Multiple sequence alignment - TraesCS6A01G299600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G299600 chr6A 100.000 5073 0 0 457 5529 532843091 532848163 0.000000e+00 9369.0
1 TraesCS6A01G299600 chr6A 94.545 165 9 0 4683 4847 78517705 78517541 7.110000e-64 255.0
2 TraesCS6A01G299600 chr6A 91.620 179 14 1 4684 4861 1829853 1830031 4.280000e-61 246.0
3 TraesCS6A01G299600 chr6A 91.209 182 12 3 4669 4848 96715944 96716123 1.540000e-60 244.0
4 TraesCS6A01G299600 chr6A 77.204 465 67 28 3720 4175 532872987 532873421 9.260000e-58 235.0
5 TraesCS6A01G299600 chr6A 100.000 68 0 0 1 68 532842635 532842702 5.810000e-25 126.0
6 TraesCS6A01G299600 chr6A 83.333 138 17 3 3796 3933 532846352 532846483 7.520000e-24 122.0
7 TraesCS6A01G299600 chr6A 83.333 138 17 3 3718 3849 532846430 532846567 7.520000e-24 122.0
8 TraesCS6A01G299600 chr6A 86.667 105 4 5 5210 5304 532877851 532877955 2.110000e-19 108.0
9 TraesCS6A01G299600 chr6B 88.585 1717 104 38 1939 3622 578691608 578693265 0.000000e+00 2001.0
10 TraesCS6A01G299600 chr6B 90.009 1091 72 15 3620 4681 578693296 578694378 0.000000e+00 1376.0
11 TraesCS6A01G299600 chr6B 93.792 741 29 9 781 1520 578678894 578679618 0.000000e+00 1098.0
12 TraesCS6A01G299600 chr6B 95.868 363 14 1 1512 1873 578689927 578690289 2.220000e-163 586.0
13 TraesCS6A01G299600 chr6B 75.358 698 107 44 1198 1881 578555766 578556412 5.460000e-70 276.0
14 TraesCS6A01G299600 chr6B 92.617 149 8 3 5305 5451 578694654 578694801 1.560000e-50 211.0
15 TraesCS6A01G299600 chr6B 78.994 338 35 10 3784 4097 578745232 578745557 1.210000e-46 198.0
16 TraesCS6A01G299600 chr6B 92.701 137 8 2 5176 5311 578694495 578694630 4.370000e-46 196.0
17 TraesCS6A01G299600 chr6B 89.764 127 7 2 4865 4991 578694379 578694499 2.060000e-34 158.0
18 TraesCS6A01G299600 chr6B 73.353 668 72 43 3480 4106 578557088 578557690 3.450000e-32 150.0
19 TraesCS6A01G299600 chr6B 86.131 137 16 2 3796 3932 578693403 578693536 1.610000e-30 145.0
20 TraesCS6A01G299600 chr6B 96.923 65 1 1 4 68 578672295 578672358 2.110000e-19 108.0
21 TraesCS6A01G299600 chr6B 75.194 258 35 14 851 1105 578744732 578744963 1.640000e-15 95.3
22 TraesCS6A01G299600 chr6D 94.286 1190 41 12 834 2017 387720474 387721642 0.000000e+00 1796.0
23 TraesCS6A01G299600 chr6D 88.058 1097 84 24 3620 4681 387723614 387724698 0.000000e+00 1256.0
24 TraesCS6A01G299600 chr6D 89.289 971 61 15 2667 3616 387722620 387723568 0.000000e+00 1177.0
25 TraesCS6A01G299600 chr6D 90.486 473 35 4 2021 2490 387721719 387722184 2.830000e-172 616.0
26 TraesCS6A01G299600 chr6D 90.598 468 26 8 4846 5311 387724697 387725148 6.130000e-169 604.0
27 TraesCS6A01G299600 chr6D 74.928 1041 145 74 932 1927 387648782 387649751 2.430000e-98 370.0
28 TraesCS6A01G299600 chr6D 90.909 99 9 0 5208 5306 387733737 387733835 3.470000e-27 134.0
29 TraesCS6A01G299600 chr6D 87.963 108 13 0 2522 2629 387722260 387722367 1.620000e-25 128.0
30 TraesCS6A01G299600 chr6D 93.506 77 3 2 5454 5529 387725528 387725603 4.530000e-21 113.0
31 TraesCS6A01G299600 chr6D 87.368 95 8 1 5305 5399 387725172 387725262 7.570000e-19 106.0
32 TraesCS6A01G299600 chr6D 95.000 40 2 0 845 884 387728811 387728850 4.620000e-06 63.9
33 TraesCS6A01G299600 chr2B 94.578 166 9 0 4684 4849 36849473 36849308 1.980000e-64 257.0
34 TraesCS6A01G299600 chr2B 95.238 42 2 0 9 50 212168284 212168243 3.570000e-07 67.6
35 TraesCS6A01G299600 chr5A 93.567 171 11 0 4680 4850 582916448 582916618 7.110000e-64 255.0
36 TraesCS6A01G299600 chr5A 89.796 49 4 1 8 55 698620907 698620859 1.660000e-05 62.1
37 TraesCS6A01G299600 chr3A 93.023 172 12 0 4676 4847 1759872 1759701 9.190000e-63 252.0
38 TraesCS6A01G299600 chr4A 92.529 174 13 0 4678 4851 464113021 464112848 3.310000e-62 250.0
39 TraesCS6A01G299600 chr1A 92.857 168 12 0 4680 4847 582765079 582764912 1.540000e-60 244.0
40 TraesCS6A01G299600 chr1A 91.209 182 13 2 4684 4864 589242639 589242460 1.540000e-60 244.0
41 TraesCS6A01G299600 chr5B 95.556 45 2 0 19 63 75748022 75748066 7.680000e-09 73.1
42 TraesCS6A01G299600 chr2D 87.037 54 7 0 10 63 308701745 308701798 1.660000e-05 62.1
43 TraesCS6A01G299600 chr1B 94.737 38 2 0 13 50 352396911 352396948 5.980000e-05 60.2
44 TraesCS6A01G299600 chr5D 97.143 35 0 1 16 49 362865848 362865814 2.150000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G299600 chr6A 532842635 532848163 5528 False 2434.750000 9369 91.666500 1 5529 4 chr6A.!!$F5 5528
1 TraesCS6A01G299600 chr6B 578678894 578679618 724 False 1098.000000 1098 93.792000 781 1520 1 chr6B.!!$F2 739
2 TraesCS6A01G299600 chr6B 578689927 578694801 4874 False 667.571429 2001 90.810714 1512 5451 7 chr6B.!!$F4 3939
3 TraesCS6A01G299600 chr6B 578555766 578557690 1924 False 213.000000 276 74.355500 1198 4106 2 chr6B.!!$F3 2908
4 TraesCS6A01G299600 chr6D 387720474 387728850 8376 False 651.100000 1796 90.728222 834 5529 9 chr6D.!!$F3 4695
5 TraesCS6A01G299600 chr6D 387648782 387649751 969 False 370.000000 370 74.928000 932 1927 1 chr6D.!!$F1 995

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
671 672 0.035739 TTTCTGGCGAGGGTTACCAC 59.964 55.0 2.98 0.0 40.13 4.16 F
712 713 0.106369 ACCCATCGATACTGGACCGA 60.106 55.0 13.12 0.0 35.70 4.69 F
713 714 0.314302 CCCATCGATACTGGACCGAC 59.686 60.0 5.07 0.0 35.70 4.79 F
2579 4235 0.248565 GGTGAGGACGGGGTTTAGTC 59.751 60.0 0.00 0.0 36.70 2.59 F
3782 5789 0.832626 TCAGGTGCCGATGATGACAT 59.167 50.0 0.00 0.0 39.67 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2468 4080 0.874390 TTGTCTCCTGCGATTTGTGC 59.126 50.000 0.00 0.0 0.00 4.57 R
2558 4214 1.533753 TAAACCCCGTCCTCACCGT 60.534 57.895 0.00 0.0 0.00 4.83 R
2592 4248 3.433306 TCATGAAAACCCTCGGTGAAT 57.567 42.857 0.00 0.0 35.34 2.57 R
4128 6201 0.957395 CGTCCATTGCTGCTTCTGGT 60.957 55.000 0.00 0.0 0.00 4.00 R
5098 7185 0.105778 CTGAAGAATCCGAGCTCCCC 59.894 60.000 8.47 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.942872 ACAGAAGAAAGTTGAAGTGTGTTG 58.057 37.500 0.00 0.00 0.00 3.33
25 26 5.705441 ACAGAAGAAAGTTGAAGTGTGTTGA 59.295 36.000 0.00 0.00 0.00 3.18
26 27 6.206634 ACAGAAGAAAGTTGAAGTGTGTTGAA 59.793 34.615 0.00 0.00 0.00 2.69
27 28 6.524586 CAGAAGAAAGTTGAAGTGTGTTGAAC 59.475 38.462 0.00 0.00 0.00 3.18
28 29 5.957842 AGAAAGTTGAAGTGTGTTGAACA 57.042 34.783 0.00 0.00 36.04 3.18
29 30 6.325919 AGAAAGTTGAAGTGTGTTGAACAA 57.674 33.333 0.00 0.00 41.57 2.83
30 31 6.744112 AGAAAGTTGAAGTGTGTTGAACAAA 58.256 32.000 0.00 0.00 41.57 2.83
31 32 7.206687 AGAAAGTTGAAGTGTGTTGAACAAAA 58.793 30.769 0.00 0.00 41.57 2.44
32 33 7.708752 AGAAAGTTGAAGTGTGTTGAACAAAAA 59.291 29.630 0.00 0.00 41.57 1.94
61 62 9.844257 AAACCAATGAAAATCAATAAGGAAACA 57.156 25.926 0.00 0.00 0.00 2.83
62 63 9.844257 AACCAATGAAAATCAATAAGGAAACAA 57.156 25.926 0.00 0.00 0.00 2.83
63 64 9.492973 ACCAATGAAAATCAATAAGGAAACAAG 57.507 29.630 0.00 0.00 0.00 3.16
64 65 9.709495 CCAATGAAAATCAATAAGGAAACAAGA 57.291 29.630 0.00 0.00 0.00 3.02
495 496 8.757164 AAGAAAAACTAGAAACAAACAACAGG 57.243 30.769 0.00 0.00 0.00 4.00
496 497 7.892609 AGAAAAACTAGAAACAAACAACAGGT 58.107 30.769 0.00 0.00 0.00 4.00
