Multiple sequence alignment - TraesCS6A01G298000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G298000 chr6A 100.000 2222 0 0 1 2222 531392489 531390268 0.000000e+00 4104
1 TraesCS6A01G298000 chr6A 96.528 432 15 0 1539 1970 531391380 531390949 0.000000e+00 715
2 TraesCS6A01G298000 chr2A 98.475 1967 26 2 1 1967 48258089 48260051 0.000000e+00 3463
3 TraesCS6A01G298000 chr2A 96.612 1948 60 3 1 1948 765851481 765849540 0.000000e+00 3227
4 TraesCS6A01G298000 chr2A 96.970 429 12 1 1539 1967 38299912 38300339 0.000000e+00 719
5 TraesCS6A01G298000 chr2A 96.313 434 16 0 1539 1972 442716756 442716323 0.000000e+00 713
6 TraesCS6A01G298000 chr3A 97.713 1968 45 0 1 1968 684743940 684745907 0.000000e+00 3386
7 TraesCS6A01G298000 chr3A 95.779 1540 64 1 1 1540 459623246 459621708 0.000000e+00 2483
8 TraesCS6A01G298000 chr3A 95.599 1545 64 3 1 1541 11599033 11597489 0.000000e+00 2473
9 TraesCS6A01G298000 chr3A 95.599 1545 64 3 1 1541 11605921 11604377 0.000000e+00 2473
10 TraesCS6A01G298000 chr3A 94.937 79 1 2 1957 2032 684745401 684745479 1.080000e-23 121
11 TraesCS6A01G298000 chr3A 75.697 251 40 14 1792 2025 714081516 714081762 3.020000e-19 106
12 TraesCS6A01G298000 chr4B 97.611 1967 47 0 1 1967 604142984 604144950 0.000000e+00 3373
13 TraesCS6A01G298000 chr4B 95.776 1539 64 1 1 1539 85985496 85987033 0.000000e+00 2481
14 TraesCS6A01G298000 chr4B 96.991 432 13 0 1539 1970 604144093 604144524 0.000000e+00 726
15 TraesCS6A01G298000 chr5A 95.457 1541 66 3 1 1539 601068901 601070439 0.000000e+00 2455
16 TraesCS6A01G298000 chr3B 96.536 433 15 0 1537 1969 572677095 572677527 0.000000e+00 717
17 TraesCS6A01G298000 chr6B 86.184 152 12 4 2038 2185 577183460 577183314 2.950000e-34 156
18 TraesCS6A01G298000 chr6B 98.507 67 1 0 1968 2034 317211664 317211598 3.880000e-23 119
19 TraesCS6A01G298000 chr2B 100.000 64 0 0 1968 2031 554722820 554722757 3.880000e-23 119
20 TraesCS6A01G298000 chr2B 98.507 67 1 0 1968 2034 765492071 765492137 3.880000e-23 119
21 TraesCS6A01G298000 chr2B 98.485 66 1 0 1968 2033 573818001 573818066 1.390000e-22 117
22 TraesCS6A01G298000 chr2B 97.059 68 2 0 1968 2035 140780466 140780399 5.010000e-22 115
23 TraesCS6A01G298000 chr7A 98.485 66 1 0 1968 2033 16636650 16636585 1.390000e-22 117
24 TraesCS6A01G298000 chr1A 98.485 66 1 0 1968 2033 446245256 446245321 1.390000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G298000 chr6A 531390268 531392489 2221 True 2409.5 4104 98.264 1 2222 2 chr6A.!!$R1 2221
1 TraesCS6A01G298000 chr2A 48258089 48260051 1962 False 3463.0 3463 98.475 1 1967 1 chr2A.!!$F2 1966
2 TraesCS6A01G298000 chr2A 765849540 765851481 1941 True 3227.0 3227 96.612 1 1948 1 chr2A.!!$R2 1947
3 TraesCS6A01G298000 chr3A 459621708 459623246 1538 True 2483.0 2483 95.779 1 1540 1 chr3A.!!$R3 1539
4 TraesCS6A01G298000 chr3A 11597489 11599033 1544 True 2473.0 2473 95.599 1 1541 1 chr3A.!!$R1 1540
5 TraesCS6A01G298000 chr3A 11604377 11605921 1544 True 2473.0 2473 95.599 1 1541 1 chr3A.!!$R2 1540
6 TraesCS6A01G298000 chr3A 684743940 684745907 1967 False 1753.5 3386 96.325 1 2032 2 chr3A.!!$F2 2031
7 TraesCS6A01G298000 chr4B 85985496 85987033 1537 False 2481.0 2481 95.776 1 1539 1 chr4B.!!$F1 1538
8 TraesCS6A01G298000 chr4B 604142984 604144950 1966 False 2049.5 3373 97.301 1 1970 2 chr4B.!!$F2 1969
9 TraesCS6A01G298000 chr5A 601068901 601070439 1538 False 2455.0 2455 95.457 1 1539 1 chr5A.!!$F1 1538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 715 3.217681 ACGAAGTAAAGCCCAAGGAAA 57.782 42.857 0.0 0.0 41.94 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2141 3005 0.032267 GTCACATAGGGCCTAGCGAC 59.968 60.0 19.74 18.97 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 4.560035 GGATCATTCGAAACTGCACAAATG 59.440 41.667 0.00 0.00 0.00 2.32
