Multiple sequence alignment - TraesCS6A01G297400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G297400 chr6A 100.000 2604 0 0 1 2604 530999881 531002484 0.000000e+00 4809
1 TraesCS6A01G297400 chr6A 98.684 152 2 0 3 154 530994795 530994946 1.190000e-68 270
2 TraesCS6A01G297400 chr6A 79.842 253 42 4 156 408 242226889 242226646 2.660000e-40 176
3 TraesCS6A01G297400 chr6D 92.965 1393 38 29 492 1860 386161649 386163005 0.000000e+00 1975
4 TraesCS6A01G297400 chr6D 93.779 434 15 4 1860 2289 386163094 386163519 2.180000e-180 641
5 TraesCS6A01G297400 chr6D 93.016 315 19 2 2290 2604 386163562 386163873 8.490000e-125 457
6 TraesCS6A01G297400 chr6D 82.530 166 26 2 296 461 386156642 386156804 2.700000e-30 143
7 TraesCS6A01G297400 chr6B 92.413 1318 55 12 559 1858 576812226 576813516 0.000000e+00 1838
8 TraesCS6A01G297400 chr6B 91.206 398 20 4 1892 2286 576813613 576813998 6.380000e-146 527
9 TraesCS6A01G297400 chr6B 89.241 316 31 3 2290 2604 576814044 576814357 2.430000e-105 392
10 TraesCS6A01G297400 chr7A 99.329 149 1 0 1 149 88014960 88015108 1.190000e-68 270
11 TraesCS6A01G297400 chr7A 99.329 149 1 0 1 149 649609603 649609751 1.190000e-68 270
12 TraesCS6A01G297400 chr7A 82.935 293 42 6 165 454 8676825 8676538 9.250000e-65 257
13 TraesCS6A01G297400 chr3D 99.329 149 1 0 1 149 213082515 213082367 1.190000e-68 270
14 TraesCS6A01G297400 chr3D 99.324 148 1 0 4 151 213066493 213066346 4.270000e-68 268
15 TraesCS6A01G297400 chr1D 99.329 149 1 0 1 149 352551808 352551956 1.190000e-68 270
16 TraesCS6A01G297400 chr1D 99.329 149 1 0 1 149 352557391 352557539 1.190000e-68 270
17 TraesCS6A01G297400 chr1A 99.329 149 1 0 1 149 380077795 380077647 1.190000e-68 270
18 TraesCS6A01G297400 chr4A 98.667 150 2 0 1 150 427312309 427312160 1.540000e-67 267
19 TraesCS6A01G297400 chr2B 78.746 287 48 10 173 454 54242058 54241780 2.060000e-41 180
20 TraesCS6A01G297400 chr2B 79.231 260 43 10 173 426 66940531 66940277 1.240000e-38 171
21 TraesCS6A01G297400 chr7B 82.653 196 24 9 168 358 322481095 322480905 5.770000e-37 165
22 TraesCS6A01G297400 chr7B 77.186 263 54 6 169 426 748557580 748557841 5.810000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G297400 chr6A 530999881 531002484 2603 False 4809.000000 4809 100.000000 1 2604 1 chr6A.!!$F2 2603
1 TraesCS6A01G297400 chr6D 386161649 386163873 2224 False 1024.333333 1975 93.253333 492 2604 3 chr6D.!!$F2 2112
2 TraesCS6A01G297400 chr6B 576812226 576814357 2131 False 919.000000 1838 90.953333 559 2604 3 chr6B.!!$F1 2045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 384 0.108329 AGCCTGTACACACCGCATAC 60.108 55.0 0.0 0.0 0.0 2.39 F
389 390 0.319641 TACACACCGCATACGCACAA 60.320 50.0 0.0 0.0 38.4 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1484 1508 0.523072 GAACGCATGCATCACAGGTT 59.477 50.0 19.57 11.43 30.99 3.50 R
2105 2220 0.956633 TTTCTGAAGCTGCTTGCCTG 59.043 50.0 21.25 10.29 44.23 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.835113 ACGAATATTTTGGCAATGCTACT 57.165 34.783 4.82 0.00 0.00 2.57
23 24 5.821204 ACGAATATTTTGGCAATGCTACTC 58.179 37.500 4.82 0.00 0.00 2.59
24 25 4.905866 CGAATATTTTGGCAATGCTACTCG 59.094 41.667 4.82 2.41 0.00 4.18
25 26 5.277297 CGAATATTTTGGCAATGCTACTCGA 60.277 40.000 4.82 0.00 0.00 4.04
26 27 6.566564 CGAATATTTTGGCAATGCTACTCGAT 60.567 38.462 4.82 0.00 0.00 3.59
27 28 3.763097 TTTTGGCAATGCTACTCGATG 57.237 42.857 4.82 0.00 0.00 3.84
28 29 2.401583 TTGGCAATGCTACTCGATGT 57.598 45.000 4.82 0.00 0.00 3.06
29 30 3.535280 TTGGCAATGCTACTCGATGTA 57.465 42.857 4.82 0.00 0.00 2.29
30 31 3.751479 TGGCAATGCTACTCGATGTAT 57.249 42.857 4.82 0.00 0.00 2.29
31 32 4.071961 TGGCAATGCTACTCGATGTATT 57.928 40.909 4.82 0.00 0.00 1.89
32 33 3.809279 TGGCAATGCTACTCGATGTATTG 59.191 43.478 4.82 14.67 38.61 1.90
33 34 4.058124 GGCAATGCTACTCGATGTATTGA 58.942 43.478 19.68 0.00 38.11 2.57
34 35 4.692625 GGCAATGCTACTCGATGTATTGAT 59.307 41.667 19.68 3.34 38.11 2.57
35 36 5.163913 GGCAATGCTACTCGATGTATTGATC 60.164 44.000 19.68 11.50 38.11 2.92
36 37 5.443824 GCAATGCTACTCGATGTATTGATCG 60.444 44.000 19.68 0.00 45.43 3.69
37 38 4.160736 TGCTACTCGATGTATTGATCGG 57.839 45.455 0.00 0.00 44.41 4.18
38 39 3.568430 TGCTACTCGATGTATTGATCGGT 59.432 43.478 0.00 0.00 44.41 4.69
39 40 3.914966 GCTACTCGATGTATTGATCGGTG 59.085 47.826 0.00 0.00 44.41 4.94
40 41 2.743938 ACTCGATGTATTGATCGGTGC 58.256 47.619 0.00 0.00 44.41 5.01
41 42 2.100749 ACTCGATGTATTGATCGGTGCA 59.899 45.455 0.00 0.00 44.41 4.57
42 43 3.243873 ACTCGATGTATTGATCGGTGCAT 60.244 43.478 0.00 1.36 44.41 3.96
43 44 4.022329 ACTCGATGTATTGATCGGTGCATA 60.022 41.667 0.00 0.00 44.41 3.14
44 45 4.485163 TCGATGTATTGATCGGTGCATAG 58.515 43.478 0.00 2.61 44.41 2.23
45 46 3.061295 CGATGTATTGATCGGTGCATAGC 59.939 47.826 0.00 0.00 41.29 2.97
47 48 1.126846 GTATTGATCGGTGCATAGCGC 59.873 52.381 0.00 0.00 46.67 5.92
60 61 3.702330 GCATAGCGCACGTATATATGGA 58.298 45.455 11.47 0.00 41.79 3.41
61 62 3.731216 GCATAGCGCACGTATATATGGAG 59.269 47.826 11.47 0.43 41.79 3.86
62 63 4.733815 GCATAGCGCACGTATATATGGAGT 60.734 45.833 11.47 0.00 41.79 3.85
63 64 5.505159 GCATAGCGCACGTATATATGGAGTA 60.505 44.000 11.47 0.00 41.79 2.59
64 65 4.352600 AGCGCACGTATATATGGAGTAC 57.647 45.455 11.47 0.00 0.00 2.73
65 66 3.754850 AGCGCACGTATATATGGAGTACA 59.245 43.478 11.47 0.00 0.00 2.90
66 67 4.216902 AGCGCACGTATATATGGAGTACAA 59.783 41.667 11.47 0.00 0.00 2.41
67 68 4.557690 GCGCACGTATATATGGAGTACAAG 59.442 45.833 0.30 0.00 0.00 3.16
68 69 5.093457 CGCACGTATATATGGAGTACAAGG 58.907 45.833 6.89 0.00 0.00 3.61
69 70 5.335426 CGCACGTATATATGGAGTACAAGGT 60.335 44.000 6.89 0.00 0.00 3.50
70 71 5.862323 GCACGTATATATGGAGTACAAGGTG 59.138 44.000 6.89 0.00 0.00 4.00
71 72 6.387465 CACGTATATATGGAGTACAAGGTGG 58.613 44.000 6.89 0.00 0.00 4.61
72 73 5.479375 ACGTATATATGGAGTACAAGGTGGG 59.521 44.000 6.89 0.00 0.00 4.61
73 74 4.910458 ATATATGGAGTACAAGGTGGGC 57.090 45.455 0.00 0.00 0.00 5.36
74 75 1.209621 TATGGAGTACAAGGTGGGCC 58.790 55.000 0.00 0.00 0.00 5.80
75 76 0.844661 ATGGAGTACAAGGTGGGCCA 60.845 55.000 0.00 0.00 37.19 5.36
76 77 1.002502 GGAGTACAAGGTGGGCCAC 60.003 63.158 28.69 28.69 37.19 5.01
77 78 1.758592 GAGTACAAGGTGGGCCACA 59.241 57.895 35.69 14.37 35.86 4.17
78 79 0.109723 GAGTACAAGGTGGGCCACAA 59.890 55.000 35.69 14.04 35.86 3.33
79 80 0.179001 AGTACAAGGTGGGCCACAAC 60.179 55.000 35.69 23.35 35.86 3.32
80 81 1.151908 TACAAGGTGGGCCACAACC 59.848 57.895 35.69 20.64 37.57 3.77
81 82 1.357272 TACAAGGTGGGCCACAACCT 61.357 55.000 35.69 22.62 37.57 3.50
82 83 1.903404 CAAGGTGGGCCACAACCTC 60.903 63.158 35.69 19.26 37.57 3.85
83 84 2.391130 AAGGTGGGCCACAACCTCA 61.391 57.895 35.69 0.00 37.57 3.86
84 85 1.943730 AAGGTGGGCCACAACCTCAA 61.944 55.000 35.69 0.00 37.57 3.02
85 86 2.200337 GGTGGGCCACAACCTCAAC 61.200 63.158 35.69 13.88 35.86 3.18
86 87 1.152756 GTGGGCCACAACCTCAACT 60.153 57.895 31.26 0.00 34.08 3.16
87 88 0.109723 GTGGGCCACAACCTCAACTA 59.890 55.000 31.26 0.00 34.08 2.24
88 89 1.072266 TGGGCCACAACCTCAACTAT 58.928 50.000 0.00 0.00 0.00 2.12
89 90 2.026636 GTGGGCCACAACCTCAACTATA 60.027 50.000 31.26 0.00 34.08 1.31
90 91 2.026636 TGGGCCACAACCTCAACTATAC 60.027 50.000 0.00 0.00 0.00 1.47
91 92 2.026636 GGGCCACAACCTCAACTATACA 60.027 50.000 4.39 0.00 0.00 2.29
92 93 3.560453 GGGCCACAACCTCAACTATACAA 60.560 47.826 4.39 0.00 0.00 2.41
93 94 4.270008 GGCCACAACCTCAACTATACAAT 58.730 43.478 0.00 0.00 0.00 2.71
94 95 4.096382 GGCCACAACCTCAACTATACAATG 59.904 45.833 0.00 0.00 0.00 2.82
95 96 4.941263 GCCACAACCTCAACTATACAATGA 59.059 41.667 0.00 0.00 0.00 2.57
96 97 5.163754 GCCACAACCTCAACTATACAATGAC 60.164 44.000 0.00 0.00 0.00 3.06
97 98 6.173339 CCACAACCTCAACTATACAATGACT 58.827 40.000 0.00 0.00 0.00 3.41
98 99 7.327975 CCACAACCTCAACTATACAATGACTA 58.672 38.462 0.00 0.00 0.00 2.59
99 100 7.492669 CCACAACCTCAACTATACAATGACTAG 59.507 40.741 0.00 0.00 0.00 2.57
100 101 7.492669 CACAACCTCAACTATACAATGACTAGG 59.507 40.741 0.00 0.00 0.00 3.02