497 498 7.812669 AGAAAAACTAGAAACAAACAACAGGTG 59.187 33.333 0.00 0.00 0.00 4.00
498 499 6.827586 AAACTAGAAACAAACAACAGGTGA 57.172 33.333 0.00 0.00 0.00 4.02
499 500 6.827586 AACTAGAAACAAACAACAGGTGAA 57.172 33.333 0.00 0.00 0.00 3.18
500 501 6.827586 ACTAGAAACAAACAACAGGTGAAA 57.172 33.333 0.00 0.00 0.00 2.69
501 502 7.222000 ACTAGAAACAAACAACAGGTGAAAA 57.778 32.000 0.00 0.00 0.00 2.29
502 503 7.662897 ACTAGAAACAAACAACAGGTGAAAAA 58.337 30.769 0.00 0.00 0.00 1.94
537 538 9.952030 AAAAAGGAAAATGAAGAAAACAGGTAA 57.048 25.926 0.00 0.00 0.00 2.85
538 539 9.952030 AAAAGGAAAATGAAGAAAACAGGTAAA 57.048 25.926 0.00 0.00 0.00 2.01
591 592 3.604065 AAAAACGAAAGAAGCGAGACC 57.396 42.857 0.00 0.00 0.00 3.85
592 593 1.137513 AAACGAAAGAAGCGAGACCG 58.862 50.000 0.00 0.00 39.16 4.79
593 594 0.313043 AACGAAAGAAGCGAGACCGA 59.687 50.000 0.00 0.00 38.22 4.69
594 595 0.109689 ACGAAAGAAGCGAGACCGAG 60.110 55.000 0.00 0.00 38.22 4.63
595 596 1.406970 CGAAAGAAGCGAGACCGAGC 61.407 60.000 0.00 0.00 38.22 5.03
596 597 1.406970 GAAAGAAGCGAGACCGAGCG 61.407 60.000 0.00 0.00 38.22 5.03
597 598 1.863662 AAAGAAGCGAGACCGAGCGA 61.864 55.000 0.00 0.00 38.22 4.93
598 599 1.863662 AAGAAGCGAGACCGAGCGAA 61.864 55.000 0.00 0.00 38.22 4.70
599 600 1.226717 GAAGCGAGACCGAGCGAAT 60.227 57.895 0.00 0.00 38.22 3.34
600 601 0.802607 GAAGCGAGACCGAGCGAATT 60.803 55.000 0.00 0.00 38.22 2.17
601 602 1.078759 AAGCGAGACCGAGCGAATTG 61.079 55.000 0.00 0.00 38.22 2.32
602 603 1.516386 GCGAGACCGAGCGAATTGA 60.516 57.895 0.00 0.00 38.22 2.57
603 604 0.872021 GCGAGACCGAGCGAATTGAT 60.872 55.000 0.00 0.00 38.22 2.57
604 605 1.124462 CGAGACCGAGCGAATTGATC 58.876 55.000 0.00 0.00 38.22 2.92
616 617 3.740044 GAATTGATCGAAAACAGCCGA 57.260 42.857 0.00 0.00 39.25 5.54
617 618 4.078363 GAATTGATCGAAAACAGCCGAA 57.922 40.909 0.00 0.00 38.36 4.30
618 619 4.472286 GAATTGATCGAAAACAGCCGAAA 58.528 39.130 0.00 0.00 38.36 3.46
619 620 3.972950 TTGATCGAAAACAGCCGAAAA 57.027 38.095 0.00 0.00 38.36 2.29
620 621 3.972950 TGATCGAAAACAGCCGAAAAA 57.027 38.095 0.00 0.00 38.36 1.94
650 651 4.237207 GGCCGGCCCTGTAGCTAC 62.237 72.222 36.64 17.30 0.00 3.58
651 652 4.237207 GCCGGCCCTGTAGCTACC 62.237 72.222 18.11 4.34 0.00 3.18
652 653 2.444140 CCGGCCCTGTAGCTACCT 60.444 66.667 21.01 0.00 0.00 3.08
653 654 2.064581 CCGGCCCTGTAGCTACCTT 61.065 63.158 21.01 0.00 0.00 3.50
654 655 1.623542 CCGGCCCTGTAGCTACCTTT 61.624 60.000 21.01 0.00 0.00 3.11
655 656 0.179081 CGGCCCTGTAGCTACCTTTC 60.179 60.000 21.01 7.90 0.00 2.62
656 657 1.205055 GGCCCTGTAGCTACCTTTCT 58.795 55.000 21.01 0.00 0.00 2.52
657 658 1.134371 GGCCCTGTAGCTACCTTTCTG 60.134 57.143 21.01 5.20 0.00 3.02
658 659 1.134371 GCCCTGTAGCTACCTTTCTGG 60.134 57.143 21.01 12.38 42.93 3.86
659 660 1.134371 CCCTGTAGCTACCTTTCTGGC 60.134 57.143 21.01 0.00 40.22 4.85
660 661 1.471676 CCTGTAGCTACCTTTCTGGCG 60.472 57.143 21.01 0.00 40.22 5.69
661 662 1.476891 CTGTAGCTACCTTTCTGGCGA 59.523 52.381 21.01 0.00 40.22 5.54
662 663 1.476891 TGTAGCTACCTTTCTGGCGAG 59.523 52.381 21.01 0.00 40.22 5.03
663 664 1.112113 TAGCTACCTTTCTGGCGAGG 58.888 55.000 0.00 0.00 40.22 4.63
664 665 1.153349 GCTACCTTTCTGGCGAGGG 60.153 63.158 0.00 0.00 40.22 4.30
665 666 1.900545 GCTACCTTTCTGGCGAGGGT 61.901 60.000 0.00 0.00 40.22 4.34
666 667 0.613777 CTACCTTTCTGGCGAGGGTT 59.386 55.000 0.78 0.00 40.22 4.11
667 668 1.829222 CTACCTTTCTGGCGAGGGTTA 59.171 52.381 0.78 0.00 40.22 2.85
668 669 0.323957 ACCTTTCTGGCGAGGGTTAC 59.676 55.000 0.00 0.00 40.22 2.50
669 670 0.392595 CCTTTCTGGCGAGGGTTACC 60.393 60.000 0.00 0.00 0.00 2.85
670 671 0.323629 CTTTCTGGCGAGGGTTACCA 59.676 55.000 2.98 0.00 40.13 3.25
671 672 0.035739 TTTCTGGCGAGGGTTACCAC 59.964 55.000 2.98 0.00 40.13 4.16
677 678 2.524300 CGAGGGTTACCACGTTGTG 58.476 57.895 2.98 0.00 44.42 3.33
689 690 4.338710 GTTGTGGCCGGCCCAGTA 62.339 66.667 41.75 22.09 46.54 2.74
690 691 4.028490 TTGTGGCCGGCCCAGTAG 62.028 66.667 41.75 0.00 46.54 2.57
693 694 4.401876 TGGCCGGCCCAGTAGGTA 62.402 66.667 41.75 19.10 39.18 3.08
694 695 3.858225 GGCCGGCCCAGTAGGTAC 61.858 72.222 36.64 5.01 38.26 3.34
695 696 3.858225 GCCGGCCCAGTAGGTACC 61.858 72.222 18.11 2.73 38.26 3.34
696 697 3.159347 CCGGCCCAGTAGGTACCC 61.159 72.222 8.74 0.00 38.26 3.69
697 698 2.364579 CGGCCCAGTAGGTACCCA 60.365 66.667 8.74 0.00 38.26 4.51
698 699 1.764854 CGGCCCAGTAGGTACCCAT 60.765 63.158 8.74 0.00 38.26 4.00
699 700 1.755393 CGGCCCAGTAGGTACCCATC 61.755 65.000 8.74 0.00 38.26 3.51
700 701 1.746517 GCCCAGTAGGTACCCATCG 59.253 63.158 8.74 0.00 38.26 3.84
701 702 0.757935 GCCCAGTAGGTACCCATCGA 60.758 60.000 8.74 0.00 38.26 3.59
702 703 2.011122 CCCAGTAGGTACCCATCGAT 57.989 55.000 8.74 0.00 0.00 3.59
703 704 2.820485 GCCCAGTAGGTACCCATCGATA 60.820 54.545 8.74 0.00 38.26 2.92
704 705 2.824341 CCCAGTAGGTACCCATCGATAC 59.176 54.545 8.74 3.35 0.00 2.24
705 706 3.499926 CCCAGTAGGTACCCATCGATACT 60.500 52.174 8.74 5.85 0.00 2.12
706 707 3.506455 CCAGTAGGTACCCATCGATACTG 59.494 52.174 21.52 21.52 39.71 2.74
707 708 3.506455 CAGTAGGTACCCATCGATACTGG 59.494 52.174 21.04 8.89 37.52 4.00
708 709 3.396946 AGTAGGTACCCATCGATACTGGA 59.603 47.826 8.74 0.00 35.70 3.86
709 710 2.595238 AGGTACCCATCGATACTGGAC 58.405 52.381 8.74 5.12 35.70 4.02
710 711 1.617357 GGTACCCATCGATACTGGACC 59.383 57.143 13.12 9.89 35.70 4.46
711 712 1.268899 GTACCCATCGATACTGGACCG 59.731 57.143 13.12 0.00 35.70 4.79
712 713 0.106369 ACCCATCGATACTGGACCGA 60.106 55.000 13.12 0.00 35.70 4.69
713 714 0.314302 CCCATCGATACTGGACCGAC 59.686 60.000 5.07 0.00 35.70 4.79
714 715 1.319541 CCATCGATACTGGACCGACT 58.680 55.000 0.00 0.00 35.70 4.18
715 716 2.501261 CCATCGATACTGGACCGACTA 58.499 52.381 0.00 0.00 35.70 2.59
716 717 2.882761 CCATCGATACTGGACCGACTAA 59.117 50.000 0.00 0.00 35.70 2.24
717 718 3.506455 CCATCGATACTGGACCGACTAAT 59.494 47.826 0.00 0.00 35.70 1.73
718 719 4.022242 CCATCGATACTGGACCGACTAATT 60.022 45.833 0.00 0.00 35.70 1.40
719 720 4.825546 TCGATACTGGACCGACTAATTC 57.174 45.455 0.00 0.00 0.00 2.17
720 721 3.567164 TCGATACTGGACCGACTAATTCC 59.433 47.826 0.00 0.00 0.00 3.01
721 722 3.305199 CGATACTGGACCGACTAATTCCC 60.305 52.174 0.00 0.00 0.00 3.97
722 723 1.946984 ACTGGACCGACTAATTCCCA 58.053 50.000 0.00 0.00 0.00 4.37
723 724 1.553704 ACTGGACCGACTAATTCCCAC 59.446 52.381 0.00 0.00 0.00 4.61
724 725 0.533491 TGGACCGACTAATTCCCACG 59.467 55.000 0.00 0.00 0.00 4.94
725 726 0.533951 GGACCGACTAATTCCCACGT 59.466 55.000 0.00 0.00 0.00 4.49
726 727 1.636988 GACCGACTAATTCCCACGTG 58.363 55.000 9.08 9.08 0.00 4.49
727 728 0.971386 ACCGACTAATTCCCACGTGT 59.029 50.000 15.65 0.00 0.00 4.49
728 729 1.345415 ACCGACTAATTCCCACGTGTT 59.655 47.619 15.65 4.52 0.00 3.32
729 730 2.224354 ACCGACTAATTCCCACGTGTTT 60.224 45.455 15.65 5.27 0.00 2.83
730 731 2.414138 CCGACTAATTCCCACGTGTTTC 59.586 50.000 15.65 0.00 0.00 2.78
731 732 3.323243 CGACTAATTCCCACGTGTTTCT 58.677 45.455 15.65 0.00 0.00 2.52
732 733 4.487948 CGACTAATTCCCACGTGTTTCTA 58.512 43.478 15.65 0.00 0.00 2.10
733 734 4.925054 CGACTAATTCCCACGTGTTTCTAA 59.075 41.667 15.65 1.45 0.00 2.10
734 735 5.406175 CGACTAATTCCCACGTGTTTCTAAA 59.594 40.000 15.65 0.00 0.00 1.85