497 500 5.723492 AGTAACGCGTGTAAAGTTTTCTT 57.277 34.783 14.98 0.00 42.58 2.52
712 715 3.217681 ACGAAGTAAAGCCCAAGGAAA 57.782 42.857 0.00 0.00 41.94 3.13
805 808 9.793259 TTGATCCTACTTTGTAAGACAAGATTT 57.207 29.630 0.00 0.00 39.53 2.17
860 864 4.754618 ACACATTTTCAGTACAGCAATCGA 59.245 37.500 0.00 0.00 0.00 3.59
1040 1044 1.995066 ATGCCCTGGACGTGGATGA 60.995 57.895 0.00 0.00 0.00 2.92
1355 2219 4.618227 GCAGGCGTGGAGTTTCATATTTTT 60.618 41.667 8.72 0.00 0.00 1.94
1928 2792 2.489275 CGCTTTGTGGGGTGTGCTT 61.489 57.895 0.00 0.00 0.00 3.91
1929 2793 1.169661 CGCTTTGTGGGGTGTGCTTA 61.170 55.000 0.00 0.00 0.00 3.09
1930 2794 1.036707 GCTTTGTGGGGTGTGCTTAA 58.963 50.000 0.00 0.00 0.00 1.85
1931 2795 1.410882 GCTTTGTGGGGTGTGCTTAAA 59.589 47.619 0.00 0.00 0.00 1.52
1932 2796 2.159028 GCTTTGTGGGGTGTGCTTAAAA 60.159 45.455 0.00 0.00 0.00 1.52
1933 2797 3.680196 GCTTTGTGGGGTGTGCTTAAAAA 60.680 43.478 0.00 0.00 0.00 1.94
1975 2839 9.327529 GTTCAATAGTAGTATAGATGTGTACGC 57.672 37.037 0.00 0.00 0.00 4.42
1976 2840 8.843885 TCAATAGTAGTATAGATGTGTACGCT 57.156 34.615 8.10 0.00 0.00 5.07
1977 2841 9.281371 TCAATAGTAGTATAGATGTGTACGCTT 57.719 33.333 8.10 0.59 0.00 4.68
1978 2842 9.894783 CAATAGTAGTATAGATGTGTACGCTTT 57.105 33.333 8.10 0.00 0.00 3.51
1979 2843 9.894783 AATAGTAGTATAGATGTGTACGCTTTG 57.105 33.333 8.10 0.00 0.00 2.77
1980 2844 7.330900 AGTAGTATAGATGTGTACGCTTTGT 57.669 36.000 8.10 0.00 0.00 2.83
1981 2845 7.194278 AGTAGTATAGATGTGTACGCTTTGTG 58.806 38.462 8.10 0.00 0.00 3.33
1982 2846 5.348986 AGTATAGATGTGTACGCTTTGTGG 58.651 41.667 8.10 0.00 0.00 4.17
1983 2847 1.808411 AGATGTGTACGCTTTGTGGG 58.192 50.000 8.10 0.00 0.00 4.61
1984 2848 0.802494 GATGTGTACGCTTTGTGGGG 59.198 55.000 8.10 0.00 0.00 4.96
1985 2849 0.109723 ATGTGTACGCTTTGTGGGGT 59.890 50.000 8.10 0.00 36.39 4.95
1986 2850 0.816018 TGTGTACGCTTTGTGGGGTG 60.816 55.000 8.10 0.00 34.32 4.61
1987 2851 0.816421 GTGTACGCTTTGTGGGGTGT 60.816 55.000 0.00 0.00 34.32 4.16
1988 2852 0.816018 TGTACGCTTTGTGGGGTGTG 60.816 55.000 0.00 0.00 34.32 3.82
1989 2853 1.894756 TACGCTTTGTGGGGTGTGC 60.895 57.895 0.00 0.00 34.32 4.57
1990 2854 2.332312 TACGCTTTGTGGGGTGTGCT 62.332 55.000 0.00 0.00 34.32 4.40
2040 2904 9.578576 TTAATAGTAGTATAGATGAACGGTGGT 57.421 33.333 0.00 0.00 0.00 4.16
2041 2905 5.769484 AGTAGTATAGATGAACGGTGGTG 57.231 43.478 0.00 0.00 0.00 4.17
2042 2906 5.198965 AGTAGTATAGATGAACGGTGGTGT 58.801 41.667 0.00 0.00 0.00 4.16
2043 2907 4.650754 AGTATAGATGAACGGTGGTGTC 57.349 45.455 0.00 0.00 0.00 3.67
2044 2908 2.981859 ATAGATGAACGGTGGTGTCC 57.018 50.000 0.00 0.00 0.00 4.02
2045 2909 0.899720 TAGATGAACGGTGGTGTCCC 59.100 55.000 0.00 0.00 0.00 4.46
2046 2910 1.376812 GATGAACGGTGGTGTCCCC 60.377 63.158 0.00 0.00 0.00 4.81
2047 2911 2.119484 GATGAACGGTGGTGTCCCCA 62.119 60.000 0.00 0.00 42.51 4.96
2062 2926 4.814294 CCACAGGGCCGCGACTAC 62.814 72.222 8.23 0.00 0.00 2.73
2063 2927 4.063967 CACAGGGCCGCGACTACA 62.064 66.667 8.23 0.00 0.00 2.74
2064 2928 3.760035 ACAGGGCCGCGACTACAG 61.760 66.667 8.23 0.00 0.00 2.74
2065 2929 4.514577 CAGGGCCGCGACTACAGG 62.515 72.222 8.23 0.00 0.00 4.00
2067 2931 4.814294 GGGCCGCGACTACAGGTG 62.814 72.222 8.23 0.00 0.00 4.00
2068 2932 4.065281 GGCCGCGACTACAGGTGT 62.065 66.667 8.23 0.00 0.00 4.16
2069 2933 2.809601 GCCGCGACTACAGGTGTG 60.810 66.667 8.23 0.00 0.00 3.82
2070 2934 2.126071 CCGCGACTACAGGTGTGG 60.126 66.667 8.23 0.00 0.00 4.17
2071 2935 2.632544 CCGCGACTACAGGTGTGGA 61.633 63.158 8.23 0.00 32.38 4.02
2072 2936 1.511305 CGCGACTACAGGTGTGGAT 59.489 57.895 0.00 0.00 0.00 3.41
2073 2937 0.802222 CGCGACTACAGGTGTGGATG 60.802 60.000 0.00 0.00 0.00 3.51
2074 2938 1.084370 GCGACTACAGGTGTGGATGC 61.084 60.000 0.00 0.39 0.00 3.91
2075 2939 0.246360 CGACTACAGGTGTGGATGCA 59.754 55.000 0.00 0.00 0.00 3.96
2076 2940 1.737029 CGACTACAGGTGTGGATGCAG 60.737 57.143 0.00 0.00 0.00 4.41
