Multiple sequence alignment - TraesCS6A01G297300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G297300 chr6A 100.000 3989 0 0 1 3989 530623446 530619458 0.000000e+00 7367.0
1 TraesCS6A01G297300 chr6A 88.919 731 41 14 1501 2201 530602435 530601715 0.000000e+00 865.0
2 TraesCS6A01G297300 chr6A 82.703 740 64 26 1185 1871 530604002 530603274 2.050000e-167 599.0
3 TraesCS6A01G297300 chr6A 86.717 399 23 14 1501 1871 530602846 530602450 2.220000e-112 416.0
4 TraesCS6A01G297300 chr6A 86.717 399 22 17 1501 1871 530603259 530602864 7.980000e-112 414.0
5 TraesCS6A01G297300 chr6A 76.771 607 103 25 472 1062 530604778 530604194 5.010000e-79 305.0
6 TraesCS6A01G297300 chr6A 86.747 166 14 5 52 209 530607165 530607000 1.140000e-40 178.0
7 TraesCS6A01G297300 chr6B 92.770 2531 102 31 398 2903 576613357 576610883 0.000000e+00 3585.0
8 TraesCS6A01G297300 chr6B 93.934 577 15 4 3413 3989 576609460 576608904 0.000000e+00 854.0
9 TraesCS6A01G297300 chr6B 92.839 391 23 2 2905 3293 576610085 576609698 2.690000e-156 562.0
10 TraesCS6A01G297300 chr6B 76.987 604 101 25 471 1062 576460529 576459952 1.080000e-80 311.0
11 TraesCS6A01G297300 chr6B 79.781 183 22 6 1177 1353 576459747 576459574 7.000000e-23 119.0
12 TraesCS6A01G297300 chr6D 91.352 1272 52 21 2740 3989 386088325 386087090 0.000000e+00 1687.0
13 TraesCS6A01G297300 chr6D 90.071 282 25 2 2461 2742 386088726 386088448 2.930000e-96 363.0
14 TraesCS6A01G297300 chr6D 90.514 253 20 3 1773 2022 386082626 386082877 8.260000e-87 331.0
15 TraesCS6A01G297300 chr6D 89.441 161 13 3 52 209 386083468 386083309 2.430000e-47 200.0
16 TraesCS6A01G297300 chr6D 87.692 65 5 3 451 513 386083020 386082957 5.530000e-09 73.1
17 TraesCS6A01G297300 chr7B 100.000 29 0 0 74 102 598092755 598092783 2.000000e-03 54.7
18 TraesCS6A01G297300 chr2B 100.000 29 0 0 74 102 508170322 508170350 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G297300 chr6A 530619458 530623446 3988 True 7367.000000 7367 100.000000 1 3989 1 chr6A.!!$R1 3988
1 TraesCS6A01G297300 chr6A 530601715 530607165 5450 True 462.833333 865 84.762333 52 2201 6 chr6A.!!$R2 2149
2 TraesCS6A01G297300 chr6B 576608904 576613357 4453 True 1667.000000 3585 93.181000 398 3989 3 chr6B.!!$R2 3591
3 TraesCS6A01G297300 chr6B 576459574 576460529 955 True 215.000000 311 78.384000 471 1353 2 chr6B.!!$R1 882
4 TraesCS6A01G297300 chr6D 386082957 386088726 5769 True 580.775000 1687 89.639000 52 3989 4 chr6D.!!$R1 3937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 323 0.033504 TCGCCTTGTTGTCTGTCTCC 59.966 55.000 0.00 0.0 0.00 3.71 F
931 2966 1.071471 CGGGAGTGCTTCCTGTTGT 59.929 57.895 8.11 0.0 45.85 3.32 F
1629 4220 1.805943 TGAGATGATGGTTTGTGCACG 59.194 47.619 13.13 0.0 0.00 5.34 F
2461 5913 1.153489 CTCTGGGTCGATGTGCCTG 60.153 63.158 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2143 5585 1.673920 GAACCAAAGCGGAACTTGACA 59.326 47.619 0.00 0.00 39.09 3.58 R
2424 5876 0.166814 GAGCGCAAACATCTGGACAC 59.833 55.000 11.47 0.00 0.00 3.67 R
2597 6049 0.387878 GCATACTGCTCCTCGATCCG 60.388 60.000 0.00 0.00 40.96 4.18 R
3753 8306 0.304098 GCATGCGCTCTGACAGATTC 59.696 55.000 9.73 0.33 34.30 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.291067 GAATTTTTGCTCTGTTTCCCTTTG 57.709 37.500 0.00 0.00 0.00 2.77
24 25 3.817709 TTTTGCTCTGTTTCCCTTTGG 57.182 42.857 0.00 0.00 0.00 3.28
25 26 2.746279 TTGCTCTGTTTCCCTTTGGA 57.254 45.000 0.00 0.00 39.54 3.53
38 39 5.528600 TCCCTTTGGAAAAGTATGGATGA 57.471 39.130 0.00 0.00 37.86 2.92
39 40 6.091076 TCCCTTTGGAAAAGTATGGATGAT 57.909 37.500 0.00 0.00 37.86 2.45
40 41 5.893255 TCCCTTTGGAAAAGTATGGATGATG 59.107 40.000 0.00 0.00 37.86 3.07
41 42 5.893255 CCCTTTGGAAAAGTATGGATGATGA 59.107 40.000 0.00 0.00 0.00 2.92
42 43 6.552350 CCCTTTGGAAAAGTATGGATGATGAT 59.448 38.462 0.00 0.00 0.00 2.45