735 736 6.073657 CGACTAATTCCCACGTGTTTCTAAAA 60.074 38.462 15.65 0.00 0.00 1.52
736 737 7.518689 CGACTAATTCCCACGTGTTTCTAAAAA 60.519 37.037 15.65 0.00 0.00 1.94
757 758 5.447624 AAAAAGACTAATTCCCACGTTGG 57.552 39.130 0.00 0.00 37.25 3.77
758 759 4.360951 AAAGACTAATTCCCACGTTGGA 57.639 40.909 3.82 3.82 40.96 3.53
759 760 3.611766 AGACTAATTCCCACGTTGGAG 57.388 47.619 8.56 0.00 40.96 3.86
760 761 2.904434 AGACTAATTCCCACGTTGGAGT 59.096 45.455 8.56 2.91 40.96 3.85
761 762 4.091549 AGACTAATTCCCACGTTGGAGTA 58.908 43.478 8.56 4.97 40.96 2.59
762 763 4.081807 AGACTAATTCCCACGTTGGAGTAC 60.082 45.833 8.56 0.21 40.96 2.73
763 764 3.836562 ACTAATTCCCACGTTGGAGTACT 59.163 43.478 8.56 0.00 40.96 2.73
764 765 2.762535 ATTCCCACGTTGGAGTACTG 57.237 50.000 8.56 0.00 40.96 2.74
765 766 1.416243 TTCCCACGTTGGAGTACTGT 58.584 50.000 8.56 0.00 40.96 3.55
766 767 1.416243 TCCCACGTTGGAGTACTGTT 58.584 50.000 3.82 0.00 40.96 3.16
767 768 1.764134 TCCCACGTTGGAGTACTGTTT 59.236 47.619 3.82 0.00 40.96 2.83
768 769 2.171027 TCCCACGTTGGAGTACTGTTTT 59.829 45.455 3.82 0.00 40.96 2.43
769 770 2.946990 CCCACGTTGGAGTACTGTTTTT 59.053 45.455 0.00 0.00 40.96 1.94
883 884 6.432607 TCGTAATGAACTCGAGTCTGTATT 57.567 37.500 20.33 17.40 0.00 1.89
884 885 6.255950 TCGTAATGAACTCGAGTCTGTATTG 58.744 40.000 20.33 7.65 0.00 1.90
887 888 5.860941 ATGAACTCGAGTCTGTATTGGAT 57.139 39.130 20.33 0.00 0.00 3.41
896 897 1.209261 TCTGTATTGGATGCGGCTTCA 59.791 47.619 16.44 2.76 0.00 3.02
928 929 3.778622 AGGTCAATCCCCAGTAGTACT 57.221 47.619 0.00 0.00 36.75 2.73
929 930 3.644335 AGGTCAATCCCCAGTAGTACTC 58.356 50.000 0.00 0.00 36.75 2.59
930 931 2.699321 GGTCAATCCCCAGTAGTACTCC 59.301 54.545 0.00 0.00 0.00 3.85
945 946 1.486211 ACTCCTACATAACGCAGCCT 58.514 50.000 0.00 0.00 0.00 4.58
1018 1033 2.028020 ACGATGTCCTCTCCTTTCCAAC 60.028 50.000 0.00 0.00 0.00 3.77
1310 1346 0.460284 AACGCCATCATCGAGGACAC 60.460 55.000 0.00 0.00 0.00 3.67
1540 1583 1.873863 GCAAGTACAAGAACGGGGC 59.126 57.895 0.00 0.00 0.00 5.80
1817 1860 1.509703 GACCCACGGTGAGTTTTCTC 58.490 55.000 10.28 0.00 46.33 2.87
1821 1864 1.608283 CCACGGTGAGTTTTCTCCTCC 60.608 57.143 10.28 0.00 45.63 4.30
1893 3423 8.776680 TTCTTGTTTGCTAAAAGTAATTCGTC 57.223 30.769 0.00 0.00 0.00 4.20
1915 3446 8.079203 TCGTCTCAAGCTGATTTCTAGATTATC 58.921 37.037 0.00 0.88 0.00 1.75
1969 3500 9.861138 GATATGATTTCTTTCTCAAGAATGTCG 57.139 33.333 0.00 0.00 46.36 4.35
1982 3517 5.120674 TCAAGAATGTCGAACATGTTGCTAG 59.879 40.000 17.58 4.79 37.97 3.42
2092 3702 2.026729 TCATATTTGGCGGTGAAGACCA 60.027 45.455 0.00 0.00 43.33 4.02
2120 3730 1.413077 TCCGTGGTGTGTATGTTCACA 59.587 47.619 0.00 0.00 44.54 3.58
2182 3792 7.416817 CAAATTTCGAAAGGGCAAAAATTTCT 58.583 30.769 16.80 0.00 37.40 2.52
2185 3795 5.017294 TCGAAAGGGCAAAAATTTCTGTT 57.983 34.783 0.00 0.00 32.08 3.16
2375 3986 4.787551 TGACCACTGGTTTGTTGTAGATT 58.212 39.130 1.13 0.00 35.25 2.40
2468 4080 8.017373 AGTTCGTCAACAATTAAACATCTCATG 58.983 33.333 0.00 0.00 34.60 3.07
2512 4143 8.823220 AAATAAATTCTACTAGTGGCCAACAT 57.177 30.769 7.24 0.00 0.00 2.71
2513 4144 9.914834 AAATAAATTCTACTAGTGGCCAACATA 57.085 29.630 7.24 0.00 0.00 2.29
2515 4146 9.914834 ATAAATTCTACTAGTGGCCAACATAAA 57.085 29.630 7.24 0.00 0.00 1.40
2516 4147 8.823220 AAATTCTACTAGTGGCCAACATAAAT 57.177 30.769 7.24 0.00 0.00 1.40
2517 4148 8.451908 AATTCTACTAGTGGCCAACATAAATC 57.548 34.615 7.24 0.00 0.00 2.17
2518 4149 6.808321 TCTACTAGTGGCCAACATAAATCT 57.192 37.500 7.24 0.00 0.00 2.40
2520 4151 7.952671 TCTACTAGTGGCCAACATAAATCTAG 58.047 38.462 7.24 13.96 30.93 2.43
2558 4214 8.713971 TCTTGCTTAGGATTAAATCATACCTCA 58.286 33.333 0.00 0.00 32.90 3.86
2579 4235 0.248565 GGTGAGGACGGGGTTTAGTC 59.751 60.000 0.00 0.00 36.70 2.59
2582 4238 1.264295 GAGGACGGGGTTTAGTCTGT 58.736 55.000 0.00 0.00 37.52 3.41
2592 4248 3.262405 GGGTTTAGTCTGTGGTGTGGATA 59.738 47.826 0.00 0.00 0.00 2.59
2614 4270 3.216187 TCACCGAGGGTTTTCATGAAA 57.784 42.857 16.91 16.91 31.02 2.69
2681 4552 8.833231 AAATTATGTGACCCTCAATATAGTCG 57.167 34.615 0.00 0.00 31.75 4.18
2855 4738 8.540388 TGTAGACATAGCTTCTTGATTTAGGTT 58.460 33.333 0.00 0.00 0.00 3.50
2871 4754 6.995511 TTTAGGTTTCCAATAGACAATCGG 57.004 37.500 0.00 0.00 0.00 4.18
2872 4755 4.837093 AGGTTTCCAATAGACAATCGGA 57.163 40.909 0.00 0.00 0.00 4.55
2873 4756 5.373812 AGGTTTCCAATAGACAATCGGAT 57.626 39.130 0.00 0.00 0.00 4.18
2945 4833 6.494842 TGATGCTATTTTACTTCGCAAATCC 58.505 36.000 0.00 0.00 33.94 3.01
3082 4990 3.760580 ATTTTTGCGGGAATTTGTGGA 57.239 38.095 0.00 0.00 0.00 4.02
3083 4991 3.543680 TTTTTGCGGGAATTTGTGGAA 57.456 38.095 0.00 0.00 0.00 3.53
3182 5090 6.648310 TGAATCAAGACTCAATCTCAGTTCAC 59.352 38.462 0.00 0.00 36.27 3.18
3223 5131 8.197439 CCATATTAAGAAACATTTGACCCTTCC 58.803 37.037 0.00 0.00 0.00 3.46
3286 5194 5.879223 AGTGCTTACTCTCATTTGATTGAGG 59.121 40.000 1.94 0.00 42.78 3.86
3379 5290 1.456296 GATGCATGCAGTTGGACAGA 58.544 50.000 26.69 0.00 0.00 3.41
3618 5544 1.661509 GCTCAAACCGCCTGCAAAC 60.662 57.895 0.00 0.00 0.00 2.93
3637 5605 2.747460 GACGGCATGCAAGCTCCA 60.747 61.111 21.36 0.00 34.17 3.86
3656 5624 3.009033 TCCATTCGGGATGATGGAATACC 59.991 47.826 0.00 0.00 42.15 2.73
3733 5716 2.906897 AACAACGGCCAGGTGCAG 60.907 61.111 11.79 0.00 42.61 4.41
3782 5789 0.832626 TCAGGTGCCGATGATGACAT 59.167 50.000 0.00 0.00 39.67 3.06
3802 5812 2.884571 GCAAACGGCGTACAACGGT 61.885 57.895 15.20 1.25 42.82 4.83
3848 5858 2.664436 GCGTACAACGGTCAGGTGC 61.664 63.158 1.25 0.00 42.61 5.01
3865 5875 4.200287 CCGATGATGACACGGCAA 57.800 55.556 0.00 0.00 40.19 4.52
3925 5941 2.738521 CAGGTGGCGTTCGACTGG 60.739 66.667 0.00 0.00 0.00 4.00
4128 6201 0.816421 CAGATGGCGGTCATGATGCA 60.816 55.000 20.30 10.00 35.97 3.96
4133 6206 1.450134 GCGGTCATGATGCACCAGA 60.450 57.895 15.61 0.00 32.33 3.86
4263 6342 4.421479 CGAGTTCCTCGCCAGCGT 62.421 66.667 12.32 0.00 46.75 5.07
4264 6343 2.811317 GAGTTCCTCGCCAGCGTG 60.811 66.667 12.32 9.56 40.74 5.34
4288 6367 2.179517 GAGCACTACGAGCGCAGT 59.820 61.111 11.47 12.35 37.01 4.40
4414 6496 0.939106 GCAACAACGGCAACCATGAC 60.939 55.000 0.00 0.00 0.00 3.06
4523 6605 1.667724 CCAGTGATCGGTGCTCAATTC 59.332 52.381 0.00 0.00 0.00 2.17
4537 6619 3.181499 GCTCAATTCTGTGATTCCAGCAG 60.181 47.826 0.00 0.00 32.32 4.24
4595 6682 6.210584 TGATCGGTGCTGAAATCTGGTATATA 59.789 38.462 0.00 0.00 0.00 0.86
4596 6683 6.605471 TCGGTGCTGAAATCTGGTATATAT 57.395 37.500 0.00 0.00 0.00 0.86
4616 6703 2.937591 TGGAGATCGTGTGTTCGTTAC 58.062 47.619 0.00 0.00 0.00 2.50
4658 6745 3.131240 AGTGTTTTGTTGACGTCTTGC 57.869 42.857 17.92 7.33 0.00 4.01
4681 6768 6.208402 TGCTTATGCCAGTCTTTCATTGTTAA 59.792 34.615 0.00 0.00 38.71 2.01
4682 6769 6.749118 GCTTATGCCAGTCTTTCATTGTTAAG 59.251 38.462 0.00 0.00 0.00 1.85
4683 6770 7.575720 GCTTATGCCAGTCTTTCATTGTTAAGT 60.576 37.037 0.00 0.00 0.00 2.24
4684 6771 8.856153 TTATGCCAGTCTTTCATTGTTAAGTA 57.144 30.769 0.00 0.00 0.00 2.24
4685 6772 6.554334 TGCCAGTCTTTCATTGTTAAGTAC 57.446 37.500 0.00 0.00 0.00 2.73
4686 6773 6.296026 TGCCAGTCTTTCATTGTTAAGTACT 58.704 36.000 0.00 0.00 0.00 2.73
4687 6774 6.426937 TGCCAGTCTTTCATTGTTAAGTACTC 59.573 38.462 0.00 0.00 0.00 2.59
4688 6775 6.128254 GCCAGTCTTTCATTGTTAAGTACTCC 60.128 42.308 0.00 0.00 0.00 3.85