2077 2941 1.550524 GACTACAGGTGTGGATGCAGA 59.449 52.381 0.00 0.00 0.00 4.26
2078 2942 1.276421 ACTACAGGTGTGGATGCAGAC 59.724 52.381 5.89 5.89 0.00 3.51
2079 2943 1.552337 CTACAGGTGTGGATGCAGACT 59.448 52.381 14.13 0.00 0.00 3.24
2080 2944 0.767375 ACAGGTGTGGATGCAGACTT 59.233 50.000 14.13 3.70 0.00 3.01
2081 2945 1.162698 CAGGTGTGGATGCAGACTTG 58.837 55.000 14.13 12.92 0.00 3.16
2082 2946 0.767375 AGGTGTGGATGCAGACTTGT 59.233 50.000 14.13 0.00 0.00 3.16
2083 2947 0.877071 GGTGTGGATGCAGACTTGTG 59.123 55.000 14.13 0.00 0.00 3.33
2084 2948 1.543208 GGTGTGGATGCAGACTTGTGA 60.543 52.381 14.13 0.00 0.00 3.58
2085 2949 1.532868 GTGTGGATGCAGACTTGTGAC 59.467 52.381 7.28 0.00 0.00 3.67
2086 2950 1.417517 TGTGGATGCAGACTTGTGACT 59.582 47.619 0.00 0.00 0.00 3.41
2087 2951 2.072298 GTGGATGCAGACTTGTGACTC 58.928 52.381 0.00 0.00 0.00 3.36
2088 2952 1.002430 TGGATGCAGACTTGTGACTCC 59.998 52.381 0.00 0.00 0.00 3.85
2089 2953 1.677217 GGATGCAGACTTGTGACTCCC 60.677 57.143 0.00 0.00 0.00 4.30
2090 2954 0.326264 ATGCAGACTTGTGACTCCCC 59.674 55.000 0.00 0.00 0.00 4.81
2091 2955 0.764369 TGCAGACTTGTGACTCCCCT 60.764 55.000 0.00 0.00 0.00 4.79
2092 2956 0.036858 GCAGACTTGTGACTCCCCTC 60.037 60.000 0.00 0.00 0.00 4.30
2093 2957 1.342074 CAGACTTGTGACTCCCCTCA 58.658 55.000 0.00 0.00 0.00 3.86
2094 2958 1.001406 CAGACTTGTGACTCCCCTCAC 59.999 57.143 0.00 0.00 40.98 3.51
2095 2959 0.321996 GACTTGTGACTCCCCTCACC 59.678 60.000 0.00 0.00 40.02 4.02
2096 2960 1.128188 ACTTGTGACTCCCCTCACCC 61.128 60.000 0.00 0.00 40.02 4.61
2097 2961 0.838122 CTTGTGACTCCCCTCACCCT 60.838 60.000 0.00 0.00 40.02 4.34
2098 2962 0.401395 TTGTGACTCCCCTCACCCTT 60.401 55.000 0.00 0.00 40.02 3.95
2099 2963 0.490017 TGTGACTCCCCTCACCCTTA 59.510 55.000 0.00 0.00 40.02 2.69
2100 2964 1.080498 TGTGACTCCCCTCACCCTTAT 59.920 52.381 0.00 0.00 40.02 1.73
2101 2965 2.197465 GTGACTCCCCTCACCCTTATT 58.803 52.381 0.00 0.00 35.44 1.40
2102 2966 2.170817 GTGACTCCCCTCACCCTTATTC 59.829 54.545 0.00 0.00 35.44 1.75
2103 2967 1.769465 GACTCCCCTCACCCTTATTCC 59.231 57.143 0.00 0.00 0.00 3.01
2104 2968 1.369983 ACTCCCCTCACCCTTATTCCT 59.630 52.381 0.00 0.00 0.00 3.36
2105 2969 1.771255 CTCCCCTCACCCTTATTCCTG 59.229 57.143 0.00 0.00 0.00 3.86
2106 2970 1.368203 TCCCCTCACCCTTATTCCTGA 59.632 52.381 0.00 0.00 0.00 3.86
2107 2971 1.490910 CCCCTCACCCTTATTCCTGAC 59.509 57.143 0.00 0.00 0.00 3.51
2108 2972 1.490910 CCCTCACCCTTATTCCTGACC 59.509 57.143 0.00 0.00 0.00 4.02
2109 2973 1.139058 CCTCACCCTTATTCCTGACCG 59.861 57.143 0.00 0.00 0.00 4.79
2110 2974 1.831736 CTCACCCTTATTCCTGACCGT 59.168 52.381 0.00 0.00 0.00 4.83
2111 2975 2.236395 CTCACCCTTATTCCTGACCGTT 59.764 50.000 0.00 0.00 0.00 4.44
2112 2976 2.235402 TCACCCTTATTCCTGACCGTTC 59.765 50.000 0.00 0.00 0.00 3.95
2113 2977 1.206371 ACCCTTATTCCTGACCGTTCG 59.794 52.381 0.00 0.00 0.00 3.95
2114 2978 1.206371 CCCTTATTCCTGACCGTTCGT 59.794 52.381 0.00 0.00 0.00 3.85
2115 2979 2.537401 CCTTATTCCTGACCGTTCGTC 58.463 52.381 0.00 0.00 42.33 4.20
2116 2980 2.537401 CTTATTCCTGACCGTTCGTCC 58.463 52.381 0.00 0.00 41.18 4.79
2117 2981 1.548081 TATTCCTGACCGTTCGTCCA 58.452 50.000 0.00 0.00 41.18 4.02
2118 2982 0.902531 ATTCCTGACCGTTCGTCCAT 59.097 50.000 0.00 0.00 41.18 3.41
2119 2983 0.037697 TTCCTGACCGTTCGTCCATG 60.038 55.000 0.00 0.00 41.18 3.66
2120 2984 2.100631 CCTGACCGTTCGTCCATGC 61.101 63.158 0.00 0.00 41.18 4.06
2121 2985 1.079819 CTGACCGTTCGTCCATGCT 60.080 57.895 0.00 0.00 41.18 3.79
2122 2986 0.670546 CTGACCGTTCGTCCATGCTT 60.671 55.000 0.00 0.00 41.18 3.91
2123 2987 0.948623 TGACCGTTCGTCCATGCTTG 60.949 55.000 0.00 0.00 41.18 4.01
2124 2988 0.949105 GACCGTTCGTCCATGCTTGT 60.949 55.000 0.00 0.00 35.23 3.16
2125 2989 0.949105 ACCGTTCGTCCATGCTTGTC 60.949 55.000 0.00 0.00 0.00 3.18
