Multiple sequence alignment - TraesCS6A01G296900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G296900 chr6A 100.000 3195 0 0 1 3195 530253944 530250750 0.000000e+00 5901.0
1 TraesCS6A01G296900 chr6A 96.820 283 9 0 2682 2964 562065418 562065700 1.040000e-129 473.0
2 TraesCS6A01G296900 chr6D 94.330 1746 79 6 781 2510 385787331 385785590 0.000000e+00 2658.0
3 TraesCS6A01G296900 chr6D 93.780 209 12 1 2963 3171 385723786 385723579 2.390000e-81 313.0
4 TraesCS6A01G296900 chr6D 93.194 191 13 0 2499 2689 385723974 385723784 6.750000e-72 281.0
5 TraesCS6A01G296900 chr6B 93.071 1371 67 10 962 2314 576269407 576268047 0.000000e+00 1980.0
6 TraesCS6A01G296900 chr6B 84.058 621 97 2 1 620 702198771 702198152 5.900000e-167 597.0
7 TraesCS6A01G296900 chr6B 92.698 315 14 6 657 968 576276206 576275898 2.260000e-121 446.0
8 TraesCS6A01G296900 chr6B 85.106 329 40 6 2363 2689 576267114 576266793 8.550000e-86 327.0
9 TraesCS6A01G296900 chr6B 91.388 209 18 0 2963 3171 576266795 576266587 1.450000e-73 287.0
10 TraesCS6A01G296900 chr6B 87.500 64 7 1 2386 2448 119972826 119972889 4.420000e-09 73.1
11 TraesCS6A01G296900 chr5A 92.195 615 48 0 1 615 475600740 475600126 0.000000e+00 870.0
12 TraesCS6A01G296900 chr5A 89.268 615 64 2 2 615 673677596 673678209 0.000000e+00 769.0
13 TraesCS6A01G296900 chr5A 97.491 279 7 0 2685 2963 409134514 409134236 8.020000e-131 477.0
14 TraesCS6A01G296900 chr5A 90.698 43 3 1 627 669 34826730 34826689 4.450000e-04 56.5
15 TraesCS6A01G296900 chr4A 89.448 616 65 0 1 616 506703894 506703279 0.000000e+00 778.0
16 TraesCS6A01G296900 chr4A 89.867 375 35 3 1008 1381 41920260 41919888 2.230000e-131 479.0
17 TraesCS6A01G296900 chr4A 97.133 279 8 0 2685 2963 448681554 448681832 3.730000e-129 472.0
18 TraesCS6A01G296900 chr7B 84.943 611 89 3 5 614 697865283 697864675 1.630000e-172 616.0
19 TraesCS6A01G296900 chr7B 97.482 278 7 0 2687 2964 164593512 164593235 2.880000e-130 475.0
20 TraesCS6A01G296900 chr7B 97.153 281 8 0 2683 2963 603479604 603479324 2.880000e-130 475.0
21 TraesCS6A01G296900 chrUn 86.406 537 70 3 80 615 240121404 240120870 4.590000e-163 584.0
22 TraesCS6A01G296900 chrUn 86.296 540 71 3 77 615 404913970 404914507 4.590000e-163 584.0
23 TraesCS6A01G296900 chrUn 92.308 52 1 3 2397 2447 76985767 76985816 1.590000e-08 71.3
24 TraesCS6A01G296900 chrUn 92.308 52 1 3 2397 2447 76996752 76996801 1.590000e-08 71.3
25 TraesCS6A01G296900 chrUn 92.308 52 1 3 2397 2447 77015887 77015936 1.590000e-08 71.3
26 TraesCS6A01G296900 chrUn 92.308 52 1 3 2397 2447 341413862 341413911 1.590000e-08 71.3
27 TraesCS6A01G296900 chrUn 92.308 52 1 3 2397 2447 399860355 399860306 1.590000e-08 71.3
28 TraesCS6A01G296900 chr2B 86.406 537 70 3 80 615 77825501 77824967 4.590000e-163 584.0
29 TraesCS6A01G296900 chr2B 86.220 537 71 3 80 615 77869438 77868904 2.140000e-161 579.0
30 TraesCS6A01G296900 chr2B 96.786 280 8 1 2685 2964 679893989 679893711 1.740000e-127 466.0
31 TraesCS6A01G296900 chr2B 78.400 375 72 6 1010 1376 39978551 39978178 5.330000e-58 235.0
32 TraesCS6A01G296900 chr4D 90.349 373 33 3 1008 1379 422548511 422548881 1.330000e-133 486.0
33 TraesCS6A01G296900 chr5B 97.173 283 8 0 2685 2967 657275242 657275524 2.230000e-131 479.0
34 TraesCS6A01G296900 chr5B 97.122 278 8 0 2684 2961 267776746 267777023 1.340000e-128 470.0
35 TraesCS6A01G296900 chr5B 96.786 280 9 0 2685 2964 46054121 46054400 4.830000e-128 468.0
36 TraesCS6A01G296900 chr4B 89.655 377 35 4 1008 1381 519403873 519404248 8.020000e-131 477.0
37 TraesCS6A01G296900 chr2A 79.625 373 70 3 1010 1376 27277241 27276869 2.440000e-66 263.0
38 TraesCS6A01G296900 chr2A 78.075 374 70 9 1012 1376 27127074 27126704 3.210000e-55 226.0
39 TraesCS6A01G296900 chr2A 74.409 254 55 9 1919 2167 27124965 27124717 2.030000e-17 100.0
40 TraesCS6A01G296900 chr2D 78.723 376 68 9 1010 1376 24878059 24878431 1.150000e-59 241.0
41 TraesCS6A01G296900 chr2D 74.194 248 54 9 1919 2161 24878928 24879170 9.440000e-16 95.3
42 TraesCS6A01G296900 chr7D 77.860 271 44 11 1543 1808 37654136 37654395 1.530000e-33 154.0
43 TraesCS6A01G296900 chr7D 100.000 29 0 0 627 655 611354388 611354360 2.000000e-03 54.7
44 TraesCS6A01G296900 chr7D 100.000 29 0 0 627 655 611354422 611354394 2.000000e-03 54.7
45 TraesCS6A01G296900 chr3B 89.091 55 3 2 2403 2454 506972676 506972622 7.400000e-07 65.8
46 TraesCS6A01G296900 chr7A 100.000 29 0 0 627 655 127657978 127658006 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G296900 chr6A 530250750 530253944 3194 True 5901.000000 5901 100.000 1 3195 1 chr6A.!!$R1 3194
1 TraesCS6A01G296900 chr6D 385785590 385787331 1741 True 2658.000000 2658 94.330 781 2510 1 chr6D.!!$R1 1729
2 TraesCS6A01G296900 chr6B 576266587 576269407 2820 True 864.666667 1980 89.855 962 3171 3 chr6B.!!$R3 2209
3 TraesCS6A01G296900 chr6B 702198152 702198771 619 True 597.000000 597 84.058 1 620 1 chr6B.!!$R2 619
4 TraesCS6A01G296900 chr5A 475600126 475600740 614 True 870.000000 870 92.195 1 615 1 chr5A.!!$R3 614
5 TraesCS6A01G296900 chr5A 673677596 673678209 613 False 769.000000 769 89.268 2 615 1 chr5A.!!$F1 613
6 TraesCS6A01G296900 chr4A 506703279 506703894 615 True 778.000000 778 89.448 1 616 1 chr4A.!!$R2 615
7 TraesCS6A01G296900 chr7B 697864675 697865283 608 True 616.000000 616 84.943 5 614 1 chr7B.!!$R3 609
8 TraesCS6A01G296900 chrUn 240120870 240121404 534 True 584.000000 584 86.406 80 615 1 chrUn.!!$R1 535
9 TraesCS6A01G296900 chrUn 404913970 404914507 537 False 584.000000 584 86.296 77 615 1 chrUn.!!$F5 538
10 TraesCS6A01G296900 chr2B 77824967 77825501 534 True 584.000000 584 86.406 80 615 1 chr2B.!!$R2 535
11 TraesCS6A01G296900 chr2B 77868904 77869438 534 True 579.000000 579 86.220 80 615 1 chr2B.!!$R3 535


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 431 0.034337 GGCACGTGGGTGTAAGAGAA 59.966 55.0 18.88 0.0 46.13 2.87 F
715 716 0.598680 GATCTCGCCACCGGATCAAG 60.599 60.0 9.46 0.0 39.17 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1358 1383 0.323629 TTACCAGAAGGCAGGGTTCG 59.676 55.0 0.0 0.0 39.06 3.95 R
2622 3537 0.313672 TCCGTCCTGCAATTTTGTGC 59.686 50.0 0.0 0.0 45.15 4.57 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 8.270744 GGATATAATCAAGGGCAAGATGTCTAT 58.729 37.037 0.00 0.00 0.00 1.98
63 64 0.250467 ATGTTCGTTGCTGAGCCAGT 60.250 50.000 0.23 0.00 33.43 4.00
118 119 0.409484 CAAAACCCTCCCCTGGTCAT 59.591 55.000 0.00 0.00 34.15 3.06
128 129 1.153369 CCTGGTCATACCGCACTGG 60.153 63.158 0.00 0.00 42.58 4.00
169 170 2.758089 GGCAGATGGTTCAGCAGCG 61.758 63.158 0.00 0.00 36.18 5.18