4689 6776 6.934645 CCAGTCTTTCATTGTTAAGTACTCCA 59.065 38.462 0.00 0.00 0.00 3.86
4690 6777 7.607991 CCAGTCTTTCATTGTTAAGTACTCCAT 59.392 37.037 0.00 0.00 0.00 3.41
4691 6778 8.660373 CAGTCTTTCATTGTTAAGTACTCCATC 58.340 37.037 0.00 0.00 0.00 3.51
4692 6779 7.824779 AGTCTTTCATTGTTAAGTACTCCATCC 59.175 37.037 0.00 0.00 0.00 3.51
4693 6780 6.816640 TCTTTCATTGTTAAGTACTCCATCCG 59.183 38.462 0.00 0.00 0.00 4.18
4694 6781 5.670792 TCATTGTTAAGTACTCCATCCGT 57.329 39.130 0.00 0.00 0.00 4.69
4695 6782 6.045072 TCATTGTTAAGTACTCCATCCGTT 57.955 37.500 0.00 0.00 0.00 4.44
4696 6783 6.103997 TCATTGTTAAGTACTCCATCCGTTC 58.896 40.000 0.00 0.00 0.00 3.95
4697 6784 5.733620 TTGTTAAGTACTCCATCCGTTCT 57.266 39.130 0.00 0.00 0.00 3.01
4698 6785 5.733620 TGTTAAGTACTCCATCCGTTCTT 57.266 39.130 0.00 0.00 0.00 2.52
4699 6786 6.839124 TGTTAAGTACTCCATCCGTTCTTA 57.161 37.500 0.00 0.00 0.00 2.10
4700 6787 7.230849 TGTTAAGTACTCCATCCGTTCTTAA 57.769 36.000 0.00 0.00 34.23 1.85
4701 6788 7.669427 TGTTAAGTACTCCATCCGTTCTTAAA 58.331 34.615 0.00 0.00 36.60 1.52
4702 6789 8.316214 TGTTAAGTACTCCATCCGTTCTTAAAT 58.684 33.333 0.00 0.00 36.60 1.40
4703 6790 9.807649 GTTAAGTACTCCATCCGTTCTTAAATA 57.192 33.333 0.00 0.00 36.60 1.40
4706 6793 9.901172 AAGTACTCCATCCGTTCTTAAATATTT 57.099 29.630 5.89 5.89 0.00 1.40
4707 6794 9.326413 AGTACTCCATCCGTTCTTAAATATTTG 57.674 33.333 11.05 0.00 0.00 2.32
4708 6795 9.106070 GTACTCCATCCGTTCTTAAATATTTGT 57.894 33.333 11.05 0.00 0.00 2.83
4709 6796 8.575649 ACTCCATCCGTTCTTAAATATTTGTT 57.424 30.769 11.05 0.00 0.00 2.83
4710 6797 9.020731 ACTCCATCCGTTCTTAAATATTTGTTT 57.979 29.630 11.05 0.00 0.00 2.83
4711 6798 9.855021 CTCCATCCGTTCTTAAATATTTGTTTT 57.145 29.630 11.05 0.00 0.00 2.43
4785 6872 9.624697 TTTACAATGTAGATTCACTCATTTTGC 57.375 29.630 0.00 0.00 30.25 3.68
4786 6873 7.458409 ACAATGTAGATTCACTCATTTTGCT 57.542 32.000 0.00 0.00 30.25 3.91
4787 6874 7.533426 ACAATGTAGATTCACTCATTTTGCTC 58.467 34.615 0.00 0.00 30.25 4.26
4788 6875 6.690194 ATGTAGATTCACTCATTTTGCTCC 57.310 37.500 0.00 0.00 0.00 4.70
4789 6876 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4790 6877 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4791 6878 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4792 6879 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4793 6880 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4794 6881 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4795 6882 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4796 6883 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4797 6884 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4798 6885 5.351465 CACTCATTTTGCTCCGTATGTAGTT 59.649 40.000 0.00 0.00 0.00 2.24
4799 6886 6.533723 CACTCATTTTGCTCCGTATGTAGTTA 59.466 38.462 0.00 0.00 0.00 2.24
4800 6887 6.534079 ACTCATTTTGCTCCGTATGTAGTTAC 59.466 38.462 0.00 0.00 0.00 2.50
4801 6888 6.636705 TCATTTTGCTCCGTATGTAGTTACT 58.363 36.000 0.00 0.00 0.00 2.24
4802 6889 7.101054 TCATTTTGCTCCGTATGTAGTTACTT 58.899 34.615 0.00 0.00 0.00 2.24
4803 6890 6.715344 TTTTGCTCCGTATGTAGTTACTTG 57.285 37.500 0.00 0.00 0.00 3.16
4804 6891 5.395682 TTGCTCCGTATGTAGTTACTTGT 57.604 39.130 0.00 0.00 0.00 3.16
4805 6892 5.395682 TGCTCCGTATGTAGTTACTTGTT 57.604 39.130 0.00 0.00 0.00 2.83
4806 6893 5.165676 TGCTCCGTATGTAGTTACTTGTTG 58.834 41.667 0.00 0.00 0.00 3.33
4807 6894 5.047872 TGCTCCGTATGTAGTTACTTGTTGA 60.048 40.000 0.00 0.00 0.00 3.18
4808 6895 5.865552 GCTCCGTATGTAGTTACTTGTTGAA 59.134 40.000 0.00 0.00 0.00 2.69
4809 6896 6.366877 GCTCCGTATGTAGTTACTTGTTGAAA 59.633 38.462 0.00 0.00 0.00 2.69
4810 6897 7.064253 GCTCCGTATGTAGTTACTTGTTGAAAT 59.936 37.037 0.00 0.00 0.00 2.17
4811 6898 8.246908 TCCGTATGTAGTTACTTGTTGAAATG 57.753 34.615 0.00 0.00 0.00 2.32
4812 6899 6.959311 CCGTATGTAGTTACTTGTTGAAATGC 59.041 38.462 0.00 0.00 0.00 3.56
4813 6900 6.959311 CGTATGTAGTTACTTGTTGAAATGCC 59.041 38.462 0.00 0.00 0.00 4.40
4814 6901 7.148474 CGTATGTAGTTACTTGTTGAAATGCCT 60.148 37.037 0.00 0.00 0.00 4.75
4815 6902 9.158233 GTATGTAGTTACTTGTTGAAATGCCTA 57.842 33.333 0.00 0.00 0.00 3.93
4816 6903 7.667043 TGTAGTTACTTGTTGAAATGCCTAG 57.333 36.000 0.00 0.00 0.00 3.02
4817 6904 7.446769 TGTAGTTACTTGTTGAAATGCCTAGA 58.553 34.615 0.00 0.00 0.00 2.43
4818 6905 7.934665 TGTAGTTACTTGTTGAAATGCCTAGAA 59.065 33.333 0.00 0.00 0.00 2.10
4819 6906 7.817418 AGTTACTTGTTGAAATGCCTAGAAA 57.183 32.000 0.00 0.00 0.00 2.52
4820 6907 8.232913 AGTTACTTGTTGAAATGCCTAGAAAA 57.767 30.769 0.00 0.00 0.00 2.29
4821 6908 8.691797 AGTTACTTGTTGAAATGCCTAGAAAAA 58.308 29.630 0.00 0.00 0.00 1.94
4822 6909 8.752254 GTTACTTGTTGAAATGCCTAGAAAAAC 58.248 33.333 0.00 0.00 0.00 2.43
4823 6910 6.872920 ACTTGTTGAAATGCCTAGAAAAACA 58.127 32.000 0.00 0.00 0.00 2.83
4824 6911 7.327214 ACTTGTTGAAATGCCTAGAAAAACAA 58.673 30.769 0.00 0.00 35.60 2.83
4825 6912 7.769272 TTGTTGAAATGCCTAGAAAAACAAG 57.231 32.000 0.00 0.00 32.89 3.16
4826 6913 6.872920 TGTTGAAATGCCTAGAAAAACAAGT 58.127 32.000 0.00 0.00 0.00 3.16
4827 6914 8.001881 TGTTGAAATGCCTAGAAAAACAAGTA 57.998 30.769 0.00 0.00 0.00 2.24
4828 6915 8.637986 TGTTGAAATGCCTAGAAAAACAAGTAT 58.362 29.630 0.00 0.00 0.00 2.12
4829 6916 9.476202 GTTGAAATGCCTAGAAAAACAAGTATT 57.524 29.630 0.00 0.00 0.00 1.89
4834 6921 9.528489 AATGCCTAGAAAAACAAGTATTTAGGA 57.472 29.630 0.00 0.00 0.00 2.94
4835 6922 8.927675 TGCCTAGAAAAACAAGTATTTAGGAA 57.072 30.769 0.00 0.00 0.00 3.36
4836 6923 8.789762 TGCCTAGAAAAACAAGTATTTAGGAAC 58.210 33.333 0.00 0.00 0.00 3.62
4837 6924 8.789762 GCCTAGAAAAACAAGTATTTAGGAACA 58.210 33.333 0.00 0.00 0.00 3.18
4841 6928 9.067986 AGAAAAACAAGTATTTAGGAACAGAGG 57.932 33.333 0.00 0.00 0.00 3.69
4842 6929 7.761038 AAAACAAGTATTTAGGAACAGAGGG 57.239 36.000 0.00 0.00 0.00 4.30
4843 6930 6.697641 AACAAGTATTTAGGAACAGAGGGA 57.302 37.500 0.00 0.00 0.00 4.20
4844 6931 6.301169 ACAAGTATTTAGGAACAGAGGGAG 57.699 41.667 0.00 0.00 0.00 4.30
4845 6932 5.785940 ACAAGTATTTAGGAACAGAGGGAGT 59.214 40.000 0.00 0.00 0.00 3.85
4846 6933 6.958192 ACAAGTATTTAGGAACAGAGGGAGTA 59.042 38.462 0.00 0.00 0.00 2.59
4863 6950 5.071923 AGGGAGTAGTTGTAAGCTGAAACTT 59.928 40.000 12.57 0.00 35.77 2.66
4883 6970 4.022676 ACTTCTTGGTCTCTTTCTCGACTC 60.023 45.833 0.00 0.00 0.00 3.36
4887 6974 2.963101 TGGTCTCTTTCTCGACTCCAAA 59.037 45.455 0.00 0.00 0.00 3.28
4888 6975 3.243771 TGGTCTCTTTCTCGACTCCAAAC 60.244 47.826 0.00 0.00 0.00 2.93
4889 6976 3.243771 GGTCTCTTTCTCGACTCCAAACA 60.244 47.826 0.00 0.00 0.00 2.83
4890 6977 4.369182 GTCTCTTTCTCGACTCCAAACAA 58.631 43.478 0.00 0.00 0.00 2.83
4938 7025 6.822442 TGGAATAGTTTGTGTGTTCTGTAGA 58.178 36.000 0.00 0.00 0.00 2.59
4939 7026 7.276658 TGGAATAGTTTGTGTGTTCTGTAGAA 58.723 34.615 0.00 0.00 0.00 2.10
4969 7056 3.206150 TGTGCTTCTGTGGTTTCTCTTC 58.794 45.455 0.00 0.00 0.00 2.87
5012 7099 3.576982 TGACAGACGGTATTGGAGAAAGT 59.423 43.478 0.00 0.00 0.00 2.66
5020 7107 5.421056 ACGGTATTGGAGAAAGTATGACTCA 59.579 40.000 0.00 0.00 33.00 3.41
5023 7110 3.895232 TGGAGAAAGTATGACTCAGGC 57.105 47.619 0.00 0.00 33.00 4.85
5036 7123 4.323417 TGACTCAGGCACGATTTAATTGT 58.677 39.130 0.00 0.00 0.00 2.71