2126 2990 0.948623 CCGTTCGTCCATGCTTGTCA 60.949 55.000 0.00 0.00 0.00 3.58
2127 2991 0.163788 CGTTCGTCCATGCTTGTCAC 59.836 55.000 0.00 0.00 0.00 3.67
2128 2992 0.163788 GTTCGTCCATGCTTGTCACG 59.836 55.000 12.53 12.53 0.00 4.35
2129 2993 0.032815 TTCGTCCATGCTTGTCACGA 59.967 50.000 15.74 15.74 35.57 4.35
2130 2994 0.666274 TCGTCCATGCTTGTCACGAC 60.666 55.000 15.74 7.83 33.62 4.34
2131 2995 1.626654 CGTCCATGCTTGTCACGACC 61.627 60.000 13.15 0.00 31.93 4.79
2132 2996 1.003839 TCCATGCTTGTCACGACCC 60.004 57.895 0.00 0.00 0.00 4.46
2133 2997 1.302431 CCATGCTTGTCACGACCCA 60.302 57.895 0.00 0.00 0.00 4.51
2134 2998 1.577328 CCATGCTTGTCACGACCCAC 61.577 60.000 0.00 0.00 0.00 4.61
2135 2999 0.884259 CATGCTTGTCACGACCCACA 60.884 55.000 0.00 0.00 0.00 4.17
2136 3000 0.179032 ATGCTTGTCACGACCCACAA 60.179 50.000 0.00 0.00 0.00 3.33
2138 3002 3.379650 CTTGTCACGACCCACAAGT 57.620 52.632 4.03 0.00 43.07 3.16
2139 3003 2.519377 CTTGTCACGACCCACAAGTA 57.481 50.000 4.03 0.00 43.07 2.24
2140 3004 2.404215 CTTGTCACGACCCACAAGTAG 58.596 52.381 4.03 0.00 43.07 2.57
2141 3005 0.677288 TGTCACGACCCACAAGTAGG 59.323 55.000 0.00 0.00 0.00 3.18
2142 3006 0.677842 GTCACGACCCACAAGTAGGT 59.322 55.000 0.00 0.00 39.75 3.08
2145 3009 4.592426 GACCCACAAGTAGGTCGC 57.408 61.111 2.16 0.00 42.98 5.19
2146 3010 1.972978 GACCCACAAGTAGGTCGCT 59.027 57.895 2.16 0.00 42.98 4.93
2147 3011 1.180029 GACCCACAAGTAGGTCGCTA 58.820 55.000 2.16 0.00 42.98 4.26
2148 3012 1.134560 GACCCACAAGTAGGTCGCTAG 59.865 57.143 2.16 0.00 42.98 3.42
2149 3013 0.460311 CCCACAAGTAGGTCGCTAGG 59.540 60.000 0.00 0.00 0.00 3.02
2150 3014 0.179108 CCACAAGTAGGTCGCTAGGC 60.179 60.000 0.00 0.00 0.00 3.93
2151 3015 0.179108 CACAAGTAGGTCGCTAGGCC 60.179 60.000 0.00 0.00 44.17 5.19
2152 3016 1.328430 ACAAGTAGGTCGCTAGGCCC 61.328 60.000 0.00 0.00 45.21 5.80
2153 3017 1.043673 CAAGTAGGTCGCTAGGCCCT 61.044 60.000 0.00 0.00 45.21 5.19
2154 3018 0.554792 AAGTAGGTCGCTAGGCCCTA 59.445 55.000 0.00 0.00 45.21 3.53
2155 3019 0.778720 AGTAGGTCGCTAGGCCCTAT 59.221 55.000 0.00 0.00 45.21 2.57
2156 3020 0.889306 GTAGGTCGCTAGGCCCTATG 59.111 60.000 0.00 0.00 45.21 2.23
2157 3021 0.481567 TAGGTCGCTAGGCCCTATGT 59.518 55.000 0.00 0.00 45.21 2.29
2158 3022 1.115930 AGGTCGCTAGGCCCTATGTG 61.116 60.000 0.00 0.00 45.21 3.21
2159 3023 1.113517 GGTCGCTAGGCCCTATGTGA 61.114 60.000 0.00 0.00 35.69 3.58
2160 3024 0.032267 GTCGCTAGGCCCTATGTGAC 59.968 60.000 14.12 14.12 33.75 3.67
2161 3025 1.007271 CGCTAGGCCCTATGTGACG 60.007 63.158 0.00 0.00 0.00 4.35
2162 3026 1.367840 GCTAGGCCCTATGTGACGG 59.632 63.158 0.00 0.00 0.00 4.79
2163 3027 1.367840 CTAGGCCCTATGTGACGGC 59.632 63.158 0.00 0.00 42.23 5.68
2164 3028 1.382009 TAGGCCCTATGTGACGGCA 60.382 57.895 0.00 0.00 44.90 5.69
2165 3029 1.682451 TAGGCCCTATGTGACGGCAC 61.682 60.000 16.50 16.50 44.90 5.01
2173 3037 3.550656 GTGACGGCACAGTGCTAC 58.449 61.111 24.75 15.78 44.28 3.58
2174 3038 1.300620 GTGACGGCACAGTGCTACA 60.301 57.895 24.75 17.94 44.28 2.74
2175 3039 1.006220 TGACGGCACAGTGCTACAG 60.006 57.895 24.75 15.47 44.28 2.74
2176 3040 1.006102 GACGGCACAGTGCTACAGT 60.006 57.895 24.75 18.27 44.28 3.55
2177 3041 1.284982 GACGGCACAGTGCTACAGTG 61.285 60.000 24.75 10.40 44.28 3.66
2178 3042 2.029288 CGGCACAGTGCTACAGTGG 61.029 63.158 24.75 2.82 44.28 4.00
2179 3043 1.071471 GGCACAGTGCTACAGTGGT 59.929 57.895 24.75 0.00 44.28 4.16
2180 3044 0.320374 GGCACAGTGCTACAGTGGTA 59.680 55.000 24.75 0.00 44.28 3.25
2181 3045 1.066143 GGCACAGTGCTACAGTGGTAT 60.066 52.381 24.75 0.00 44.28 2.73
2182 3046 2.002586 GCACAGTGCTACAGTGGTATG 58.997 52.381 18.92 0.00 40.96 2.39
2183 3047 2.002586 CACAGTGCTACAGTGGTATGC 58.997 52.381 7.29 0.00 38.94 3.14
2184 3048 1.623311 ACAGTGCTACAGTGGTATGCA 59.377 47.619 7.29 0.00 38.94 3.96
2185 3049 2.002586 CAGTGCTACAGTGGTATGCAC 58.997 52.381 17.93 17.93 45.11 4.57