101 102 7.399191 ACAACCTCAACTATACAATGACTAGGA 59.601 37.037 0.00 0.00 0.00 2.94
102 103 7.589958 ACCTCAACTATACAATGACTAGGAG 57.410 40.000 0.00 0.00 0.00 3.69
103 104 6.551601 ACCTCAACTATACAATGACTAGGAGG 59.448 42.308 0.00 0.00 42.02 4.30
104 105 6.551601 CCTCAACTATACAATGACTAGGAGGT 59.448 42.308 0.00 0.00 33.95 3.85
105 106 7.348080 TCAACTATACAATGACTAGGAGGTG 57.652 40.000 0.00 0.00 0.00 4.00
106 107 6.323996 TCAACTATACAATGACTAGGAGGTGG 59.676 42.308 0.00 0.00 0.00 4.61
107 108 5.148502 ACTATACAATGACTAGGAGGTGGG 58.851 45.833 0.00 0.00 0.00 4.61
108 109 0.912486 ACAATGACTAGGAGGTGGGC 59.088 55.000 0.00 0.00 0.00 5.36
109 110 0.181350 CAATGACTAGGAGGTGGGCC 59.819 60.000 0.00 0.00 0.00 5.80
110 111 1.338136 AATGACTAGGAGGTGGGCCG 61.338 60.000 0.00 0.00 40.50 6.13
111 112 3.155167 GACTAGGAGGTGGGCCGG 61.155 72.222 0.00 0.00 40.50 6.13
112 113 3.674050 GACTAGGAGGTGGGCCGGA 62.674 68.421 5.05 0.00 40.50 5.14
113 114 3.155167 CTAGGAGGTGGGCCGGAC 61.155 72.222 5.05 0.00 40.50 4.79
114 115 3.680196 TAGGAGGTGGGCCGGACT 61.680 66.667 7.57 0.00 40.50 3.85
115 116 2.294170 CTAGGAGGTGGGCCGGACTA 62.294 65.000 7.57 0.00 40.50 2.59
116 117 1.661990 TAGGAGGTGGGCCGGACTAT 61.662 60.000 7.57 0.00 40.50 2.12
117 118 1.152398 GGAGGTGGGCCGGACTATA 60.152 63.158 7.57 0.00 40.50 1.31
118 119 1.470165 GGAGGTGGGCCGGACTATAC 61.470 65.000 7.57 4.03 40.50 1.47
119 120 0.757935 GAGGTGGGCCGGACTATACA 60.758 60.000 7.57 0.00 40.50 2.29
120 121 0.325860 AGGTGGGCCGGACTATACAA 60.326 55.000 7.57 0.00 40.50 2.41
121 122 0.763035 GGTGGGCCGGACTATACAAT 59.237 55.000 7.57 0.00 0.00 2.71
122 123 1.972795 GGTGGGCCGGACTATACAATA 59.027 52.381 7.57 0.00 0.00 1.90
123 124 2.570302 GGTGGGCCGGACTATACAATAT 59.430 50.000 7.57 0.00 0.00 1.28
124 125 3.770933 GGTGGGCCGGACTATACAATATA 59.229 47.826 7.57 0.00 0.00 0.86
125 126 4.382362 GGTGGGCCGGACTATACAATATAC 60.382 50.000 7.57 0.00 0.00 1.47
126 127 4.221262 GTGGGCCGGACTATACAATATACA 59.779 45.833 7.57 0.00 0.00 2.29
127 128 5.027460 TGGGCCGGACTATACAATATACAT 58.973 41.667 7.57 0.00 0.00 2.29
128 129 5.105106 TGGGCCGGACTATACAATATACATG 60.105 44.000 7.57 0.00 0.00 3.21
129 130 4.809426 GGCCGGACTATACAATATACATGC 59.191 45.833 5.05 0.00 0.00 4.06
130 131 5.416083 GCCGGACTATACAATATACATGCA 58.584 41.667 5.05 0.00 0.00 3.96
131 132 5.291128 GCCGGACTATACAATATACATGCAC 59.709 44.000 5.05 0.00 0.00 4.57
132 133 6.394809 CCGGACTATACAATATACATGCACA 58.605 40.000 0.00 0.00 0.00 4.57
133 134 6.871492 CCGGACTATACAATATACATGCACAA 59.129 38.462 0.00 0.00 0.00 3.33
134 135 7.386573 CCGGACTATACAATATACATGCACAAA 59.613 37.037 0.00 0.00 0.00 2.83
135 136 8.221100 CGGACTATACAATATACATGCACAAAC 58.779 37.037 0.00 0.00 0.00 2.93
136 137 8.504005 GGACTATACAATATACATGCACAAACC 58.496 37.037 0.00 0.00 0.00 3.27
137 138 8.972458 ACTATACAATATACATGCACAAACCA 57.028 30.769 0.00 0.00 0.00 3.67
138 139 9.573166 ACTATACAATATACATGCACAAACCAT 57.427 29.630 0.00 0.00 0.00 3.55
148 149 7.167924 ACATGCACAAACCATATATTCAACA 57.832 32.000 0.00 0.00 0.00 3.33
149 150 7.609960 ACATGCACAAACCATATATTCAACAA 58.390 30.769 0.00 0.00 0.00 2.83
150 151 8.259411 ACATGCACAAACCATATATTCAACAAT 58.741 29.630 0.00 0.00 0.00 2.71
151 152 8.757789 CATGCACAAACCATATATTCAACAATC 58.242 33.333 0.00 0.00 0.00 2.67
152 153 7.264221 TGCACAAACCATATATTCAACAATCC 58.736 34.615 0.00 0.00 0.00 3.01
153 154 6.701400 GCACAAACCATATATTCAACAATCCC 59.299 38.462 0.00 0.00 0.00 3.85
154 155 7.417797 GCACAAACCATATATTCAACAATCCCT 60.418 37.037 0.00 0.00 0.00 4.20
155 156 8.477256 CACAAACCATATATTCAACAATCCCTT 58.523 33.333 0.00 0.00 0.00 3.95
156 157 8.695456 ACAAACCATATATTCAACAATCCCTTC 58.305 33.333 0.00 0.00 0.00 3.46
157 158 8.917088 CAAACCATATATTCAACAATCCCTTCT 58.083 33.333 0.00 0.00 0.00 2.85
158 159 8.697507 AACCATATATTCAACAATCCCTTCTC 57.302 34.615 0.00 0.00 0.00 2.87
159 160 7.234355 ACCATATATTCAACAATCCCTTCTCC 58.766 38.462 0.00 0.00 0.00 3.71
160 161 7.074237 ACCATATATTCAACAATCCCTTCTCCT 59.926 37.037 0.00 0.00 0.00 3.69
161 162 7.609532 CCATATATTCAACAATCCCTTCTCCTC 59.390 40.741 0.00 0.00 0.00 3.71
162 163 3.334583 TTCAACAATCCCTTCTCCTCG 57.665 47.619 0.00 0.00 0.00 4.63
163 164 2.257207 TCAACAATCCCTTCTCCTCGT 58.743 47.619 0.00 0.00 0.00 4.18
164 165 2.233922 TCAACAATCCCTTCTCCTCGTC 59.766 50.000 0.00 0.00 0.00 4.20
165 166 2.234908 CAACAATCCCTTCTCCTCGTCT 59.765 50.000 0.00 0.00 0.00 4.18
166 167 2.104170 ACAATCCCTTCTCCTCGTCTC 58.896 52.381 0.00 0.00 0.00 3.36
167 168 2.291930 ACAATCCCTTCTCCTCGTCTCT 60.292 50.000 0.00 0.00 0.00 3.10
168 169 3.053544 ACAATCCCTTCTCCTCGTCTCTA 60.054 47.826 0.00 0.00 0.00 2.43
169 170 2.713863 TCCCTTCTCCTCGTCTCTAC 57.286 55.000 0.00 0.00 0.00 2.59
170 171 1.212441 TCCCTTCTCCTCGTCTCTACC 59.788 57.143 0.00 0.00 0.00 3.18
171 172 1.301423 CCTTCTCCTCGTCTCTACCG 58.699 60.000 0.00 0.00 0.00 4.02
172 173 0.658897 CTTCTCCTCGTCTCTACCGC 59.341 60.000 0.00 0.00 0.00 5.68
173 174 0.747283 TTCTCCTCGTCTCTACCGCC 60.747 60.000 0.00 0.00 0.00 6.13
174 175 2.513204 TCCTCGTCTCTACCGCCG 60.513 66.667 0.00 0.00 0.00 6.46
175 176 2.513204 CCTCGTCTCTACCGCCGA 60.513 66.667 0.00 0.00 0.00 5.54
176 177 1.892862 CCTCGTCTCTACCGCCGAT 60.893 63.158 0.00 0.00 0.00 4.18
177 178 1.280142 CTCGTCTCTACCGCCGATG 59.720 63.158 0.00 0.00 0.00 3.84
178 179 1.153309 TCGTCTCTACCGCCGATGA 60.153 57.895 0.00 0.00 0.00 2.92
179 180 0.534427 TCGTCTCTACCGCCGATGAT 60.534 55.000 0.00 0.00 0.00 2.45
180 181 0.110147 CGTCTCTACCGCCGATGATC 60.110 60.000 0.00 0.00 0.00 2.92
181 182 0.110147 GTCTCTACCGCCGATGATCG 60.110 60.000 8.05 8.05 40.07 3.69
182 183 1.442857 CTCTACCGCCGATGATCGC 60.443 63.158 9.74 4.31 38.82 4.58
183 184 2.430921 CTACCGCCGATGATCGCC 60.431 66.667 9.74 0.00 38.82 5.54
184 185 4.337060 TACCGCCGATGATCGCCG 62.337 66.667 11.44 11.44 40.57 6.46
223 224 3.480133 CCGCCCCCTTCCTCGAAT 61.480 66.667 0.00 0.00 0.00 3.34
224 225 2.590092 CGCCCCCTTCCTCGAATT 59.410 61.111 0.00 0.00 0.00 2.17
225 226 1.819632 CGCCCCCTTCCTCGAATTG 60.820 63.158 0.00 0.00 0.00 2.32
226 227 1.607612 GCCCCCTTCCTCGAATTGA 59.392 57.895 0.00 0.00 0.00 2.57
227 228 0.464554 GCCCCCTTCCTCGAATTGAG 60.465 60.000 0.00 0.00 44.83 3.02
237 238 2.803451 CTCGAATTGAGGACGAAGAGG 58.197 52.381 0.00 0.00 41.29 3.69
238 239 1.135083 TCGAATTGAGGACGAAGAGGC 60.135 52.381 0.00 0.00 33.20 4.70
239 240 1.281899 GAATTGAGGACGAAGAGGCG 58.718 55.000 0.00 0.00 37.29 5.52
240 241 0.895530 AATTGAGGACGAAGAGGCGA 59.104 50.000 0.00 0.00 34.83 5.54
241 242 0.173708 ATTGAGGACGAAGAGGCGAC 59.826 55.000 0.00 0.00 34.83 5.19
242 243 2.100603 GAGGACGAAGAGGCGACG 59.899 66.667 0.00 0.00 34.83 5.12
243 244 2.672307 AGGACGAAGAGGCGACGT 60.672 61.111 0.00 0.00 42.84 4.34
244 245 2.504244 GGACGAAGAGGCGACGTG 60.504 66.667 0.00 0.00 40.29 4.49
245 246 2.559840 GACGAAGAGGCGACGTGA 59.440 61.111 0.00 0.00 40.29 4.35
246 247 1.512310 GACGAAGAGGCGACGTGAG 60.512 63.158 0.00 0.00 40.29 3.51
257 258 2.851801 ACGTGAGTGGAGGAGGGA 59.148 61.111 0.00 0.00 46.97 4.20
258 259 1.388531 ACGTGAGTGGAGGAGGGAT 59.611 57.895 0.00 0.00 46.97 3.85
259 260 0.972983 ACGTGAGTGGAGGAGGGATG 60.973 60.000 0.00 0.00 46.97 3.51
260 261 0.684479 CGTGAGTGGAGGAGGGATGA 60.684 60.000 0.00 0.00 0.00 2.92
261 262 1.118838 GTGAGTGGAGGAGGGATGAG 58.881 60.000 0.00 0.00 0.00 2.90
262 263 0.689080 TGAGTGGAGGAGGGATGAGC 60.689 60.000 0.00 0.00 0.00 4.26
263 264 1.743321 GAGTGGAGGAGGGATGAGCG 61.743 65.000 0.00 0.00 0.00 5.03
264 265 2.444706 TGGAGGAGGGATGAGCGG 60.445 66.667 0.00 0.00 0.00 5.52
265 266 3.237741 GGAGGAGGGATGAGCGGG 61.238 72.222 0.00 0.00 0.00 6.13
266 267 3.237741 GAGGAGGGATGAGCGGGG 61.238 72.222 0.00 0.00 0.00 5.73
267 268 4.888325 AGGAGGGATGAGCGGGGG 62.888 72.222 0.00 0.00 0.00 5.40
268 269 4.880426 GGAGGGATGAGCGGGGGA 62.880 72.222 0.00 0.00 0.00 4.81
269 270 2.527875 GAGGGATGAGCGGGGGAT 60.528 66.667 0.00 0.00 0.00 3.85
270 271 2.039405 AGGGATGAGCGGGGGATT 60.039 61.111 0.00 0.00 0.00 3.01
271 272 2.118233 GAGGGATGAGCGGGGGATTC 62.118 65.000 0.00 0.00 0.00 2.52