5038 7125 5.046910 ACTCAGGCACGATTTAATTGTTG 57.953 39.130 0.00 0.00 0.00 3.33
5053 7140 7.793927 TTAATTGTTGGATTTGGTTTGGTTC 57.206 32.000 0.00 0.00 0.00 3.62
5058 7145 2.235891 GGATTTGGTTTGGTTCGGTCT 58.764 47.619 0.00 0.00 0.00 3.85
5063 7150 2.294074 TGGTTTGGTTCGGTCTCTTTG 58.706 47.619 0.00 0.00 0.00 2.77
5064 7151 1.001706 GGTTTGGTTCGGTCTCTTTGC 60.002 52.381 0.00 0.00 0.00 3.68
5065 7152 1.947456 GTTTGGTTCGGTCTCTTTGCT 59.053 47.619 0.00 0.00 0.00 3.91
5071 7158 3.394719 GTTCGGTCTCTTTGCTTCTTCT 58.605 45.455 0.00 0.00 0.00 2.85
5076 7163 6.053005 TCGGTCTCTTTGCTTCTTCTTTTTA 58.947 36.000 0.00 0.00 0.00 1.52
5098 7185 8.975410 TTTATCAATGTTCAGAAGCAAAGATG 57.025 30.769 0.00 0.00 0.00 2.90
5107 7194 0.393537 AAGCAAAGATGGGGAGCTCG 60.394 55.000 7.83 0.00 33.83 5.03
5112 7199 0.761802 AAGATGGGGAGCTCGGATTC 59.238 55.000 7.83 2.55 0.00 2.52
5121 7208 0.177604 AGCTCGGATTCTTCAGCCAG 59.822 55.000 0.00 0.00 31.81 4.85
5143 7230 1.212751 GGCAAGATTTGTCCACGGC 59.787 57.895 0.00 0.00 0.00 5.68
5164 7251 3.620472 GCTGACAATTTTCATGGCCCAAT 60.620 43.478 0.00 0.00 0.00 3.16
5165 7252 4.581868 CTGACAATTTTCATGGCCCAATT 58.418 39.130 0.00 0.00 0.00 2.32
5166 7253 5.732633 CTGACAATTTTCATGGCCCAATTA 58.267 37.500 0.00 0.00 0.00 1.40
5167 7254 6.119240 TGACAATTTTCATGGCCCAATTAA 57.881 33.333 0.00 0.00 0.00 1.40
5173 7260 6.811634 TTTTCATGGCCCAATTAATCTCAT 57.188 33.333 0.00 0.00 0.00 2.90
5179 7266 5.708544 TGGCCCAATTAATCTCATCTGATT 58.291 37.500 0.00 0.00 39.63 2.57
5181 7268 6.041182 TGGCCCAATTAATCTCATCTGATTTG 59.959 38.462 0.00 0.00 37.73 2.32
5186 7273 6.798315 ATTAATCTCATCTGATTTGAGCCG 57.202 37.500 3.86 0.00 40.35 5.52
5196 7283 4.933563 TTGAGCCGCTGCAGTGCA 62.934 61.111 25.46 18.58 41.13 4.57
5208 7297 1.675310 CAGTGCAGGCCAAATCGGA 60.675 57.895 5.01 0.00 36.56 4.55
5209 7298 1.377725 AGTGCAGGCCAAATCGGAG 60.378 57.895 5.01 0.00 36.56 4.63
5210 7299 2.045045 TGCAGGCCAAATCGGAGG 60.045 61.111 5.01 0.00 36.56 4.30
5215 7304 3.200522 GCCAAATCGGAGGCCAAG 58.799 61.111 5.01 0.00 45.18 3.61
5216 7305 1.378514 GCCAAATCGGAGGCCAAGA 60.379 57.895 5.01 0.43 45.18 3.02
5245 7334 1.276622 AAACGCTGACCCTGACCTAT 58.723 50.000 0.00 0.00 0.00 2.57
5431 7551 3.591196 AAGCTGACTTCAGAGCTAGTG 57.409 47.619 10.54 0.00 44.97 2.74
5433 7553 3.364549 AGCTGACTTCAGAGCTAGTGAT 58.635 45.455 10.54 0.00 46.59 3.06
5435 7555 3.446799 CTGACTTCAGAGCTAGTGATGC 58.553 50.000 0.00 5.66 46.59 3.91
5451 7572 2.682856 TGATGCGGCTTTCAGGAATTAC 59.317 45.455 0.00 0.00 0.00 1.89
5482 7841 1.064017 AGGTTTGCCAACAGGACAAGA 60.064 47.619 2.78 0.00 37.19 3.02
5483 7842 1.338020 GGTTTGCCAACAGGACAAGAG 59.662 52.381 2.78 0.00 34.15 2.85
5485 7844 0.843309 TTGCCAACAGGACAAGAGGA 59.157 50.000 0.00 0.00 0.00 3.71
5497 7856 6.183347 CAGGACAAGAGGAAATTCTTACCAT 58.817 40.000 0.00 0.00 35.70 3.55
5504 7863 5.952347 AGAGGAAATTCTTACCATTCAACCC 59.048 40.000 0.00 0.00 0.00 4.11
5507 7866 5.105351 GGAAATTCTTACCATTCAACCCAGG 60.105 44.000 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.876789 TCAACACACTTCAACTTTCTTCTGTA 59.123 34.615 0.00 0.00 0.00 2.74
2 3 6.182039 TCAACACACTTCAACTTTCTTCTG 57.818 37.500 0.00 0.00 0.00 3.02
3 4 6.206634 TGTTCAACACACTTCAACTTTCTTCT 59.793 34.615 0.00 0.00 0.00 2.85
4 5 6.378582 TGTTCAACACACTTCAACTTTCTTC 58.621 36.000 0.00 0.00 0.00 2.87
5 6 6.325919 TGTTCAACACACTTCAACTTTCTT 57.674 33.333 0.00 0.00 0.00 2.52
6 7 5.957842 TGTTCAACACACTTCAACTTTCT 57.042 34.783 0.00 0.00 0.00 2.52
7 8 7.401484 TTTTGTTCAACACACTTCAACTTTC 57.599 32.000 0.00 0.00 33.98 2.62
8 9 7.778470 TTTTTGTTCAACACACTTCAACTTT 57.222 28.000 0.00 0.00 33.98 2.66
35 36 9.844257 TGTTTCCTTATTGATTTTCATTGGTTT 57.156 25.926 0.00 0.00 0.00 3.27
36 37 9.844257 TTGTTTCCTTATTGATTTTCATTGGTT 57.156 25.926 0.00 0.00 0.00 3.67
37 38 9.492973 CTTGTTTCCTTATTGATTTTCATTGGT 57.507 29.630 0.00 0.00 0.00 3.67
38 39 9.709495 TCTTGTTTCCTTATTGATTTTCATTGG 57.291 29.630 0.00 0.00 0.00 3.16
469 470 9.203421 CCTGTTGTTTGTTTCTAGTTTTTCTTT 57.797 29.630 0.00 0.00 0.00 2.52
470 471 8.364894 ACCTGTTGTTTGTTTCTAGTTTTTCTT 58.635 29.630 0.00 0.00 0.00 2.52
471 472 7.812669 CACCTGTTGTTTGTTTCTAGTTTTTCT 59.187 33.333 0.00 0.00 0.00 2.52
472 473 7.810759 TCACCTGTTGTTTGTTTCTAGTTTTTC 59.189 33.333 0.00 0.00 0.00 2.29
473 474 7.662897 TCACCTGTTGTTTGTTTCTAGTTTTT 58.337 30.769 0.00 0.00 0.00 1.94
474 475 7.222000 TCACCTGTTGTTTGTTTCTAGTTTT 57.778 32.000 0.00 0.00 0.00 2.43
475 476 6.827586 TCACCTGTTGTTTGTTTCTAGTTT 57.172 33.333 0.00 0.00 0.00 2.66
476 477 6.827586 TTCACCTGTTGTTTGTTTCTAGTT 57.172 33.333 0.00 0.00 0.00 2.24
477 478 6.827586 TTTCACCTGTTGTTTGTTTCTAGT 57.172 33.333 0.00 0.00 0.00 2.57
511 512 9.952030 TTACCTGTTTTCTTCATTTTCCTTTTT 57.048 25.926 0.00 0.00 0.00 1.94
512 513 9.952030 TTTACCTGTTTTCTTCATTTTCCTTTT 57.048 25.926 0.00 0.00 0.00 2.27
571 572 2.033151 CGGTCTCGCTTCTTTCGTTTTT 60.033 45.455 0.00 0.00 0.00 1.94
572 573 1.525619 CGGTCTCGCTTCTTTCGTTTT 59.474 47.619 0.00 0.00 0.00 2.43
573 574 1.137513 CGGTCTCGCTTCTTTCGTTT 58.862 50.000 0.00 0.00 0.00 3.60
574 575 0.313043 TCGGTCTCGCTTCTTTCGTT 59.687 50.000 0.00 0.00 36.13 3.85
575 576 0.109689 CTCGGTCTCGCTTCTTTCGT 60.110 55.000 0.00 0.00 36.13 3.85
576 577 1.406970 GCTCGGTCTCGCTTCTTTCG 61.407 60.000 0.00 0.00 36.13 3.46
577 578 1.406970 CGCTCGGTCTCGCTTCTTTC 61.407 60.000 0.00 0.00 36.13 2.62
578 579 1.444553 CGCTCGGTCTCGCTTCTTT 60.445 57.895 0.00 0.00 36.13 2.52
579 580 1.863662 TTCGCTCGGTCTCGCTTCTT 61.864 55.000 0.00 0.00 36.13 2.52
580 581 1.658686 ATTCGCTCGGTCTCGCTTCT 61.659 55.000 0.00 0.00 36.13 2.85
581 582 0.802607 AATTCGCTCGGTCTCGCTTC 60.803 55.000 0.00 0.00 36.13 3.86
582 583 1.078759 CAATTCGCTCGGTCTCGCTT 61.079 55.000 0.00 0.00 36.13 4.68
583 584 1.517257 CAATTCGCTCGGTCTCGCT 60.517 57.895 0.00 0.00 36.13 4.93
584 585 0.872021 ATCAATTCGCTCGGTCTCGC 60.872 55.000 0.00 0.00 36.13 5.03
585 586 1.124462 GATCAATTCGCTCGGTCTCG 58.876 55.000 0.00 0.00 37.82 4.04
586 587 1.124462 CGATCAATTCGCTCGGTCTC 58.876 55.000 0.00 0.00 41.69 3.36
587 588 3.258225 CGATCAATTCGCTCGGTCT 57.742 52.632 0.00 0.00 41.69 3.85
596 597 3.740044 TCGGCTGTTTTCGATCAATTC 57.260 42.857 0.00 0.00 0.00 2.17
597 598 4.497473 TTTCGGCTGTTTTCGATCAATT 57.503 36.364 0.00 0.00 35.25 2.32
598 599 4.497473 TTTTCGGCTGTTTTCGATCAAT 57.503 36.364 0.00 0.00 35.25 2.57
599 600 3.972950 TTTTCGGCTGTTTTCGATCAA 57.027 38.095 0.00 0.00 35.25 2.57
600 601 3.972950 TTTTTCGGCTGTTTTCGATCA 57.027 38.095 0.00 0.00 35.25 2.92
618 619 0.601057 CGGCCCATTTCCGTCTTTTT 59.399 50.000 0.00 0.00 41.85 1.94
619 620 1.248101 CCGGCCCATTTCCGTCTTTT 61.248 55.000 0.00 0.00 45.09 2.27
620 621 1.677633 CCGGCCCATTTCCGTCTTT 60.678 57.895 0.00 0.00 45.09 2.52
621 622 2.045340 CCGGCCCATTTCCGTCTT 60.045 61.111 0.00 0.00 45.09 3.01
622 623 4.796495 GCCGGCCCATTTCCGTCT 62.796 66.667 18.11 0.00 45.09 4.18
633 634 4.237207 GTAGCTACAGGGCCGGCC 62.237 72.222 38.57 38.57 0.00 6.13
634 635 4.237207 GGTAGCTACAGGGCCGGC 62.237 72.222 24.75 21.18 0.00 6.13
635 636 1.623542 AAAGGTAGCTACAGGGCCGG 61.624 60.000 24.75 0.79 0.00 6.13
636 637 0.179081 GAAAGGTAGCTACAGGGCCG 60.179 60.000 24.75 0.00 0.00 6.13