43 44 7.725397 CCCTTTGGAAAAGTATGGATGATGATA 59.275 37.037 0.00 0.00 0.00 2.15
44 45 8.790718 CCTTTGGAAAAGTATGGATGATGATAG 58.209 37.037 0.00 0.00 0.00 2.08
45 46 7.750229 TTGGAAAAGTATGGATGATGATAGC 57.250 36.000 0.00 0.00 0.00 2.97
46 47 6.840527 TGGAAAAGTATGGATGATGATAGCA 58.159 36.000 0.00 0.00 0.00 3.49
47 48 7.464273 TGGAAAAGTATGGATGATGATAGCAT 58.536 34.615 0.00 0.00 37.47 3.79
48 49 7.946219 TGGAAAAGTATGGATGATGATAGCATT 59.054 33.333 0.00 0.00 34.11 3.56
49 50 9.453572 GGAAAAGTATGGATGATGATAGCATTA 57.546 33.333 0.00 0.00 34.11 1.90
69 70 9.726438 AGCATTAATATTAGTGATAGTTGGTCC 57.274 33.333 19.08 1.02 0.00 4.46
131 134 7.672983 CTGTATTGAAACAGTATCCTTGTGT 57.327 36.000 0.00 0.00 41.63 3.72
147 150 5.765182 TCCTTGTGTTCATTTTCTTCCTCTC 59.235 40.000 0.00 0.00 0.00 3.20
152 155 4.758674 TGTTCATTTTCTTCCTCTCAGCTG 59.241 41.667 7.63 7.63 0.00 4.24
157 160 1.141449 CTTCCTCTCAGCTGCCTCG 59.859 63.158 9.47 0.00 0.00 4.63
158 161 2.904470 CTTCCTCTCAGCTGCCTCGC 62.904 65.000 9.47 0.00 0.00 5.03
167 173 1.596477 GCTGCCTCGCTCCTTATGG 60.596 63.158 0.00 0.00 0.00 2.74
168 174 1.596477 CTGCCTCGCTCCTTATGGC 60.596 63.158 0.00 0.00 43.49 4.40
188 194 1.067354 CCCAAGAATTCAGCTTGTGGC 60.067 52.381 8.44 0.00 40.79 5.01
201 210 1.949525 CTTGTGGCACTGCTTGTAAGT 59.050 47.619 19.83 0.00 0.00 2.24
214 223 4.795268 GCTTGTAAGTAAAGCCTTGAACC 58.205 43.478 0.00 0.00 43.45 3.62
215 224 4.321008 GCTTGTAAGTAAAGCCTTGAACCC 60.321 45.833 0.00 0.00 43.45 4.11
216 225 4.440826 TGTAAGTAAAGCCTTGAACCCA 57.559 40.909 0.00 0.00 0.00 4.51
218 227 5.390387 TGTAAGTAAAGCCTTGAACCCAAT 58.610 37.500 0.00 0.00 0.00 3.16
219 228 5.836358 TGTAAGTAAAGCCTTGAACCCAATT 59.164 36.000 0.00 0.00 0.00 2.32
220 229 7.005296 TGTAAGTAAAGCCTTGAACCCAATTA 58.995 34.615 0.00 0.00 0.00 1.40
221 230 7.672239 TGTAAGTAAAGCCTTGAACCCAATTAT 59.328 33.333 0.00 0.00 0.00 1.28
223 232 6.016555 AGTAAAGCCTTGAACCCAATTATGT 58.983 36.000 0.00 0.00 0.00 2.29
224 233 5.405935 AAAGCCTTGAACCCAATTATGTC 57.594 39.130 0.00 0.00 0.00 3.06
225 234 4.046286 AGCCTTGAACCCAATTATGTCA 57.954 40.909 0.00 0.00 0.00 3.58
226 235 4.415596 AGCCTTGAACCCAATTATGTCAA 58.584 39.130 0.00 0.00 0.00 3.18
227 236 4.220602 AGCCTTGAACCCAATTATGTCAAC 59.779 41.667 0.00 0.00 0.00 3.18
229 238 5.622233 GCCTTGAACCCAATTATGTCAACTC 60.622 44.000 0.00 0.00 0.00 3.01
230 239 5.476599 CCTTGAACCCAATTATGTCAACTCA 59.523 40.000 0.00 0.00 0.00 3.41
231 240 6.349611 CCTTGAACCCAATTATGTCAACTCAG 60.350 42.308 0.00 0.00 0.00 3.35
232 241 4.458989 TGAACCCAATTATGTCAACTCAGC 59.541 41.667 0.00 0.00 0.00 4.26
234 243 4.406456 ACCCAATTATGTCAACTCAGCAA 58.594 39.130 0.00 0.00 0.00 3.91
235 244 5.018809 ACCCAATTATGTCAACTCAGCAAT 58.981 37.500 0.00 0.00 0.00 3.56
236 245 5.105635 ACCCAATTATGTCAACTCAGCAATG 60.106 40.000 0.00 0.00 0.00 2.82
237 246 5.345702 CCAATTATGTCAACTCAGCAATGG 58.654 41.667 0.00 0.00 0.00 3.16
238 247 5.105635 CCAATTATGTCAACTCAGCAATGGT 60.106 40.000 0.00 0.00 0.00 3.55
239 248 6.095300 CCAATTATGTCAACTCAGCAATGGTA 59.905 38.462 0.00 0.00 0.00 3.25
240 249 7.362834 CCAATTATGTCAACTCAGCAATGGTAA 60.363 37.037 0.00 0.00 0.00 2.85
241 250 6.494893 TTATGTCAACTCAGCAATGGTAAC 57.505 37.500 0.00 0.00 0.00 2.50
261 270 9.489084 TGGTAACATGCTTATATGTGAATAGTC 57.511 33.333 0.00 0.00 46.17 2.59
262 271 8.936864 GGTAACATGCTTATATGTGAATAGTCC 58.063 37.037 0.00 0.00 40.24 3.85
263 272 9.489084 GTAACATGCTTATATGTGAATAGTCCA 57.511 33.333 0.00 0.00 40.24 4.02
264 273 8.978874 AACATGCTTATATGTGAATAGTCCAA 57.021 30.769 0.00 0.00 40.24 3.53
265 274 9.578576 AACATGCTTATATGTGAATAGTCCAAT 57.421 29.630 0.00 0.00 40.24 3.16
266 275 9.224267 ACATGCTTATATGTGAATAGTCCAATC 57.776 33.333 0.00 0.00 39.68 2.67
267 276 9.445878 CATGCTTATATGTGAATAGTCCAATCT 57.554 33.333 0.00 0.00 0.00 2.40