187 188 4.864334 GCGGGGATGGTGCTGAGG 62.864 72.222 0.00 0.00 0.00 3.86
231 232 1.260206 GCGGCGTATCGATGTATCTG 58.740 55.000 8.54 1.02 0.00 2.90
241 242 6.129431 CGTATCGATGTATCTGTAACTGCAAC 60.129 42.308 8.54 0.00 0.00 4.17
328 329 4.601406 TGGGCCTATTATTGTCCAAACT 57.399 40.909 4.53 0.00 0.00 2.66
337 338 5.524511 TTATTGTCCAAACTGATTCGTCG 57.475 39.130 0.00 0.00 0.00 5.12
341 342 2.803956 GTCCAAACTGATTCGTCGGAAA 59.196 45.455 0.00 0.00 35.40 3.13
344 345 3.120649 CCAAACTGATTCGTCGGAAACTC 60.121 47.826 0.00 0.00 35.40 3.01
358 359 2.160417 GGAAACTCTCATGGCGTTGAAG 59.840 50.000 0.00 0.00 0.00 3.02
359 360 2.839486 AACTCTCATGGCGTTGAAGA 57.161 45.000 0.00 0.00 0.00 2.87
407 408 5.692115 TGGACATTTGGTAGCTGAGATTA 57.308 39.130 0.00 0.00 0.00 1.75
416 417 2.593346 AGCTGAGATTAAGAGGCACG 57.407 50.000 0.00 0.00 0.00 5.34
430 431 0.034337 GGCACGTGGGTGTAAGAGAA 59.966 55.000 18.88 0.00 46.13 2.87
448 449 9.634300 GTAAGAGAATTTATTCCGTCGAAAATC 57.366 33.333 0.00 0.00 37.51 2.17
458 459 2.159707 CCGTCGAAAATCAAGCGTGAAT 60.160 45.455 6.39 0.00 37.30 2.57
495 496 6.393171 CAGATCGATTGGCTTCATATAGTCA 58.607 40.000 0.00 0.00 0.00 3.41
498 499 8.922237 AGATCGATTGGCTTCATATAGTCATAT 58.078 33.333 0.00 0.00 28.36 1.78
559 560 1.574428 CGTGGAGGAACTTTTGCCG 59.426 57.895 0.00 0.00 41.55 5.69
563 564 1.202830 TGGAGGAACTTTTGCCGCTTA 60.203 47.619 0.00 0.00 41.55 3.09
580 581 4.035208 CCGCTTAATTGTAACCCTGTGATC 59.965 45.833 0.00 0.00 0.00 2.92
604 605 9.768215 ATCTTGGAATAAAATCTCTTTTACCCA 57.232 29.630 8.50 8.50 39.10 4.51
638 639 5.925189 AATTAAAATGTATCGTGCGTTGC 57.075 34.783 0.00 0.00 0.00 4.17
639 640 2.979401 AAAATGTATCGTGCGTTGCA 57.021 40.000 0.00 0.00 35.60 4.08
659 660 4.331962 GCACGTGCAAACTTACTAATAGC 58.668 43.478 34.52 0.72 41.59 2.97
660 661 4.726876 GCACGTGCAAACTTACTAATAGCC 60.727 45.833 34.52 0.00 41.59 3.93
661 662 4.630069 CACGTGCAAACTTACTAATAGCCT 59.370 41.667 0.82 0.00 0.00 4.58
662 663 5.808540 CACGTGCAAACTTACTAATAGCCTA 59.191 40.000 0.82 0.00 0.00 3.93
663 664 6.311935 CACGTGCAAACTTACTAATAGCCTAA 59.688 38.462 0.82 0.00 0.00 2.69
664 665 6.875195 ACGTGCAAACTTACTAATAGCCTAAA 59.125 34.615 0.00 0.00 0.00 1.85
665 666 7.388500 ACGTGCAAACTTACTAATAGCCTAAAA 59.612 33.333 0.00 0.00 0.00 1.52
666 667 8.395633 CGTGCAAACTTACTAATAGCCTAAAAT 58.604 33.333 0.00 0.00 0.00 1.82
667 668 9.503427 GTGCAAACTTACTAATAGCCTAAAATG 57.497 33.333 0.00 0.00 0.00 2.32
668 669 9.456147 TGCAAACTTACTAATAGCCTAAAATGA 57.544 29.630 0.00 0.00 0.00 2.57
669 670 9.937175 GCAAACTTACTAATAGCCTAAAATGAG 57.063 33.333 0.00 0.00 0.00 2.90
702 703 2.584418 CCGCAGGCACAGATCTCG 60.584 66.667 0.00 0.00 46.14 4.04
703 704 3.260483 CGCAGGCACAGATCTCGC 61.260 66.667 5.26 5.26 0.00 5.03
704 705 2.894387 GCAGGCACAGATCTCGCC 60.894 66.667 20.68 20.68 46.62 5.54
707 708 2.512515 GGCACAGATCTCGCCACC 60.513 66.667 22.52 4.77 45.52 4.61
708 709 2.887568 GCACAGATCTCGCCACCG 60.888 66.667 0.00 0.00 0.00 4.94
709 710 2.202797 CACAGATCTCGCCACCGG 60.203 66.667 0.00 0.00 34.56 5.28
710 711 2.362503 ACAGATCTCGCCACCGGA 60.363 61.111 9.46 0.00 34.56 5.14
711 712 1.758514 ACAGATCTCGCCACCGGAT 60.759 57.895 9.46 0.00 34.56 4.18
712 713 1.006805 CAGATCTCGCCACCGGATC 60.007 63.158 9.46 0.00 39.40 3.36
713 714 1.455773 AGATCTCGCCACCGGATCA 60.456 57.895 9.46 0.00 40.48 2.92
714 715 1.043116 AGATCTCGCCACCGGATCAA 61.043 55.000 9.46 0.00 40.48 2.57
715 716 0.598680 GATCTCGCCACCGGATCAAG 60.599 60.000 9.46 0.00 39.17 3.02
716 717 1.330655 ATCTCGCCACCGGATCAAGT 61.331 55.000 9.46 0.00 34.56 3.16
717 718 1.811266 CTCGCCACCGGATCAAGTG 60.811 63.158 9.46 7.25 34.56 3.16
718 719 3.499737 CGCCACCGGATCAAGTGC 61.500 66.667 9.46 0.00 32.48 4.40
719 720 3.499737 GCCACCGGATCAAGTGCG 61.500 66.667 9.46 4.41 41.82 5.34
720 721 2.047274 CCACCGGATCAAGTGCGT 60.047 61.111 9.46 0.00 40.39 5.24
721 722 2.390599 CCACCGGATCAAGTGCGTG 61.391 63.158 9.46 0.00 40.39 5.34
722 723 2.742372 ACCGGATCAAGTGCGTGC 60.742 61.111 9.46 0.00 40.39 5.34
723 724 3.499737 CCGGATCAAGTGCGTGCC 61.500 66.667 0.00 0.00 40.39 5.01
724 725 2.741985 CGGATCAAGTGCGTGCCA 60.742 61.111 0.00 0.00 36.85 4.92
725 726 2.870372 GGATCAAGTGCGTGCCAC 59.130 61.111 0.00 0.00 45.01 5.01
726 727 2.690778 GGATCAAGTGCGTGCCACC 61.691 63.158 0.00 0.00 45.83 4.61
727 728 3.027170 GATCAAGTGCGTGCCACCG 62.027 63.158 0.00 0.00 45.83 4.94
728 729 3.825160 ATCAAGTGCGTGCCACCGT 62.825 57.895 0.00 0.00 45.83 4.83
729 730 4.312231 CAAGTGCGTGCCACCGTG 62.312 66.667 0.00 0.00 45.83 4.94
732 733 4.973055 GTGCGTGCCACCGTGGTA 62.973 66.667 18.95 12.07 40.46 3.25
751 752 5.838529 TGGTACACGATCGATTATCATTGT 58.161 37.500 24.34 15.00 35.58 2.71
752 753 6.277605 TGGTACACGATCGATTATCATTGTT 58.722 36.000 24.34 0.94 34.11 2.83
753 754 6.419710 TGGTACACGATCGATTATCATTGTTC 59.580 38.462 24.34 10.34 34.11 3.18
754 755 5.907197 ACACGATCGATTATCATTGTTCC 57.093 39.130 24.34 0.00 33.87 3.62
755 756 5.356426 ACACGATCGATTATCATTGTTCCA 58.644 37.500 24.34 0.00 33.87 3.53
756 757 5.991606 ACACGATCGATTATCATTGTTCCAT 59.008 36.000 24.34 0.00 33.87 3.41
757 758 6.483307 ACACGATCGATTATCATTGTTCCATT 59.517 34.615 24.34 0.00 33.87 3.16
758 759 7.655732 ACACGATCGATTATCATTGTTCCATTA 59.344 33.333 24.34 0.00 33.87 1.90
759 760 8.659491 CACGATCGATTATCATTGTTCCATTAT 58.341 33.333 24.34 0.00 33.87 1.28
760 761 8.659491 ACGATCGATTATCATTGTTCCATTATG 58.341 33.333 24.34 0.00 33.87 1.90
761 762 7.637519 CGATCGATTATCATTGTTCCATTATGC 59.362 37.037 10.26 0.00 33.87 3.14
762 763 6.830736 TCGATTATCATTGTTCCATTATGCG 58.169 36.000 0.00 0.00 0.00 4.73
763 764 6.426633 TCGATTATCATTGTTCCATTATGCGT 59.573 34.615 0.00 0.00 0.00 5.24
764 765 7.041440 TCGATTATCATTGTTCCATTATGCGTT 60.041 33.333 0.00 0.00 0.00 4.84
765 766 8.227119 CGATTATCATTGTTCCATTATGCGTTA 58.773 33.333 0.00 0.00 0.00 3.18
766 767 9.891828 GATTATCATTGTTCCATTATGCGTTAA 57.108 29.630 0.00 0.00 0.00 2.01
767 768 9.897744 ATTATCATTGTTCCATTATGCGTTAAG 57.102 29.630 0.00 0.00 0.00 1.85
785 786 6.022821 CGTTAAGCTTAGTCTAGTCACTGAC 58.977 44.000 6.24 0.38 0.00 3.51
795 796 4.075682 TCTAGTCACTGACCTTCTGACAG 58.924 47.826 5.51 0.00 37.39 3.51
831 832 1.352156 CTCGCGGGAACAGTTAGCAC 61.352 60.000 0.00 0.00 0.00 4.40
846 847 1.442769 AGCACAGACAAATAGCACGG 58.557 50.000 0.00 0.00 0.00 4.94
891 892 2.032924 AGAAAAACGAAACCAAGAGCGG 59.967 45.455 0.00 0.00 0.00 5.52
899 900 1.237285 AACCAAGAGCGGCACATGAC 61.237 55.000 0.00 0.00 0.00 3.06
909 910 1.656652 GGCACATGACGAACAGCTAT 58.343 50.000 0.00 0.00 0.00 2.97
943 944 1.537135 CCGCTGACCTTTAGCTAGCTC 60.537 57.143 23.26 6.47 39.00 4.09