637 638 1.134371 CAGAAAGGTAGCTACAGGGCC 60.134 57.143 24.75 7.70 0.00 5.80
638 639 1.134371 CCAGAAAGGTAGCTACAGGGC 60.134 57.143 24.75 11.31 0.00 5.19
639 640 1.134371 GCCAGAAAGGTAGCTACAGGG 60.134 57.143 24.75 15.75 40.61 4.45
640 641 1.471676 CGCCAGAAAGGTAGCTACAGG 60.472 57.143 24.75 15.71 40.61 4.00
641 642 1.476891 TCGCCAGAAAGGTAGCTACAG 59.523 52.381 24.75 7.32 40.61 2.74
642 643 1.476891 CTCGCCAGAAAGGTAGCTACA 59.523 52.381 24.75 0.00 40.61 2.74
643 644 1.202428 CCTCGCCAGAAAGGTAGCTAC 60.202 57.143 15.88 15.88 40.61 3.58
644 645 1.112113 CCTCGCCAGAAAGGTAGCTA 58.888 55.000 0.00 0.00 40.61 3.32
645 646 1.617947 CCCTCGCCAGAAAGGTAGCT 61.618 60.000 0.00 0.00 40.61 3.32
646 647 1.153349 CCCTCGCCAGAAAGGTAGC 60.153 63.158 0.00 0.00 40.61 3.58
647 648 0.613777 AACCCTCGCCAGAAAGGTAG 59.386 55.000 0.00 0.00 40.61 3.18
648 649 1.551883 GTAACCCTCGCCAGAAAGGTA 59.448 52.381 0.00 0.00 40.61 3.08
649 650 0.323957 GTAACCCTCGCCAGAAAGGT 59.676 55.000 0.00 0.00 40.61 3.50
650 651 0.392595 GGTAACCCTCGCCAGAAAGG 60.393 60.000 0.00 0.00 41.84 3.11
651 652 0.323629 TGGTAACCCTCGCCAGAAAG 59.676 55.000 0.00 0.00 0.00 2.62
652 653 0.035739 GTGGTAACCCTCGCCAGAAA 59.964 55.000 0.00 0.00 32.31 2.52
653 654 1.675219 GTGGTAACCCTCGCCAGAA 59.325 57.895 0.00 0.00 32.31 3.02
654 655 2.642254 CGTGGTAACCCTCGCCAGA 61.642 63.158 0.00 0.00 40.44 3.86
655 656 2.125673 CGTGGTAACCCTCGCCAG 60.126 66.667 0.00 0.00 40.44 4.85
672 673 4.338710 TACTGGGCCGGCCACAAC 62.339 66.667 44.46 28.47 37.98 3.32
673 674 4.028490 CTACTGGGCCGGCCACAA 62.028 66.667 44.46 28.48 37.98 3.33
676 677 4.401876 TACCTACTGGGCCGGCCA 62.402 66.667 44.46 29.19 39.10 5.36
677 678 3.858225 GTACCTACTGGGCCGGCC 61.858 72.222 38.57 38.57 39.10 6.13
678 679 3.858225 GGTACCTACTGGGCCGGC 61.858 72.222 21.18 21.18 39.10 6.13
688 689 6.857492 CGGTCCAGTATCGATGGGTACCTA 62.857 54.167 12.72 6.02 42.32 3.08
690 691 3.969265 CGGTCCAGTATCGATGGGTACC 61.969 59.091 8.54 2.17 42.19 3.34
691 692 1.268899 CGGTCCAGTATCGATGGGTAC 59.731 57.143 8.54 0.00 38.44 3.34
692 693 1.143481 TCGGTCCAGTATCGATGGGTA 59.857 52.381 8.54 0.00 35.26 3.69
693 694 0.106369 TCGGTCCAGTATCGATGGGT 60.106 55.000 8.54 0.00 35.26 4.51
694 695 0.314302 GTCGGTCCAGTATCGATGGG 59.686 60.000 8.54 7.20 44.00 4.00
695 696 1.319541 AGTCGGTCCAGTATCGATGG 58.680 55.000 8.54 2.09 44.00 3.51
696 697 4.768130 ATTAGTCGGTCCAGTATCGATG 57.232 45.455 8.54 0.00 44.00 3.84
697 698 4.217983 GGAATTAGTCGGTCCAGTATCGAT 59.782 45.833 2.16 2.16 44.00 3.59
698 699 3.567164 GGAATTAGTCGGTCCAGTATCGA 59.433 47.826 0.00 0.00 38.76 3.59
699 700 3.305199 GGGAATTAGTCGGTCCAGTATCG 60.305 52.174 0.00 0.00 32.70 2.92
700 701 3.640029 TGGGAATTAGTCGGTCCAGTATC 59.360 47.826 0.00 0.00 32.70 2.24
701 702 3.387050 GTGGGAATTAGTCGGTCCAGTAT 59.613 47.826 0.00 0.00 32.70 2.12
702 703 2.762327 GTGGGAATTAGTCGGTCCAGTA 59.238 50.000 0.00 0.00 32.70 2.74
703 704 1.553704 GTGGGAATTAGTCGGTCCAGT 59.446 52.381 0.00 0.00 32.70 4.00
704 705 1.470979 CGTGGGAATTAGTCGGTCCAG 60.471 57.143 0.00 0.00 32.70 3.86
705 706 0.533491 CGTGGGAATTAGTCGGTCCA 59.467 55.000 0.00 0.00 32.70 4.02
706 707 0.533951 ACGTGGGAATTAGTCGGTCC 59.466 55.000 0.00 0.00 0.00 4.46
707 708 1.067354 ACACGTGGGAATTAGTCGGTC 60.067 52.381 21.57 0.00 0.00 4.79
708 709 0.971386 ACACGTGGGAATTAGTCGGT 59.029 50.000 21.57 0.00 0.00 4.69
709 710 2.088950 AACACGTGGGAATTAGTCGG 57.911 50.000 21.57 0.00 0.00 4.79
710 711 3.323243 AGAAACACGTGGGAATTAGTCG 58.677 45.455 21.57 0.00 0.00 4.18
711 712 6.790285 TTTAGAAACACGTGGGAATTAGTC 57.210 37.500 21.57 4.91 0.00 2.59
712 713 7.571080 TTTTTAGAAACACGTGGGAATTAGT 57.429 32.000 21.57 3.47 0.00 2.24
735 736 5.134661 TCCAACGTGGGAATTAGTCTTTTT 58.865 37.500 9.97 0.00 38.32 1.94
736 737 4.721132 TCCAACGTGGGAATTAGTCTTTT 58.279 39.130 9.97 0.00 38.32 2.27
737 738 4.202430 ACTCCAACGTGGGAATTAGTCTTT 60.202 41.667 14.00 0.00 38.32 2.52
738 739 3.326880 ACTCCAACGTGGGAATTAGTCTT 59.673 43.478 14.00 0.00 38.32 3.01
739 740 2.904434 ACTCCAACGTGGGAATTAGTCT 59.096 45.455 14.00 0.00 38.32 3.24
740 741 3.329929 ACTCCAACGTGGGAATTAGTC 57.670 47.619 14.00 0.00 38.32 2.59
741 742 3.836562 AGTACTCCAACGTGGGAATTAGT 59.163 43.478 14.00 9.91 38.32 2.24
742 743 4.181578 CAGTACTCCAACGTGGGAATTAG 58.818 47.826 14.00 3.59 38.32 1.73
743 744 3.579586 ACAGTACTCCAACGTGGGAATTA 59.420 43.478 14.00 4.48 38.32 1.40
744 745 2.370849 ACAGTACTCCAACGTGGGAATT 59.629 45.455 14.00 5.54 38.32 2.17
745 746 1.975680 ACAGTACTCCAACGTGGGAAT 59.024 47.619 14.00 5.45 38.32 3.01
746 747 1.416243 ACAGTACTCCAACGTGGGAA 58.584 50.000 14.00 0.00 38.32 3.97
747 748 1.416243 AACAGTACTCCAACGTGGGA 58.584 50.000 12.21 12.21 38.32 4.37
748 749 2.249844 AAACAGTACTCCAACGTGGG 57.750 50.000 1.09 1.09 38.32 4.61
883 884 0.881118 GTTTCTTGAAGCCGCATCCA 59.119 50.000 0.00 0.00 0.00 3.41
884 885 0.881118 TGTTTCTTGAAGCCGCATCC 59.119 50.000 0.00 0.00 0.00 3.51
887 888 0.179032 TCCTGTTTCTTGAAGCCGCA 60.179 50.000 0.00 0.00 0.00 5.69
896 897 4.079730 GGGGATTGACCTATCCTGTTTCTT 60.080 45.833 9.64 0.00 43.08 2.52
928 929 0.179084 GCAGGCTGCGTTATGTAGGA 60.179 55.000 25.47 0.00 31.71 2.94
929 930 2.311294 GCAGGCTGCGTTATGTAGG 58.689 57.895 25.47 0.00 31.71 3.18
1018 1033 2.888863 GAGTCGAGGTGCTGGAGG 59.111 66.667 0.00 0.00 0.00 4.30
1170 1200 4.227134 CCGTCGCCTCCTCCATGG 62.227 72.222 4.97 4.97 37.10 3.66
1171 1201 1.464376 ATACCGTCGCCTCCTCCATG 61.464 60.000 0.00 0.00 0.00 3.66
1172 1202 1.152525 ATACCGTCGCCTCCTCCAT 60.153 57.895 0.00 0.00 0.00 3.41
1173 1203 2.125326 CATACCGTCGCCTCCTCCA 61.125 63.158 0.00 0.00 0.00 3.86
1310 1346 2.264794 GGTGGCACTGGTAGACGG 59.735 66.667 18.45 0.00 0.00 4.79
1386 1422 2.371179 AGGTGCAAGATGATCCATCGAT 59.629 45.455 0.00 0.00 44.67 3.59
1387 1423 1.764723 AGGTGCAAGATGATCCATCGA 59.235 47.619 0.00 0.00 44.67 3.59
1401 1437 2.886523 CAAGAACCATCAAGAAGGTGCA 59.113 45.455 5.34 0.00 38.37 4.57
1802 1845 1.797025 GGAGGAGAAAACTCACCGTG 58.203 55.000 0.00 0.00 36.70 4.94
1817 1860 2.472695 TGTGGTTTGAATCTCGGAGG 57.527 50.000 4.96 0.00 0.00 4.30
1821 1864 3.682858 ACGGTAATGTGGTTTGAATCTCG 59.317 43.478 0.00 0.00 0.00 4.04
1859 1903 9.705290 ACTTTTAGCAAACAAGAAAGAAAGAAA 57.295 25.926 0.00 0.00 32.97 2.52
1865 1909 9.445786 CGAATTACTTTTAGCAAACAAGAAAGA 57.554 29.630 0.00 0.00 32.97 2.52
1893 3423 9.322773 TGTTGATAATCTAGAAATCAGCTTGAG 57.677 33.333 23.55 0.00 33.52 3.02
1915 3446 1.797964 GCGAACGGAATCGATTGTTG 58.202 50.000 16.96 7.32 45.48 3.33
1928 3459 1.390123 CATATCTATTGCCCGCGAACG 59.610 52.381 8.23 0.00 39.67 3.95
1969 3500 2.415512 GACGAACCCTAGCAACATGTTC 59.584 50.000 8.48 4.08 33.66 3.18
1982 3517 4.448732 ACGTGTTTAATAGTTGACGAACCC 59.551 41.667 0.00 0.00 31.81 4.11
2092 3702 1.640917 ACACACCACGGACTAATCCT 58.359 50.000 0.00 0.00 43.73 3.24
2120 3730 7.444487 GTGTCTACAAAGTCATAAAAACCCTCT 59.556 37.037 0.00 0.00 0.00 3.69
2313 3924 8.360390 GGAGACCATGTTTAAATCAAGAAGTTT 58.640 33.333 0.00 0.00 0.00 2.66
2468 4080 0.874390 TTGTCTCCTGCGATTTGTGC 59.126 50.000 0.00 0.00 0.00 4.57
2512 4143 7.719778 CAAGACATGCATGCTACTAGATTTA 57.280 36.000 26.53 0.00 0.00 1.40