269 278 9.929180 TGCTTATATGTGAATAGTCCAATCTAC 57.071 33.333 0.00 0.00 0.00 2.59
270 279 9.929180 GCTTATATGTGAATAGTCCAATCTACA 57.071 33.333 0.00 0.00 0.00 2.74
281 290 9.461312 AATAGTCCAATCTACAATTAGTTGCAA 57.539 29.630 0.00 0.00 38.96 4.08
284 293 9.632638 AGTCCAATCTACAATTAGTTGCAATAT 57.367 29.630 0.59 0.00 38.96 1.28
298 307 9.582431 TTAGTTGCAATATCTATACTAATCGCC 57.418 33.333 0.59 0.00 0.00 5.54
302 311 7.611770 TGCAATATCTATACTAATCGCCTTGT 58.388 34.615 0.00 0.00 0.00 3.16
312 322 2.086054 ATCGCCTTGTTGTCTGTCTC 57.914 50.000 0.00 0.00 0.00 3.36
313 323 0.033504 TCGCCTTGTTGTCTGTCTCC 59.966 55.000 0.00 0.00 0.00 3.71
323 333 4.246458 GTTGTCTGTCTCCGCTTAGAAAT 58.754 43.478 0.00 0.00 0.00 2.17
324 334 4.111375 TGTCTGTCTCCGCTTAGAAATC 57.889 45.455 0.00 0.00 0.00 2.17
337 347 5.177142 CGCTTAGAAATCTGTGGATGATCAG 59.823 44.000 0.09 0.00 31.75 2.90
339 349 6.566079 TTAGAAATCTGTGGATGATCAGGT 57.434 37.500 0.09 0.00 33.13 4.00
343 360 4.849813 ATCTGTGGATGATCAGGTGAAA 57.150 40.909 0.09 0.00 33.13 2.69
369 386 6.293626 CCATTTGGACAGAACACTAGAAGTTG 60.294 42.308 9.46 1.55 37.39 3.16
371 388 4.693283 TGGACAGAACACTAGAAGTTGTG 58.307 43.478 20.04 20.04 43.49 3.33
374 391 5.339008 ACAGAACACTAGAAGTTGTGTCA 57.661 39.130 20.95 0.00 46.48 3.58
375 392 5.352284 ACAGAACACTAGAAGTTGTGTCAG 58.648 41.667 20.95 6.63 46.48 3.51
376 393 5.105310 ACAGAACACTAGAAGTTGTGTCAGT 60.105 40.000 20.95 7.12 46.48 3.41
378 395 7.148641 CAGAACACTAGAAGTTGTGTCAGTAT 58.851 38.462 16.16 0.00 45.33 2.12
379 396 7.115520 CAGAACACTAGAAGTTGTGTCAGTATG 59.884 40.741 16.16 0.00 45.33 2.39
380 397 5.230942 ACACTAGAAGTTGTGTCAGTATGC 58.769 41.667 0.00 0.00 42.95 3.14
382 399 5.347093 CACTAGAAGTTGTGTCAGTATGCAG 59.653 44.000 0.00 0.00 34.76 4.41
383 400 3.668447 AGAAGTTGTGTCAGTATGCAGG 58.332 45.455 0.00 0.00 34.76 4.85
386 2354 1.879380 GTTGTGTCAGTATGCAGGCAA 59.121 47.619 0.00 0.00 34.76 4.52
388 2356 2.580962 TGTGTCAGTATGCAGGCAAAA 58.419 42.857 0.00 0.00 34.76 2.44
390 2358 2.293122 GTGTCAGTATGCAGGCAAAACA 59.707 45.455 0.00 0.00 34.76 2.83
393 2361 3.735746 GTCAGTATGCAGGCAAAACAAAC 59.264 43.478 0.00 0.00 34.76 2.93
395 2363 4.118410 CAGTATGCAGGCAAAACAAACAA 58.882 39.130 0.00 0.00 0.00 2.83
412 2380 6.151691 ACAAACAACATACTAGCAAGCAATG 58.848 36.000 0.00 0.00 0.00 2.82
432 2400 1.073763 GCAATTTTGGCTCCCCCTTTT 59.926 47.619 0.00 0.00 0.00 2.27
570 2585 1.516423 GAGTAACCGCTCTCCCCAC 59.484 63.158 0.00 0.00 32.99 4.61
575 2590 2.765807 CCGCTCTCCCCACCATCT 60.766 66.667 0.00 0.00 0.00 2.90
635 2659 1.296715 CAACCCGTCTTCCCCTCTG 59.703 63.158 0.00 0.00 0.00 3.35
636 2660 2.593956 AACCCGTCTTCCCCTCTGC 61.594 63.158 0.00 0.00 0.00 4.26
637 2661 2.685380 CCCGTCTTCCCCTCTGCT 60.685 66.667 0.00 0.00 0.00 4.24
801 2836 2.279120 CAGCGTGCTCGGGAGATC 60.279 66.667 10.52 0.00 38.80 2.75
931 2966 1.071471 CGGGAGTGCTTCCTGTTGT 59.929 57.895 8.11 0.00 45.85 3.32
1282 3425 3.184683 CCGAAGCTCAGTCGCTGC 61.185 66.667 0.64 0.00 40.79 5.25
1411 3574 6.308766 GCATACACAAATCCAACATCAGAAAC 59.691 38.462 0.00 0.00 0.00 2.78
1435 3598 4.624882 GTGAGCTCAGATTATATTGGCTCG 59.375 45.833 18.89 0.00 44.96 5.03
1439 3602 7.093771 TGAGCTCAGATTATATTGGCTCGATAA 60.094 37.037 13.74 0.00 44.96 1.75
1543 4134 9.755804 ATATATGAATAGTGGATATCAGTTGCG 57.244 33.333 4.83 0.00 0.00 4.85
1553 4144 6.256975 GTGGATATCAGTTGCGTGTACAATAA 59.743 38.462 4.83 0.00 0.00 1.40
1594 4185 5.360714 GCCATTTCTCAGATTATGGTTCCAA 59.639 40.000 14.70 0.00 39.75 3.53
1629 4220 1.805943 TGAGATGATGGTTTGTGCACG 59.194 47.619 13.13 0.00 0.00 5.34
1773 4802 9.023962 TCCTATTAGAGTTGAATTTTGTGCAAT 57.976 29.630 0.00 0.00 0.00 3.56
1774 4803 9.079833 CCTATTAGAGTTGAATTTTGTGCAATG 57.920 33.333 0.00 0.00 0.00 2.82
1784 4813 4.686191 TTTTGTGCAATGGTGGAAGATT 57.314 36.364 0.00 0.00 0.00 2.40