2186 3050 0.999406 GTGCTACAGTGGTATGCACG 59.001 55.000 13.31 0.00 40.87 5.34
2187 3051 0.108377 TGCTACAGTGGTATGCACGG 60.108 55.000 0.00 0.00 32.49 4.94
2188 3052 1.429148 GCTACAGTGGTATGCACGGC 61.429 60.000 0.00 0.00 0.00 5.68
2189 3053 0.108377 CTACAGTGGTATGCACGGCA 60.108 55.000 0.00 1.01 44.86 5.69
2190 3054 0.321996 TACAGTGGTATGCACGGCAA 59.678 50.000 2.68 0.00 43.62 4.52
2191 3055 1.234615 ACAGTGGTATGCACGGCAAC 61.235 55.000 2.68 3.55 43.62 4.17
2192 3056 0.955428 CAGTGGTATGCACGGCAACT 60.955 55.000 2.68 0.00 43.62 3.16
2193 3057 0.250727 AGTGGTATGCACGGCAACTT 60.251 50.000 2.68 0.00 43.62 2.66
2194 3058 0.596082 GTGGTATGCACGGCAACTTT 59.404 50.000 2.68 0.00 43.62 2.66
2195 3059 0.595588 TGGTATGCACGGCAACTTTG 59.404 50.000 2.68 0.00 43.62 2.77
2196 3060 0.596082 GGTATGCACGGCAACTTTGT 59.404 50.000 2.68 0.00 43.62 2.83
2197 3061 1.000717 GGTATGCACGGCAACTTTGTT 60.001 47.619 2.68 0.00 43.62 2.83
2198 3062 2.050691 GTATGCACGGCAACTTTGTTG 58.949 47.619 6.12 6.12 43.62 3.33
2199 3063 0.459489 ATGCACGGCAACTTTGTTGT 59.541 45.000 11.35 0.00 43.62 3.32
2200 3064 0.457509 TGCACGGCAACTTTGTTGTG 60.458 50.000 11.35 9.85 34.76 3.33
2201 3065 1.751536 GCACGGCAACTTTGTTGTGC 61.752 55.000 18.38 18.38 46.02 4.57
2202 3066 0.179140 CACGGCAACTTTGTTGTGCT 60.179 50.000 11.35 0.00 32.05 4.40
2203 3067 0.179140 ACGGCAACTTTGTTGTGCTG 60.179 50.000 11.35 6.91 37.82 4.41
2204 3068 1.481819 CGGCAACTTTGTTGTGCTGC 61.482 55.000 11.35 0.00 0.00 5.25
2205 3069 0.179103 GGCAACTTTGTTGTGCTGCT 60.179 50.000 11.35 0.00 0.00 4.24
2206 3070 1.066908 GGCAACTTTGTTGTGCTGCTA 59.933 47.619 11.35 0.00 0.00 3.49
2207 3071 2.388121 GCAACTTTGTTGTGCTGCTAG 58.612 47.619 11.35 0.00 0.00 3.42
2208 3072 2.223572 GCAACTTTGTTGTGCTGCTAGT 60.224 45.455 11.35 0.00 0.00 2.57
2209 3073 3.365832 CAACTTTGTTGTGCTGCTAGTG 58.634 45.455 0.00 0.00 0.00 2.74
2210 3074 2.643551 ACTTTGTTGTGCTGCTAGTGT 58.356 42.857 0.00 0.00 0.00 3.55
2211 3075 2.614057 ACTTTGTTGTGCTGCTAGTGTC 59.386 45.455 0.00 0.00 0.00 3.67
2212 3076 2.323968 TTGTTGTGCTGCTAGTGTCA 57.676 45.000 0.00 0.00 0.00 3.58
2213 3077 1.581934 TGTTGTGCTGCTAGTGTCAC 58.418 50.000 0.00 0.00 0.00 3.67
2214 3078 1.138859 TGTTGTGCTGCTAGTGTCACT 59.861 47.619 10.99 10.99 0.00 3.41
2215 3079 2.213499 GTTGTGCTGCTAGTGTCACTT 58.787 47.619 11.54 0.00 0.00 3.16
2216 3080 2.154854 TGTGCTGCTAGTGTCACTTC 57.845 50.000 11.54 4.49 0.00 3.01
2217 3081 1.688735 TGTGCTGCTAGTGTCACTTCT 59.311 47.619 11.54 0.00 0.00 2.85
2218 3082 2.064762 GTGCTGCTAGTGTCACTTCTG 58.935 52.381 11.54 8.74 0.00 3.02
2219 3083 1.963515 TGCTGCTAGTGTCACTTCTGA 59.036 47.619 11.54 0.00 0.00 3.27
2220 3084 2.564504 TGCTGCTAGTGTCACTTCTGAT 59.435 45.455 11.54 0.00 0.00 2.90
2221 3085 3.186119 GCTGCTAGTGTCACTTCTGATC 58.814 50.000 11.54 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 7.312899 AGAAACCAAATACCTTTCGCTATTTG 58.687 34.615 6.81 6.81 38.94 2.32
292 295 3.871594 GGTATGCAATCTCTACTGCGTTT 59.128 43.478 0.00 0.00 41.63 3.60
420 423 5.755409 TGTAAGATTCAGTAGGAGGCAAA 57.245 39.130 0.00 0.00 0.00 3.68
712 715 3.685139 ACTTCTCATGTTCATGTCGGT 57.315 42.857 11.73 5.57 0.00 4.69
805 808 3.194861 GGCACGTACATAAGAATGCAGA 58.805 45.455 0.00 0.00 36.50 4.26
1949 2813 9.327529 GCGTACACATCTATACTACTATTGAAC 57.672 37.037 0.00 0.00 0.00 3.18
1950 2814 9.281371 AGCGTACACATCTATACTACTATTGAA 57.719 33.333 0.00 0.00 0.00 2.69
1951 2815 8.843885 AGCGTACACATCTATACTACTATTGA 57.156 34.615 0.00 0.00 0.00 2.57
1952 2816 9.894783 AAAGCGTACACATCTATACTACTATTG 57.105 33.333 0.00 0.00 0.00 1.90
1953 2817 9.894783 CAAAGCGTACACATCTATACTACTATT 57.105 33.333 0.00 0.00 0.00 1.73
1954 2818 9.064706 ACAAAGCGTACACATCTATACTACTAT 57.935 33.333 0.00 0.00 0.00 2.12
1955 2819 8.340443 CACAAAGCGTACACATCTATACTACTA 58.660 37.037 0.00 0.00 0.00 1.82