2513 4144 6.615264 CAAGACATGCATGCTACTAGATTT 57.385 37.500 26.53 2.47 0.00 2.17
2558 4214 1.533753 TAAACCCCGTCCTCACCGT 60.534 57.895 0.00 0.00 0.00 4.83
2592 4248 3.433306 TCATGAAAACCCTCGGTGAAT 57.567 42.857 0.00 0.00 35.34 2.57
2614 4270 3.764237 AACCTTGGTCGTGTCTACAAT 57.236 42.857 0.00 0.00 0.00 2.71
2656 4312 8.647796 TCGACTATATTGAGGGTCACATAATTT 58.352 33.333 0.00 0.00 0.00 1.82
2657 4313 8.190326 TCGACTATATTGAGGGTCACATAATT 57.810 34.615 0.00 0.00 0.00 1.40
2659 4315 7.591421 TTCGACTATATTGAGGGTCACATAA 57.409 36.000 0.00 0.00 0.00 1.90
2660 4316 7.776618 ATTCGACTATATTGAGGGTCACATA 57.223 36.000 0.00 0.00 0.00 2.29
2661 4317 6.672266 ATTCGACTATATTGAGGGTCACAT 57.328 37.500 0.00 0.00 0.00 3.21
2662 4318 6.479972 AATTCGACTATATTGAGGGTCACA 57.520 37.500 0.00 0.00 0.00 3.58
2800 4672 3.616219 TGCGGGCAGTCTACATTTTTAT 58.384 40.909 0.00 0.00 0.00 1.40
2801 4673 3.060736 TGCGGGCAGTCTACATTTTTA 57.939 42.857 0.00 0.00 0.00 1.52
2828 4706 8.540388 ACCTAAATCAAGAAGCTATGTCTACAA 58.460 33.333 0.00 0.00 0.00 2.41
2837 4715 9.396022 CTATTGGAAACCTAAATCAAGAAGCTA 57.604 33.333 0.00 0.00 0.00 3.32
2839 4717 8.184848 GTCTATTGGAAACCTAAATCAAGAAGC 58.815 37.037 0.00 0.00 0.00 3.86
2905 4788 9.851686 AAATAGCATCATTAGATCTAAACCACA 57.148 29.630 18.79 2.57 30.20 4.17
2914 4802 8.712363 TGCGAAGTAAAATAGCATCATTAGATC 58.288 33.333 0.00 0.00 32.43 2.75
2971 4860 8.746052 TGAGATTTAATATGTGAAATTCCCGT 57.254 30.769 0.00 0.00 0.00 5.28
3047 4950 7.393796 TCCCGCAAAAATATACCAAGACTTTAA 59.606 33.333 0.00 0.00 0.00 1.52
3049 4952 5.712917 TCCCGCAAAAATATACCAAGACTTT 59.287 36.000 0.00 0.00 0.00 2.66
3182 5090 6.716628 TCTTAATATGGCCTGCCTATTTCAAG 59.283 38.462 9.97 11.11 36.94 3.02
3223 5131 6.625873 AGGCTTGAAGAAAAGTGTTCTAAG 57.374 37.500 0.00 0.00 0.00 2.18
3379 5290 5.981315 CGGGTAAATCTTGTACATCACGTAT 59.019 40.000 0.00 0.00 31.20 3.06
3465 5376 3.733960 CGTCGTCGCTCTCCACCA 61.734 66.667 0.00 0.00 0.00 4.17
3514 5440 2.125512 CCCGCCTGTTTCTCCGAG 60.126 66.667 0.00 0.00 0.00 4.63
3618 5544 3.869272 GAGCTTGCATGCCGTCGG 61.869 66.667 19.99 6.99 0.00 4.79
3637 5605 3.557054 CGTGGTATTCCATCATCCCGAAT 60.557 47.826 0.00 0.00 46.20 3.34
3647 5615 3.008375 CCTGATCCATCGTGGTATTCCAT 59.992 47.826 0.00 0.00 46.20 3.41
3656 5624 1.890979 GCTGCCCTGATCCATCGTG 60.891 63.158 0.00 0.00 0.00 4.35
3787 5794 1.662446 CTGACCGTTGTACGCCGTT 60.662 57.895 0.00 0.00 40.91 4.44
3788 5795 1.870055 ATCTGACCGTTGTACGCCGT 61.870 55.000 0.00 0.00 40.91 5.68
3802 5812 3.647649 CTGCGTCACCGGCATCTGA 62.648 63.158 0.00 0.00 40.09 3.27
3848 5858 1.705337 GGTTGCCGTGTCATCATCGG 61.705 60.000 0.00 0.00 45.94 4.18
4118 6191 1.400846 CTGCTTCTGGTGCATCATGAC 59.599 52.381 0.00 0.00 39.86 3.06
4128 6201 0.957395 CGTCCATTGCTGCTTCTGGT 60.957 55.000 0.00 0.00 0.00 4.00
4133 6206 1.660560 GCCATCGTCCATTGCTGCTT 61.661 55.000 0.00 0.00 0.00 3.91
4173 6252 3.048941 GAGCCGCCGAAGTACGTCT 62.049 63.158 7.22 0.00 40.78 4.18
4174 6253 2.578981 GAGCCGCCGAAGTACGTC 60.579 66.667 0.00 0.00 40.78 4.34
4175 6254 4.125695 GGAGCCGCCGAAGTACGT 62.126 66.667 0.00 0.00 40.78 3.57
4221 6300 1.301293 GAGAACTGAGGGGCCTTGG 59.699 63.158 0.84 0.00 0.00 3.61
4490 6572 1.978617 CACTGGGCCCAACCATGTC 60.979 63.158 28.29 0.00 40.36 3.06
4503 6585 1.667724 GAATTGAGCACCGATCACTGG 59.332 52.381 0.00 0.00 0.00 4.00
4537 6619 3.053896 CGCAAACCCTCCCGTTCC 61.054 66.667 0.00 0.00 0.00 3.62
4568 6655 2.625737 CAGATTTCAGCACCGATCACT 58.374 47.619 0.00 0.00 0.00 3.41
4595 6682 2.743636 AACGAACACACGATCTCCAT 57.256 45.000 0.00 0.00 37.03 3.41
4596 6683 2.352030 GGTAACGAACACACGATCTCCA 60.352 50.000 0.00 0.00 37.03 3.86
4616 6703 1.260561 CAGTTTCGACCAAGAACACGG 59.739 52.381 0.22 0.00 0.00 4.94
4658 6745 7.820648 ACTTAACAATGAAAGACTGGCATAAG 58.179 34.615 7.00 0.00 0.00 1.73
4681 6768 9.326413 CAAATATTTAAGAACGGATGGAGTACT 57.674 33.333 0.00 0.00 0.00 2.73
4682 6769 9.106070 ACAAATATTTAAGAACGGATGGAGTAC 57.894 33.333 0.00 0.00 0.00 2.73
4683 6770 9.675464 AACAAATATTTAAGAACGGATGGAGTA 57.325 29.630 0.00 0.00 0.00 2.59
4684 6771 8.575649 AACAAATATTTAAGAACGGATGGAGT 57.424 30.769 0.00 0.00 0.00 3.85
4685 6772 9.855021 AAAACAAATATTTAAGAACGGATGGAG 57.145 29.630 0.00 0.00 0.00 3.86
4759 6846 9.624697 GCAAAATGAGTGAATCTACATTGTAAA 57.375 29.630 0.00 0.00 34.02 2.01
4760 6847 9.013229 AGCAAAATGAGTGAATCTACATTGTAA 57.987 29.630 0.00 0.00 34.02 2.41
4761 6848 8.565896 AGCAAAATGAGTGAATCTACATTGTA 57.434 30.769 0.00 0.00 34.02 2.41
4762 6849 7.362401 GGAGCAAAATGAGTGAATCTACATTGT 60.362 37.037 0.00 0.00 34.02 2.71
4763 6850 6.971184 GGAGCAAAATGAGTGAATCTACATTG 59.029 38.462 0.00 0.00 34.02 2.82
4764 6851 6.183360 CGGAGCAAAATGAGTGAATCTACATT 60.183 38.462 0.00 0.00 34.99 2.71
4765 6852 5.295292 CGGAGCAAAATGAGTGAATCTACAT 59.705 40.000 0.00 0.00 0.00 2.29
4766 6853 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4767 6854 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4768 6855 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4769 6856 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4770 6857 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4771 6858 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4772 6859 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4773 6860 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4774 6861 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4775 6862 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4776 6863 6.757010 AGTAACTACATACGGAGCAAAATGAG 59.243 38.462 0.00 0.00 0.00 2.90
4777 6864 6.636705 AGTAACTACATACGGAGCAAAATGA 58.363 36.000 0.00 0.00 0.00 2.57
4778 6865 6.903883 AGTAACTACATACGGAGCAAAATG 57.096 37.500 0.00 0.00 0.00 2.32
4779 6866 6.877322 ACAAGTAACTACATACGGAGCAAAAT 59.123 34.615 0.00 0.00 0.00 1.82
4780 6867 6.225318 ACAAGTAACTACATACGGAGCAAAA 58.775 36.000 0.00 0.00 0.00 2.44
4781 6868 5.786311 ACAAGTAACTACATACGGAGCAAA 58.214 37.500 0.00 0.00 0.00 3.68
4782 6869 5.395682 ACAAGTAACTACATACGGAGCAA 57.604 39.130 0.00 0.00 0.00 3.91
4783 6870 5.047872 TCAACAAGTAACTACATACGGAGCA 60.048 40.000 0.00 0.00 0.00 4.26
4784 6871 5.404946 TCAACAAGTAACTACATACGGAGC 58.595 41.667 0.00 0.00 0.00 4.70
4785 6872 7.878477 TTTCAACAAGTAACTACATACGGAG 57.122 36.000 0.00 0.00 0.00 4.63
4786 6873 7.148540 GCATTTCAACAAGTAACTACATACGGA 60.149 37.037 0.00 0.00 0.00 4.69
4787 6874 6.959311 GCATTTCAACAAGTAACTACATACGG 59.041 38.462 0.00 0.00 0.00 4.02
4788 6875 6.959311 GGCATTTCAACAAGTAACTACATACG 59.041 38.462 0.00 0.00 0.00 3.06
4789 6876 8.040716 AGGCATTTCAACAAGTAACTACATAC 57.959 34.615 0.00 0.00 0.00 2.39
4790 6877 9.378551 CTAGGCATTTCAACAAGTAACTACATA 57.621 33.333 0.00 0.00 0.00 2.29
4791 6878 8.100791 TCTAGGCATTTCAACAAGTAACTACAT 58.899 33.333 0.00 0.00 0.00 2.29
4792 6879 7.446769 TCTAGGCATTTCAACAAGTAACTACA 58.553 34.615 0.00 0.00 0.00 2.74
4793 6880 7.900782 TCTAGGCATTTCAACAAGTAACTAC 57.099 36.000 0.00 0.00 0.00 2.73
4794 6881 8.911918 TTTCTAGGCATTTCAACAAGTAACTA 57.088 30.769 0.00 0.00 0.00 2.24
4795 6882 7.817418 TTTCTAGGCATTTCAACAAGTAACT 57.183 32.000 0.00 0.00 0.00 2.24
4796 6883 8.752254 GTTTTTCTAGGCATTTCAACAAGTAAC 58.248 33.333 0.00 0.00 0.00 2.50