272 273 2.031163 GGATGAGCGGGGGATTCG 59.969 66.667 0.00 0.00 0.00 3.34
273 274 2.507854 GGATGAGCGGGGGATTCGA 61.508 63.158 0.00 0.00 0.00 3.71
274 275 1.674057 GATGAGCGGGGGATTCGAT 59.326 57.895 0.00 0.00 0.00 3.59
275 276 0.671781 GATGAGCGGGGGATTCGATG 60.672 60.000 0.00 0.00 0.00 3.84
276 277 1.121407 ATGAGCGGGGGATTCGATGA 61.121 55.000 0.00 0.00 0.00 2.92
277 278 1.121407 TGAGCGGGGGATTCGATGAT 61.121 55.000 0.00 0.00 0.00 2.45
278 279 0.671781 GAGCGGGGGATTCGATGATG 60.672 60.000 0.00 0.00 0.00 3.07
279 280 2.328099 GCGGGGGATTCGATGATGC 61.328 63.158 0.00 0.00 0.00 3.91
280 281 1.672356 CGGGGGATTCGATGATGCC 60.672 63.158 0.00 0.00 36.84 4.40
282 283 1.672356 GGGGATTCGATGATGCCCG 60.672 63.158 10.55 0.00 46.02 6.13
283 284 1.371183 GGGATTCGATGATGCCCGA 59.629 57.895 0.00 0.00 31.86 5.14
284 285 0.671781 GGGATTCGATGATGCCCGAG 60.672 60.000 0.00 0.00 36.11 4.63
285 286 0.671781 GGATTCGATGATGCCCGAGG 60.672 60.000 0.00 0.00 36.11 4.63
297 298 3.443045 CCGAGGCGCTTTTGGCAT 61.443 61.111 7.64 0.00 41.91 4.40
298 299 2.112198 CCGAGGCGCTTTTGGCATA 61.112 57.895 7.64 0.00 41.91 3.14
299 300 1.447317 CCGAGGCGCTTTTGGCATAT 61.447 55.000 7.64 0.00 41.91 1.78
300 301 0.381801 CGAGGCGCTTTTGGCATATT 59.618 50.000 7.64 0.00 41.91 1.28
301 302 1.202290 CGAGGCGCTTTTGGCATATTT 60.202 47.619 7.64 0.00 41.91 1.40
302 303 2.463876 GAGGCGCTTTTGGCATATTTC 58.536 47.619 7.64 0.00 41.91 2.17
303 304 1.136891 AGGCGCTTTTGGCATATTTCC 59.863 47.619 7.64 0.00 41.91 3.13
304 305 1.134848 GGCGCTTTTGGCATATTTCCA 60.135 47.619 7.64 0.00 41.91 3.53
305 306 1.926510 GCGCTTTTGGCATATTTCCAC 59.073 47.619 0.00 0.00 41.91 4.02
306 307 2.184448 CGCTTTTGGCATATTTCCACG 58.816 47.619 0.00 0.00 41.91 4.94
307 308 2.539476 GCTTTTGGCATATTTCCACGG 58.461 47.619 0.00 0.00 41.35 4.94
308 309 2.539476 CTTTTGGCATATTTCCACGGC 58.461 47.619 0.00 0.00 32.45 5.68
309 310 0.453793 TTTGGCATATTTCCACGGCG 59.546 50.000 4.80 4.80 32.45 6.46
310 311 1.380403 TTGGCATATTTCCACGGCGG 61.380 55.000 13.24 0.00 32.45 6.13
311 312 2.331451 GCATATTTCCACGGCGGC 59.669 61.111 13.24 0.00 33.14 6.53
312 313 2.631428 CATATTTCCACGGCGGCG 59.369 61.111 31.06 31.06 33.14 6.46
313 314 2.590575 ATATTTCCACGGCGGCGG 60.591 61.111 35.05 22.67 33.14 6.13
336 337 4.308458 CGGTTCGCCACCTGTCCA 62.308 66.667 2.53 0.00 44.69 4.02
337 338 2.358737 GGTTCGCCACCTGTCCAG 60.359 66.667 0.00 0.00 43.29 3.86
338 339 2.741092 GTTCGCCACCTGTCCAGA 59.259 61.111 0.00 0.00 0.00 3.86
339 340 1.070786 GTTCGCCACCTGTCCAGAA 59.929 57.895 0.00 0.00 0.00 3.02
340 341 1.070786 TTCGCCACCTGTCCAGAAC 59.929 57.895 0.00 0.00 0.00 3.01
341 342 2.709125 TTCGCCACCTGTCCAGAACG 62.709 60.000 0.00 0.00 0.00 3.95
342 343 2.358737 GCCACCTGTCCAGAACGG 60.359 66.667 0.00 0.00 0.00 4.44
343 344 3.148084 CCACCTGTCCAGAACGGT 58.852 61.111 0.00 0.00 35.88 4.83
344 345 1.004918 CCACCTGTCCAGAACGGTC 60.005 63.158 0.00 0.00 34.09 4.79
345 346 1.372997 CACCTGTCCAGAACGGTCG 60.373 63.158 0.00 0.00 34.09 4.79
346 347 2.261671 CCTGTCCAGAACGGTCGG 59.738 66.667 5.15 5.15 35.57 4.79
347 348 2.571216 CCTGTCCAGAACGGTCGGT 61.571 63.158 10.43 0.00 35.57 4.69
348 349 1.080705 CTGTCCAGAACGGTCGGTC 60.081 63.158 10.43 0.00 35.57 4.79
349 350 1.802337 CTGTCCAGAACGGTCGGTCA 61.802 60.000 11.11 10.10 33.52 4.02
350 351 1.364901 GTCCAGAACGGTCGGTCAA 59.635 57.895 11.11 0.00 33.52 3.18
351 352 0.942884 GTCCAGAACGGTCGGTCAAC 60.943 60.000 11.11 2.57 33.52 3.18
352 353 1.068417 CCAGAACGGTCGGTCAACA 59.932 57.895 11.11 0.00 33.52 3.33
353 354 1.219522 CCAGAACGGTCGGTCAACAC 61.220 60.000 11.11 0.00 33.52 3.32
354 355 0.528901 CAGAACGGTCGGTCAACACA 60.529 55.000 11.11 0.00 33.52 3.72
355 356 0.391597 AGAACGGTCGGTCAACACAT 59.608 50.000 11.11 0.00 33.52 3.21
356 357 0.511221 GAACGGTCGGTCAACACATG 59.489 55.000 3.31 0.00 0.00 3.21
357 358 0.882927 AACGGTCGGTCAACACATGG 60.883 55.000 0.00 0.00 0.00 3.66
358 359 1.301401 CGGTCGGTCAACACATGGT 60.301 57.895 0.00 0.00 0.00 3.55
359 360 1.289109 CGGTCGGTCAACACATGGTC 61.289 60.000 0.00 0.00 0.00 4.02
360 361 0.250124 GGTCGGTCAACACATGGTCA 60.250 55.000 0.00 0.00 0.00 4.02
361 362 1.588674 GTCGGTCAACACATGGTCAA 58.411 50.000 0.00 0.00 0.00 3.18
362 363 1.944024 GTCGGTCAACACATGGTCAAA 59.056 47.619 0.00 0.00 0.00 2.69
363 364 2.032030 GTCGGTCAACACATGGTCAAAG 60.032 50.000 0.00 0.00 0.00 2.77
364 365 2.158885 TCGGTCAACACATGGTCAAAGA 60.159 45.455 0.00 0.00 0.00 2.52
365 366 2.224079 CGGTCAACACATGGTCAAAGAG 59.776 50.000 0.00 0.00 0.00 2.85
366 367 2.030805 GGTCAACACATGGTCAAAGAGC 60.031 50.000 0.00 0.00 0.00 4.09
367 368 2.030805 GTCAACACATGGTCAAAGAGCC 60.031 50.000 0.00 0.00 0.00 4.70
368 369 2.158623 TCAACACATGGTCAAAGAGCCT 60.159 45.455 0.00 0.00 0.00 4.58
369 370 1.901591 ACACATGGTCAAAGAGCCTG 58.098 50.000 0.00 0.00 33.29 4.85
370 371 1.143684 ACACATGGTCAAAGAGCCTGT 59.856 47.619 0.00 2.10 38.88 4.00
371 372 2.371841 ACACATGGTCAAAGAGCCTGTA 59.628 45.455 6.77 0.00 36.95 2.74
372 373 2.744202 CACATGGTCAAAGAGCCTGTAC 59.256 50.000 6.77 0.00 36.95 2.90
373 374 2.371841 ACATGGTCAAAGAGCCTGTACA 59.628 45.455 5.54 0.00 37.20 2.90
374 375 2.543777 TGGTCAAAGAGCCTGTACAC 57.456 50.000 0.00 0.00 0.00 2.90
375 376 1.765904 TGGTCAAAGAGCCTGTACACA 59.234 47.619 0.00 0.00 0.00 3.72
376 377 2.143925 GGTCAAAGAGCCTGTACACAC 58.856 52.381 0.00 0.00 0.00 3.82
377 378 2.143925 GTCAAAGAGCCTGTACACACC 58.856 52.381 0.00 0.00 0.00 4.16
378 379 1.148310 CAAAGAGCCTGTACACACCG 58.852 55.000 0.00 0.00 0.00 4.94
379 380 0.602905 AAAGAGCCTGTACACACCGC 60.603 55.000 0.00 0.00 0.00 5.68
380 381 1.754380 AAGAGCCTGTACACACCGCA 61.754 55.000 0.00 0.00 0.00 5.69
381 382 1.079127 GAGCCTGTACACACCGCAT 60.079 57.895 0.00 0.00 0.00 4.73
382 383 0.174845 GAGCCTGTACACACCGCATA 59.825 55.000 0.00 0.00 0.00 3.14
383 384 0.108329 AGCCTGTACACACCGCATAC 60.108 55.000 0.00 0.00 0.00 2.39
384 385 1.418342 GCCTGTACACACCGCATACG 61.418 60.000 0.00 0.00 39.67 3.06
385 386 1.418342 CCTGTACACACCGCATACGC 61.418 60.000 0.00 0.00 38.22 4.42
386 387 0.734597 CTGTACACACCGCATACGCA 60.735 55.000 0.00 0.00 38.40 5.24
387 388 1.009903 TGTACACACCGCATACGCAC 61.010 55.000 0.00 0.00 38.40 5.34
388 389 1.009903 GTACACACCGCATACGCACA 61.010 55.000 0.00 0.00 38.40 4.57
389 390 0.319641 TACACACCGCATACGCACAA 60.320 50.000 0.00 0.00 38.40 3.33
390 391 1.154488 CACACCGCATACGCACAAC 60.154 57.895 0.00 0.00 38.40 3.32
391 392 1.595655 ACACCGCATACGCACAACA 60.596 52.632 0.00 0.00 38.40 3.33
392 393 1.132436 CACCGCATACGCACAACAG 59.868 57.895 0.00 0.00 38.40 3.16
393 394 1.301401 ACCGCATACGCACAACAGT 60.301 52.632 0.00 0.00 38.40 3.55
394 395 1.132436 CCGCATACGCACAACAGTG 59.868 57.895 0.00 0.00 38.40 3.66
395 396 1.288419 CCGCATACGCACAACAGTGA 61.288 55.000 0.00 0.00 38.40 3.41
396 397 0.721154 CGCATACGCACAACAGTGAT 59.279 50.000 0.00 0.00 38.40 3.06
397 398 1.128507 CGCATACGCACAACAGTGATT 59.871 47.619 0.00 0.00 38.40 2.57
398 399 2.508867 GCATACGCACAACAGTGATTG 58.491 47.619 0.00 0.32 38.36 2.67
399 400 2.095768 GCATACGCACAACAGTGATTGT 60.096 45.455 0.00 1.00 43.67 2.71
400 401 3.124466 GCATACGCACAACAGTGATTGTA 59.876 43.478 0.00 0.00 40.89 2.41
401 402 4.201812 GCATACGCACAACAGTGATTGTAT 60.202 41.667 0.00 2.18 40.89 2.29
402 403 5.673568 GCATACGCACAACAGTGATTGTATT 60.674 40.000 0.00 0.00 40.89 1.89
403 404 4.829064 ACGCACAACAGTGATTGTATTT 57.171 36.364 0.00 0.00 40.89 1.40
404 405 5.181690 ACGCACAACAGTGATTGTATTTT 57.818 34.783 0.00 0.00 40.89 1.82
405 406 5.212194 ACGCACAACAGTGATTGTATTTTC 58.788 37.500 0.00 0.00 40.89 2.29
406 407 5.211454 CGCACAACAGTGATTGTATTTTCA 58.789 37.500 0.00 0.00 40.89 2.69
407 408 5.115472 CGCACAACAGTGATTGTATTTTCAC 59.885 40.000 0.00 0.00 40.89 3.18
408 409 5.115472 GCACAACAGTGATTGTATTTTCACG 59.885 40.000 0.00 0.00 45.42 4.35
409 410 6.198687 CACAACAGTGATTGTATTTTCACGT 58.801 36.000 0.00 0.00 45.42 4.49
410 411 6.356977 CACAACAGTGATTGTATTTTCACGTC 59.643 38.462 0.00 0.00 45.42 4.34
411 412 5.607119 ACAGTGATTGTATTTTCACGTCC 57.393 39.130 0.00 0.00 45.42 4.79