957 958 4.083565 AGCTAGCTCTATAAGTACCTGCC 58.916 47.826 12.68 0.00 0.00 4.85
999 1000 3.620488 TCACATATCAGAAGCCAAACCC 58.380 45.455 0.00 0.00 0.00 4.11
1028 1053 3.810812 GCAGCAGCTGATGGAGAC 58.189 61.111 31.37 12.53 37.91 3.36
1030 1055 1.521010 CAGCAGCTGATGGAGACCG 60.521 63.158 24.22 0.00 32.44 4.79
1314 1339 2.479650 CTCTCCGACGTCACCGAC 59.520 66.667 17.16 0.00 37.88 4.79
1413 1438 6.748333 TTTTTCTAGAATGATGGCTCACTG 57.252 37.500 5.89 0.00 33.22 3.66
1491 1516 4.735132 CGTGTCCGCCGTCCATGT 62.735 66.667 0.00 0.00 0.00 3.21
1808 1833 4.323477 TTCACCTTCGTGGCCGGG 62.323 66.667 2.18 0.00 40.65 5.73
1866 1891 2.678471 ATCATGTCTGATCGTGTGCA 57.322 45.000 0.00 0.00 37.58 4.57
1901 1926 2.803155 TTCTGACGCCACAGGGATGC 62.803 60.000 5.22 0.00 38.31 3.91
1916 1941 0.320421 GATGCCACCGCCGTATATGT 60.320 55.000 0.00 0.00 0.00 2.29
2011 2036 2.355837 GTGCTGTTCGTCTGCCGA 60.356 61.111 8.84 0.00 45.66 5.54
2018 2043 3.068691 TCGTCTGCCGAGGGAAGG 61.069 66.667 0.00 0.00 41.60 3.46
2101 2126 2.744202 ACCGTGTAAGAACGACGAGTAT 59.256 45.455 0.00 0.00 46.49 2.12
2205 2233 0.250038 ATGGAATGATCGAGCCCACG 60.250 55.000 0.00 0.00 0.00 4.94
2207 2235 0.179084 GGAATGATCGAGCCCACGAA 60.179 55.000 0.00 0.00 45.16 3.85
2262 2292 2.463752 AGCCTGTTAGACGGGTAATCA 58.536 47.619 7.70 0.00 46.46 2.57
2264 2294 2.822764 CCTGTTAGACGGGTAATCAGC 58.177 52.381 0.00 0.00 39.82 4.26
2395 3310 7.832187 CACTTATTTTACCAATTACTCCCTCCA 59.168 37.037 0.00 0.00 0.00 3.86
2534 3449 0.110486 GGAGACCCAACCACACATGT 59.890 55.000 0.00 0.00 0.00 3.21
2535 3450 1.478654 GGAGACCCAACCACACATGTT 60.479 52.381 0.00 0.00 0.00 2.71
2536 3451 1.608590 GAGACCCAACCACACATGTTG 59.391 52.381 0.00 0.00 42.11 3.33
2575 3490 6.351033 GCATGCCTATACCTAACATAGTAGCA 60.351 42.308 6.36 0.00 31.86 3.49
2601 3516 5.407995 GCTTAGCGAGATTATGAGCTTCAAT 59.592 40.000 0.00 0.00 40.73 2.57
2603 3518 7.277539 GCTTAGCGAGATTATGAGCTTCAATAT 59.722 37.037 0.00 0.00 40.73 1.28
2622 3537 0.934496 TTGAAGTTTCCGTGCTCGTG 59.066 50.000 7.47 0.00 35.01 4.35
2623 3538 1.204312 GAAGTTTCCGTGCTCGTGC 59.796 57.895 7.47 1.71 40.20 5.34
2640 3556 2.813100 GCACAAAATTGCAGGACGG 58.187 52.632 0.00 0.00 42.49 4.79
2644 3560 3.452474 CACAAAATTGCAGGACGGAAAA 58.548 40.909 0.00 0.00 0.00 2.29
2663 3579 1.923356 ACCAATCTTCCGGTTTGCAT 58.077 45.000 0.00 0.00 28.43 3.96
2667 3583 3.056607 CCAATCTTCCGGTTTGCATTCTT 60.057 43.478 0.00 0.00 0.00 2.52
2676 3592 3.426695 CGGTTTGCATTCTTCCTGATGAC 60.427 47.826 0.00 0.00 0.00 3.06
2678 3594 4.380233 GGTTTGCATTCTTCCTGATGACAG 60.380 45.833 0.00 0.00 43.12 3.51
2685 3601 6.519382 CATTCTTCCTGATGACAGCACTATA 58.481 40.000 0.00 0.00 42.25 1.31
2689 3605 3.070159 TCCTGATGACAGCACTATAAGGC 59.930 47.826 0.00 0.00 42.25 4.35
2690 3606 3.070734 CCTGATGACAGCACTATAAGGCT 59.929 47.826 0.00 0.00 42.25 4.58
2701 3617 6.000219 AGCACTATAAGGCTGATTGTAATGG 59.000 40.000 0.00 0.00 39.30 3.16
2702 3618 5.182001 GCACTATAAGGCTGATTGTAATGGG 59.818 44.000 0.00 0.00 0.00 4.00
2703 3619 5.707298 CACTATAAGGCTGATTGTAATGGGG 59.293 44.000 0.00 0.00 0.00 4.96
2704 3620 5.610982 ACTATAAGGCTGATTGTAATGGGGA 59.389 40.000 0.00 0.00 0.00 4.81
2705 3621 3.303351 AAGGCTGATTGTAATGGGGAG 57.697 47.619 0.00 0.00 0.00 4.30
2706 3622 2.208872 AGGCTGATTGTAATGGGGAGT 58.791 47.619 0.00 0.00 0.00 3.85
2707 3623 3.393687 AGGCTGATTGTAATGGGGAGTA 58.606 45.455 0.00 0.00 0.00 2.59
2708 3624 3.983410 AGGCTGATTGTAATGGGGAGTAT 59.017 43.478 0.00 0.00 0.00 2.12
2709 3625 4.042187 AGGCTGATTGTAATGGGGAGTATC 59.958 45.833 0.00 0.00 0.00 2.24
2710 3626 4.202461 GGCTGATTGTAATGGGGAGTATCA 60.202 45.833 0.00 0.00 36.25 2.15
2711 3627 5.515534 GGCTGATTGTAATGGGGAGTATCAT 60.516 44.000 0.00 0.00 36.25 2.45
2712 3628 6.296432 GGCTGATTGTAATGGGGAGTATCATA 60.296 42.308 0.00 0.00 36.25 2.15
2713 3629 7.341805 GCTGATTGTAATGGGGAGTATCATAT 58.658 38.462 0.00 0.00 36.25 1.78
2714 3630 8.486210 GCTGATTGTAATGGGGAGTATCATATA 58.514 37.037 0.00 0.00 36.25 0.86
2715 3631 9.823647 CTGATTGTAATGGGGAGTATCATATAC 57.176 37.037 0.00 0.00 36.25 1.47
2716 3632 9.560860 TGATTGTAATGGGGAGTATCATATACT 57.439 33.333 0.00 0.00 36.25 2.12
2725 3641 9.868160 TGGGGAGTATCATATACTAGTATCATG 57.132 37.037 18.68 17.93 36.25 3.07
2726 3642 8.798402 GGGGAGTATCATATACTAGTATCATGC 58.202 40.741 18.68 12.34 36.25 4.06
2727 3643 9.355916 GGGAGTATCATATACTAGTATCATGCA 57.644 37.037 18.68 1.71 36.25 3.96
2763 3679 8.924303 AGTGTATGATACTACCTCTTTAATGCA 58.076 33.333 4.03 0.00 0.00 3.96
2764 3680 9.712305 GTGTATGATACTACCTCTTTAATGCAT 57.288 33.333 4.03 0.00 0.00 3.96
2808 3724 9.710900 TCATGTAGTACTCTATTTATTGCCATG 57.289 33.333 0.00 0.00 0.00 3.66
2809 3725 7.962964 TGTAGTACTCTATTTATTGCCATGC 57.037 36.000 0.00 0.00 0.00 4.06
2810 3726 7.505258 TGTAGTACTCTATTTATTGCCATGCA 58.495 34.615 0.00 0.00 36.47 3.96
2811 3727 8.156820 TGTAGTACTCTATTTATTGCCATGCAT 58.843 33.333 0.00 0.00 38.76 3.96
2812 3728 7.444629 AGTACTCTATTTATTGCCATGCATG 57.555 36.000 20.19 20.19 38.76 4.06
2813 3729 7.226441 AGTACTCTATTTATTGCCATGCATGA 58.774 34.615 28.31 8.76 38.76 3.07
2814 3730 6.323203 ACTCTATTTATTGCCATGCATGAC 57.677 37.500 28.31 17.77 38.76 3.06
2815 3731 5.829391 ACTCTATTTATTGCCATGCATGACA 59.171 36.000 28.31 20.53 38.76 3.58
2816 3732 6.075762 TCTATTTATTGCCATGCATGACAC 57.924 37.500 28.31 16.49 38.76 3.67
2817 3733 4.739587 ATTTATTGCCATGCATGACACA 57.260 36.364 28.31 18.81 38.76 3.72
2818 3734 4.532314 TTTATTGCCATGCATGACACAA 57.468 36.364 28.31 25.14 38.76 3.33
2819 3735 4.532314 TTATTGCCATGCATGACACAAA 57.468 36.364 28.31 15.45 38.76 2.83
2820 3736 2.442212 TTGCCATGCATGACACAAAG 57.558 45.000 28.31 10.23 38.76 2.77
2821 3737 1.330234 TGCCATGCATGACACAAAGT 58.670 45.000 28.31 0.00 31.71 2.66
2822 3738 2.512705 TGCCATGCATGACACAAAGTA 58.487 42.857 28.31 5.91 31.71 2.24
2823 3739 2.488937 TGCCATGCATGACACAAAGTAG 59.511 45.455 28.31 8.01 31.71 2.57
2824 3740 2.733227 GCCATGCATGACACAAAGTAGC 60.733 50.000 28.31 14.15 0.00 3.58
2825 3741 2.488937 CCATGCATGACACAAAGTAGCA 59.511 45.455 28.31 0.00 37.13 3.49
2826 3742 3.129813 CCATGCATGACACAAAGTAGCAT 59.870 43.478 28.31 0.00 41.24 3.79
2827 3743 4.336153 CCATGCATGACACAAAGTAGCATA 59.664 41.667 28.31 0.00 39.67 3.14
2828 3744 5.505159 CCATGCATGACACAAAGTAGCATAG 60.505 44.000 28.31 0.74 39.67 2.23
2829 3745 3.374988 TGCATGACACAAAGTAGCATAGC 59.625 43.478 0.00 0.00 30.65 2.97
2830 3746 3.374988 GCATGACACAAAGTAGCATAGCA 59.625 43.478 0.00 0.00 0.00 3.49
2831 3747 4.036027 GCATGACACAAAGTAGCATAGCAT 59.964 41.667 0.00 0.00 0.00 3.79
2832 3748 5.449588 GCATGACACAAAGTAGCATAGCATT 60.450 40.000 0.00 0.00 0.00 3.56