1815 4845 3.718723 AGGGAGCAAGAGTAGAAGATGT 58.281 45.455 0.00 0.00 0.00 3.06
1861 5300 5.423015 TGCAATATTTCCTCTGTCTGTCTC 58.577 41.667 0.00 0.00 0.00 3.36
2038 5479 5.591067 ACCAGGTTTTCTCGAACATTTTACA 59.409 36.000 0.00 0.00 0.00 2.41
2039 5480 5.912955 CCAGGTTTTCTCGAACATTTTACAC 59.087 40.000 0.00 0.00 0.00 2.90
2061 5502 5.474532 CACATTTCTTTCCTTGAGATGGACA 59.525 40.000 0.00 0.00 32.45 4.02
2062 5503 6.152323 CACATTTCTTTCCTTGAGATGGACAT 59.848 38.462 0.00 0.00 32.45 3.06
2142 5584 6.536224 CAGCTGATGTATGATCAGTGTTTGTA 59.464 38.462 8.42 0.00 45.38 2.41
2143 5585 7.226128 CAGCTGATGTATGATCAGTGTTTGTAT 59.774 37.037 8.42 0.00 45.38 2.29
2201 5645 7.078851 GTCTTAAAAAGAAACTCCAAGCTAGC 58.921 38.462 6.62 6.62 39.67 3.42
2246 5690 3.312890 AGGTGGTGCTAGATTGCTAGAT 58.687 45.455 4.23 0.00 45.71 1.98
2274 5718 8.127150 TCAGTGTTCAGAGAAGAGATATCAAA 57.873 34.615 5.32 0.00 0.00 2.69
2316 5768 9.334693 GTAGCAGTAGATGTTTCTTTTGAATTG 57.665 33.333 0.00 0.00 38.37 2.32
2334 5786 8.792830 TTGAATTGAGGGTTATTACTCTGAAG 57.207 34.615 0.00 0.00 34.40 3.02
2369 5821 7.065563 CAGATAATCAGCTGGAGTAATATTGCC 59.934 40.741 15.13 1.49 34.44 4.52
2461 5913 1.153489 CTCTGGGTCGATGTGCCTG 60.153 63.158 0.00 0.00 0.00 4.85
2550 6002 7.390718 GGTTCACCTTGTATTTCAGATAGTGTT 59.609 37.037 0.00 0.00 0.00 3.32
2551 6003 8.784043 GTTCACCTTGTATTTCAGATAGTGTTT 58.216 33.333 0.00 0.00 0.00 2.83
2597 6049 2.048503 CCTTGTCCGGACGGTCAC 60.049 66.667 28.70 5.90 33.38 3.67
2817 6394 1.004745 CACCATGTGGGCTTTCCTAGT 59.995 52.381 3.77 0.00 42.05 2.57
2825 6402 1.002134 GCTTTCCTAGTGCTGGCCA 60.002 57.895 4.71 4.71 0.00 5.36
2852 6429 4.322080 TGCTTCCTCGTGTATTGGATAG 57.678 45.455 0.00 0.00 0.00 2.08
2853 6430 3.704566 TGCTTCCTCGTGTATTGGATAGT 59.295 43.478 0.00 0.00 0.00 2.12
2854 6431 4.051922 GCTTCCTCGTGTATTGGATAGTG 58.948 47.826 0.00 0.00 0.00 2.74
2855 6432 4.621991 CTTCCTCGTGTATTGGATAGTGG 58.378 47.826 0.00 0.00 0.00 4.00
2856 6433 3.905968 TCCTCGTGTATTGGATAGTGGA 58.094 45.455 0.00 0.00 0.00 4.02
2857 6434 4.480115 TCCTCGTGTATTGGATAGTGGAT 58.520 43.478 0.00 0.00 0.00 3.41
2858 6435 5.637127 TCCTCGTGTATTGGATAGTGGATA 58.363 41.667 0.00 0.00 0.00 2.59
2859 6436 6.253758 TCCTCGTGTATTGGATAGTGGATAT 58.746 40.000 0.00 0.00 0.00 1.63
2907 7280 9.891828 TTGCTCTTTATACTGTTTATTTGTGTG 57.108 29.630 0.00 0.00 0.00 3.82
2971 7345 2.107950 TGCAGTGTTGTATGGTAGGC 57.892 50.000 0.00 0.00 0.00 3.93
3038 7412 3.119459 AGCTGCTTTCATGCAAGAAGATG 60.119 43.478 16.46 1.53 42.83 2.90
3046 7420 2.543578 GCAAGAAGATGCACCGTCA 58.456 52.632 0.00 0.00 45.70 4.35
3152 7526 6.172630 TGTGTGATACTGATGCATGTAGTTT 58.827 36.000 15.95 9.94 0.00 2.66
3223 7597 9.657121 GCTATAAACTGCTTATGTGAATTCTTC 57.343 33.333 7.05 0.90 32.28 2.87
3272 7646 1.064685 GGACCCCCGATTTCTGTCAAT 60.065 52.381 0.00 0.00 0.00 2.57
3273 7647 2.620627 GGACCCCCGATTTCTGTCAATT 60.621 50.000 0.00 0.00 0.00 2.32
3275 7649 4.266714 GACCCCCGATTTCTGTCAATTTA 58.733 43.478 0.00 0.00 0.00 1.40
3300 7674 1.244816 GAACCGCCTTTAACTTGCCT 58.755 50.000 0.00 0.00 0.00 4.75
3306 7680 1.816835 GCCTTTAACTTGCCTACCACC 59.183 52.381 0.00 0.00 0.00 4.61
3340 7729 5.356751 GCATAACATGATAAACCTGACACCA 59.643 40.000 0.00 0.00 0.00 4.17
3378 7767 0.389948 GCAGTAGAGTTGACACCCCG 60.390 60.000 0.00 0.00 0.00 5.73
3379 7768 0.246635 CAGTAGAGTTGACACCCCGG 59.753 60.000 0.00 0.00 0.00 5.73
3391 7780 1.606313 ACCCCGGTTGCAAATCTGG 60.606 57.895 0.00 4.08 30.11 3.86
3452 8005 4.403453 GTTCTGTATGCAAACGATTCACC 58.597 43.478 0.00 0.00 0.00 4.02
3549 8102 7.721399 ACTGAAAAGTTCCTGTTAATCACTGAT 59.279 33.333 0.00 0.00 0.00 2.90
3550 8103 9.219603 CTGAAAAGTTCCTGTTAATCACTGATA 57.780 33.333 0.00 0.00 0.00 2.15
3551 8104 9.739276 TGAAAAGTTCCTGTTAATCACTGATAT 57.261 29.630 0.00 0.00 0.00 1.63