412 413 4.454504 ACAGTGATTGTATTTTCACGTCCC 59.545 41.667 0.00 0.00 45.42 4.46
413 414 4.454161 CAGTGATTGTATTTTCACGTCCCA 59.546 41.667 0.00 0.00 45.42 4.37
414 415 5.123820 CAGTGATTGTATTTTCACGTCCCAT 59.876 40.000 0.00 0.00 45.42 4.00
415 416 5.354234 AGTGATTGTATTTTCACGTCCCATC 59.646 40.000 0.00 0.00 45.42 3.51
416 417 5.123186 GTGATTGTATTTTCACGTCCCATCA 59.877 40.000 0.00 0.00 33.57 3.07
417 418 5.885352 TGATTGTATTTTCACGTCCCATCAT 59.115 36.000 0.00 0.00 0.00 2.45
418 419 7.011950 GTGATTGTATTTTCACGTCCCATCATA 59.988 37.037 0.00 0.00 33.57 2.15
419 420 7.719193 TGATTGTATTTTCACGTCCCATCATAT 59.281 33.333 0.00 0.00 0.00 1.78
420 421 9.214957 GATTGTATTTTCACGTCCCATCATATA 57.785 33.333 0.00 0.00 0.00 0.86
421 422 7.956420 TGTATTTTCACGTCCCATCATATAC 57.044 36.000 0.00 0.00 0.00 1.47
422 423 7.501844 TGTATTTTCACGTCCCATCATATACA 58.498 34.615 0.00 0.00 0.00 2.29
423 424 8.154203 TGTATTTTCACGTCCCATCATATACAT 58.846 33.333 0.00 0.00 0.00 2.29
424 425 6.859420 TTTTCACGTCCCATCATATACATG 57.141 37.500 0.00 0.00 0.00 3.21
425 426 5.799827 TTCACGTCCCATCATATACATGA 57.200 39.130 0.00 0.00 45.15 3.07
436 437 5.782893 TCATATACATGATGACGGTCACA 57.217 39.130 13.92 13.48 36.22 3.58
437 438 6.155475 TCATATACATGATGACGGTCACAA 57.845 37.500 13.92 4.98 36.22 3.33
438 439 6.578023 TCATATACATGATGACGGTCACAAA 58.422 36.000 13.92 2.29 36.22 2.83
439 440 7.044798 TCATATACATGATGACGGTCACAAAA 58.955 34.615 13.92 0.00 36.22 2.44
440 441 3.896648 ACATGATGACGGTCACAAAAC 57.103 42.857 13.92 3.93 0.00 2.43
441 442 2.223144 ACATGATGACGGTCACAAAACG 59.777 45.455 13.92 3.04 0.00 3.60
442 443 1.942677 TGATGACGGTCACAAAACGT 58.057 45.000 13.92 0.00 44.35 3.99
443 444 3.095102 TGATGACGGTCACAAAACGTA 57.905 42.857 13.92 0.00 41.40 3.57
444 445 3.655486 TGATGACGGTCACAAAACGTAT 58.345 40.909 13.92 0.00 41.40 3.06
445 446 4.059511 TGATGACGGTCACAAAACGTATT 58.940 39.130 13.92 0.00 41.40 1.89
446 447 4.512198 TGATGACGGTCACAAAACGTATTT 59.488 37.500 13.92 0.00 41.40 1.40
447 448 4.455917 TGACGGTCACAAAACGTATTTC 57.544 40.909 6.76 0.00 41.40 2.17
448 449 3.869832 TGACGGTCACAAAACGTATTTCA 59.130 39.130 6.76 0.00 41.40 2.69
449 450 4.331992 TGACGGTCACAAAACGTATTTCAA 59.668 37.500 6.76 0.00 41.40 2.69
450 451 5.163784 TGACGGTCACAAAACGTATTTCAAA 60.164 36.000 6.76 0.00 41.40 2.69
451 452 5.267776 ACGGTCACAAAACGTATTTCAAAG 58.732 37.500 0.00 0.00 39.30 2.77
452 453 5.163733 ACGGTCACAAAACGTATTTCAAAGT 60.164 36.000 0.00 0.00 39.30 2.66
453 454 5.740099 CGGTCACAAAACGTATTTCAAAGTT 59.260 36.000 0.00 0.00 0.00 2.66
454 455 6.075780 CGGTCACAAAACGTATTTCAAAGTTC 60.076 38.462 0.00 0.00 0.00 3.01
455 456 6.748198 GGTCACAAAACGTATTTCAAAGTTCA 59.252 34.615 0.00 0.00 0.00 3.18
456 457 7.434013 GGTCACAAAACGTATTTCAAAGTTCAT 59.566 33.333 0.00 0.00 0.00 2.57
457 458 8.803799 GTCACAAAACGTATTTCAAAGTTCATT 58.196 29.630 0.00 0.00 0.00 2.57
458 459 8.802856 TCACAAAACGTATTTCAAAGTTCATTG 58.197 29.630 0.00 0.00 0.00 2.82
459 460 8.802856 CACAAAACGTATTTCAAAGTTCATTGA 58.197 29.630 0.00 0.00 37.53 2.57
460 461 8.803799 ACAAAACGTATTTCAAAGTTCATTGAC 58.196 29.630 0.00 0.00 38.95 3.18
461 462 8.802856 CAAAACGTATTTCAAAGTTCATTGACA 58.197 29.630 0.00 0.00 38.95 3.58
462 463 8.918961 AAACGTATTTCAAAGTTCATTGACAA 57.081 26.923 0.00 0.00 38.95 3.18
463 464 9.528018 AAACGTATTTCAAAGTTCATTGACAAT 57.472 25.926 0.00 0.00 38.95 2.71
464 465 9.528018 AACGTATTTCAAAGTTCATTGACAATT 57.472 25.926 0.00 0.00 38.95 2.32
465 466 9.528018 ACGTATTTCAAAGTTCATTGACAATTT 57.472 25.926 0.00 0.00 38.95 1.82
472 473 9.515020 TCAAAGTTCATTGACAATTTTAGTGAC 57.485 29.630 0.00 0.00 34.50 3.67
473 474 8.755018 CAAAGTTCATTGACAATTTTAGTGACC 58.245 33.333 0.00 0.00 31.84 4.02
474 475 7.823745 AGTTCATTGACAATTTTAGTGACCT 57.176 32.000 0.00 0.00 0.00 3.85
475 476 8.237811 AGTTCATTGACAATTTTAGTGACCTT 57.762 30.769 0.00 0.00 0.00 3.50
476 477 9.349713 AGTTCATTGACAATTTTAGTGACCTTA 57.650 29.630 0.00 0.00 0.00 2.69
477 478 9.959749 GTTCATTGACAATTTTAGTGACCTTAA 57.040 29.630 0.00 0.00 0.00 1.85
502 503 9.588096 AAATGTATTTGTCTCCTAAGAAAACCT 57.412 29.630 0.00 0.00 28.00 3.50
552 553 9.546428 CCAATTCCCAACCATTTTATATTTCTC 57.454 33.333 0.00 0.00 0.00 2.87
555 556 9.713684 ATTCCCAACCATTTTATATTTCTCTGA 57.286 29.630 0.00 0.00 0.00 3.27
556 557 8.519799 TCCCAACCATTTTATATTTCTCTGAC 57.480 34.615 0.00 0.00 0.00 3.51
557 558 8.112822 TCCCAACCATTTTATATTTCTCTGACA 58.887 33.333 0.00 0.00 0.00 3.58
706 710 0.966920 GAAGGTTCTCGTCTCCACCA 59.033 55.000 0.00 0.00 0.00 4.17
762 766 2.159612 CGTGTCGTCCGTCTAAATCTGA 60.160 50.000 0.00 0.00 0.00 3.27
763 767 3.427243 GTGTCGTCCGTCTAAATCTGAG 58.573 50.000 0.00 0.00 0.00 3.35
769 773 0.876342 CGTCTAAATCTGAGGCGCCC 60.876 60.000 26.15 15.80 34.93 6.13
791 795 1.073216 CTGCACCGCGTCTACAAGAG 61.073 60.000 4.92 0.00 0.00 2.85
816 820 2.160171 CAACCCAACCTCCTCCCCA 61.160 63.158 0.00 0.00 0.00 4.96
819 823 2.763902 CCAACCTCCTCCCCAACC 59.236 66.667 0.00 0.00 0.00 3.77
824 828 4.410400 CTCCTCCCCAACCCGCAC 62.410 72.222 0.00 0.00 0.00 5.34
825 829 4.974438 TCCTCCCCAACCCGCACT 62.974 66.667 0.00 0.00 0.00 4.40
1071 1092 2.436292 CTGCTGCTGCTGACCCTC 60.436 66.667 17.00 0.00 40.01 4.30
1404 1425 3.518998 CGCGACGACTGATCCCCT 61.519 66.667 0.00 0.00 0.00 4.79
1405 1426 2.413765 GCGACGACTGATCCCCTC 59.586 66.667 0.00 0.00 0.00 4.30
1412 1433 2.525381 CTGATCCCCTCCTCCCCG 60.525 72.222 0.00 0.00 0.00 5.73
1484 1508 5.045215 CCGCGTTTATGTTCCTAGATACAA 58.955 41.667 4.92 0.00 0.00 2.41
1485 1509 5.521010 CCGCGTTTATGTTCCTAGATACAAA 59.479 40.000 4.92 0.00 0.00 2.83
1499 1523 3.379372 AGATACAAACCTGTGATGCATGC 59.621 43.478 11.82 11.82 36.96 4.06
1543 1567 2.350522 AGTGTGGATGTTTGAGATCGC 58.649 47.619 0.00 0.00 0.00 4.58
1765 1789 1.527034 TCTCTTGTCACATGCTTGCC 58.473 50.000 0.00 0.00 0.00 4.52
1784 1808 1.831106 CCAAATTAAGTTCAGGCCCCC 59.169 52.381 0.00 0.00 0.00 5.40
1785 1809 2.534990 CAAATTAAGTTCAGGCCCCCA 58.465 47.619 0.00 0.00 0.00 4.96
1787 1811 1.681229 ATTAAGTTCAGGCCCCCAGA 58.319 50.000 0.00 0.00 0.00 3.86
1788 1812 1.681229 TTAAGTTCAGGCCCCCAGAT 58.319 50.000 0.00 0.00 0.00 2.90
1789 1813 0.918983 TAAGTTCAGGCCCCCAGATG 59.081 55.000 0.00 0.00 0.00 2.90
1790 1814 2.440980 GTTCAGGCCCCCAGATGC 60.441 66.667 0.00 0.00 0.00 3.91
1791 1815 2.614969 TTCAGGCCCCCAGATGCT 60.615 61.111 0.00 0.00 0.00 3.79
1792 1816 2.240918 TTCAGGCCCCCAGATGCTT 61.241 57.895 0.00 0.00 0.00 3.91
1793 1817 1.803453 TTCAGGCCCCCAGATGCTTT 61.803 55.000 0.00 0.00 0.00 3.51
1794 1818 2.056223 CAGGCCCCCAGATGCTTTG 61.056 63.158 0.00 0.00 0.00 2.77
1795 1819 3.464494 GGCCCCCAGATGCTTTGC 61.464 66.667 0.00 0.00 0.00 3.68
1796 1820 3.464494 GCCCCCAGATGCTTTGCC 61.464 66.667 0.00 0.00 0.00 4.52
1797 1821 2.361771 CCCCCAGATGCTTTGCCT 59.638 61.111 0.00 0.00 0.00 4.75
1798 1822 1.305549 CCCCCAGATGCTTTGCCTT 60.306 57.895 0.00 0.00 0.00 4.35
1799 1823 1.610554 CCCCCAGATGCTTTGCCTTG 61.611 60.000 0.00 0.00 0.00 3.61
1800 1824 1.610554 CCCCAGATGCTTTGCCTTGG 61.611 60.000 0.00 0.00 0.00 3.61
1801 1825 0.901580 CCCAGATGCTTTGCCTTGGT 60.902 55.000 0.00 0.00 0.00 3.67
1802 1826 1.616725 CCCAGATGCTTTGCCTTGGTA 60.617 52.381 0.00 0.00 0.00 3.25
1849 1873 1.818674 GCCCTGGTTGTGAAAGGTATG 59.181 52.381 0.00 0.00 0.00 2.39
1860 1884 3.769844 GTGAAAGGTATGGAGTCTCTGGA 59.230 47.826 0.00 0.00 0.00 3.86
1861 1885 4.223032 GTGAAAGGTATGGAGTCTCTGGAA 59.777 45.833 0.00 0.00 0.00 3.53
1863 1887 5.104776 TGAAAGGTATGGAGTCTCTGGAATG 60.105 44.000 0.00 0.00 0.00 2.67
1864 1888 4.000928 AGGTATGGAGTCTCTGGAATGT 57.999 45.455 0.00 0.00 0.00 2.71
1979 2093 7.275123 GGAAGAGACTTGTAATTTACAGTACCG 59.725 40.741 9.10 1.43 40.24 4.02
2079 2194 1.446016 ACCTGGGTCAGCCTTTAGTT 58.554 50.000 0.00 0.00 34.45 2.24
2087 2202 7.062749 TGGGTCAGCCTTTAGTTATAGTATG 57.937 40.000 0.00 0.00 34.45 2.39
2105 2220 4.702131 AGTATGGGATTTGAGTGTTGAAGC 59.298 41.667 0.00 0.00 0.00 3.86
2106 2221 2.942804 TGGGATTTGAGTGTTGAAGCA 58.057 42.857 0.00 0.00 0.00 3.91
2107 2222 2.886523 TGGGATTTGAGTGTTGAAGCAG 59.113 45.455 0.00 0.00 0.00 4.24
