA 59.782 41.667 0.00 0.00 0.00 3.36
3535 3862 3.756434 GGAAACGAAAATGGTGATCAGGA 59.244 43.478 0.00 0.00 0.00 3.86
3552 3879 4.081254 ACGTAGGTTTAGATCCCTGGAAAC 60.081 45.833 0.00 0.00 32.08 2.78
3615 3943 6.214615 TGTGAAGGGATTACTATCCTTTGTGA 59.785 38.462 6.30 0.00 46.83 3.58
3669 3997 5.427157 TGGAGGCAGTATTTCATAAGGTACA 59.573 40.000 0.00 0.00 0.00 2.90
3716 4044 9.946165 CAGTAAAACGTGTCTATATACATCTGA 57.054 33.333 0.00 0.00 0.00 3.27
3718 4046 9.731819 CACAGTAAAACGTGTCTATATACATCT 57.268 33.333 0.00 0.00 0.00 2.90
3719 4047 9.512435 ACACAGTAAAACGTGTCTATATACATC 57.488 33.333 0.00 0.00 42.61 3.06
3720 4048 9.865321 AACACAGTAAAACGTGTCTATATACAT 57.135 29.630 0.00 0.00 45.37 2.29
3722 4050 9.947897 CAAACACAGTAAAACGTGTCTATATAC 57.052 33.333 0.00 0.00 45.37 1.47
3724 4052 8.597662 ACAAACACAGTAAAACGTGTCTATAT 57.402 30.769 0.00 0.00 45.37 0.86
3727 4066 6.724694 AACAAACACAGTAAAACGTGTCTA 57.275 33.333 0.00 0.00 45.37 2.59
3734 4073 8.481974 AAATGGGTAAACAAACACAGTAAAAC 57.518 30.769 0.00 0.00 35.92 2.43
3740 4079 5.901552 ACTGAAATGGGTAAACAAACACAG 58.098 37.500 0.00 0.00 35.92 3.66
3747 4086 3.495434 ACGGACTGAAATGGGTAAACA 57.505 42.857 0.00 0.00 0.00 2.83
3751 4090 6.407299 GGACTAAATACGGACTGAAATGGGTA 60.407 42.308 0.00 0.00 0.00 3.69
3754 4093 5.424757 TGGACTAAATACGGACTGAAATGG 58.575 41.667 0.00 0.00 0.00 3.16
3795 4134 8.337739 ACTCCCTCCGTTCACTAATATAGATAT 58.662 37.037 0.00 0.00 0.00 1.63
3806 4145 4.456662 AGATATACTCCCTCCGTTCACT 57.543 45.455 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.