2833 3749 6.558009 CATGACACAAAGTAGCATAGCATTT 58.442 36.000 0.00 0.00 0.00 2.32
2834 3750 7.679400 GCATGACACAAAGTAGCATAGCATTTA 60.679 37.037 0.00 0.00 0.00 1.40
2835 3751 7.864108 TGACACAAAGTAGCATAGCATTTAT 57.136 32.000 0.00 0.00 0.00 1.40
2836 3752 8.279970 TGACACAAAGTAGCATAGCATTTATT 57.720 30.769 0.00 0.00 0.00 1.40
2837 3753 9.389755 TGACACAAAGTAGCATAGCATTTATTA 57.610 29.630 0.00 0.00 0.00 0.98
2845 3761 9.534565 AGTAGCATAGCATTTATTATGATACGG 57.465 33.333 11.77 0.00 46.16 4.02
2846 3762 9.314321 GTAGCATAGCATTTATTATGATACGGT 57.686 33.333 4.73 0.00 38.55 4.83
2871 3787 5.908590 TCATGATATGATACTCCACCCTCT 58.091 41.667 0.00 0.00 33.59 3.69
2872 3788 5.954752 TCATGATATGATACTCCACCCTCTC 59.045 44.000 0.00 0.00 33.59 3.20
2873 3789 5.607168 TGATATGATACTCCACCCTCTCT 57.393 43.478 0.00 0.00 0.00 3.10
2874 3790 5.970289 TGATATGATACTCCACCCTCTCTT 58.030 41.667 0.00 0.00 0.00 2.85
2875 3791 6.385443 TGATATGATACTCCACCCTCTCTTT 58.615 40.000 0.00 0.00 0.00 2.52
2876 3792 6.495181 TGATATGATACTCCACCCTCTCTTTC 59.505 42.308 0.00 0.00 0.00 2.62
2877 3793 4.338795 TGATACTCCACCCTCTCTTTCT 57.661 45.455 0.00 0.00 0.00 2.52
2878 3794 4.689062 TGATACTCCACCCTCTCTTTCTT 58.311 43.478 0.00 0.00 0.00 2.52
2879 3795 4.712337 TGATACTCCACCCTCTCTTTCTTC 59.288 45.833 0.00 0.00 0.00 2.87
2880 3796 2.977808 ACTCCACCCTCTCTTTCTTCA 58.022 47.619 0.00 0.00 0.00 3.02
2881 3797 3.525862 ACTCCACCCTCTCTTTCTTCAT 58.474 45.455 0.00 0.00 0.00 2.57
2882 3798 3.913163 ACTCCACCCTCTCTTTCTTCATT 59.087 43.478 0.00 0.00 0.00 2.57
2883 3799 4.352298 ACTCCACCCTCTCTTTCTTCATTT 59.648 41.667 0.00 0.00 0.00 2.32
2884 3800 5.548056 ACTCCACCCTCTCTTTCTTCATTTA 59.452 40.000 0.00 0.00 0.00 1.40
2885 3801 6.044404 ACTCCACCCTCTCTTTCTTCATTTAA 59.956 38.462 0.00 0.00 0.00 1.52
2886 3802 7.032598 TCCACCCTCTCTTTCTTCATTTAAT 57.967 36.000 0.00 0.00 0.00 1.40
2887 3803 6.886459 TCCACCCTCTCTTTCTTCATTTAATG 59.114 38.462 0.00 0.00 0.00 1.90
2888 3804 6.405176 CCACCCTCTCTTTCTTCATTTAATGC 60.405 42.308 0.00 0.00 0.00 3.56
2889 3805 6.376581 CACCCTCTCTTTCTTCATTTAATGCT 59.623 38.462 0.00 0.00 0.00 3.79
2890 3806 7.554118 CACCCTCTCTTTCTTCATTTAATGCTA 59.446 37.037 0.00 0.00 0.00 3.49
2891 3807 8.277918 ACCCTCTCTTTCTTCATTTAATGCTAT 58.722 33.333 0.00 0.00 0.00 2.97
2892 3808 8.566260 CCCTCTCTTTCTTCATTTAATGCTATG 58.434 37.037 0.00 0.00 0.00 2.23
2893 3809 9.334947 CCTCTCTTTCTTCATTTAATGCTATGA 57.665 33.333 0.00 0.00 0.00 2.15
2895 3811 9.671279 TCTCTTTCTTCATTTAATGCTATGACA 57.329 29.630 0.00 0.00 30.89 3.58
2896 3812 9.713740 CTCTTTCTTCATTTAATGCTATGACAC 57.286 33.333 0.00 0.00 30.89 3.67
2897 3813 8.677300 TCTTTCTTCATTTAATGCTATGACACC 58.323 33.333 0.00 0.00 30.89 4.16
2898 3814 8.579850 TTTCTTCATTTAATGCTATGACACCT 57.420 30.769 0.00 0.00 30.89 4.00
2899 3815 8.579850 TTCTTCATTTAATGCTATGACACCTT 57.420 30.769 0.00 0.00 30.89 3.50
2900 3816 9.679661 TTCTTCATTTAATGCTATGACACCTTA 57.320 29.630 0.00 0.00 30.89 2.69
2901 3817 9.851686 TCTTCATTTAATGCTATGACACCTTAT 57.148 29.630 0.00 0.00 30.89 1.73
2903 3819 9.625747 TTCATTTAATGCTATGACACCTTATCA 57.374 29.630 0.00 0.00 30.89 2.15
2904 3820 9.625747 TCATTTAATGCTATGACACCTTATCAA 57.374 29.630 0.00 0.00 0.00 2.57
2910 3826 6.563422 TGCTATGACACCTTATCAAAATTGC 58.437 36.000 0.00 0.00 0.00 3.56
2911 3827 5.979517 GCTATGACACCTTATCAAAATTGCC 59.020 40.000 0.00 0.00 0.00 4.52
2912 3828 6.183360 GCTATGACACCTTATCAAAATTGCCT 60.183 38.462 0.00 0.00 0.00 4.75
2913 3829 7.013274 GCTATGACACCTTATCAAAATTGCCTA 59.987 37.037 0.00 0.00 0.00 3.93
2914 3830 6.757897 TGACACCTTATCAAAATTGCCTAG 57.242 37.500 0.00 0.00 0.00 3.02
2915 3831 6.245408 TGACACCTTATCAAAATTGCCTAGT 58.755 36.000 0.00 0.00 0.00 2.57
2916 3832 6.719370 TGACACCTTATCAAAATTGCCTAGTT 59.281 34.615 0.00 0.00 0.00 2.24
2917 3833 6.924111 ACACCTTATCAAAATTGCCTAGTTG 58.076 36.000 0.00 0.00 0.00 3.16
2918 3834 6.071391 ACACCTTATCAAAATTGCCTAGTTGG 60.071 38.462 0.00 0.00 39.35 3.77
2931 3847 3.748083 CCTAGTTGGCATGCATGATACT 58.252 45.455 30.64 26.11 0.00 2.12
2932 3848 4.898320 CCTAGTTGGCATGCATGATACTA 58.102 43.478 30.64 25.87 0.00 1.82
2933 3849 4.934001 CCTAGTTGGCATGCATGATACTAG 59.066 45.833 31.40 31.40 36.03 2.57
2934 3850 3.144506 AGTTGGCATGCATGATACTAGC 58.855 45.455 30.64 12.56 0.00 3.42
2935 3851 3.144506 GTTGGCATGCATGATACTAGCT 58.855 45.455 30.64 0.00 0.00 3.32
2936 3852 4.040829 AGTTGGCATGCATGATACTAGCTA 59.959 41.667 30.64 7.90 0.00 3.32
2937 3853 4.831674 TGGCATGCATGATACTAGCTAT 57.168 40.909 30.64 0.00 0.00 2.97
2938 3854 4.510571 TGGCATGCATGATACTAGCTATG 58.489 43.478 30.64 0.23 0.00 2.23
2939 3855 4.223477 TGGCATGCATGATACTAGCTATGA 59.777 41.667 30.64 0.00 0.00 2.15
2940 3856 5.104652 TGGCATGCATGATACTAGCTATGAT 60.105 40.000 30.64 0.00 0.00 2.45
2941 3857 6.098695 TGGCATGCATGATACTAGCTATGATA 59.901 38.462 30.64 0.00 0.00 2.15
2942 3858 6.423302 GGCATGCATGATACTAGCTATGATAC 59.577 42.308 30.64 5.71 0.00 2.24
2943 3859 7.208777 GCATGCATGATACTAGCTATGATACT 58.791 38.462 30.64 0.00 0.00 2.12
2944 3860 8.355913 GCATGCATGATACTAGCTATGATACTA 58.644 37.037 30.64 0.00 0.00 1.82
2945 3861 9.676195 CATGCATGATACTAGCTATGATACTAC 57.324 37.037 22.59 0.00 0.00 2.73
2946 3862 8.226819 TGCATGATACTAGCTATGATACTACC 57.773 38.462 0.00 0.00 0.00 3.18
2947 3863 7.834181 TGCATGATACTAGCTATGATACTACCA 59.166 37.037 0.00 0.00 0.00 3.25
2948 3864 8.855110 GCATGATACTAGCTATGATACTACCAT 58.145 37.037 0.00 0.00 0.00 3.55
2954 3870 8.266392 ACTAGCTATGATACTACCATTACGAC 57.734 38.462 0.00 0.00 0.00 4.34
2955 3871 6.512342 AGCTATGATACTACCATTACGACC 57.488 41.667 0.00 0.00 0.00 4.79
2956 3872 6.008331 AGCTATGATACTACCATTACGACCA 58.992 40.000 0.00 0.00 0.00 4.02
2957 3873 6.151312 AGCTATGATACTACCATTACGACCAG 59.849 42.308 0.00 0.00 0.00 4.00
2958 3874 4.579454 TGATACTACCATTACGACCAGC 57.421 45.455 0.00 0.00 0.00 4.85
2959 3875 3.319972 TGATACTACCATTACGACCAGCC 59.680 47.826 0.00 0.00 0.00 4.85
2960 3876 1.861982 ACTACCATTACGACCAGCCT 58.138 50.000 0.00 0.00 0.00 4.58
2961 3877 3.022557 ACTACCATTACGACCAGCCTA 57.977 47.619 0.00 0.00 0.00 3.93
2962 3878 3.368248 ACTACCATTACGACCAGCCTAA 58.632 45.455 0.00 0.00 0.00 2.69
2963 3879 2.981859 ACCATTACGACCAGCCTAAG 57.018 50.000 0.00 0.00 0.00 2.18
2964 3880 1.485066 ACCATTACGACCAGCCTAAGG 59.515 52.381 0.00 0.00 0.00 2.69
2965 3881 1.202651 CCATTACGACCAGCCTAAGGG 60.203 57.143 0.00 0.00 0.00 3.95
2987 3903 4.454504 GGCAACGAGTTCCTTCTTCAATAA 59.545 41.667 0.00 0.00 0.00 1.40
2997 3913 8.437575 AGTTCCTTCTTCAATAACTTCTACCAA 58.562 33.333 0.00 0.00 0.00 3.67