2108 2223 2.229784 GGGATTTGAGTGTTGAAGCAGG 59.770 50.000 0.00 0.00 0.00 4.85
2109 2224 2.352127 GGATTTGAGTGTTGAAGCAGGC 60.352 50.000 0.00 0.00 0.00 4.85
2110 2225 1.761449 TTTGAGTGTTGAAGCAGGCA 58.239 45.000 0.00 0.00 0.00 4.75
2111 2226 1.761449 TTGAGTGTTGAAGCAGGCAA 58.239 45.000 0.00 0.00 0.00 4.52
2132 2247 5.287226 CAAGCAGCTTCAGAAAACTTGATT 58.713 37.500 4.07 0.00 36.08 2.57
2199 2315 2.886862 TTTGTGTGGGCTGATTGTTG 57.113 45.000 0.00 0.00 0.00 3.33
2262 2380 7.545265 TGATGTTTGCAGTGCTTTATTATTTCC 59.455 33.333 17.60 0.00 0.00 3.13
2407 2568 1.792367 GTCCGCTTCAAACAATTTGCC 59.208 47.619 0.00 0.00 40.43 4.52
2440 2601 6.481644 CCTCAAGTATCTAAATCCTGCAGTTC 59.518 42.308 13.81 0.00 0.00 3.01
2471 2632 4.104897 GGAAGTATCTAAATCCTGGGCCTT 59.895 45.833 4.53 0.00 0.00 4.35
2506 2667 6.732531 TTGATCATTGATGTGTTCTCTGTC 57.267 37.500 3.32 0.00 0.00 3.51
2534 2695 2.695666 CCTGAAATCTCTCGCCCTTCTA 59.304 50.000 0.00 0.00 0.00 2.10
2546 2707 4.394729 TCGCCCTTCTAATTGAAAAGTGT 58.605 39.130 0.00 0.00 33.79 3.55
2547 2708 4.215399 TCGCCCTTCTAATTGAAAAGTGTG 59.785 41.667 0.00 0.00 33.79 3.82
2550 2711 5.475564 GCCCTTCTAATTGAAAAGTGTGGTA 59.524 40.000 0.00 0.00 33.79 3.25
2562 2723 8.177119 TGAAAAGTGTGGTAAGAATTTATGCT 57.823 30.769 0.00 0.00 0.00 3.79
2574 2735 9.899226 GTAAGAATTTATGCTCACTTGTCTTTT 57.101 29.630 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.504010 CGAGTAGCATTGCCAAAATATTCGT 60.504 40.000 4.70 0.00 0.00 3.85
1 2 4.905866 CGAGTAGCATTGCCAAAATATTCG 59.094 41.667 4.70 5.35 0.00 3.34
2 3 6.060028 TCGAGTAGCATTGCCAAAATATTC 57.940 37.500 4.70 0.00 0.00 1.75
3 4 6.039717 ACATCGAGTAGCATTGCCAAAATATT 59.960 34.615 4.70 0.00 0.00 1.28
4 5 5.532406 ACATCGAGTAGCATTGCCAAAATAT 59.468 36.000 4.70 0.00 0.00 1.28
5 6 4.881273 ACATCGAGTAGCATTGCCAAAATA 59.119 37.500 4.70 0.00 0.00 1.40
6 7 3.696051 ACATCGAGTAGCATTGCCAAAAT 59.304 39.130 4.70 0.00 0.00 1.82
7 8 3.081061 ACATCGAGTAGCATTGCCAAAA 58.919 40.909 4.70 0.00 0.00 2.44
8 9 2.710377 ACATCGAGTAGCATTGCCAAA 58.290 42.857 4.70 0.00 0.00 3.28
9 10 2.401583 ACATCGAGTAGCATTGCCAA 57.598 45.000 4.70 0.00 0.00 4.52
10 11 3.751479 ATACATCGAGTAGCATTGCCA 57.249 42.857 4.70 0.00 35.85 4.92
11 12 4.058124 TCAATACATCGAGTAGCATTGCC 58.942 43.478 4.70 0.00 35.85 4.52
12 13 5.852005 GATCAATACATCGAGTAGCATTGC 58.148 41.667 0.00 0.00 35.85 3.56
23 24 3.061295 GCTATGCACCGATCAATACATCG 59.939 47.826 0.00 0.00 44.45 3.84
24 25 3.061295 CGCTATGCACCGATCAATACATC 59.939 47.826 0.00 0.00 0.00 3.06
25 26 2.995939 CGCTATGCACCGATCAATACAT 59.004 45.455 0.00 0.00 0.00 2.29
26 27 2.403259 CGCTATGCACCGATCAATACA 58.597 47.619 0.00 0.00 0.00 2.29
27 28 1.126846 GCGCTATGCACCGATCAATAC 59.873 52.381 0.00 0.00 45.45 1.89
28 29 1.428448 GCGCTATGCACCGATCAATA 58.572 50.000 0.00 0.00 45.45 1.90
29 30 2.238353 GCGCTATGCACCGATCAAT 58.762 52.632 0.00 0.00 45.45 2.57
30 31 3.717899 GCGCTATGCACCGATCAA 58.282 55.556 0.00 0.00 45.45 2.57
39 40 3.702330 TCCATATATACGTGCGCTATGC 58.298 45.455 9.73 0.00 46.70 3.14
40 41 4.921547 ACTCCATATATACGTGCGCTATG 58.078 43.478 9.73 6.27 0.00 2.23
41 42 5.587443 TGTACTCCATATATACGTGCGCTAT 59.413 40.000 9.73 0.17 0.00 2.97
42 43 4.937015 TGTACTCCATATATACGTGCGCTA 59.063 41.667 9.73 0.00 0.00 4.26
43 44 3.754850 TGTACTCCATATATACGTGCGCT 59.245 43.478 9.73 0.00 0.00 5.92
44 45 4.087510 TGTACTCCATATATACGTGCGC 57.912 45.455 0.00 0.00 0.00 6.09
45 46 5.093457 CCTTGTACTCCATATATACGTGCG 58.907 45.833 0.00 0.00 0.00 5.34
46 47 5.862323 CACCTTGTACTCCATATATACGTGC 59.138 44.000 0.00 0.00 0.00 5.34
47 48 6.387465 CCACCTTGTACTCCATATATACGTG 58.613 44.000 0.00 0.00 0.00 4.49
48 49 5.479375 CCCACCTTGTACTCCATATATACGT 59.521 44.000 0.00 0.00 0.00 3.57
49 50 5.623824 GCCCACCTTGTACTCCATATATACG 60.624 48.000 0.00 0.00 0.00 3.06
50 51 5.338137 GGCCCACCTTGTACTCCATATATAC 60.338 48.000 0.00 0.00 0.00 1.47
51 52 4.781087 GGCCCACCTTGTACTCCATATATA 59.219 45.833 0.00 0.00 0.00 0.86
52 53 3.587506 GGCCCACCTTGTACTCCATATAT 59.412 47.826 0.00 0.00 0.00 0.86
53 54 2.976882 GGCCCACCTTGTACTCCATATA 59.023 50.000 0.00 0.00 0.00 0.86
54 55 1.774856 GGCCCACCTTGTACTCCATAT 59.225 52.381 0.00 0.00 0.00 1.78
55 56 1.209621 GGCCCACCTTGTACTCCATA 58.790 55.000 0.00 0.00 0.00 2.74
56 57 0.844661 TGGCCCACCTTGTACTCCAT 60.845 55.000 0.00 0.00 36.63 3.41
57 58 1.462432 TGGCCCACCTTGTACTCCA 60.462 57.895 0.00 0.00 36.63 3.86
58 59 1.002502 GTGGCCCACCTTGTACTCC 60.003 63.158 1.17 0.00 36.63 3.85
59 60 0.109723 TTGTGGCCCACCTTGTACTC 59.890 55.000 12.25 0.00 36.63 2.59
60 61 0.179001 GTTGTGGCCCACCTTGTACT 60.179 55.000 12.25 0.00 36.63 2.73
61 62 1.176619 GGTTGTGGCCCACCTTGTAC 61.177 60.000 12.25 1.80 36.63 2.90
62 63 1.151908 GGTTGTGGCCCACCTTGTA 59.848 57.895 12.25 0.00 36.63 2.41
63 64 2.123468 GGTTGTGGCCCACCTTGT 60.123 61.111 12.25 0.00 36.63 3.16
64 65 1.903404 GAGGTTGTGGCCCACCTTG 60.903 63.158 17.32 0.00 36.63 3.61
65 66 1.943730 TTGAGGTTGTGGCCCACCTT 61.944 55.000 17.32 0.00 36.63 3.50
66 67 2.391130 TTGAGGTTGTGGCCCACCT 61.391 57.895 16.46 16.46 36.63 4.00
67 68 2.197324 TTGAGGTTGTGGCCCACC 59.803 61.111 12.25 3.64 32.73 4.61
68 69 0.109723 TAGTTGAGGTTGTGGCCCAC 59.890 55.000 7.01 7.01 34.56 4.61
69 70 1.072266 ATAGTTGAGGTTGTGGCCCA 58.928 50.000 0.00 0.00 0.00 5.36
70 71 2.026636 TGTATAGTTGAGGTTGTGGCCC 60.027 50.000 0.00 0.00 0.00 5.80
71 72 3.343941 TGTATAGTTGAGGTTGTGGCC 57.656 47.619 0.00 0.00 0.00 5.36
72 73 4.941263 TCATTGTATAGTTGAGGTTGTGGC 59.059 41.667 0.00 0.00 0.00 5.01
73 74 6.173339 AGTCATTGTATAGTTGAGGTTGTGG 58.827 40.000 0.00 0.00 0.00 4.17
74 75 7.492669 CCTAGTCATTGTATAGTTGAGGTTGTG 59.507 40.741 0.00 0.00 0.00 3.33
75 76 7.399191 TCCTAGTCATTGTATAGTTGAGGTTGT 59.601 37.037 0.00 0.00 0.00 3.32
76 77 7.782049 TCCTAGTCATTGTATAGTTGAGGTTG 58.218 38.462 0.00 0.00 0.00 3.77
77 78 7.070074 CCTCCTAGTCATTGTATAGTTGAGGTT 59.930 40.741 0.00 0.00 31.94 3.50
78 79 6.551601 CCTCCTAGTCATTGTATAGTTGAGGT 59.448 42.308 0.00 0.00 31.94 3.85
79 80 6.551601 ACCTCCTAGTCATTGTATAGTTGAGG 59.448 42.308 0.00 0.00 40.19 3.86
80 81 7.429633 CACCTCCTAGTCATTGTATAGTTGAG 58.570 42.308 0.00 0.00 0.00 3.02
81 82 6.323996 CCACCTCCTAGTCATTGTATAGTTGA 59.676 42.308 0.00 0.00 0.00 3.18
82 83 6.463049 CCCACCTCCTAGTCATTGTATAGTTG 60.463 46.154 0.00 0.00 0.00 3.16
83 84 5.602978 CCCACCTCCTAGTCATTGTATAGTT 59.397 44.000 0.00 0.00 0.00 2.24
84 85 5.148502 CCCACCTCCTAGTCATTGTATAGT 58.851 45.833 0.00 0.00 0.00 2.12
85 86 4.021016 GCCCACCTCCTAGTCATTGTATAG 60.021 50.000 0.00 0.00 0.00 1.31
86 87 3.901844 GCCCACCTCCTAGTCATTGTATA 59.098 47.826 0.00 0.00 0.00 1.47
87 88 2.706190 GCCCACCTCCTAGTCATTGTAT 59.294 50.000 0.00 0.00 0.00 2.29
88 89 2.116238 GCCCACCTCCTAGTCATTGTA 58.884 52.381 0.00 0.00 0.00 2.41
89 90 0.912486 GCCCACCTCCTAGTCATTGT 59.088 55.000 0.00 0.00 0.00 2.71
90 91 0.181350 GGCCCACCTCCTAGTCATTG 59.819 60.000 0.00 0.00 0.00 2.82
91 92 1.338136 CGGCCCACCTCCTAGTCATT 61.338 60.000 0.00 0.00 0.00 2.57
92 93 1.762460 CGGCCCACCTCCTAGTCAT 60.762 63.158 0.00 0.00 0.00 3.06
93 94 2.363795 CGGCCCACCTCCTAGTCA 60.364 66.667 0.00 0.00 0.00 3.41
94 95 3.155167 CCGGCCCACCTCCTAGTC 61.155 72.222 0.00 0.00 0.00 2.59
95 96 3.680196 TCCGGCCCACCTCCTAGT 61.680 66.667 0.00 0.00 0.00 2.57
96 97 2.294170 TAGTCCGGCCCACCTCCTAG 62.294 65.000 0.00 0.00 0.00 3.02
97 98 1.661990 ATAGTCCGGCCCACCTCCTA 61.662 60.000 0.00 0.00 0.00 2.94
98 99 1.661990 TATAGTCCGGCCCACCTCCT 61.662 60.000 0.00 0.00 0.00 3.69
99 100 1.152398 TATAGTCCGGCCCACCTCC 60.152 63.158 0.00 0.00 0.00 4.30
100 101 0.757935 TGTATAGTCCGGCCCACCTC 60.758 60.000 0.00 0.00 0.00 3.85
101 102 0.325860 TTGTATAGTCCGGCCCACCT 60.326 55.000 0.00 0.00 0.00 4.00
102 103 0.763035 ATTGTATAGTCCGGCCCACC 59.237 55.000 0.00 0.00 0.00 4.61
103 104 3.975168 ATATTGTATAGTCCGGCCCAC 57.025 47.619 0.00 0.00 0.00 4.61
104 105 4.418359 TGTATATTGTATAGTCCGGCCCA 58.582 43.478 0.00 0.00 0.00 5.36
105 106 5.357257 CATGTATATTGTATAGTCCGGCCC 58.643 45.833 0.00 0.00 0.00 5.80