1956 2820 7.194278 CACAAAGCGTACACATCTATACTACT 58.806 38.462 0.00 0.00 0.00 2.57
1957 2821 6.417044 CCACAAAGCGTACACATCTATACTAC 59.583 42.308 0.00 0.00 0.00 2.73
1958 2822 6.460537 CCCACAAAGCGTACACATCTATACTA 60.461 42.308 0.00 0.00 0.00 1.82
1959 2823 5.348986 CCACAAAGCGTACACATCTATACT 58.651 41.667 0.00 0.00 0.00 2.12
1960 2824 4.506654 CCCACAAAGCGTACACATCTATAC 59.493 45.833 0.00 0.00 0.00 1.47
1961 2825 4.442332 CCCCACAAAGCGTACACATCTATA 60.442 45.833 0.00 0.00 0.00 1.31
1962 2826 3.531538 CCCACAAAGCGTACACATCTAT 58.468 45.455 0.00 0.00 0.00 1.98
1963 2827 2.354303 CCCCACAAAGCGTACACATCTA 60.354 50.000 0.00 0.00 0.00 1.98
1964 2828 1.610624 CCCCACAAAGCGTACACATCT 60.611 52.381 0.00 0.00 0.00 2.90
1965 2829 0.802494 CCCCACAAAGCGTACACATC 59.198 55.000 0.00 0.00 0.00 3.06
1966 2830 0.109723 ACCCCACAAAGCGTACACAT 59.890 50.000 0.00 0.00 0.00 3.21
1967 2831 0.816018 CACCCCACAAAGCGTACACA 60.816 55.000 0.00 0.00 0.00 3.72
1968 2832 0.816421 ACACCCCACAAAGCGTACAC 60.816 55.000 0.00 0.00 0.00 2.90
1969 2833 0.816018 CACACCCCACAAAGCGTACA 60.816 55.000 0.00 0.00 0.00 2.90
1970 2834 1.946267 CACACCCCACAAAGCGTAC 59.054 57.895 0.00 0.00 0.00 3.67
1971 2835 1.894756 GCACACCCCACAAAGCGTA 60.895 57.895 0.00 0.00 0.00 4.42
1972 2836 3.216292 GCACACCCCACAAAGCGT 61.216 61.111 0.00 0.00 0.00 5.07
1973 2837 1.169661 TAAGCACACCCCACAAAGCG 61.170 55.000 0.00 0.00 0.00 4.68
1974 2838 1.036707 TTAAGCACACCCCACAAAGC 58.963 50.000 0.00 0.00 0.00 3.51
1975 2839 3.810310 TTTTAAGCACACCCCACAAAG 57.190 42.857 0.00 0.00 0.00 2.77
2030 2894 2.768769 TGGGGACACCACCGTTCA 60.769 61.111 0.00 0.00 46.80 3.18
2045 2909 4.814294 GTAGTCGCGGCCCTGTGG 62.814 72.222 7.31 0.00 0.00 4.17
2046 2910 3.989698 CTGTAGTCGCGGCCCTGTG 62.990 68.421 7.31 0.00 0.00 3.66
2047 2911 3.760035 CTGTAGTCGCGGCCCTGT 61.760 66.667 7.31 0.00 0.00 4.00
2048 2912 4.514577 CCTGTAGTCGCGGCCCTG 62.515 72.222 7.31 2.11 0.00 4.45
2050 2914 4.814294 CACCTGTAGTCGCGGCCC 62.814 72.222 7.31 0.00 0.00 5.80
2051 2915 4.065281 ACACCTGTAGTCGCGGCC 62.065 66.667 7.31 0.00 0.00 6.13
2052 2916 2.809601 CACACCTGTAGTCGCGGC 60.810 66.667 0.21 0.21 0.00 6.53
2053 2917 1.945354 ATCCACACCTGTAGTCGCGG 61.945 60.000 6.13 0.00 0.00 6.46
2054 2918 0.802222 CATCCACACCTGTAGTCGCG 60.802 60.000 0.00 0.00 0.00 5.87
2055 2919 1.084370 GCATCCACACCTGTAGTCGC 61.084 60.000 0.00 0.00 0.00 5.19
2056 2920 0.246360 TGCATCCACACCTGTAGTCG 59.754 55.000 0.00 0.00 0.00 4.18
2057 2921 1.550524 TCTGCATCCACACCTGTAGTC 59.449 52.381 0.00 0.00 0.00 2.59
2058 2922 1.276421 GTCTGCATCCACACCTGTAGT 59.724 52.381 0.00 0.00 0.00 2.73
2059 2923 1.552337 AGTCTGCATCCACACCTGTAG 59.448 52.381 0.00 0.00 0.00 2.74
2060 2924 1.644509 AGTCTGCATCCACACCTGTA 58.355 50.000 0.00 0.00 0.00 2.74
2061 2925 0.767375 AAGTCTGCATCCACACCTGT 59.233 50.000 0.00 0.00 0.00 4.00
2062 2926 1.162698 CAAGTCTGCATCCACACCTG 58.837 55.000 0.00 0.00 0.00 4.00
2063 2927 0.767375 ACAAGTCTGCATCCACACCT 59.233 50.000 0.00 0.00 0.00 4.00
2064 2928 0.877071 CACAAGTCTGCATCCACACC 59.123 55.000 0.00 0.00 0.00 4.16
2065 2929 1.532868 GTCACAAGTCTGCATCCACAC 59.467 52.381 0.00 0.00 0.00 3.82
2066 2930 1.417517 AGTCACAAGTCTGCATCCACA 59.582 47.619 0.00 0.00 0.00 4.17
2067 2931 2.072298 GAGTCACAAGTCTGCATCCAC 58.928 52.381 0.00 0.00 0.00 4.02
2068 2932 1.002430 GGAGTCACAAGTCTGCATCCA 59.998 52.381 0.00 0.00 0.00 3.41
2069 2933 1.677217 GGGAGTCACAAGTCTGCATCC 60.677 57.143 0.00 0.00 0.00 3.51
2070 2934 1.677217 GGGGAGTCACAAGTCTGCATC 60.677 57.143 0.00 0.00 0.00 3.91
2071 2935 0.326264 GGGGAGTCACAAGTCTGCAT 59.674 55.000 0.00 0.00 0.00 3.96
2072 2936 0.764369 AGGGGAGTCACAAGTCTGCA 60.764 55.000 0.00 0.00 0.00 4.41
2073 2937 0.036858 GAGGGGAGTCACAAGTCTGC 60.037 60.000 0.00 0.00 0.00 4.26
2074 2938 1.001406 GTGAGGGGAGTCACAAGTCTG 59.999 57.143 0.00 0.00 45.34 3.51