3032 3948 2.094894 GTGCTGATGTGAATGTTCCTCG 59.905 50.000 0.00 0.00 0.00 4.63
3051 3967 2.364002 TCGGGACAAGATCATATGCGAA 59.636 45.455 0.00 0.00 0.00 4.70
3054 3970 4.318332 GGGACAAGATCATATGCGAATGA 58.682 43.478 0.00 3.54 40.07 2.57
3093 4009 2.750166 CAAGAGCTTCGAGTAGAGTGGA 59.250 50.000 0.00 0.00 0.00 4.02
3096 4012 3.630312 AGAGCTTCGAGTAGAGTGGAATC 59.370 47.826 0.00 0.00 0.00 2.52
3103 4019 3.201290 GAGTAGAGTGGAATCCGTCGTA 58.799 50.000 0.00 0.00 0.00 3.43
3114 4030 4.393990 GGAATCCGTCGTACCTTCAAAAAT 59.606 41.667 0.00 0.00 0.00 1.82
3121 4037 5.220340 CGTCGTACCTTCAAAAATAATCGCT 60.220 40.000 0.00 0.00 0.00 4.93
3144 4060 2.490903 GGGATCCAAGATATGCACATGC 59.509 50.000 15.23 0.00 42.50 4.06
3146 4062 4.566278 GGGATCCAAGATATGCACATGCTA 60.566 45.833 15.23 0.00 42.66 3.49
3147 4063 5.005740 GGATCCAAGATATGCACATGCTAA 58.994 41.667 6.95 0.00 42.66 3.09
3159 4075 3.186817 GCACATGCTAATCTCTGCAGATC 59.813 47.826 18.63 3.35 42.74 2.75
3164 4080 2.612471 GCTAATCTCTGCAGATCGCCAT 60.612 50.000 18.63 3.51 38.55 4.40
3171 4087 1.314534 TGCAGATCGCCATTGTTGGG 61.315 55.000 7.00 0.00 43.84 4.12
3172 4088 1.315257 GCAGATCGCCATTGTTGGGT 61.315 55.000 0.00 0.00 43.84 4.51
3173 4089 1.176527 CAGATCGCCATTGTTGGGTT 58.823 50.000 0.00 0.00 43.84 4.11
3174 4090 2.364632 CAGATCGCCATTGTTGGGTTA 58.635 47.619 0.00 0.00 43.84 2.85
3175 4091 2.951642 CAGATCGCCATTGTTGGGTTAT 59.048 45.455 0.00 0.00 43.84 1.89
3176 4092 2.951642 AGATCGCCATTGTTGGGTTATG 59.048 45.455 0.00 0.00 43.84 1.90
3177 4093 1.468985 TCGCCATTGTTGGGTTATGG 58.531 50.000 0.00 0.00 43.84 2.74
3180 4096 0.179113 CCATTGTTGGGTTATGGCGC 60.179 55.000 0.00 0.00 39.56 6.53
3181 4097 0.179113 CATTGTTGGGTTATGGCGCC 60.179 55.000 22.73 22.73 0.00 6.53
3182 4098 0.613292 ATTGTTGGGTTATGGCGCCA 60.613 50.000 34.80 34.80 0.00 5.69
3183 4099 0.613292 TTGTTGGGTTATGGCGCCAT 60.613 50.000 41.28 41.28 40.19 4.40
3184 4100 1.034838 TGTTGGGTTATGGCGCCATC 61.035 55.000 43.60 29.82 37.82 3.51
3185 4101 1.454847 TTGGGTTATGGCGCCATCC 60.455 57.895 43.60 36.08 37.82 3.51
3186 4102 2.194597 GGGTTATGGCGCCATCCA 59.805 61.111 43.60 28.85 40.97 3.41
3188 4104 1.526575 GGGTTATGGCGCCATCCATG 61.527 60.000 43.60 0.00 45.84 3.66
3189 4105 0.823356 GGTTATGGCGCCATCCATGT 60.823 55.000 43.60 24.04 45.84 3.21
3190 4106 1.032014 GTTATGGCGCCATCCATGTT 58.968 50.000 43.60 23.24 45.84 2.71
3191 4107 1.031235 TTATGGCGCCATCCATGTTG 58.969 50.000 43.60 0.00 45.84 3.33
3192 4108 1.454572 TATGGCGCCATCCATGTTGC 61.455 55.000 43.60 4.89 45.84 4.17
3193 4109 3.142838 GGCGCCATCCATGTTGCT 61.143 61.111 24.80 0.00 0.00 3.91
3194 4110 2.713967 GGCGCCATCCATGTTGCTT 61.714 57.895 24.80 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.479884 AGACATCTTGCCCTTGATTATATCC 58.520 40.000 0.00 0.00 0.00 2.59
45 46 0.463654 AACTGGCTCAGCAACGAACA 60.464 50.000 0.00 0.00 34.37 3.18
63 64 1.363145 GGCATGTACACGCGCCTTAA 61.363 55.000 20.32 0.00 41.50 1.85
73 74 3.326578 AGCACCGGGGCATGTACA 61.327 61.111 34.08 0.00 35.83 2.90
74 75 2.824041 CAGCACCGGGGCATGTAC 60.824 66.667 34.08 0.00 35.83 2.90
128 129 1.146358 GAGAACGCACCATCTACCGC 61.146 60.000 0.00 0.00 0.00 5.68
133 134 1.513158 CTCCGAGAACGCACCATCT 59.487 57.895 0.00 0.00 38.29 2.90
169 170 4.864334 CTCAGCACCATCCCCGCC 62.864 72.222 0.00 0.00 0.00 6.13
231 232 0.388907 TAGGGCGTCGTTGCAGTTAC 60.389 55.000 0.00 0.00 36.28 2.50
307 308 4.017958 TCAGTTTGGACAATAATAGGCCCA 60.018 41.667 0.00 0.00 0.00 5.36
328 329 3.511699 CATGAGAGTTTCCGACGAATCA 58.488 45.455 0.00 0.00 0.00 2.57
337 338 1.808411 TCAACGCCATGAGAGTTTCC 58.192 50.000 0.00 0.00 0.00 3.13
341 342 1.066573 CCTCTTCAACGCCATGAGAGT 60.067 52.381 0.00 0.00 0.00 3.24
344 345 0.250234 TCCCTCTTCAACGCCATGAG 59.750 55.000 0.00 0.00 0.00 2.90
358 359 3.304794 CGGAGTATCGAAGATTGTCCCTC 60.305 52.174 0.00 0.00 45.12 4.30
359 360 2.623889 CGGAGTATCGAAGATTGTCCCT 59.376 50.000 0.00 0.00 45.12 4.20
407 408 0.034896 CTTACACCCACGTGCCTCTT 59.965 55.000 10.91 0.00 44.40 2.85
416 417 5.878669 ACGGAATAAATTCTCTTACACCCAC 59.121 40.000 2.91 0.00 37.00 4.61
430 431 5.163794 ACGCTTGATTTTCGACGGAATAAAT 60.164 36.000 0.00 0.00 30.88 1.40
448 449 3.915437 ACCCTGTTTTATTCACGCTTG 57.085 42.857 0.00 0.00 0.00 4.01
458 459 5.116180 CAATCGATCTGCTACCCTGTTTTA 58.884 41.667 0.00 0.00 0.00 1.52
495 496 6.948886 CCATACAGTAGTGGTACTCTCCATAT 59.051 42.308 1.92 0.00 37.40 1.78
498 499 4.533815 CCATACAGTAGTGGTACTCTCCA 58.466 47.826 1.92 0.00 37.40 3.86
559 560 6.404734 CCAAGATCACAGGGTTACAATTAAGC 60.405 42.308 0.00 0.00 35.32 3.09
563 564 5.255397 TCCAAGATCACAGGGTTACAATT 57.745 39.130 0.00 0.00 0.00 2.32
580 581 7.968405 CGTGGGTAAAAGAGATTTTATTCCAAG 59.032 37.037 14.40 13.31 35.95 3.61
616 617 5.394802 TGCAACGCACGATACATTTTAATT 58.605 33.333 0.00 0.00 31.71 1.40
620 621 2.979401 TGCAACGCACGATACATTTT 57.021 40.000 0.00 0.00 31.71 1.82
637 638 4.331962 GCTATTAGTAAGTTTGCACGTGC 58.668 43.478 33.11 33.11 42.50 5.34
638 639 4.630069 AGGCTATTAGTAAGTTTGCACGTG 59.370 41.667 12.28 12.28 0.00 4.49
639 640 4.828829 AGGCTATTAGTAAGTTTGCACGT 58.171 39.130 0.00 0.00 0.00 4.49
640 641 6.897259 TTAGGCTATTAGTAAGTTTGCACG 57.103 37.500 0.00 0.00 0.00 5.34
641 642 9.503427 CATTTTAGGCTATTAGTAAGTTTGCAC 57.497 33.333 0.00 0.00 0.00 4.57
642 643 9.456147 TCATTTTAGGCTATTAGTAAGTTTGCA 57.544 29.630 0.00 0.00 0.00 4.08
643 644 9.937175 CTCATTTTAGGCTATTAGTAAGTTTGC 57.063 33.333 0.00 0.00 0.00 3.68
659 660 3.382546 CCATCCAGTTGCCTCATTTTAGG 59.617 47.826 0.00 0.00 39.87 2.69
660 661 3.181483 GCCATCCAGTTGCCTCATTTTAG 60.181 47.826 0.00 0.00 0.00 1.85
661 662 2.760092 GCCATCCAGTTGCCTCATTTTA 59.240 45.455 0.00 0.00 0.00 1.52
662 663 1.551883 GCCATCCAGTTGCCTCATTTT 59.448 47.619 0.00 0.00 0.00 1.82
663 664 1.188863 GCCATCCAGTTGCCTCATTT 58.811 50.000 0.00 0.00 0.00 2.32
664 665 1.033746 CGCCATCCAGTTGCCTCATT 61.034 55.000 0.00 0.00 0.00 2.57
665 666 1.452651 CGCCATCCAGTTGCCTCAT 60.453 57.895 0.00 0.00 0.00 2.90
666 667 2.046023 CGCCATCCAGTTGCCTCA 60.046 61.111 0.00 0.00 0.00 3.86
667 668 2.825836 CCGCCATCCAGTTGCCTC 60.826 66.667 0.00 0.00 0.00 4.70
685 686 2.584418 CGAGATCTGTGCCTGCGG 60.584 66.667 0.00 0.00 0.00 5.69
686 687 3.260483 GCGAGATCTGTGCCTGCG 61.260 66.667 0.00 0.00 0.00 5.18
687 688 2.894387 GGCGAGATCTGTGCCTGC 60.894 66.667 22.60 7.86 45.40 4.85
691 692 2.887568 CGGTGGCGAGATCTGTGC 60.888 66.667 0.00 3.65 0.00 4.57
692 693 2.021068 ATCCGGTGGCGAGATCTGTG 62.021 60.000 0.00 0.00 0.00 3.66
693 694 1.739338 GATCCGGTGGCGAGATCTGT 61.739 60.000 0.00 0.00 34.78 3.41
694 695 1.006805 GATCCGGTGGCGAGATCTG 60.007 63.158 0.00 0.00 34.78 2.90