106 107 4.809426 GCATGTATATTGTATAGTCCGGCC 59.191 45.833 0.00 0.00 0.00 6.13
107 108 5.291128 GTGCATGTATATTGTATAGTCCGGC 59.709 44.000 0.00 0.00 0.00 6.13
108 109 6.394809 TGTGCATGTATATTGTATAGTCCGG 58.605 40.000 0.00 0.00 0.00 5.14
109 110 7.883229 TTGTGCATGTATATTGTATAGTCCG 57.117 36.000 0.00 0.00 0.00 4.79
110 111 8.504005 GGTTTGTGCATGTATATTGTATAGTCC 58.496 37.037 0.00 0.00 0.00 3.85
111 112 9.051679 TGGTTTGTGCATGTATATTGTATAGTC 57.948 33.333 0.00 0.00 0.00 2.59
112 113 8.972458 TGGTTTGTGCATGTATATTGTATAGT 57.028 30.769 0.00 0.00 0.00 2.12
122 123 8.911965 TGTTGAATATATGGTTTGTGCATGTAT 58.088 29.630 0.00 0.00 0.00 2.29
123 124 8.286191 TGTTGAATATATGGTTTGTGCATGTA 57.714 30.769 0.00 0.00 0.00 2.29
124 125 7.167924 TGTTGAATATATGGTTTGTGCATGT 57.832 32.000 0.00 0.00 0.00 3.21
125 126 8.651391 ATTGTTGAATATATGGTTTGTGCATG 57.349 30.769 0.00 0.00 0.00 4.06
126 127 7.927629 GGATTGTTGAATATATGGTTTGTGCAT 59.072 33.333 0.00 0.00 0.00 3.96
127 128 7.264221 GGATTGTTGAATATATGGTTTGTGCA 58.736 34.615 0.00 0.00 0.00 4.57
128 129 6.701400 GGGATTGTTGAATATATGGTTTGTGC 59.299 38.462 0.00 0.00 0.00 4.57
129 130 8.010733 AGGGATTGTTGAATATATGGTTTGTG 57.989 34.615 0.00 0.00 0.00 3.33
130 131 8.608185 AAGGGATTGTTGAATATATGGTTTGT 57.392 30.769 0.00 0.00 0.00 2.83
131 132 8.917088 AGAAGGGATTGTTGAATATATGGTTTG 58.083 33.333 0.00 0.00 0.00 2.93
132 133 9.136323 GAGAAGGGATTGTTGAATATATGGTTT 57.864 33.333 0.00 0.00 0.00 3.27
133 134 7.725844 GGAGAAGGGATTGTTGAATATATGGTT 59.274 37.037 0.00 0.00 0.00 3.67
134 135 7.074237 AGGAGAAGGGATTGTTGAATATATGGT 59.926 37.037 0.00 0.00 0.00 3.55
135 136 7.465116 AGGAGAAGGGATTGTTGAATATATGG 58.535 38.462 0.00 0.00 0.00 2.74
136 137 7.332926 CGAGGAGAAGGGATTGTTGAATATATG 59.667 40.741 0.00 0.00 0.00 1.78
137 138 7.016661 ACGAGGAGAAGGGATTGTTGAATATAT 59.983 37.037 0.00 0.00 0.00 0.86
138 139 6.326583 ACGAGGAGAAGGGATTGTTGAATATA 59.673 38.462 0.00 0.00 0.00 0.86
139 140 5.131142 ACGAGGAGAAGGGATTGTTGAATAT 59.869 40.000 0.00 0.00 0.00 1.28
140 141 4.469945 ACGAGGAGAAGGGATTGTTGAATA 59.530 41.667 0.00 0.00 0.00 1.75
141 142 3.264450 ACGAGGAGAAGGGATTGTTGAAT 59.736 43.478 0.00 0.00 0.00 2.57
142 143 2.637872 ACGAGGAGAAGGGATTGTTGAA 59.362 45.455 0.00 0.00 0.00 2.69
143 144 2.233922 GACGAGGAGAAGGGATTGTTGA 59.766 50.000 0.00 0.00 0.00 3.18
144 145 2.234908 AGACGAGGAGAAGGGATTGTTG 59.765 50.000 0.00 0.00 0.00 3.33
145 146 2.498078 GAGACGAGGAGAAGGGATTGTT 59.502 50.000 0.00 0.00 0.00 2.83
146 147 2.104170 GAGACGAGGAGAAGGGATTGT 58.896 52.381 0.00 0.00 0.00 2.71
147 148 2.383855 AGAGACGAGGAGAAGGGATTG 58.616 52.381 0.00 0.00 0.00 2.67
148 149 2.838637 AGAGACGAGGAGAAGGGATT 57.161 50.000 0.00 0.00 0.00 3.01
149 150 2.158579 GGTAGAGACGAGGAGAAGGGAT 60.159 54.545 0.00 0.00 0.00 3.85
150 151 1.212441 GGTAGAGACGAGGAGAAGGGA 59.788 57.143 0.00 0.00 0.00 4.20
151 152 1.682740 GGTAGAGACGAGGAGAAGGG 58.317 60.000 0.00 0.00 0.00 3.95
152 153 1.301423 CGGTAGAGACGAGGAGAAGG 58.699 60.000 0.00 0.00 0.00 3.46
153 154 0.658897 GCGGTAGAGACGAGGAGAAG 59.341 60.000 0.00 0.00 0.00 2.85
154 155 0.747283 GGCGGTAGAGACGAGGAGAA 60.747 60.000 0.00 0.00 0.00 2.87
155 156 1.153208 GGCGGTAGAGACGAGGAGA 60.153 63.158 0.00 0.00 0.00 3.71
156 157 2.535788 CGGCGGTAGAGACGAGGAG 61.536 68.421 0.00 0.00 0.00 3.69
157 158 2.321263 ATCGGCGGTAGAGACGAGGA 62.321 60.000 7.21 0.00 38.85 3.71
158 159 1.892862 ATCGGCGGTAGAGACGAGG 60.893 63.158 7.21 0.00 38.85 4.63
159 160 1.158484 TCATCGGCGGTAGAGACGAG 61.158 60.000 7.21 0.00 38.85 4.18
160 161 0.534427 ATCATCGGCGGTAGAGACGA 60.534 55.000 7.21 0.00 39.85 4.20
161 162 0.110147 GATCATCGGCGGTAGAGACG 60.110 60.000 7.21 0.00 0.00 4.18
162 163 0.110147 CGATCATCGGCGGTAGAGAC 60.110 60.000 7.21 1.28 36.00 3.36
163 164 1.853114 GCGATCATCGGCGGTAGAGA 61.853 60.000 9.59 0.00 40.84 3.10
164 165 1.442857 GCGATCATCGGCGGTAGAG 60.443 63.158 9.59 0.00 40.84 2.43
165 166 2.643272 GCGATCATCGGCGGTAGA 59.357 61.111 9.59 2.87 40.84 2.59
206 207 3.043999 AATTCGAGGAAGGGGGCGG 62.044 63.158 0.00 0.00 0.00 6.13
207 208 1.819632 CAATTCGAGGAAGGGGGCG 60.820 63.158 0.00 0.00 0.00 6.13
208 209 0.464554 CTCAATTCGAGGAAGGGGGC 60.465 60.000 0.00 0.00 38.18 5.80
209 210 3.788672 CTCAATTCGAGGAAGGGGG 57.211 57.895 0.00 0.00 38.18 5.40
217 218 2.803451 CCTCTTCGTCCTCAATTCGAG 58.197 52.381 0.00 0.00 41.89 4.04
218 219 1.135083 GCCTCTTCGTCCTCAATTCGA 60.135 52.381 0.00 0.00 0.00 3.71
219 220 1.281899 GCCTCTTCGTCCTCAATTCG 58.718 55.000 0.00 0.00 0.00 3.34
220 221 1.135083 TCGCCTCTTCGTCCTCAATTC 60.135 52.381 0.00 0.00 0.00 2.17
221 222 0.895530 TCGCCTCTTCGTCCTCAATT 59.104 50.000 0.00 0.00 0.00 2.32
222 223 0.173708 GTCGCCTCTTCGTCCTCAAT 59.826 55.000 0.00 0.00 0.00 2.57
223 224 1.585006 GTCGCCTCTTCGTCCTCAA 59.415 57.895 0.00 0.00 0.00 3.02
224 225 2.687805 CGTCGCCTCTTCGTCCTCA 61.688 63.158 0.00 0.00 0.00 3.86
225 226 2.100603 CGTCGCCTCTTCGTCCTC 59.899 66.667 0.00 0.00 0.00 3.71
226 227 2.672307 ACGTCGCCTCTTCGTCCT 60.672 61.111 0.00 0.00 32.26 3.85
227 228 2.504244 CACGTCGCCTCTTCGTCC 60.504 66.667 0.00 0.00 35.62 4.79
228 229 1.512310 CTCACGTCGCCTCTTCGTC 60.512 63.158 0.00 0.00 35.62 4.20
229 230 2.259439 ACTCACGTCGCCTCTTCGT 61.259 57.895 0.00 0.00 38.34 3.85
230 231 1.797933 CACTCACGTCGCCTCTTCG 60.798 63.158 0.00 0.00 0.00 3.79
231 232 1.444553 CCACTCACGTCGCCTCTTC 60.445 63.158 0.00 0.00 0.00 2.87
232 233 1.867919 CTCCACTCACGTCGCCTCTT 61.868 60.000 0.00 0.00 0.00 2.85
233 234 2.282251 TCCACTCACGTCGCCTCT 60.282 61.111 0.00 0.00 0.00 3.69
234 235 2.179517 CTCCACTCACGTCGCCTC 59.820 66.667 0.00 0.00 0.00 4.70
235 236 3.374402 CCTCCACTCACGTCGCCT 61.374 66.667 0.00 0.00 0.00 5.52
236 237 3.343788 CTCCTCCACTCACGTCGCC 62.344 68.421 0.00 0.00 0.00 5.54
237 238 2.179517 CTCCTCCACTCACGTCGC 59.820 66.667 0.00 0.00 0.00 5.19
238 239 2.701780 CCCTCCTCCACTCACGTCG 61.702 68.421 0.00 0.00 0.00 5.12
239 240 0.684805 ATCCCTCCTCCACTCACGTC 60.685 60.000 0.00 0.00 0.00 4.34
240 241 0.972983 CATCCCTCCTCCACTCACGT 60.973 60.000 0.00 0.00 0.00 4.49
241 242 0.684479 TCATCCCTCCTCCACTCACG 60.684 60.000 0.00 0.00 0.00 4.35
242 243 1.118838 CTCATCCCTCCTCCACTCAC 58.881 60.000 0.00 0.00 0.00 3.51
243 244 0.689080 GCTCATCCCTCCTCCACTCA 60.689 60.000 0.00 0.00 0.00 3.41
244 245 1.743321 CGCTCATCCCTCCTCCACTC 61.743 65.000 0.00 0.00 0.00 3.51
245 246 1.760086 CGCTCATCCCTCCTCCACT 60.760 63.158 0.00 0.00 0.00 4.00
246 247 2.801631 CCGCTCATCCCTCCTCCAC 61.802 68.421 0.00 0.00 0.00 4.02
247 248 2.444706 CCGCTCATCCCTCCTCCA 60.445 66.667 0.00 0.00 0.00 3.86
248 249 3.237741 CCCGCTCATCCCTCCTCC 61.238 72.222 0.00 0.00 0.00 4.30
249 250 3.237741 CCCCGCTCATCCCTCCTC 61.238 72.222 0.00 0.00 0.00 3.71
250 251 4.888325 CCCCCGCTCATCCCTCCT 62.888 72.222 0.00 0.00 0.00 3.69
251 252 4.880426 TCCCCCGCTCATCCCTCC 62.880 72.222 0.00 0.00 0.00 4.30
252 253 2.118233 GAATCCCCCGCTCATCCCTC 62.118 65.000 0.00 0.00 0.00 4.30
253 254 2.039405 AATCCCCCGCTCATCCCT 60.039 61.111 0.00 0.00 0.00 4.20
254 255 2.432123 GAATCCCCCGCTCATCCC 59.568 66.667 0.00 0.00 0.00 3.85
255 256 1.831652 ATCGAATCCCCCGCTCATCC 61.832 60.000 0.00 0.00 0.00 3.51
256 257 0.671781 CATCGAATCCCCCGCTCATC 60.672 60.000 0.00 0.00 0.00 2.92
257 258 1.121407 TCATCGAATCCCCCGCTCAT 61.121 55.000 0.00 0.00 0.00 2.90
258 259 1.121407 ATCATCGAATCCCCCGCTCA 61.121 55.000 0.00 0.00 0.00 4.26
259 260 0.671781 CATCATCGAATCCCCCGCTC 60.672 60.000 0.00 0.00 0.00 5.03
260 261 1.372683 CATCATCGAATCCCCCGCT 59.627 57.895 0.00 0.00 0.00 5.52
261 262 2.328099 GCATCATCGAATCCCCCGC 61.328 63.158 0.00 0.00 0.00 6.13
262 263 1.672356 GGCATCATCGAATCCCCCG 60.672 63.158 0.00 0.00 0.00 5.73
263 264 1.303643 GGGCATCATCGAATCCCCC 60.304 63.158 0.00 0.00 0.00 5.40
264 265 1.672356 CGGGCATCATCGAATCCCC 60.672 63.158 0.00 0.00 33.43 4.81
265 266 0.671781 CTCGGGCATCATCGAATCCC 60.672 60.000 0.00 0.00 34.87 3.85
266 267 0.671781 CCTCGGGCATCATCGAATCC 60.672 60.000 0.00 0.00 34.87 3.01
267 268 2.832931 CCTCGGGCATCATCGAATC 58.167 57.895 0.00 0.00 34.87 2.52