3552 8105 9.994432 GAAAAGTTCCTGTTAATCACTGATATG 57.006 33.333 0.00 0.00 0.00 1.78
3553 8106 9.739276 AAAAGTTCCTGTTAATCACTGATATGA 57.261 29.630 0.00 0.00 0.00 2.15
3554 8107 9.911788 AAAGTTCCTGTTAATCACTGATATGAT 57.088 29.630 0.00 0.00 41.20 2.45
3555 8108 9.553064 AAGTTCCTGTTAATCACTGATATGATC 57.447 33.333 0.00 0.00 38.40 2.92
3556 8109 8.932610 AGTTCCTGTTAATCACTGATATGATCT 58.067 33.333 0.00 0.00 38.40 2.75
3559 8112 9.029368 TCCTGTTAATCACTGATATGATCTAGG 57.971 37.037 0.00 0.00 38.40 3.02
3560 8113 9.029368 CCTGTTAATCACTGATATGATCTAGGA 57.971 37.037 0.00 0.00 38.40 2.94
3580 8133 2.453521 ACGGAGTAGGTGTCTGCATAA 58.546 47.619 0.00 0.00 41.94 1.90
3684 8237 6.363357 GCAATTCTTGATTCTGGTACACAAAC 59.637 38.462 0.00 0.00 0.00 2.93
3688 8241 1.127951 GATTCTGGTACACAAACCGCG 59.872 52.381 0.00 0.00 42.91 6.46
3753 8306 2.236489 AACCCTGGGAAATCATGGTG 57.764 50.000 22.23 0.00 36.13 4.17
3771 8324 1.326852 GTGAATCTGTCAGAGCGCATG 59.673 52.381 11.47 8.44 36.74 4.06
3828 8384 5.356426 CGCCGATTCCCATCATACATAATA 58.644 41.667 0.00 0.00 0.00 0.98
3830 8386 6.112734 GCCGATTCCCATCATACATAATACA 58.887 40.000 0.00 0.00 0.00 2.29
3874 8430 7.201644 CGAGTAAATTCAGGCATTGAGTATGTT 60.202 37.037 0.00 0.00 37.07 2.71
3894 8450 5.067273 TGTTCGGTTCAACCACTGAATATT 58.933 37.500 7.52 0.00 45.74 1.28
3923 8482 3.095332 TCTGTGAACTCTGCAGAGCTAT 58.905 45.455 37.78 26.10 45.79 2.97
3924 8483 4.097135 GTCTGTGAACTCTGCAGAGCTATA 59.903 45.833 37.78 22.55 45.79 1.31
3925 8484 4.337836 TCTGTGAACTCTGCAGAGCTATAG 59.662 45.833 37.78 28.67 45.79 1.31
3926 8485 4.019858 TGTGAACTCTGCAGAGCTATAGT 58.980 43.478 37.78 19.47 45.79 2.12
3927 8486 5.193679 TGTGAACTCTGCAGAGCTATAGTA 58.806 41.667 37.78 18.69 45.79 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.237127 CCAAAGGGAAACAGAGCAAAAATTC 59.763 40.000 0.00 0.00 35.59 2.17
1 2 5.104569 TCCAAAGGGAAACAGAGCAAAAATT 60.105 36.000 0.00 0.00 41.32 1.82
2 3 4.408596 TCCAAAGGGAAACAGAGCAAAAAT 59.591 37.500 0.00 0.00 41.32 1.82
5 6 3.025322 TCCAAAGGGAAACAGAGCAAA 57.975 42.857 0.00 0.00 41.32 3.68
6 7 2.746279 TCCAAAGGGAAACAGAGCAA 57.254 45.000 0.00 0.00 41.32 3.91
16 17 5.528600 TCATCCATACTTTTCCAAAGGGA 57.471 39.130 1.50 0.00 43.03 4.20
17 18 5.893255 TCATCATCCATACTTTTCCAAAGGG 59.107 40.000 1.50 0.00 0.00 3.95
18 19 7.592885 ATCATCATCCATACTTTTCCAAAGG 57.407 36.000 1.50 0.00 0.00 3.11
19 20 8.295288 GCTATCATCATCCATACTTTTCCAAAG 58.705 37.037 0.00 0.00 0.00 2.77
20 21 7.779326 TGCTATCATCATCCATACTTTTCCAAA 59.221 33.333 0.00 0.00 0.00 3.28
21 22 7.289310 TGCTATCATCATCCATACTTTTCCAA 58.711 34.615 0.00 0.00 0.00 3.53
22 23 6.840527 TGCTATCATCATCCATACTTTTCCA 58.159 36.000 0.00 0.00 0.00 3.53
23 24 7.934855 ATGCTATCATCATCCATACTTTTCC 57.065 36.000 0.00 0.00 0.00 3.13
43 44 9.726438 GGACCAACTATCACTAATATTAATGCT 57.274 33.333 0.00 0.00 0.00 3.79
44 45 9.502091 TGGACCAACTATCACTAATATTAATGC 57.498 33.333 0.00 0.00 0.00 3.56
76 77 4.976116 CCTTGCTGCACTTTTTGTTACTAC 59.024 41.667 0.00 0.00 0.00 2.73
87 90 2.372172 AGTAAGGTACCTTGCTGCACTT 59.628 45.455 35.78 17.06 44.95 3.16
89 92 2.474410 AGTAAGGTACCTTGCTGCAC 57.526 50.000 35.78 25.12 44.95 4.57
131 134 3.755378 GCAGCTGAGAGGAAGAAAATGAA 59.245 43.478 20.43 0.00 0.00 2.57
152 155 2.281139 GGCCATAAGGAGCGAGGC 60.281 66.667 0.00 0.00 44.48 4.70
157 160 2.371658 ATTCTTGGGCCATAAGGAGC 57.628 50.000 7.26 0.00 36.89 4.70
158 161 3.887716 CTGAATTCTTGGGCCATAAGGAG 59.112 47.826 7.26 0.25 36.89 3.69
167 173 1.067354 CCACAAGCTGAATTCTTGGGC 60.067 52.381 7.05 6.16 42.13 5.36
168 174 1.067354 GCCACAAGCTGAATTCTTGGG 60.067 52.381 7.05 4.19 43.77 4.12
201 210 6.013379 TGACATAATTGGGTTCAAGGCTTTA 58.987 36.000 0.00 0.00 36.19 1.85
209 218 4.458989 GCTGAGTTGACATAATTGGGTTCA 59.541 41.667 0.00 0.00 0.00 3.18
210 219 4.458989 TGCTGAGTTGACATAATTGGGTTC 59.541 41.667 0.00 0.00 0.00 3.62