4797 6884 8.470805 TGTTTTTCTAGGCATTTCAACAAGTAA 58.529 29.630 0.00 0.00 0.00 2.24
4798 6885 8.001881 TGTTTTTCTAGGCATTTCAACAAGTA 57.998 30.769 0.00 0.00 0.00 2.24
4799 6886 6.872920 TGTTTTTCTAGGCATTTCAACAAGT 58.127 32.000 0.00 0.00 0.00 3.16
4800 6887 7.769272 TTGTTTTTCTAGGCATTTCAACAAG 57.231 32.000 0.00 0.00 31.15 3.16
4801 6888 7.327214 ACTTGTTTTTCTAGGCATTTCAACAA 58.673 30.769 0.00 0.00 33.18 2.83
4802 6889 6.872920 ACTTGTTTTTCTAGGCATTTCAACA 58.127 32.000 0.00 0.00 0.00 3.33
4803 6890 9.476202 AATACTTGTTTTTCTAGGCATTTCAAC 57.524 29.630 0.00 0.00 0.00 3.18
4808 6895 9.528489 TCCTAAATACTTGTTTTTCTAGGCATT 57.472 29.630 0.00 0.00 0.00 3.56
4809 6896 9.528489 TTCCTAAATACTTGTTTTTCTAGGCAT 57.472 29.630 0.00 0.00 0.00 4.40
4810 6897 8.789762 GTTCCTAAATACTTGTTTTTCTAGGCA 58.210 33.333 0.00 0.00 0.00 4.75
4811 6898 8.789762 TGTTCCTAAATACTTGTTTTTCTAGGC 58.210 33.333 0.00 0.00 0.00 3.93
4815 6902 9.067986 CCTCTGTTCCTAAATACTTGTTTTTCT 57.932 33.333 0.00 0.00 0.00 2.52
4816 6903 8.297426 CCCTCTGTTCCTAAATACTTGTTTTTC 58.703 37.037 0.00 0.00 0.00 2.29
4817 6904 8.002459 TCCCTCTGTTCCTAAATACTTGTTTTT 58.998 33.333 0.00 0.00 0.00 1.94
4818 6905 7.523415 TCCCTCTGTTCCTAAATACTTGTTTT 58.477 34.615 0.00 0.00 0.00 2.43
4819 6906 7.086685 TCCCTCTGTTCCTAAATACTTGTTT 57.913 36.000 0.00 0.00 0.00 2.83
4820 6907 6.272558 ACTCCCTCTGTTCCTAAATACTTGTT 59.727 38.462 0.00 0.00 0.00 2.83
4821 6908 5.785940 ACTCCCTCTGTTCCTAAATACTTGT 59.214 40.000 0.00 0.00 0.00 3.16
4822 6909 6.301169 ACTCCCTCTGTTCCTAAATACTTG 57.699 41.667 0.00 0.00 0.00 3.16
4823 6910 7.190501 ACTACTCCCTCTGTTCCTAAATACTT 58.809 38.462 0.00 0.00 0.00 2.24
4824 6911 6.743788 ACTACTCCCTCTGTTCCTAAATACT 58.256 40.000 0.00 0.00 0.00 2.12
4825 6912 7.093421 ACAACTACTCCCTCTGTTCCTAAATAC 60.093 40.741 0.00 0.00 0.00 1.89
4826 6913 6.958192 ACAACTACTCCCTCTGTTCCTAAATA 59.042 38.462 0.00 0.00 0.00 1.40
4827 6914 5.785940 ACAACTACTCCCTCTGTTCCTAAAT 59.214 40.000 0.00 0.00 0.00 1.40
4828 6915 5.152934 ACAACTACTCCCTCTGTTCCTAAA 58.847 41.667 0.00 0.00 0.00 1.85
4829 6916 4.748701 ACAACTACTCCCTCTGTTCCTAA 58.251 43.478 0.00 0.00 0.00 2.69
4830 6917 4.399483 ACAACTACTCCCTCTGTTCCTA 57.601 45.455 0.00 0.00 0.00 2.94
4831 6918 3.261818 ACAACTACTCCCTCTGTTCCT 57.738 47.619 0.00 0.00 0.00 3.36
4832 6919 4.621038 GCTTACAACTACTCCCTCTGTTCC 60.621 50.000 0.00 0.00 0.00 3.62
4833 6920 4.221041 AGCTTACAACTACTCCCTCTGTTC 59.779 45.833 0.00 0.00 0.00 3.18
4834 6921 4.021016 CAGCTTACAACTACTCCCTCTGTT 60.021 45.833 0.00 0.00 0.00 3.16
4835 6922 3.511934 CAGCTTACAACTACTCCCTCTGT 59.488 47.826 0.00 0.00 0.00 3.41
4836 6923 3.764434 TCAGCTTACAACTACTCCCTCTG 59.236 47.826 0.00 0.00 0.00 3.35
4837 6924 4.048970 TCAGCTTACAACTACTCCCTCT 57.951 45.455 0.00 0.00 0.00 3.69
4838 6925 4.803098 TTCAGCTTACAACTACTCCCTC 57.197 45.455 0.00 0.00 0.00 4.30
4839 6926 4.593634 AGTTTCAGCTTACAACTACTCCCT 59.406 41.667 0.91 0.00 0.00 4.20
4840 6927 4.895961 AGTTTCAGCTTACAACTACTCCC 58.104 43.478 0.91 0.00 0.00 4.30
4841 6928 6.224584 AGAAGTTTCAGCTTACAACTACTCC 58.775 40.000 3.01 0.00 30.37 3.85
4842 6929 7.307455 CCAAGAAGTTTCAGCTTACAACTACTC 60.307 40.741 3.01 0.00 30.37 2.59
4843 6930 6.483640 CCAAGAAGTTTCAGCTTACAACTACT 59.516 38.462 3.01 0.00 30.37 2.57
4844 6931 6.260271 ACCAAGAAGTTTCAGCTTACAACTAC 59.740 38.462 3.01 0.00 30.37 2.73
4845 6932 6.354130 ACCAAGAAGTTTCAGCTTACAACTA 58.646 36.000 3.01 0.00 30.37 2.24
4846 6933 5.193679 ACCAAGAAGTTTCAGCTTACAACT 58.806 37.500 0.00 0.00 31.90 3.16
4863 6950 2.820787 GGAGTCGAGAAAGAGACCAAGA 59.179 50.000 0.00 0.00 38.08 3.02
4890 6977 7.916977 CCATCGATCAACAATCAAACATATGTT 59.083 33.333 15.47 15.47 40.50 2.71
4939 7026 3.701040 ACCACAGAAGCACAGATGTTTTT 59.299 39.130 0.00 0.00 27.98 1.94
4944 7031 3.144506 AGAAACCACAGAAGCACAGATG 58.855 45.455 0.00 0.00 0.00 2.90
4969 7056 7.879070 TGTCAATCAATCAAGAAGGAAAGAAG 58.121 34.615 0.00 0.00 0.00 2.85
5012 7099 6.112734 ACAATTAAATCGTGCCTGAGTCATA 58.887 36.000 0.00 0.00 0.00 2.15
5020 7107 5.659440 AATCCAACAATTAAATCGTGCCT 57.341 34.783 0.00 0.00 0.00 4.75
5023 7110 7.650834 AACCAAATCCAACAATTAAATCGTG 57.349 32.000 0.00 0.00 0.00 4.35
5036 7123 2.362717 GACCGAACCAAACCAAATCCAA 59.637 45.455 0.00 0.00 0.00 3.53
5038 7125 2.228103 GAGACCGAACCAAACCAAATCC 59.772 50.000 0.00 0.00 0.00 3.01
5053 7140 4.820284 AAAAGAAGAAGCAAAGAGACCG 57.180 40.909 0.00 0.00 0.00 4.79
5063 7150 9.683069 TTCTGAACATTGATAAAAAGAAGAAGC 57.317 29.630 0.00 0.00 0.00 3.86
5065 7152 9.683069 GCTTCTGAACATTGATAAAAAGAAGAA 57.317 29.630 12.06 0.00 41.08 2.52
5071 7158 9.985730 ATCTTTGCTTCTGAACATTGATAAAAA 57.014 25.926 0.00 0.00 0.00 1.94
5076 7163 5.105473 CCCATCTTTGCTTCTGAACATTGAT 60.105 40.000 0.00 0.00 0.00 2.57
5098 7185 0.105778 CTGAAGAATCCGAGCTCCCC 59.894 60.000 8.47 0.00 0.00 4.81
5107 7194 2.817423 CGCGCTGGCTGAAGAATCC 61.817 63.158 5.56 0.00 36.88 3.01
5121 7208 2.202479 GGACAAATCTTGCCGCGC 60.202 61.111 0.00 0.00 0.00 6.86
5143 7230 3.681593 TTGGGCCATGAAAATTGTCAG 57.318 42.857 7.26 0.00 0.00 3.51
5164 7251 4.512944 GCGGCTCAAATCAGATGAGATTAA 59.487 41.667 7.67 0.00 45.74 1.40
5165 7252 4.060900 GCGGCTCAAATCAGATGAGATTA 58.939 43.478 7.67 0.00 45.74 1.75
5166 7253 2.877168 GCGGCTCAAATCAGATGAGATT 59.123 45.455 7.67 0.00 45.74 2.40
5167 7254 2.104451 AGCGGCTCAAATCAGATGAGAT 59.896 45.455 7.67 0.00 45.74 2.75
5173 7260 1.003476 TGCAGCGGCTCAAATCAGA 60.003 52.632 10.92 0.00 41.91 3.27
5179 7266 4.933563 TGCACTGCAGCGGCTCAA 62.934 61.111 25.60 8.51 41.91 3.02
5203 7290 0.471617 CCTGAATCTTGGCCTCCGAT 59.528 55.000 3.32 0.00 0.00 4.18
5208 7297 2.893489 GTTTTGACCTGAATCTTGGCCT 59.107 45.455 3.32 0.00 0.00 5.19
5209 7298 2.351738 CGTTTTGACCTGAATCTTGGCC 60.352 50.000 0.00 0.00 0.00 5.36
5210 7299 2.922335 GCGTTTTGACCTGAATCTTGGC 60.922 50.000 0.00 0.00 0.00 4.52
5211 7300 2.554032 AGCGTTTTGACCTGAATCTTGG 59.446 45.455 0.00 0.00 0.00 3.61
5212 7301 3.250762 TCAGCGTTTTGACCTGAATCTTG 59.749 43.478 0.00 0.00 33.05 3.02
5214 7303 2.808543 GTCAGCGTTTTGACCTGAATCT 59.191 45.455 5.81 0.00 41.24 2.40
5215 7304 3.188895 GTCAGCGTTTTGACCTGAATC 57.811 47.619 5.81 0.00 41.24 2.52
5245 7334 4.686191 AAACAAATGATGGGCAAAGTCA 57.314 36.364 0.00 0.00 0.00 3.41
5423 7543 0.933796 GAAAGCCGCATCACTAGCTC 59.066 55.000 0.00 0.00 33.56 4.09
5426 7546 1.134699 TCCTGAAAGCCGCATCACTAG 60.135 52.381 0.00 0.00 0.00 2.57
5427 7547 0.901827 TCCTGAAAGCCGCATCACTA 59.098 50.000 0.00 0.00 0.00 2.74
5429 7549 1.098050 ATTCCTGAAAGCCGCATCAC 58.902 50.000 0.00 0.00 0.00 3.06
5430 7550 1.838112 AATTCCTGAAAGCCGCATCA 58.162 45.000 0.00 0.00 0.00 3.07
5431 7551 2.286418 CGTAATTCCTGAAAGCCGCATC 60.286 50.000 0.00 0.00 0.00 3.91
5433 7553 1.083489 CGTAATTCCTGAAAGCCGCA 58.917 50.000 0.00 0.00 0.00 5.69
5435 7555 5.064198 TGAATTACGTAATTCCTGAAAGCCG 59.936 40.000 38.76 0.00 46.80 5.52
5451 7572 3.634568 TGGCAAACCTTGTGAATTACG 57.365 42.857 0.00 0.00 36.63 3.18
5482 7841 5.650283 TGGGTTGAATGGTAAGAATTTCCT 58.350 37.500 0.00 0.00 36.37 3.36
5483 7842 5.105351 CCTGGGTTGAATGGTAAGAATTTCC 60.105 44.000 0.00 0.00 35.89 3.13
5485 7844 5.402630 ACCTGGGTTGAATGGTAAGAATTT 58.597 37.500 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.