2075 2939 1.343069 GTGAGGGGAGTCACAAGTCT 58.657 55.000 0.00 0.00 45.34 3.24
2076 2940 3.917072 GTGAGGGGAGTCACAAGTC 57.083 57.895 0.00 0.00 45.34 3.01
2081 2945 1.880941 ATAAGGGTGAGGGGAGTCAC 58.119 55.000 0.00 0.00 45.30 3.67
2082 2946 2.478292 GAATAAGGGTGAGGGGAGTCA 58.522 52.381 0.00 0.00 0.00 3.41
2083 2947 1.769465 GGAATAAGGGTGAGGGGAGTC 59.231 57.143 0.00 0.00 0.00 3.36
2084 2948 1.369983 AGGAATAAGGGTGAGGGGAGT 59.630 52.381 0.00 0.00 0.00 3.85
2085 2949 1.771255 CAGGAATAAGGGTGAGGGGAG 59.229 57.143 0.00 0.00 0.00 4.30
2086 2950 1.368203 TCAGGAATAAGGGTGAGGGGA 59.632 52.381 0.00 0.00 0.00 4.81
2087 2951 1.490910 GTCAGGAATAAGGGTGAGGGG 59.509 57.143 0.00 0.00 0.00 4.79
2088 2952 1.490910 GGTCAGGAATAAGGGTGAGGG 59.509 57.143 0.00 0.00 0.00 4.30
2089 2953 1.139058 CGGTCAGGAATAAGGGTGAGG 59.861 57.143 0.00 0.00 0.00 3.86
2090 2954 1.831736 ACGGTCAGGAATAAGGGTGAG 59.168 52.381 0.00 0.00 0.00 3.51
2091 2955 1.946984 ACGGTCAGGAATAAGGGTGA 58.053 50.000 0.00 0.00 0.00 4.02
2092 2956 2.629051 GAACGGTCAGGAATAAGGGTG 58.371 52.381 0.00 0.00 0.00 4.61
2093 2957 1.206371 CGAACGGTCAGGAATAAGGGT 59.794 52.381 0.00 0.00 0.00 4.34
2094 2958 1.206371 ACGAACGGTCAGGAATAAGGG 59.794 52.381 0.00 0.00 0.00 3.95
2095 2959 2.537401 GACGAACGGTCAGGAATAAGG 58.463 52.381 0.00 0.00 45.36 2.69
2105 2969 0.949105 ACAAGCATGGACGAACGGTC 60.949 55.000 0.00 0.00 45.31 4.79
2106 2970 0.949105 GACAAGCATGGACGAACGGT 60.949 55.000 0.00 0.00 0.00 4.83
2107 2971 0.948623 TGACAAGCATGGACGAACGG 60.949 55.000 0.00 0.00 0.00 4.44
2108 2972 0.163788 GTGACAAGCATGGACGAACG 59.836 55.000 0.00 0.00 0.00 3.95
2109 2973 0.163788 CGTGACAAGCATGGACGAAC 59.836 55.000 9.38 0.00 38.24 3.95
2110 2974 0.032815 TCGTGACAAGCATGGACGAA 59.967 50.000 13.80 1.66 40.44 3.85
2111 2975 0.666274 GTCGTGACAAGCATGGACGA 60.666 55.000 12.59 12.59 40.83 4.20
2112 2976 1.626654 GGTCGTGACAAGCATGGACG 61.627 60.000 8.86 8.86 37.68 4.79
2113 2977 1.298859 GGGTCGTGACAAGCATGGAC 61.299 60.000 2.00 0.00 34.18 4.02
2114 2978 1.003839 GGGTCGTGACAAGCATGGA 60.004 57.895 2.00 0.00 34.18 3.41
2115 2979 1.302431 TGGGTCGTGACAAGCATGG 60.302 57.895 2.00 0.00 34.18 3.66
2116 2980 0.884259 TGTGGGTCGTGACAAGCATG 60.884 55.000 2.00 0.00 34.72 4.06
2117 2981 0.179032 TTGTGGGTCGTGACAAGCAT 60.179 50.000 2.00 0.00 0.00 3.79
2118 2982 0.813610 CTTGTGGGTCGTGACAAGCA 60.814 55.000 2.00 0.00 41.84 3.91
2119 2983 1.941812 CTTGTGGGTCGTGACAAGC 59.058 57.895 2.00 0.00 41.84 4.01
2121 2985 1.069513 CCTACTTGTGGGTCGTGACAA 59.930 52.381 2.00 0.00 0.00 3.18
2122 2986 0.677288 CCTACTTGTGGGTCGTGACA 59.323 55.000 2.00 0.00 0.00 3.58
2123 2987 0.677842 ACCTACTTGTGGGTCGTGAC 59.322 55.000 2.86 0.00 0.00 3.67
2124 2988 0.963962 GACCTACTTGTGGGTCGTGA 59.036 55.000 18.04 0.00 41.82 4.35
2125 2989 3.509388 GACCTACTTGTGGGTCGTG 57.491 57.895 18.04 0.00 41.82 4.35
2128 2992 1.134560 CTAGCGACCTACTTGTGGGTC 59.865 57.143 21.47 21.47 46.00 4.46
2129 2993 1.183549 CTAGCGACCTACTTGTGGGT 58.816 55.000 8.55 8.55 38.70 4.51
2130 2994 0.460311 CCTAGCGACCTACTTGTGGG 59.540 60.000 1.49 1.49 0.00 4.61
2131 2995 0.179108 GCCTAGCGACCTACTTGTGG 60.179 60.000 0.00 0.00 0.00 4.17
2132 2996 0.179108 GGCCTAGCGACCTACTTGTG 60.179 60.000 0.00 0.00 0.00 3.33
2133 2997 1.328430 GGGCCTAGCGACCTACTTGT 61.328 60.000 0.84 0.00 0.00 3.16
2134 2998 1.043673 AGGGCCTAGCGACCTACTTG 61.044 60.000 2.82 0.00 31.53 3.16
2135 2999 0.554792 TAGGGCCTAGCGACCTACTT 59.445 55.000 9.81 0.00 35.84 2.24
2136 3000 0.778720 ATAGGGCCTAGCGACCTACT 59.221 55.000 19.74 0.00 39.50 2.57
2137 3001 0.889306 CATAGGGCCTAGCGACCTAC 59.111 60.000 19.74 0.00 39.50 3.18
2138 3002 0.481567 ACATAGGGCCTAGCGACCTA 59.518 55.000 19.74 13.42 40.84 3.08
2139 3003 1.115930 CACATAGGGCCTAGCGACCT 61.116 60.000 19.74 10.17 38.40 3.85
2140 3004 1.113517 TCACATAGGGCCTAGCGACC 61.114 60.000 19.74 0.00 0.00 4.79