287 288 2.539476 CCGTGGAAATATGCCAAAAGC 58.461 47.619 0.00 0.00 44.14 3.51
288 289 2.539476 GCCGTGGAAATATGCCAAAAG 58.461 47.619 0.00 0.00 37.12 2.27
289 290 1.135257 CGCCGTGGAAATATGCCAAAA 60.135 47.619 0.00 0.00 37.12 2.44
290 291 0.453793 CGCCGTGGAAATATGCCAAA 59.546 50.000 0.00 0.00 37.12 3.28
291 292 1.380403 CCGCCGTGGAAATATGCCAA 61.380 55.000 0.00 0.00 42.00 4.52
292 293 1.821759 CCGCCGTGGAAATATGCCA 60.822 57.895 0.00 0.00 42.00 4.92
293 294 3.030652 CCGCCGTGGAAATATGCC 58.969 61.111 0.00 0.00 42.00 4.40
294 295 2.331451 GCCGCCGTGGAAATATGC 59.669 61.111 0.88 0.00 42.00 3.14
295 296 2.631428 CGCCGCCGTGGAAATATG 59.369 61.111 0.88 0.00 42.00 1.78
296 297 2.590575 CCGCCGCCGTGGAAATAT 60.591 61.111 0.88 0.00 42.83 1.28
321 322 1.070786 TTCTGGACAGGTGGCGAAC 59.929 57.895 0.00 0.00 0.00 3.95
322 323 1.070786 GTTCTGGACAGGTGGCGAA 59.929 57.895 0.00 0.00 0.00 4.70
323 324 2.741092 GTTCTGGACAGGTGGCGA 59.259 61.111 0.00 0.00 0.00 5.54
324 325 2.738521 CGTTCTGGACAGGTGGCG 60.739 66.667 0.00 0.00 0.00 5.69
325 326 2.358737 CCGTTCTGGACAGGTGGC 60.359 66.667 0.00 0.00 42.00 5.01
326 327 1.004918 GACCGTTCTGGACAGGTGG 60.005 63.158 7.23 2.23 42.00 4.61
327 328 1.372997 CGACCGTTCTGGACAGGTG 60.373 63.158 7.23 0.00 42.00 4.00
328 329 2.571216 CCGACCGTTCTGGACAGGT 61.571 63.158 2.85 2.85 42.00 4.00
329 330 2.261671 CCGACCGTTCTGGACAGG 59.738 66.667 0.00 0.00 42.00 4.00
330 331 1.080705 GACCGACCGTTCTGGACAG 60.081 63.158 0.00 0.00 42.00 3.51
331 332 1.393487 TTGACCGACCGTTCTGGACA 61.393 55.000 0.00 0.00 42.00 4.02
332 333 0.942884 GTTGACCGACCGTTCTGGAC 60.943 60.000 0.00 0.00 42.00 4.02
333 334 1.364901 GTTGACCGACCGTTCTGGA 59.635 57.895 0.00 0.00 42.00 3.86
334 335 1.068417 TGTTGACCGACCGTTCTGG 59.932 57.895 0.00 0.00 46.41 3.86
335 336 0.528901 TGTGTTGACCGACCGTTCTG 60.529 55.000 0.00 0.00 0.00 3.02
336 337 0.391597 ATGTGTTGACCGACCGTTCT 59.608 50.000 0.00 0.00 0.00 3.01
337 338 0.511221 CATGTGTTGACCGACCGTTC 59.489 55.000 0.00 0.00 0.00 3.95
338 339 0.882927 CCATGTGTTGACCGACCGTT 60.883 55.000 0.00 0.00 0.00 4.44
339 340 1.301401 CCATGTGTTGACCGACCGT 60.301 57.895 0.00 0.00 0.00 4.83
340 341 1.289109 GACCATGTGTTGACCGACCG 61.289 60.000 0.00 0.00 0.00 4.79
341 342 0.250124 TGACCATGTGTTGACCGACC 60.250 55.000 0.00 0.00 0.00 4.79
342 343 1.588674 TTGACCATGTGTTGACCGAC 58.411 50.000 0.00 0.00 0.00 4.79
343 344 2.158885 TCTTTGACCATGTGTTGACCGA 60.159 45.455 0.00 0.00 0.00 4.69
344 345 2.217750 TCTTTGACCATGTGTTGACCG 58.782 47.619 0.00 0.00 0.00 4.79
345 346 2.030805 GCTCTTTGACCATGTGTTGACC 60.031 50.000 0.00 0.00 0.00 4.02
346 347 2.030805 GGCTCTTTGACCATGTGTTGAC 60.031 50.000 0.00 0.00 0.00 3.18
347 348 2.158623 AGGCTCTTTGACCATGTGTTGA 60.159 45.455 0.00 0.00 0.00 3.18
348 349 2.030540 CAGGCTCTTTGACCATGTGTTG 60.031 50.000 0.00 0.00 0.00 3.33
349 350 2.233271 CAGGCTCTTTGACCATGTGTT 58.767 47.619 0.00 0.00 0.00 3.32
350 351 1.143684 ACAGGCTCTTTGACCATGTGT 59.856 47.619 0.00 0.00 0.00 3.72
351 352 1.901591 ACAGGCTCTTTGACCATGTG 58.098 50.000 0.00 0.00 0.00 3.21
352 353 2.371841 TGTACAGGCTCTTTGACCATGT 59.628 45.455 0.00 0.00 0.00 3.21
353 354 2.744202 GTGTACAGGCTCTTTGACCATG 59.256 50.000 0.00 0.00 0.00 3.66
354 355 2.371841 TGTGTACAGGCTCTTTGACCAT 59.628 45.455 0.00 0.00 0.00 3.55
355 356 1.765904 TGTGTACAGGCTCTTTGACCA 59.234 47.619 0.00 0.00 0.00 4.02
356 357 2.143925 GTGTGTACAGGCTCTTTGACC 58.856 52.381 0.00 0.00 0.00 4.02
357 358 2.143925 GGTGTGTACAGGCTCTTTGAC 58.856 52.381 0.00 0.00 0.00 3.18
358 359 1.270094 CGGTGTGTACAGGCTCTTTGA 60.270 52.381 0.00 0.00 0.00 2.69
359 360 1.148310 CGGTGTGTACAGGCTCTTTG 58.852 55.000 0.00 0.00 0.00 2.77
360 361 0.602905 GCGGTGTGTACAGGCTCTTT 60.603 55.000 0.00 0.00 0.00 2.52
361 362 1.004918 GCGGTGTGTACAGGCTCTT 60.005 57.895 0.00 0.00 0.00 2.85
362 363 1.544825 ATGCGGTGTGTACAGGCTCT 61.545 55.000 0.00 0.00 0.00 4.09
363 364 0.174845 TATGCGGTGTGTACAGGCTC 59.825 55.000 0.00 0.00 0.00 4.70
364 365 0.108329 GTATGCGGTGTGTACAGGCT 60.108 55.000 0.00 0.00 0.00 4.58
365 366 1.418342 CGTATGCGGTGTGTACAGGC 61.418 60.000 0.00 0.00 0.00 4.85
366 367 1.418342 GCGTATGCGGTGTGTACAGG 61.418 60.000 5.09 0.00 38.78 4.00
367 368 1.995991 GCGTATGCGGTGTGTACAG 59.004 57.895 5.09 0.00 38.78 2.74
368 369 4.172346 GCGTATGCGGTGTGTACA 57.828 55.556 5.09 0.00 38.78 2.90
377 378 5.482038 ACAATCACTGTTGTGCGTATGCG 62.482 47.826 1.78 0.00 43.49 4.73
378 379 2.095768 ACAATCACTGTTGTGCGTATGC 60.096 45.455 0.00 0.00 43.49 3.14
379 380 3.811722 ACAATCACTGTTGTGCGTATG 57.188 42.857 0.00 0.00 43.49 2.39
380 381 6.494893 AAATACAATCACTGTTGTGCGTAT 57.505 33.333 2.76 0.00 42.02 3.06
381 382 5.933187 AAATACAATCACTGTTGTGCGTA 57.067 34.783 2.76 0.00 42.02 4.42
382 383 4.829064 AAATACAATCACTGTTGTGCGT 57.171 36.364 2.76 0.00 42.02 5.24
383 384 5.115472 GTGAAAATACAATCACTGTTGTGCG 59.885 40.000 2.76 0.00 42.02 5.34
384 385 5.115472 CGTGAAAATACAATCACTGTTGTGC 59.885 40.000 2.76 0.00 42.93 4.57
385 386 6.198687 ACGTGAAAATACAATCACTGTTGTG 58.801 36.000 2.76 0.00 42.93 3.33
386 387 6.371809 ACGTGAAAATACAATCACTGTTGT 57.628 33.333 4.62 0.00 42.93 3.32
387 388 5.851177 GGACGTGAAAATACAATCACTGTTG 59.149 40.000 0.00 0.00 42.93 3.33
388 389 5.048991 GGGACGTGAAAATACAATCACTGTT 60.049 40.000 0.00 0.00 42.93 3.16
389 390 4.454504 GGGACGTGAAAATACAATCACTGT 59.545 41.667 0.00 4.34 42.93 3.55
390 391 4.454161 TGGGACGTGAAAATACAATCACTG 59.546 41.667 0.00 1.62 42.93 3.66
391 392 4.647611 TGGGACGTGAAAATACAATCACT 58.352 39.130 0.00 0.00 42.93 3.41
392 393 5.123186 TGATGGGACGTGAAAATACAATCAC 59.877 40.000 0.00 0.00 41.95 3.06
393 394 5.249420 TGATGGGACGTGAAAATACAATCA 58.751 37.500 0.00 0.00 0.00 2.57
394 395 5.811399 TGATGGGACGTGAAAATACAATC 57.189 39.130 0.00 0.00 0.00 2.67
395 396 8.999431 GTATATGATGGGACGTGAAAATACAAT 58.001 33.333 0.00 0.00 0.00 2.71
396 397 7.988028 TGTATATGATGGGACGTGAAAATACAA 59.012 33.333 0.00 0.00 0.00 2.41
397 398 7.501844 TGTATATGATGGGACGTGAAAATACA 58.498 34.615 0.00 0.00 0.00 2.29
398 399 7.956420 TGTATATGATGGGACGTGAAAATAC 57.044 36.000 0.00 0.00 0.00 1.89
399 400 8.371699 TCATGTATATGATGGGACGTGAAAATA 58.628 33.333 0.00 0.00 38.37 1.40
400 401 7.223584 TCATGTATATGATGGGACGTGAAAAT 58.776 34.615 0.00 0.00 38.37 1.82
401 402 6.587273 TCATGTATATGATGGGACGTGAAAA 58.413 36.000 0.00 0.00 38.37 2.29
402 403 6.168270 TCATGTATATGATGGGACGTGAAA 57.832 37.500 0.00 0.00 38.37 2.69
403 404 5.799827 TCATGTATATGATGGGACGTGAA 57.200 39.130 0.00 0.00 38.37 3.18
414 415 5.782893 TGTGACCGTCATCATGTATATGA 57.217 39.130 4.13 4.49 46.67 2.15
415 416 6.843069 TTTGTGACCGTCATCATGTATATG 57.157 37.500 4.13 0.00 35.57 1.78
416 417 6.019075 CGTTTTGTGACCGTCATCATGTATAT 60.019 38.462 4.13 0.00 0.00 0.86
417 418 5.289917 CGTTTTGTGACCGTCATCATGTATA 59.710 40.000 4.13 0.00 0.00 1.47
418 419 4.092821 CGTTTTGTGACCGTCATCATGTAT 59.907 41.667 4.13 0.00 0.00 2.29
419 420 3.430556 CGTTTTGTGACCGTCATCATGTA 59.569 43.478 4.13 0.00 0.00 2.29
420 421 2.223144 CGTTTTGTGACCGTCATCATGT 59.777 45.455 4.13 0.00 0.00 3.21
421 422 2.223144 ACGTTTTGTGACCGTCATCATG 59.777 45.455 4.13 0.00 0.00 3.07
422 423 2.489971 ACGTTTTGTGACCGTCATCAT 58.510 42.857 4.13 0.00 0.00 2.45
423 424 1.942677 ACGTTTTGTGACCGTCATCA 58.057 45.000 4.13 2.36 0.00 3.07
424 425 4.657075 AATACGTTTTGTGACCGTCATC 57.343 40.909 4.13 0.00 36.12 2.92
425 426 4.512198 TGAAATACGTTTTGTGACCGTCAT 59.488 37.500 4.13 0.00 36.12 3.06
426 427 3.869832 TGAAATACGTTTTGTGACCGTCA 59.130 39.130 0.00 0.00 36.12 4.35
427 428 4.455917 TGAAATACGTTTTGTGACCGTC 57.544 40.909 0.00 0.00 36.12 4.79
428 429 4.879104 TTGAAATACGTTTTGTGACCGT 57.121 36.364 0.00 0.00 38.53 4.83
429 430 5.267776 ACTTTGAAATACGTTTTGTGACCG 58.732 37.500 0.00 0.00 0.00 4.79
430 431 6.748198 TGAACTTTGAAATACGTTTTGTGACC 59.252 34.615 0.00 0.00 0.00 4.02
431 432 7.728580 TGAACTTTGAAATACGTTTTGTGAC 57.271 32.000 0.00 0.00 0.00 3.67
432 433 8.802856 CAATGAACTTTGAAATACGTTTTGTGA 58.197 29.630 0.00 0.00 0.00 3.58