695 696 1.043116 TTGATCCGGTGGCGAGATCT 61.043 55.000 0.00 0.00 37.80 2.75
696 697 0.598680 CTTGATCCGGTGGCGAGATC 60.599 60.000 0.00 0.00 37.51 2.75
697 698 1.330655 ACTTGATCCGGTGGCGAGAT 61.331 55.000 0.00 0.00 0.00 2.75
698 699 1.982395 ACTTGATCCGGTGGCGAGA 60.982 57.895 0.00 0.00 0.00 4.04
699 700 1.811266 CACTTGATCCGGTGGCGAG 60.811 63.158 0.00 4.03 0.00 5.03
700 701 2.264480 CACTTGATCCGGTGGCGA 59.736 61.111 0.00 0.00 0.00 5.54
701 702 3.499737 GCACTTGATCCGGTGGCG 61.500 66.667 0.00 0.00 34.41 5.69
702 703 3.499737 CGCACTTGATCCGGTGGC 61.500 66.667 0.00 7.80 34.41 5.01
703 704 2.047274 ACGCACTTGATCCGGTGG 60.047 61.111 0.00 8.66 34.41 4.61
704 705 3.027170 GCACGCACTTGATCCGGTG 62.027 63.158 0.00 9.82 36.62 4.94
705 706 2.742372 GCACGCACTTGATCCGGT 60.742 61.111 0.00 0.00 0.00 5.28
706 707 3.499737 GGCACGCACTTGATCCGG 61.500 66.667 0.00 0.00 0.00 5.14
707 708 2.741985 TGGCACGCACTTGATCCG 60.742 61.111 0.00 0.00 0.00 4.18
708 709 2.690778 GGTGGCACGCACTTGATCC 61.691 63.158 12.17 0.00 43.02 3.36
709 710 2.870372 GGTGGCACGCACTTGATC 59.130 61.111 12.17 0.00 43.02 2.92
710 711 3.049674 CGGTGGCACGCACTTGAT 61.050 61.111 12.17 0.00 43.02 2.57
711 712 4.539083 ACGGTGGCACGCACTTGA 62.539 61.111 12.17 0.00 43.02 3.02
712 713 4.312231 CACGGTGGCACGCACTTG 62.312 66.667 12.17 0.00 43.02 3.16
715 716 4.973055 TACCACGGTGGCACGCAC 62.973 66.667 26.62 0.00 42.67 5.34
716 717 4.973055 GTACCACGGTGGCACGCA 62.973 66.667 26.62 4.61 42.67 5.24
717 718 4.973055 TGTACCACGGTGGCACGC 62.973 66.667 26.62 14.15 42.67 5.34
718 719 3.039588 GTGTACCACGGTGGCACG 61.040 66.667 26.62 9.61 42.67 5.34
727 728 5.690409 ACAATGATAATCGATCGTGTACCAC 59.310 40.000 15.94 3.19 37.38 4.16
728 729 5.838529 ACAATGATAATCGATCGTGTACCA 58.161 37.500 15.94 6.18 37.38 3.25
729 730 6.128902 GGAACAATGATAATCGATCGTGTACC 60.129 42.308 15.94 0.06 35.44 3.34
730 731 6.419710 TGGAACAATGATAATCGATCGTGTAC 59.580 38.462 15.94 6.89 35.44 2.90
731 732 6.508777 TGGAACAATGATAATCGATCGTGTA 58.491 36.000 15.94 8.87 35.44 2.90
732 733 5.356426 TGGAACAATGATAATCGATCGTGT 58.644 37.500 15.94 6.46 37.13 4.49
733 734 5.905480 TGGAACAATGATAATCGATCGTG 57.095 39.130 15.94 5.77 33.65 4.35
742 743 7.860373 GCTTAACGCATAATGGAACAATGATAA 59.140 33.333 0.00 0.00 39.93 1.75
743 744 7.228507 AGCTTAACGCATAATGGAACAATGATA 59.771 33.333 0.00 0.00 42.24 2.15
744 745 6.039717 AGCTTAACGCATAATGGAACAATGAT 59.960 34.615 0.00 0.00 42.24 2.45
745 746 5.356751 AGCTTAACGCATAATGGAACAATGA 59.643 36.000 0.00 0.00 42.24 2.57
746 747 5.581605 AGCTTAACGCATAATGGAACAATG 58.418 37.500 0.00 0.00 42.24 2.82
747 748 5.835113 AGCTTAACGCATAATGGAACAAT 57.165 34.783 0.00 0.00 42.24 2.71
748 749 5.637006 AAGCTTAACGCATAATGGAACAA 57.363 34.783 0.00 0.00 42.24 2.83
749 750 5.878116 ACTAAGCTTAACGCATAATGGAACA 59.122 36.000 7.74 0.00 43.03 3.18
750 751 6.258068 AGACTAAGCTTAACGCATAATGGAAC 59.742 38.462 7.74 0.00 42.61 3.62
751 752 6.346096 AGACTAAGCTTAACGCATAATGGAA 58.654 36.000 7.74 0.00 42.61 3.53
752 753 5.914033 AGACTAAGCTTAACGCATAATGGA 58.086 37.500 7.74 0.00 42.61 3.41
753 754 6.924060 ACTAGACTAAGCTTAACGCATAATGG 59.076 38.462 7.74 0.00 42.61 3.16
754 755 7.648112 TGACTAGACTAAGCTTAACGCATAATG 59.352 37.037 7.74 0.00 42.61 1.90
755 756 7.648510 GTGACTAGACTAAGCTTAACGCATAAT 59.351 37.037 7.74 0.00 42.61 1.28
756 757 6.971184 GTGACTAGACTAAGCTTAACGCATAA 59.029 38.462 7.74 0.00 42.61 1.90
757 758 6.318144 AGTGACTAGACTAAGCTTAACGCATA 59.682 38.462 7.74 0.00 42.61 3.14
758 759 5.125739 AGTGACTAGACTAAGCTTAACGCAT 59.874 40.000 7.74 0.00 42.61 4.73
759 760 4.458295 AGTGACTAGACTAAGCTTAACGCA 59.542 41.667 7.74 0.00 42.61 5.24
760 761 4.794246 CAGTGACTAGACTAAGCTTAACGC 59.206 45.833 7.74 0.01 39.57 4.84
761 762 6.022821 GTCAGTGACTAGACTAAGCTTAACG 58.977 44.000 16.26 0.00 0.00 3.18
762 763 6.151480 AGGTCAGTGACTAGACTAAGCTTAAC 59.849 42.308 22.18 5.06 35.18 2.01
763 764 6.246919 AGGTCAGTGACTAGACTAAGCTTAA 58.753 40.000 22.18 0.00 35.18 1.85
764 765 5.817784 AGGTCAGTGACTAGACTAAGCTTA 58.182 41.667 22.18 5.94 35.18 3.09
765 766 4.668636 AGGTCAGTGACTAGACTAAGCTT 58.331 43.478 22.18 3.48 35.18 3.74
766 767 4.310022 AGGTCAGTGACTAGACTAAGCT 57.690 45.455 22.18 5.26 35.18 3.74
767 768 4.703093 AGAAGGTCAGTGACTAGACTAAGC 59.297 45.833 22.18 2.96 35.18 3.09
768 769 5.941058 TCAGAAGGTCAGTGACTAGACTAAG 59.059 44.000 22.18 6.25 35.18 2.18
769 770 5.706369 GTCAGAAGGTCAGTGACTAGACTAA 59.294 44.000 22.18 1.84 38.06 2.24
770 771 5.221864 TGTCAGAAGGTCAGTGACTAGACTA 60.222 44.000 22.18 10.72 41.06 2.59
771 772 4.076394 GTCAGAAGGTCAGTGACTAGACT 58.924 47.826 22.18 13.33 38.06 3.24
772 773 3.821600 TGTCAGAAGGTCAGTGACTAGAC 59.178 47.826 22.18 19.76 41.06 2.59
773 774 4.075682 CTGTCAGAAGGTCAGTGACTAGA 58.924 47.826 22.18 10.51 41.06 2.43
774 775 4.075682 TCTGTCAGAAGGTCAGTGACTAG 58.924 47.826 22.18 8.53 41.06 2.57
775 776 4.100279 TCTGTCAGAAGGTCAGTGACTA 57.900 45.455 22.18 0.00 41.06 2.59
776 777 2.950781 TCTGTCAGAAGGTCAGTGACT 58.049 47.619 22.18 3.84 41.06 3.41
777 778 3.951775 ATCTGTCAGAAGGTCAGTGAC 57.048 47.619 15.24 15.24 40.89 3.67
778 779 4.667573 AGTATCTGTCAGAAGGTCAGTGA 58.332 43.478 6.64 0.00 0.00 3.41
779 780 5.047731 TGAAGTATCTGTCAGAAGGTCAGTG 60.048 44.000 6.64 0.00 0.00 3.66
785 786 6.151985 ACAGTAGTGAAGTATCTGTCAGAAGG 59.848 42.308 6.64 0.00 34.87 3.46
795 796 4.516359 CGCGAGTACAGTAGTGAAGTATC 58.484 47.826 0.00 0.00 0.00 2.24
831 832 1.376609 GGGCCCGTGCTATTTGTCTG 61.377 60.000 5.69 0.00 37.74 3.51
871 872 2.381589 CCGCTCTTGGTTTCGTTTTTC 58.618 47.619 0.00 0.00 0.00 2.29
874 875 1.098712 TGCCGCTCTTGGTTTCGTTT 61.099 50.000 0.00 0.00 0.00 3.60
891 892 1.594862 GGATAGCTGTTCGTCATGTGC 59.405 52.381 0.00 0.00 0.00 4.57
899 900 2.141535 GCTGGTAGGATAGCTGTTCG 57.858 55.000 0.00 0.00 40.38 3.95
909 910 3.538614 GCGGATGAGCTGGTAGGA 58.461 61.111 0.00 0.00 0.00 2.94
932 933 6.208994 GGCAGGTACTTATAGAGCTAGCTAAA 59.791 42.308 19.38 9.24 34.60 1.85
943 944 2.429610 ACACCGTGGCAGGTACTTATAG 59.570 50.000 6.43 0.00 43.89 1.31
957 958 0.447801 GCTTCTTGGCATACACCGTG 59.552 55.000 0.00 0.00 0.00 4.94
999 1000 1.654954 GCTGCTGCTCTGAACCCATG 61.655 60.000 8.53 0.00 36.03 3.66
1254 1279 1.618837 CCGGGGATGTTCGAGATGTAT 59.381 52.381 0.00 0.00 0.00 2.29
1263 1288 0.394352 AGTTCATGCCGGGGATGTTC 60.394 55.000 25.20 18.80 0.00 3.18
1358 1383 0.323629 TTACCAGAAGGCAGGGTTCG 59.676 55.000 0.00 0.00 39.06 3.95
1408 1433 0.826715 GATGGTAGCCTCAGCAGTGA 59.173 55.000 0.00 0.00 43.56 3.41
1410 1435 1.504912 ATGATGGTAGCCTCAGCAGT 58.495 50.000 6.10 0.00 43.56 4.40
1412 1437 1.748244 GCAATGATGGTAGCCTCAGCA 60.748 52.381 6.10 0.00 43.56 4.41