2141 3005 0.032267 GTCACATAGGGCCTAGCGAC 59.968 60.000 19.74 18.97 0.00 5.19
2142 3006 1.452953 CGTCACATAGGGCCTAGCGA 61.453 60.000 19.74 11.83 0.00 4.93
2143 3007 1.007271 CGTCACATAGGGCCTAGCG 60.007 63.158 19.74 14.60 0.00 4.26
2144 3008 1.367840 CCGTCACATAGGGCCTAGC 59.632 63.158 19.74 5.73 0.00 3.42
2156 3020 1.284982 CTGTAGCACTGTGCCGTCAC 61.285 60.000 27.74 19.77 46.52 3.67
2157 3021 1.006220 CTGTAGCACTGTGCCGTCA 60.006 57.895 27.74 21.25 46.52 4.35
2158 3022 1.006102 ACTGTAGCACTGTGCCGTC 60.006 57.895 27.74 18.18 46.52 4.79
2159 3023 1.300931 CACTGTAGCACTGTGCCGT 60.301 57.895 27.74 16.90 46.52 5.68
2160 3024 2.029288 CCACTGTAGCACTGTGCCG 61.029 63.158 27.74 16.30 46.52 5.69
2161 3025 0.320374 TACCACTGTAGCACTGTGCC 59.680 55.000 27.74 14.85 46.52 5.01
2162 3026 2.002586 CATACCACTGTAGCACTGTGC 58.997 52.381 24.59 24.59 43.79 4.57
2163 3027 2.002586 GCATACCACTGTAGCACTGTG 58.997 52.381 2.76 2.76 44.44 3.66
2164 3028 1.623311 TGCATACCACTGTAGCACTGT 59.377 47.619 0.00 0.00 30.98 3.55
2165 3029 2.002586 GTGCATACCACTGTAGCACTG 58.997 52.381 8.44 0.00 42.45 3.66
2166 3030 1.404181 CGTGCATACCACTGTAGCACT 60.404 52.381 13.07 0.00 42.94 4.40
2167 3031 0.999406 CGTGCATACCACTGTAGCAC 59.001 55.000 0.00 0.00 42.38 4.40
2168 3032 0.108377 CCGTGCATACCACTGTAGCA 60.108 55.000 0.00 0.00 42.42 3.49
2169 3033 1.429148 GCCGTGCATACCACTGTAGC 61.429 60.000 0.00 0.00 42.42 3.58
2170 3034 0.108377 TGCCGTGCATACCACTGTAG 60.108 55.000 0.00 0.00 42.42 2.74
2171 3035 0.321996 TTGCCGTGCATACCACTGTA 59.678 50.000 0.00 0.00 42.42 2.74
2172 3036 1.072332 TTGCCGTGCATACCACTGT 59.928 52.632 0.00 0.00 42.42 3.55
2173 3037 0.955428 AGTTGCCGTGCATACCACTG 60.955 55.000 0.00 0.00 42.42 3.66
2174 3038 0.250727 AAGTTGCCGTGCATACCACT 60.251 50.000 0.00 0.00 42.42 4.00
2175 3039 0.596082 AAAGTTGCCGTGCATACCAC 59.404 50.000 0.00 0.00 38.76 4.16
2176 3040 0.595588 CAAAGTTGCCGTGCATACCA 59.404 50.000 0.00 0.00 38.76 3.25
2177 3041 0.596082 ACAAAGTTGCCGTGCATACC 59.404 50.000 0.00 0.00 38.76 2.73
2178 3042 2.050691 CAACAAAGTTGCCGTGCATAC 58.949 47.619 0.00 2.42 38.76 2.39
2179 3043 1.678627 ACAACAAAGTTGCCGTGCATA 59.321 42.857 9.60 0.00 38.76 3.14
2180 3044 0.459489 ACAACAAAGTTGCCGTGCAT 59.541 45.000 9.60 0.00 38.76 3.96
2181 3045 0.457509 CACAACAAAGTTGCCGTGCA 60.458 50.000 9.60 0.00 36.47 4.57
2182 3046 1.751536 GCACAACAAAGTTGCCGTGC 61.752 55.000 17.46 17.46 45.76 5.34
2183 3047 0.179140 AGCACAACAAAGTTGCCGTG 60.179 50.000 9.60 8.38 36.96 4.94
2184 3048 0.179140 CAGCACAACAAAGTTGCCGT 60.179 50.000 9.60 0.00 0.00 5.68
2185 3049 1.481819 GCAGCACAACAAAGTTGCCG 61.482 55.000 9.60 3.20 36.18 5.69
2186 3050 0.179103 AGCAGCACAACAAAGTTGCC 60.179 50.000 9.60 2.12 42.04 4.52
2187 3051 2.223572 ACTAGCAGCACAACAAAGTTGC 60.224 45.455 9.60 0.00 41.50 4.17
2188 3052 3.181497 ACACTAGCAGCACAACAAAGTTG 60.181 43.478 8.24 8.24 0.00 3.16
2189 3053 3.016736 ACACTAGCAGCACAACAAAGTT 58.983 40.909 0.00 0.00 0.00 2.66
2190 3054 2.614057 GACACTAGCAGCACAACAAAGT 59.386 45.455 0.00 0.00 0.00 2.66
2191 3055 2.613595 TGACACTAGCAGCACAACAAAG 59.386 45.455 0.00 0.00 0.00 2.77
2192 3056 2.354510 GTGACACTAGCAGCACAACAAA 59.645 45.455 0.00 0.00 0.00 2.83
2193 3057 1.939934 GTGACACTAGCAGCACAACAA 59.060 47.619 0.00 0.00 0.00 2.83
2194 3058 1.138859 AGTGACACTAGCAGCACAACA 59.861 47.619 6.24 0.00 33.85 3.33
2195 3059 1.871080 AGTGACACTAGCAGCACAAC 58.129 50.000 6.24 0.00 33.85 3.32
2196 3060 2.103094 AGAAGTGACACTAGCAGCACAA 59.897 45.455 8.91 0.00 33.85 3.33
2197 3061 1.688735 AGAAGTGACACTAGCAGCACA 59.311 47.619 8.91 0.00 33.85 4.57
2198 3062 2.064762 CAGAAGTGACACTAGCAGCAC 58.935 52.381 8.91 0.00 0.00 4.40
2199 3063 1.963515 TCAGAAGTGACACTAGCAGCA 59.036 47.619 8.91 0.00 0.00 4.41
2200 3064 2.732412 TCAGAAGTGACACTAGCAGC 57.268 50.000 8.91 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.