214 223 5.105635 ACCATTGCTGAGTTGACATAATTGG 60.106 40.000 0.00 0.00 0.00 3.16
215 224 5.957798 ACCATTGCTGAGTTGACATAATTG 58.042 37.500 0.00 0.00 0.00 2.32
216 225 7.176515 TGTTACCATTGCTGAGTTGACATAATT 59.823 33.333 0.00 0.00 0.00 1.40
218 227 6.000840 TGTTACCATTGCTGAGTTGACATAA 58.999 36.000 0.00 0.00 0.00 1.90
219 228 5.555966 TGTTACCATTGCTGAGTTGACATA 58.444 37.500 0.00 0.00 0.00 2.29
220 229 4.397420 TGTTACCATTGCTGAGTTGACAT 58.603 39.130 0.00 0.00 0.00 3.06
221 230 3.814625 TGTTACCATTGCTGAGTTGACA 58.185 40.909 0.00 0.00 0.00 3.58
223 232 3.191162 GCATGTTACCATTGCTGAGTTGA 59.809 43.478 0.00 0.00 0.00 3.18
224 233 3.192001 AGCATGTTACCATTGCTGAGTTG 59.808 43.478 4.22 0.00 35.51 3.16
225 234 3.424703 AGCATGTTACCATTGCTGAGTT 58.575 40.909 4.22 0.00 35.51 3.01
226 235 3.077484 AGCATGTTACCATTGCTGAGT 57.923 42.857 4.22 0.00 35.51 3.41
227 236 5.762825 ATAAGCATGTTACCATTGCTGAG 57.237 39.130 5.54 0.00 36.34 3.35
229 238 6.859508 CACATATAAGCATGTTACCATTGCTG 59.140 38.462 5.54 0.00 37.02 4.41
230 239 6.772233 TCACATATAAGCATGTTACCATTGCT 59.228 34.615 0.00 0.00 37.02 3.91
231 240 6.969366 TCACATATAAGCATGTTACCATTGC 58.031 36.000 0.00 0.00 37.02 3.56
235 244 9.489084 GACTATTCACATATAAGCATGTTACCA 57.511 33.333 0.00 0.00 37.02 3.25
236 245 8.936864 GGACTATTCACATATAAGCATGTTACC 58.063 37.037 0.00 0.00 37.02 2.85
237 246 9.489084 TGGACTATTCACATATAAGCATGTTAC 57.511 33.333 0.00 0.00 37.02 2.50
239 248 8.978874 TTGGACTATTCACATATAAGCATGTT 57.021 30.769 0.00 0.00 37.02 2.71
240 249 9.224267 GATTGGACTATTCACATATAAGCATGT 57.776 33.333 0.00 0.00 39.76 3.21
241 250 9.445878 AGATTGGACTATTCACATATAAGCATG 57.554 33.333 0.00 0.00 0.00 4.06
243 252 9.929180 GTAGATTGGACTATTCACATATAAGCA 57.071 33.333 0.00 0.00 0.00 3.91
244 253 9.929180 TGTAGATTGGACTATTCACATATAAGC 57.071 33.333 0.00 0.00 0.00 3.09
253 262 9.109393 GCAACTAATTGTAGATTGGACTATTCA 57.891 33.333 0.00 0.00 38.17 2.57
254 263 9.109393 TGCAACTAATTGTAGATTGGACTATTC 57.891 33.333 0.00 0.00 38.17 1.75
255 264 9.461312 TTGCAACTAATTGTAGATTGGACTATT 57.539 29.630 0.00 0.00 38.17 1.73
256 265 9.632638 ATTGCAACTAATTGTAGATTGGACTAT 57.367 29.630 0.00 0.00 38.17 2.12
258 267 7.944729 ATTGCAACTAATTGTAGATTGGACT 57.055 32.000 0.00 0.00 38.17 3.85
259 268 9.884465 GATATTGCAACTAATTGTAGATTGGAC 57.116 33.333 0.00 0.00 38.17 4.02
260 269 9.851686 AGATATTGCAACTAATTGTAGATTGGA 57.148 29.630 0.00 0.00 38.17 3.53
272 281 9.582431 GGCGATTAGTATAGATATTGCAACTAA 57.418 33.333 0.00 3.38 34.84 2.24
273 282 8.967918 AGGCGATTAGTATAGATATTGCAACTA 58.032 33.333 0.00 0.00 0.00 2.24
274 283 7.841956 AGGCGATTAGTATAGATATTGCAACT 58.158 34.615 0.00 0.00 0.00 3.16
275 284 8.383619 CAAGGCGATTAGTATAGATATTGCAAC 58.616 37.037 0.00 0.00 0.00 4.17
281 290 9.026121 AGACAACAAGGCGATTAGTATAGATAT 57.974 33.333 0.00 0.00 0.00 1.63
284 293 6.096423 ACAGACAACAAGGCGATTAGTATAGA 59.904 38.462 0.00 0.00 0.00 1.98
288 297 4.219944 AGACAGACAACAAGGCGATTAGTA 59.780 41.667 0.00 0.00 0.00 1.82
290 299 3.589988 AGACAGACAACAAGGCGATTAG 58.410 45.455 0.00 0.00 0.00 1.73
298 307 1.871080 AAGCGGAGACAGACAACAAG 58.129 50.000 0.00 0.00 0.00 3.16
302 311 4.220821 AGATTTCTAAGCGGAGACAGACAA 59.779 41.667 0.00 0.00 0.00 3.18
312 322 3.797039 TCATCCACAGATTTCTAAGCGG 58.203 45.455 0.00 0.00 0.00 5.52
313 323 5.052481 TGATCATCCACAGATTTCTAAGCG 58.948 41.667 0.00 0.00 0.00 4.68
323 333 3.307691 GGTTTCACCTGATCATCCACAGA 60.308 47.826 0.00 0.00 34.73 3.41
324 334 3.012518 GGTTTCACCTGATCATCCACAG 58.987 50.000 0.00 0.00 34.73 3.66
337 347 3.383185 TGTTCTGTCCAAATGGTTTCACC 59.617 43.478 0.00 0.00 39.22 4.02
339 349 4.277476 AGTGTTCTGTCCAAATGGTTTCA 58.723 39.130 0.00 0.00 36.34 2.69
343 360 4.974645 TCTAGTGTTCTGTCCAAATGGT 57.025 40.909 0.00 0.00 36.34 3.55