1413 1438 0.950116 GCAATGATGGTAGCCTCAGC 59.050 55.000 6.10 1.64 40.32 4.26
1491 1516 3.408755 CACAACTGTGTCGCTGCA 58.591 55.556 0.00 0.00 40.96 4.41
1503 1528 1.444119 TTCTTGGCTGCCGACACAAC 61.444 55.000 14.98 0.00 0.00 3.32
1588 1613 4.543736 CGAAGTGCGCGTCGATGC 62.544 66.667 27.80 19.84 46.68 3.91
1808 1833 2.685100 CCTCTTACCGTCAACAACTCC 58.315 52.381 0.00 0.00 0.00 3.85
1866 1891 4.742201 AACTGGAGATGCGCGCGT 62.742 61.111 32.35 28.54 0.00 6.01
1901 1926 2.019951 GCGACATATACGGCGGTGG 61.020 63.158 13.24 0.95 0.00 4.61
2101 2126 1.290955 CGAGTGCCGGAACTTGGTA 59.709 57.895 21.27 0.00 33.91 3.25
2164 2189 1.839994 GGTGATCCATCCTTCTCCACA 59.160 52.381 0.00 0.00 0.00 4.17
2199 2227 3.501950 GAAGTGAAATTGATTCGTGGGC 58.498 45.455 0.00 0.00 41.18 5.36
2201 2229 3.163594 GCGAAGTGAAATTGATTCGTGG 58.836 45.455 12.94 0.00 44.71 4.94
2205 2233 4.406943 GTGAGGCGAAGTGAAATTGATTC 58.593 43.478 0.00 0.00 38.60 2.52
2207 2235 2.749621 GGTGAGGCGAAGTGAAATTGAT 59.250 45.455 0.00 0.00 0.00 2.57
2264 2294 5.187576 TCAAAGATAAATGCCCTTTCCTTGG 59.812 40.000 0.00 0.00 0.00 3.61
2350 2836 6.449635 AAGTGCTTTGTGTCACTGATTAAA 57.550 33.333 4.27 0.00 42.19 1.52
2458 3373 9.255029 ACCATTACCTAATAAAGCTTTGATGTT 57.745 29.630 22.02 12.67 0.00 2.71
2462 3377 8.885722 CGTTACCATTACCTAATAAAGCTTTGA 58.114 33.333 22.02 6.40 0.00 2.69
2472 3387 8.026396 ACCTATGAACGTTACCATTACCTAAT 57.974 34.615 0.00 0.00 0.00 1.73
2482 3397 7.201582 CCAATTCTTGTACCTATGAACGTTACC 60.202 40.741 0.00 0.00 0.00 2.85
2487 3402 6.017934 CCATCCAATTCTTGTACCTATGAACG 60.018 42.308 0.00 0.00 0.00 3.95
2525 3440 3.181484 CCATATCAAGCCAACATGTGTGG 60.181 47.826 17.67 17.67 0.00 4.17
2534 3449 2.886523 GCATGCTACCATATCAAGCCAA 59.113 45.455 11.37 0.00 35.33 4.52
2535 3450 2.507484 GCATGCTACCATATCAAGCCA 58.493 47.619 11.37 0.00 35.33 4.75
2536 3451 1.815003 GGCATGCTACCATATCAAGCC 59.185 52.381 18.92 0.00 35.33 4.35
2575 3490 4.533919 AGCTCATAATCTCGCTAAGCAT 57.466 40.909 0.00 0.00 0.00 3.79
2601 3516 2.734606 CACGAGCACGGAAACTTCAATA 59.265 45.455 8.74 0.00 44.46 1.90
2603 3518 0.934496 CACGAGCACGGAAACTTCAA 59.066 50.000 8.74 0.00 44.46 2.69
2622 3537 0.313672 TCCGTCCTGCAATTTTGTGC 59.686 50.000 0.00 0.00 45.15 4.57
2623 3538 2.791383 TTCCGTCCTGCAATTTTGTG 57.209 45.000 0.00 0.00 0.00 3.33
2631 3547 1.202879 AGATTGGTTTTCCGTCCTGCA 60.203 47.619 0.00 0.00 44.36 4.41
2639 3555 3.649073 CAAACCGGAAGATTGGTTTTCC 58.351 45.455 9.46 0.00 41.52 3.13
2640 3556 3.057019 GCAAACCGGAAGATTGGTTTTC 58.943 45.455 9.46 0.00 41.52 2.29
2644 3560 1.923356 ATGCAAACCGGAAGATTGGT 58.077 45.000 9.46 0.00 41.20 3.67
2655 3571 3.507233 TGTCATCAGGAAGAATGCAAACC 59.493 43.478 0.00 0.00 0.00 3.27
2658 3574 2.751259 GCTGTCATCAGGAAGAATGCAA 59.249 45.455 0.00 0.00 41.57 4.08
2659 3575 2.290450 TGCTGTCATCAGGAAGAATGCA 60.290 45.455 0.00 0.00 38.99 3.96
2663 3579 6.407412 CCTTATAGTGCTGTCATCAGGAAGAA 60.407 42.308 0.00 0.00 43.20 2.52
2667 3583 3.070159 GCCTTATAGTGCTGTCATCAGGA 59.930 47.826 0.00 0.00 41.57 3.86
2678 3594 5.182001 CCCATTACAATCAGCCTTATAGTGC 59.818 44.000 0.00 0.00 0.00 4.40
2685 3601 2.582636 ACTCCCCATTACAATCAGCCTT 59.417 45.455 0.00 0.00 0.00 4.35
2689 3605 9.823647 GTATATGATACTCCCCATTACAATCAG 57.176 37.037 0.00 0.00 0.00 2.90
2690 3606 9.560860 AGTATATGATACTCCCCATTACAATCA 57.439 33.333 0.00 0.00 0.00 2.57
2699 3615 9.868160 CATGATACTAGTATATGATACTCCCCA 57.132 37.037 15.42 5.35 0.00 4.96
2700 3616 8.798402 GCATGATACTAGTATATGATACTCCCC 58.202 40.741 22.89 8.64 0.00 4.81
2701 3617 9.355916 TGCATGATACTAGTATATGATACTCCC 57.644 37.037 22.89 9.00 0.00 4.30
2737 3653 8.924303 TGCATTAAAGAGGTAGTATCATACACT 58.076 33.333 0.00 0.00 0.00 3.55
2738 3654 9.712305 ATGCATTAAAGAGGTAGTATCATACAC 57.288 33.333 0.00 0.00 0.00 2.90
2782 3698 9.710900 CATGGCAATAAATAGAGTACTACATGA 57.289 33.333 0.00 0.00 33.32 3.07
2783 3699 8.446273 GCATGGCAATAAATAGAGTACTACATG 58.554 37.037 0.00 0.00 34.30 3.21
2784 3700 8.156820 TGCATGGCAATAAATAGAGTACTACAT 58.843 33.333 0.00 0.00 34.76 2.29
2785 3701 7.505258 TGCATGGCAATAAATAGAGTACTACA 58.495 34.615 0.00 0.00 34.76 2.74
2786 3702 7.962964 TGCATGGCAATAAATAGAGTACTAC 57.037 36.000 0.00 0.00 34.76 2.73
2787 3703 8.374743 TCATGCATGGCAATAAATAGAGTACTA 58.625 33.333 25.97 0.00 43.62 1.82
2788 3704 7.173907 GTCATGCATGGCAATAAATAGAGTACT 59.826 37.037 26.04 0.00 43.62 2.73
2789 3705 7.041167 TGTCATGCATGGCAATAAATAGAGTAC 60.041 37.037 30.82 13.36 43.62 2.73
2790 3706 6.997476 TGTCATGCATGGCAATAAATAGAGTA 59.003 34.615 30.82 3.13 43.62 2.59
2791 3707 5.829391 TGTCATGCATGGCAATAAATAGAGT 59.171 36.000 30.82 0.00 43.62 3.24
2792 3708 6.147581 GTGTCATGCATGGCAATAAATAGAG 58.852 40.000 34.01 0.00 44.94 2.43
2793 3709 5.593502 TGTGTCATGCATGGCAATAAATAGA 59.406 36.000 34.01 6.92 44.94 1.98
2794 3710 5.834169 TGTGTCATGCATGGCAATAAATAG 58.166 37.500 34.01 0.35 44.94 1.73
2795 3711 5.848833 TGTGTCATGCATGGCAATAAATA 57.151 34.783 34.01 14.13 44.94 1.40
2796 3712 4.739587 TGTGTCATGCATGGCAATAAAT 57.260 36.364 34.01 0.00 44.94 1.40
2797 3713 4.532314 TTGTGTCATGCATGGCAATAAA 57.468 36.364 34.01 24.20 44.94 1.40
2798 3714 4.021280 ACTTTGTGTCATGCATGGCAATAA 60.021 37.500 34.01 26.82 44.94 1.40
2799 3715 3.510753 ACTTTGTGTCATGCATGGCAATA 59.489 39.130 34.01 22.99 44.94 1.90
2800 3716 2.300723 ACTTTGTGTCATGCATGGCAAT 59.699 40.909 34.01 15.19 44.94 3.56
2801 3717 1.687660 ACTTTGTGTCATGCATGGCAA 59.312 42.857 34.01 25.74 44.94 4.52
2802 3718 1.330234 ACTTTGTGTCATGCATGGCA 58.670 45.000 29.45 29.45 44.86 4.92
2803 3719 2.733227 GCTACTTTGTGTCATGCATGGC 60.733 50.000 24.40 24.40 0.00 4.40
2804 3720 2.488937 TGCTACTTTGTGTCATGCATGG 59.511 45.455 25.97 10.76 0.00 3.66
2805 3721 3.835378 TGCTACTTTGTGTCATGCATG 57.165 42.857 21.07 21.07 0.00 4.06
2806 3722 4.036027 GCTATGCTACTTTGTGTCATGCAT 59.964 41.667 0.00 0.00 40.50 3.96
2807 3723 3.374988 GCTATGCTACTTTGTGTCATGCA 59.625 43.478 0.00 0.00 35.34 3.96
2808 3724 3.374988 TGCTATGCTACTTTGTGTCATGC 59.625 43.478 0.00 0.00 0.00 4.06
2809 3725 5.746307 ATGCTATGCTACTTTGTGTCATG 57.254 39.130 0.00 0.00 0.00 3.07
2810 3726 6.764308 AAATGCTATGCTACTTTGTGTCAT 57.236 33.333 0.00 0.00 0.00 3.06
2811 3727 7.864108 ATAAATGCTATGCTACTTTGTGTCA 57.136 32.000 0.00 0.00 0.00 3.58
2819 3735 9.534565 CCGTATCATAATAAATGCTATGCTACT 57.465 33.333 0.00 0.00 30.34 2.57
2820 3736 9.314321 ACCGTATCATAATAAATGCTATGCTAC 57.686 33.333 0.00 0.00 0.00 3.58
2848 3764 5.908590 AGAGGGTGGAGTATCATATCATGA 58.091 41.667 0.00 0.00 44.55 3.07
2849 3765 5.957168 AGAGAGGGTGGAGTATCATATCATG 59.043 44.000 0.00 0.00 36.25 3.07