433 434 8.802856 TCAATGAACTTTGAAATACGTTTTGTG 58.197 29.630 0.00 0.00 32.82 3.33
434 435 8.803799 GTCAATGAACTTTGAAATACGTTTTGT 58.196 29.630 0.00 0.00 37.36 2.83
435 436 8.802856 TGTCAATGAACTTTGAAATACGTTTTG 58.197 29.630 0.00 0.00 37.36 2.44
436 437 8.918961 TGTCAATGAACTTTGAAATACGTTTT 57.081 26.923 0.00 0.00 37.36 2.43
437 438 8.918961 TTGTCAATGAACTTTGAAATACGTTT 57.081 26.923 0.00 0.00 37.36 3.60
438 439 9.528018 AATTGTCAATGAACTTTGAAATACGTT 57.472 25.926 0.00 0.00 37.36 3.99
439 440 9.528018 AAATTGTCAATGAACTTTGAAATACGT 57.472 25.926 0.00 0.00 37.36 3.57
446 447 9.515020 GTCACTAAAATTGTCAATGAACTTTGA 57.485 29.630 0.00 0.00 33.32 2.69
447 448 8.755018 GGTCACTAAAATTGTCAATGAACTTTG 58.245 33.333 0.00 0.00 0.00 2.77
448 449 8.695456 AGGTCACTAAAATTGTCAATGAACTTT 58.305 29.630 0.00 0.00 28.28 2.66
449 450 8.237811 AGGTCACTAAAATTGTCAATGAACTT 57.762 30.769 0.00 0.00 28.28 2.66
450 451 7.823745 AGGTCACTAAAATTGTCAATGAACT 57.176 32.000 0.00 0.00 0.00 3.01
451 452 9.959749 TTAAGGTCACTAAAATTGTCAATGAAC 57.040 29.630 0.00 0.00 0.00 3.18
465 466 9.444600 GGAGACAAATACATTTAAGGTCACTAA 57.555 33.333 0.00 0.00 0.00 2.24
466 467 8.822805 AGGAGACAAATACATTTAAGGTCACTA 58.177 33.333 0.00 0.00 0.00 2.74
467 468 7.690256 AGGAGACAAATACATTTAAGGTCACT 58.310 34.615 0.00 0.00 0.00 3.41
468 469 7.923414 AGGAGACAAATACATTTAAGGTCAC 57.077 36.000 0.00 0.00 0.00 3.67
469 470 9.667107 CTTAGGAGACAAATACATTTAAGGTCA 57.333 33.333 0.00 0.00 0.00 4.02
470 471 9.886132 TCTTAGGAGACAAATACATTTAAGGTC 57.114 33.333 0.00 0.00 0.00 3.85
476 477 9.588096 AGGTTTTCTTAGGAGACAAATACATTT 57.412 29.630 0.00 0.00 0.00 2.32
477 478 9.014297 CAGGTTTTCTTAGGAGACAAATACATT 57.986 33.333 0.00 0.00 0.00 2.71
478 479 7.121315 GCAGGTTTTCTTAGGAGACAAATACAT 59.879 37.037 0.00 0.00 0.00 2.29
479 480 6.430000 GCAGGTTTTCTTAGGAGACAAATACA 59.570 38.462 0.00 0.00 0.00 2.29
480 481 6.402226 CGCAGGTTTTCTTAGGAGACAAATAC 60.402 42.308 0.00 0.00 0.00 1.89
481 482 5.642063 CGCAGGTTTTCTTAGGAGACAAATA 59.358 40.000 0.00 0.00 0.00 1.40
482 483 4.455877 CGCAGGTTTTCTTAGGAGACAAAT 59.544 41.667 0.00 0.00 0.00 2.32
483 484 3.813166 CGCAGGTTTTCTTAGGAGACAAA 59.187 43.478 0.00 0.00 0.00 2.83
484 485 3.070446 TCGCAGGTTTTCTTAGGAGACAA 59.930 43.478 0.00 0.00 0.00 3.18
485 486 2.631062 TCGCAGGTTTTCTTAGGAGACA 59.369 45.455 0.00 0.00 0.00 3.41
486 487 3.314541 TCGCAGGTTTTCTTAGGAGAC 57.685 47.619 0.00 0.00 0.00 3.36
487 488 3.513912 TCATCGCAGGTTTTCTTAGGAGA 59.486 43.478 0.00 0.00 0.00 3.71
488 489 3.861840 TCATCGCAGGTTTTCTTAGGAG 58.138 45.455 0.00 0.00 0.00 3.69
489 490 3.973206 TCATCGCAGGTTTTCTTAGGA 57.027 42.857 0.00 0.00 0.00 2.94
490 491 4.455877 AGTTTCATCGCAGGTTTTCTTAGG 59.544 41.667 0.00 0.00 0.00 2.69
524 525 8.399284 AAATATAAAATGGTTGGGAATTGGGA 57.601 30.769 0.00 0.00 0.00 4.37
525 526 8.493607 AGAAATATAAAATGGTTGGGAATTGGG 58.506 33.333 0.00 0.00 0.00 4.12
526 527 9.546428 GAGAAATATAAAATGGTTGGGAATTGG 57.454 33.333 0.00 0.00 0.00 3.16
529 530 9.713684 TCAGAGAAATATAAAATGGTTGGGAAT 57.286 29.630 0.00 0.00 0.00 3.01
530 531 8.966868 GTCAGAGAAATATAAAATGGTTGGGAA 58.033 33.333 0.00 0.00 0.00 3.97
552 553 1.021390 GGTTGGGTCTCGCATGTCAG 61.021 60.000 0.00 0.00 0.00 3.51
553 554 1.003839 GGTTGGGTCTCGCATGTCA 60.004 57.895 0.00 0.00 0.00 3.58
554 555 0.321653 AAGGTTGGGTCTCGCATGTC 60.322 55.000 0.00 0.00 0.00 3.06
555 556 0.981183 TAAGGTTGGGTCTCGCATGT 59.019 50.000 0.00 0.00 0.00 3.21
556 557 1.737793 GTTAAGGTTGGGTCTCGCATG 59.262 52.381 0.00 0.00 0.00 4.06
557 558 1.349688 TGTTAAGGTTGGGTCTCGCAT 59.650 47.619 0.00 0.00 0.00 4.73
588 589 1.737793 GACACGAAGCAAAGTATGGGG 59.262 52.381 0.00 0.00 0.00 4.96
706 710 2.352032 GCTGAGTCAGTACGGGGCT 61.352 63.158 21.06 0.00 33.43 5.19
791 795 4.660938 AGGTTGGGTTGGAGCGGC 62.661 66.667 0.00 0.00 0.00 6.53
816 820 1.078426 GTCTATGGCAGTGCGGGTT 60.078 57.895 9.45 0.00 0.00 4.11
819 823 2.203070 GGGTCTATGGCAGTGCGG 60.203 66.667 9.45 0.00 0.00 5.69
823 827 1.212935 GTGGAATGGGTCTATGGCAGT 59.787 52.381 0.00 0.00 0.00 4.40
824 828 1.477558 GGTGGAATGGGTCTATGGCAG 60.478 57.143 0.00 0.00 0.00 4.85
825 829 0.550914 GGTGGAATGGGTCTATGGCA 59.449 55.000 0.00 0.00 0.00 4.92
858 862 2.844839 GGGAGGGGGTCGATCTGG 60.845 72.222 0.00 0.00 0.00 3.86
859 863 2.844839 GGGGAGGGGGTCGATCTG 60.845 72.222 0.00 0.00 0.00 2.90
1443 1464 1.446272 GGAGAAGACGGAGCAACGG 60.446 63.158 5.09 0.00 38.39 4.44
1484 1508 0.523072 GAACGCATGCATCACAGGTT 59.477 50.000 19.57 11.43 30.99 3.50
1485 1509 1.308069 GGAACGCATGCATCACAGGT 61.308 55.000 19.57 2.04 30.99 4.00
1543 1567 1.337817 CGCTAGCGAAATCCGGATCG 61.338 60.000 32.98 20.10 42.83 3.69
1765 1789 2.497273 CTGGGGGCCTGAACTTAATTTG 59.503 50.000 0.84 0.00 0.00 2.32
1784 1808 1.747355 CCTACCAAGGCAAAGCATCTG 59.253 52.381 0.00 0.00 35.64 2.90
1785 1809 1.635487 TCCTACCAAGGCAAAGCATCT 59.365 47.619 0.00 0.00 43.31 2.90
1787 1811 2.171003 GTTCCTACCAAGGCAAAGCAT 58.829 47.619 0.00 0.00 43.31 3.79
1788 1812 1.144913 AGTTCCTACCAAGGCAAAGCA 59.855 47.619 0.00 0.00 43.31 3.91
1789 1813 1.541588 CAGTTCCTACCAAGGCAAAGC 59.458 52.381 0.00 0.00 43.31 3.51
1790 1814 2.162681 CCAGTTCCTACCAAGGCAAAG 58.837 52.381 0.00 0.00 43.31 2.77
1791 1815 1.777878 TCCAGTTCCTACCAAGGCAAA 59.222 47.619 0.00 0.00 43.31 3.68
1792 1816 1.440618 TCCAGTTCCTACCAAGGCAA 58.559 50.000 0.00 0.00 43.31 4.52
1793 1817 1.440618 TTCCAGTTCCTACCAAGGCA 58.559 50.000 0.00 0.00 43.31 4.75
1794 1818 2.808906 ATTCCAGTTCCTACCAAGGC 57.191 50.000 0.00 0.00 43.31 4.35
1795 1819 4.770795 CACTATTCCAGTTCCTACCAAGG 58.229 47.826 0.00 0.00 38.88 3.61
1796 1820 4.192317 GCACTATTCCAGTTCCTACCAAG 58.808 47.826 0.00 0.00 34.26 3.61
1797 1821 3.369052 CGCACTATTCCAGTTCCTACCAA 60.369 47.826 0.00 0.00 34.26 3.67
1798 1822 2.167693 CGCACTATTCCAGTTCCTACCA 59.832 50.000 0.00 0.00 34.26 3.25
1799 1823 2.167900 ACGCACTATTCCAGTTCCTACC 59.832 50.000 0.00 0.00 34.26 3.18
1800 1824 3.187700 CACGCACTATTCCAGTTCCTAC 58.812 50.000 0.00 0.00 34.26 3.18
1801 1825 2.829720 ACACGCACTATTCCAGTTCCTA 59.170 45.455 0.00 0.00 34.26 2.94
1802 1826 1.623811 ACACGCACTATTCCAGTTCCT 59.376 47.619 0.00 0.00 34.26 3.36
1849 1873 5.501156 ACCAATTTACATTCCAGAGACTCC 58.499 41.667 0.00 0.00 0.00 3.85
1860 1884 5.151454 TCCAGACCCAAACCAATTTACATT 58.849 37.500 0.00 0.00 0.00 2.71
1861 1885 4.746466 TCCAGACCCAAACCAATTTACAT 58.254 39.130 0.00 0.00 0.00 2.29
1863 1887 5.011635 ACATTCCAGACCCAAACCAATTTAC 59.988 40.000 0.00 0.00 0.00 2.01
1864 1888 5.011533 CACATTCCAGACCCAAACCAATTTA 59.988 40.000 0.00 0.00 0.00 1.40
2079 2194 7.715249 GCTTCAACACTCAAATCCCATACTATA 59.285 37.037 0.00 0.00 0.00 1.31
2087 2202 2.229784 CCTGCTTCAACACTCAAATCCC 59.770 50.000 0.00 0.00 0.00 3.85
2105 2220 0.956633 TTTCTGAAGCTGCTTGCCTG 59.043 50.000 21.25 10.29 44.23 4.85
2106 2221 1.339291 GTTTTCTGAAGCTGCTTGCCT 59.661 47.619 21.25 0.00 44.23 4.75
2107 2222 1.339291 AGTTTTCTGAAGCTGCTTGCC 59.661 47.619 21.25 6.89 44.23 4.52
2108 2223 2.789491 AGTTTTCTGAAGCTGCTTGC 57.211 45.000 21.25 11.71 43.29 4.01
2109 2224 4.297299 TCAAGTTTTCTGAAGCTGCTTG 57.703 40.909 21.25 6.50 34.80 4.01
2110 2225 5.068198 TGAATCAAGTTTTCTGAAGCTGCTT 59.932 36.000 15.92 15.92 0.00 3.91
2111 2226 4.581824 TGAATCAAGTTTTCTGAAGCTGCT 59.418 37.500 0.00 0.00 0.00 4.24
2132 2247 5.013495 AGGAACATGGAAGAACAGAAGATGA 59.987 40.000 0.00 0.00 0.00 2.92
2199 2315 2.997986 CAAAAGAAGGCATGCATTCCAC 59.002 45.455 34.35 16.40 37.43 4.02
2262 2380 5.929992 ATTCAGATGGAAAGTTGCAAACATG 59.070 36.000 0.00 0.00 43.18 3.21
2407 2568 1.227674 GATACTTGAGGGGGCAGCG 60.228 63.158 0.00 0.00 0.00 5.18
2471 2632 6.539826 ACATCAATGATCAAAAGATGCTCGTA 59.460 34.615 23.96 0.00 39.64 3.43
2506 2667 3.190874 GCGAGAGATTTCAGGTTACAGG 58.809 50.000 0.00 0.00 0.00 4.00
2546 2707 7.168219 AGACAAGTGAGCATAAATTCTTACCA 58.832 34.615 0.00 0.00 0.00 3.25
2547 2708 7.617041 AGACAAGTGAGCATAAATTCTTACC 57.383 36.000 0.00 0.00 0.00 2.85
2562 2723 8.621286 GTTCTCCAAAAGATAAAAGACAAGTGA 58.379 33.333 0.00 0.00 32.82 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.