350 367 4.694339 ACACAACTTCTAGTGTTCTGTCC 58.306 43.478 0.00 0.00 46.04 4.02
358 375 5.230182 TGCATACTGACACAACTTCTAGTG 58.770 41.667 0.00 0.00 41.40 2.74
369 386 2.293122 TGTTTTGCCTGCATACTGACAC 59.707 45.455 0.00 0.00 0.00 3.67
371 388 3.641437 TTGTTTTGCCTGCATACTGAC 57.359 42.857 0.00 0.00 0.00 3.51
373 390 3.715495 TGTTTGTTTTGCCTGCATACTG 58.285 40.909 0.00 0.00 0.00 2.74
374 391 4.119136 GTTGTTTGTTTTGCCTGCATACT 58.881 39.130 0.00 0.00 0.00 2.12
375 392 3.868077 TGTTGTTTGTTTTGCCTGCATAC 59.132 39.130 0.00 0.00 0.00 2.39
376 393 4.128925 TGTTGTTTGTTTTGCCTGCATA 57.871 36.364 0.00 0.00 0.00 3.14
378 395 2.462456 TGTTGTTTGTTTTGCCTGCA 57.538 40.000 0.00 0.00 0.00 4.41
379 396 4.119136 AGTATGTTGTTTGTTTTGCCTGC 58.881 39.130 0.00 0.00 0.00 4.85
380 397 5.402270 GCTAGTATGTTGTTTGTTTTGCCTG 59.598 40.000 0.00 0.00 0.00 4.85
382 399 5.285651 TGCTAGTATGTTGTTTGTTTTGCC 58.714 37.500 0.00 0.00 0.00 4.52
383 400 6.562086 GCTTGCTAGTATGTTGTTTGTTTTGC 60.562 38.462 0.00 0.00 0.00 3.68
386 2354 6.142818 TGCTTGCTAGTATGTTGTTTGTTT 57.857 33.333 0.00 0.00 0.00 2.83
388 2356 5.766150 TTGCTTGCTAGTATGTTGTTTGT 57.234 34.783 0.00 0.00 0.00 2.83
412 2380 0.692476 AAAGGGGGAGCCAAAATTGC 59.308 50.000 0.00 0.00 0.00 3.56
418 2386 2.573463 AGAGATAAAAGGGGGAGCCAA 58.427 47.619 0.00 0.00 0.00 4.52
432 2400 9.561069 GCTTAAGGATGGTTTATGAAAGAGATA 57.439 33.333 4.29 0.00 0.00 1.98
596 2611 2.952310 GGTTTCTTGCTGAGGTTCTTGT 59.048 45.455 0.00 0.00 0.00 3.16
598 2613 3.297134 TGGTTTCTTGCTGAGGTTCTT 57.703 42.857 0.00 0.00 0.00 2.52
635 2659 4.129148 GATGGGTGGGTGGGGAGC 62.129 72.222 0.00 0.00 0.00 4.70
636 2660 3.797353 CGATGGGTGGGTGGGGAG 61.797 72.222 0.00 0.00 0.00 4.30
637 2661 4.667935 ACGATGGGTGGGTGGGGA 62.668 66.667 0.00 0.00 0.00 4.81
742 2777 1.601759 GCAGAGCAGTCTTGGGCAA 60.602 57.895 0.00 0.00 0.00 4.52
1274 3417 4.056125 TGCGTGCTAGCAGCGACT 62.056 61.111 30.55 0.00 46.26 4.18
1411 3574 4.564041 AGCCAATATAATCTGAGCTCACG 58.436 43.478 13.74 9.51 0.00 4.35
1439 3602 6.039047 CAGCTGTATAAGATCAAATGTTGGCT 59.961 38.462 5.25 0.00 0.00 4.75
1493 3671 7.751047 TCTTGCGACAGAAATATACTGTAAC 57.249 36.000 13.16 9.90 46.57 2.50
1505 3683 7.814587 CCACTATTCATATATCTTGCGACAGAA 59.185 37.037 0.00 0.00 0.00 3.02
1594 4185 8.316214 ACCATCATCTCAAAACTATGCAAAAAT 58.684 29.630 0.00 0.00 0.00 1.82
1629 4220 7.982354 ACAGTAAAACTAGATATGTCAAGAGCC 59.018 37.037 0.00 0.00 0.00 4.70
1815 4845 8.201464 TGCAATATTCTATCCTCTAACGAACAA 58.799 33.333 0.00 0.00 0.00 2.83
1861 5300 5.061435 CCTTATCACATCACGATTAGATGCG 59.939 44.000 0.00 0.00 45.19 4.73
1935 5376 5.668080 TGTATGTGGTGGGGAGATATGTTAA 59.332 40.000 0.00 0.00 0.00 2.01
2038 5479 5.634118 TGTCCATCTCAAGGAAAGAAATGT 58.366 37.500 0.00 0.00 36.80 2.71
2039 5480 6.561614 CATGTCCATCTCAAGGAAAGAAATG 58.438 40.000 0.00 0.00 36.80 2.32
2061 5502 7.512130 TCATATGAACTAGACCATGAAAGCAT 58.488 34.615 1.98 0.00 34.29 3.79
2062 5503 6.888105 TCATATGAACTAGACCATGAAAGCA 58.112 36.000 1.98 0.00 0.00 3.91
2123 5565 8.791327 TTGACATACAAACACTGATCATACAT 57.209 30.769 0.00 0.00 35.39 2.29
2142 5584 1.981256 ACCAAAGCGGAACTTGACAT 58.019 45.000 0.00 0.00 39.09 3.06
2143 5585 1.673920 GAACCAAAGCGGAACTTGACA 59.326 47.619 0.00 0.00 39.09 3.58
2227 5671 4.327982 TCATCTAGCAATCTAGCACCAC 57.672 45.455 0.00 0.00 41.59 4.16
2246 5690 7.559170 TGATATCTCTTCTCTGAACACTGATCA 59.441 37.037 3.98 0.00 0.00 2.92
2316 5768 7.407393 ACTGTACTTCAGAGTAATAACCCTC 57.593 40.000 1.79 0.00 46.27 4.30
2334 5786 5.533482 CCAGCTGATTATCTGGTACTGTAC 58.467 45.833 17.39 9.46 43.66 2.90
2369 5821 3.119884 TGCTCAAAGTCAACGCCAATATG 60.120 43.478 0.00 0.00 0.00 1.78
2424 5876 0.166814 GAGCGCAAACATCTGGACAC 59.833 55.000 11.47 0.00 0.00 3.67
2461 5913 0.462047 CAGGACCCATGTACGGAAGC 60.462 60.000 0.00 0.00 0.00 3.86
2550 6002 1.826054 CCCACGACCACCAAGCAAA 60.826 57.895 0.00 0.00 0.00 3.68
2551 6003 2.203280 CCCACGACCACCAAGCAA 60.203 61.111 0.00 0.00 0.00 3.91
2597 6049 0.387878 GCATACTGCTCCTCGATCCG 60.388 60.000 0.00 0.00 40.96 4.18
2750 6327 4.809958 CCAGTGAGAGAACATGATGATGTC 59.190 45.833 0.00 0.00 42.30 3.06
2841 6418 6.153851 CGTACCCATATCCACTATCCAATACA 59.846 42.308 0.00 0.00 0.00 2.29
2852 6429 4.213482 GCAAGAATTCGTACCCATATCCAC 59.787 45.833 0.00 0.00 0.00 4.02
2853 6430 4.385825 GCAAGAATTCGTACCCATATCCA 58.614 43.478 0.00 0.00 0.00 3.41
2854 6431 3.751698 GGCAAGAATTCGTACCCATATCC 59.248 47.826 0.00 0.00 0.00 2.59
2855 6432 4.642429 AGGCAAGAATTCGTACCCATATC 58.358 43.478 6.99 0.00 0.00 1.63
2856 6433 4.348168 AGAGGCAAGAATTCGTACCCATAT 59.652 41.667 6.99 0.00 0.00 1.78
2857 6434 3.709653 AGAGGCAAGAATTCGTACCCATA 59.290 43.478 6.99 0.00 0.00 2.74
2858 6435 2.505819 AGAGGCAAGAATTCGTACCCAT 59.494 45.455 6.99 0.00 0.00 4.00
2859 6436 1.906574 AGAGGCAAGAATTCGTACCCA 59.093 47.619 6.99 0.00 0.00 4.51
2903 6480 5.881637 ACAAATTTCGCAAATGTACACAC 57.118 34.783 0.00 0.00 0.00 3.82
2907 7280 7.271868 GGGTTAGTACAAATTTCGCAAATGTAC 59.728 37.037 14.77 14.77 33.68 2.90
2971 7345 5.067413 TGTTCTCCTAGTTGCTTATACCTCG 59.933 44.000 0.00 0.00 0.00 4.63
3038 7412 0.725784 CGTTTGATTGCTGACGGTGC 60.726 55.000 0.00 0.00 32.29 5.01
3046 7420 4.043750 CACACATTTGTCGTTTGATTGCT 58.956 39.130 0.00 0.00 31.66 3.91
3152 7526 5.509501 GCAAAAGACAAGTTTCCATGGATCA 60.510 40.000 17.06 2.15 0.00 2.92
3300 7674 8.214364 TCATGTTATGCATATGTTTAGGTGGTA 58.786 33.333 7.36 0.00 35.74 3.25
3340 7729 2.092323 GCATTTAGTCTCGGGGCTTTT 58.908 47.619 0.00 0.00 0.00 2.27
3378 7767 2.360165 CTGCTATCCCAGATTTGCAACC 59.640 50.000 0.00 0.00 34.77 3.77
3379 7768 3.282021 TCTGCTATCCCAGATTTGCAAC 58.718 45.455 0.00 0.00 36.96 4.17
3417 7970 4.335594 GCATACAGAACCTACATTGTTCCC 59.664 45.833 0.00 0.00 42.41 3.97
3549 8102 4.350225 ACACCTACTCCGTCCTAGATCATA 59.650 45.833 0.00 0.00 0.00 2.15
3550 8103 3.138653 ACACCTACTCCGTCCTAGATCAT 59.861 47.826 0.00 0.00 0.00 2.45
3551 8104 2.508716 ACACCTACTCCGTCCTAGATCA 59.491 50.000 0.00 0.00 0.00 2.92
3552 8105 3.140623 GACACCTACTCCGTCCTAGATC 58.859 54.545 0.00 0.00 0.00 2.75
3553 8106 2.778850 AGACACCTACTCCGTCCTAGAT 59.221 50.000 0.00 0.00 0.00 1.98
3554 8107 2.093075 CAGACACCTACTCCGTCCTAGA 60.093 54.545 0.00 0.00 0.00 2.43
3555 8108 2.290464 CAGACACCTACTCCGTCCTAG 58.710 57.143 0.00 0.00 0.00 3.02
3556 8109 1.681166 GCAGACACCTACTCCGTCCTA 60.681 57.143 0.00 0.00 0.00 2.94
3557 8110 0.966370 GCAGACACCTACTCCGTCCT 60.966 60.000 0.00 0.00 0.00 3.85
3558 8111 1.248785 TGCAGACACCTACTCCGTCC 61.249 60.000 0.00 0.00 0.00 4.79
3559 8112 0.818296 ATGCAGACACCTACTCCGTC 59.182 55.000 0.00 0.00 0.00 4.79
3560 8113 2.139323 TATGCAGACACCTACTCCGT 57.861 50.000 0.00 0.00 0.00 4.69
3688 8241 2.919494 CGGTTTGGCTCTTGGTGGC 61.919 63.158 0.00 0.00 0.00 5.01
3753 8306 0.304098 GCATGCGCTCTGACAGATTC 59.696 55.000 9.73 0.33 34.30 2.52
3771 8324 1.276844 GAGTGGTGCGCGATTATGC 59.723 57.895 12.10 0.00 0.00 3.14
3805 8358 2.099141 ATGTATGATGGGAATCGGCG 57.901 50.000 0.00 0.00 0.00 6.46
3828 8384 3.119602 TCGCTAGTTATTCAGCTCGTTGT 60.120 43.478 0.00 0.00 35.57 3.32
3830 8386 3.128938 ACTCGCTAGTTATTCAGCTCGTT 59.871 43.478 0.00 0.00 35.57 3.85
3894 8450 2.607635 GCAGAGTTCACAGACGTTTCAA 59.392 45.455 0.00 0.00 0.00 2.69
3923 8482 6.715718 CCTTGGTCGATCCTCTTATCTTACTA 59.284 42.308 0.00 0.00 37.07 1.82
3924 8483 5.536916 CCTTGGTCGATCCTCTTATCTTACT 59.463 44.000 0.00 0.00 37.07 2.24
3925 8484 5.535406 TCCTTGGTCGATCCTCTTATCTTAC 59.465 44.000 0.00 0.00 37.07 2.34
3926 8485 5.702266 TCCTTGGTCGATCCTCTTATCTTA 58.298 41.667 0.00 0.00 37.07 2.10
3927 8486 4.547671 TCCTTGGTCGATCCTCTTATCTT 58.452 43.478 0.00 0.00 37.07 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.