2850 3766 6.164425 AGAGAGGGTGGAGTATCATATCAT 57.836 41.667 0.00 0.00 36.25 2.45
2851 3767 5.607168 AGAGAGGGTGGAGTATCATATCA 57.393 43.478 0.00 0.00 36.25 2.15
2852 3768 6.723977 AGAAAGAGAGGGTGGAGTATCATATC 59.276 42.308 0.00 0.00 36.25 1.63
2853 3769 6.629156 AGAAAGAGAGGGTGGAGTATCATAT 58.371 40.000 0.00 0.00 36.25 1.78
2854 3770 6.031964 AGAAAGAGAGGGTGGAGTATCATA 57.968 41.667 0.00 0.00 36.25 2.15
2855 3771 4.889780 AGAAAGAGAGGGTGGAGTATCAT 58.110 43.478 0.00 0.00 36.25 2.45
2856 3772 4.338795 AGAAAGAGAGGGTGGAGTATCA 57.661 45.455 0.00 0.00 36.25 2.15
2857 3773 4.712337 TGAAGAAAGAGAGGGTGGAGTATC 59.288 45.833 0.00 0.00 0.00 2.24
2858 3774 4.689062 TGAAGAAAGAGAGGGTGGAGTAT 58.311 43.478 0.00 0.00 0.00 2.12
2859 3775 4.127918 TGAAGAAAGAGAGGGTGGAGTA 57.872 45.455 0.00 0.00 0.00 2.59
2860 3776 2.977808 TGAAGAAAGAGAGGGTGGAGT 58.022 47.619 0.00 0.00 0.00 3.85
2861 3777 4.566426 AATGAAGAAAGAGAGGGTGGAG 57.434 45.455 0.00 0.00 0.00 3.86
2862 3778 6.448369 TTAAATGAAGAAAGAGAGGGTGGA 57.552 37.500 0.00 0.00 0.00 4.02
2863 3779 6.405176 GCATTAAATGAAGAAAGAGAGGGTGG 60.405 42.308 0.00 0.00 0.00 4.61
2864 3780 6.376581 AGCATTAAATGAAGAAAGAGAGGGTG 59.623 38.462 0.00 0.00 0.00 4.61
2865 3781 6.488715 AGCATTAAATGAAGAAAGAGAGGGT 58.511 36.000 0.00 0.00 0.00 4.34
2866 3782 8.566260 CATAGCATTAAATGAAGAAAGAGAGGG 58.434 37.037 0.00 0.00 0.00 4.30
2867 3783 9.334947 TCATAGCATTAAATGAAGAAAGAGAGG 57.665 33.333 0.00 0.00 0.00 3.69
2869 3785 9.671279 TGTCATAGCATTAAATGAAGAAAGAGA 57.329 29.630 0.00 0.00 34.06 3.10
2870 3786 9.713740 GTGTCATAGCATTAAATGAAGAAAGAG 57.286 33.333 0.00 0.00 34.06 2.85
2871 3787 8.677300 GGTGTCATAGCATTAAATGAAGAAAGA 58.323 33.333 0.00 0.00 34.06 2.52
2872 3788 8.680903 AGGTGTCATAGCATTAAATGAAGAAAG 58.319 33.333 0.00 0.00 34.06 2.62
2873 3789 8.579850 AGGTGTCATAGCATTAAATGAAGAAA 57.420 30.769 0.00 0.00 34.06 2.52
2874 3790 8.579850 AAGGTGTCATAGCATTAAATGAAGAA 57.420 30.769 0.00 0.00 34.06 2.52
2875 3791 9.851686 ATAAGGTGTCATAGCATTAAATGAAGA 57.148 29.630 0.00 0.00 34.06 2.87
2877 3793 9.625747 TGATAAGGTGTCATAGCATTAAATGAA 57.374 29.630 0.00 0.00 34.06 2.57
2878 3794 9.625747 TTGATAAGGTGTCATAGCATTAAATGA 57.374 29.630 0.00 0.00 0.00 2.57
2884 3800 7.707893 GCAATTTTGATAAGGTGTCATAGCATT 59.292 33.333 0.00 0.00 0.00 3.56
2885 3801 7.205297 GCAATTTTGATAAGGTGTCATAGCAT 58.795 34.615 0.00 0.00 0.00 3.79
2886 3802 6.405731 GGCAATTTTGATAAGGTGTCATAGCA 60.406 38.462 0.00 0.00 0.00 3.49
2887 3803 5.979517 GGCAATTTTGATAAGGTGTCATAGC 59.020 40.000 0.00 0.00 0.00 2.97
2888 3804 7.338800 AGGCAATTTTGATAAGGTGTCATAG 57.661 36.000 0.00 0.00 0.00 2.23
2889 3805 8.052748 ACTAGGCAATTTTGATAAGGTGTCATA 58.947 33.333 0.00 0.00 0.00 2.15
2890 3806 6.891908 ACTAGGCAATTTTGATAAGGTGTCAT 59.108 34.615 0.00 0.00 0.00 3.06
2891 3807 6.245408 ACTAGGCAATTTTGATAAGGTGTCA 58.755 36.000 0.00 0.00 0.00 3.58
2892 3808 6.759497 ACTAGGCAATTTTGATAAGGTGTC 57.241 37.500 0.00 0.00 0.00 3.67
2893 3809 6.071391 CCAACTAGGCAATTTTGATAAGGTGT 60.071 38.462 0.00 0.00 0.00 4.16
2894 3810 6.332630 CCAACTAGGCAATTTTGATAAGGTG 58.667 40.000 0.00 0.00 0.00 4.00
2895 3811 6.530019 CCAACTAGGCAATTTTGATAAGGT 57.470 37.500 0.00 0.00 0.00 3.50
2910 3826 3.748083 AGTATCATGCATGCCAACTAGG 58.252 45.455 22.25 0.00 41.84 3.02
2911 3827 4.391216 GCTAGTATCATGCATGCCAACTAG 59.609 45.833 32.38 32.38 37.27 2.57
2912 3828 4.040829 AGCTAGTATCATGCATGCCAACTA 59.959 41.667 22.25 22.70 0.00 2.24
2913 3829 3.144506 GCTAGTATCATGCATGCCAACT 58.855 45.455 22.25 22.78 0.00 3.16
2914 3830 3.144506 AGCTAGTATCATGCATGCCAAC 58.855 45.455 22.25 17.59 0.00 3.77
2915 3831 3.497103 AGCTAGTATCATGCATGCCAA 57.503 42.857 22.25 5.34 0.00 4.52
2916 3832 4.223477 TCATAGCTAGTATCATGCATGCCA 59.777 41.667 22.25 8.84 0.00 4.92
2917 3833 4.763073 TCATAGCTAGTATCATGCATGCC 58.237 43.478 22.25 11.72 0.00 4.40
2918 3834 7.208777 AGTATCATAGCTAGTATCATGCATGC 58.791 38.462 22.25 11.82 0.00 4.06
2919 3835 9.676195 GTAGTATCATAGCTAGTATCATGCATG 57.324 37.037 21.07 21.07 0.00 4.06
2920 3836 8.855110 GGTAGTATCATAGCTAGTATCATGCAT 58.145 37.037 0.00 0.00 0.00 3.96
2921 3837 7.834181 TGGTAGTATCATAGCTAGTATCATGCA 59.166 37.037 0.00 0.00 0.00 3.96
2922 3838 8.226819 TGGTAGTATCATAGCTAGTATCATGC 57.773 38.462 0.00 0.00 0.00 4.06
2928 3844 9.376075 GTCGTAATGGTAGTATCATAGCTAGTA 57.624 37.037 0.00 0.00 0.00 1.82
2929 3845 7.336427 GGTCGTAATGGTAGTATCATAGCTAGT 59.664 40.741 0.00 0.00 0.00 2.57
2930 3846 7.336176 TGGTCGTAATGGTAGTATCATAGCTAG 59.664 40.741 0.00 0.00 0.00 3.42
2931 3847 7.170277 TGGTCGTAATGGTAGTATCATAGCTA 58.830 38.462 0.00 0.00 0.00 3.32
2932 3848 6.008331 TGGTCGTAATGGTAGTATCATAGCT 58.992 40.000 0.00 0.00 0.00 3.32
2933 3849 6.263516 TGGTCGTAATGGTAGTATCATAGC 57.736 41.667 0.00 0.00 0.00 2.97
2934 3850 6.323266 GCTGGTCGTAATGGTAGTATCATAG 58.677 44.000 0.00 0.00 0.00 2.23
2935 3851 5.184479 GGCTGGTCGTAATGGTAGTATCATA 59.816 44.000 0.00 0.00 0.00 2.15
2936 3852 4.021368 GGCTGGTCGTAATGGTAGTATCAT 60.021 45.833 0.00 0.00 0.00 2.45
2937 3853 3.319972 GGCTGGTCGTAATGGTAGTATCA 59.680 47.826 0.00 0.00 0.00 2.15
2938 3854 3.573110 AGGCTGGTCGTAATGGTAGTATC 59.427 47.826 0.00 0.00 0.00 2.24
2939 3855 3.573695 AGGCTGGTCGTAATGGTAGTAT 58.426 45.455 0.00 0.00 0.00 2.12
2940 3856 3.022557 AGGCTGGTCGTAATGGTAGTA 57.977 47.619 0.00 0.00 0.00 1.82
2941 3857 1.861982 AGGCTGGTCGTAATGGTAGT 58.138 50.000 0.00 0.00 0.00 2.73
2942 3858 3.243771 CCTTAGGCTGGTCGTAATGGTAG 60.244 52.174 0.00 0.00 0.00 3.18
2943 3859 2.696707 CCTTAGGCTGGTCGTAATGGTA 59.303 50.000 0.00 0.00 0.00 3.25
2944 3860 1.485066 CCTTAGGCTGGTCGTAATGGT 59.515 52.381 0.00 0.00 0.00 3.55
2945 3861 1.202651 CCCTTAGGCTGGTCGTAATGG 60.203 57.143 0.00 0.00 0.00 3.16
2946 3862 2.240493 CCCTTAGGCTGGTCGTAATG 57.760 55.000 0.00 0.00 0.00 1.90
2958 3874 0.613777 AGGAACTCGTTGCCCTTAGG 59.386 55.000 0.00 0.00 0.00 2.69
2959 3875 2.028020 AGAAGGAACTCGTTGCCCTTAG 60.028 50.000 0.00 0.00 38.49 2.18
2960 3876 1.975680 AGAAGGAACTCGTTGCCCTTA 59.024 47.619 0.00 0.00 38.49 2.69
2961 3877 0.765510 AGAAGGAACTCGTTGCCCTT 59.234 50.000 0.00 0.00 38.49 3.95
2962 3878 0.765510 AAGAAGGAACTCGTTGCCCT 59.234 50.000 0.00 0.00 38.49 5.19
2963 3879 1.157585 GAAGAAGGAACTCGTTGCCC 58.842 55.000 0.00 0.00 38.49 5.36
2964 3880 1.878953 TGAAGAAGGAACTCGTTGCC 58.121 50.000 0.00 0.00 38.49 4.52
2965 3881 5.179555 AGTTATTGAAGAAGGAACTCGTTGC 59.820 40.000 0.00 0.00 38.49 4.17
2966 3882 6.787085 AGTTATTGAAGAAGGAACTCGTTG 57.213 37.500 0.00 0.00 38.49 4.10
2967 3883 7.217906 AGAAGTTATTGAAGAAGGAACTCGTT 58.782 34.615 0.00 0.00 38.49 3.85
2968 3884 6.760291 AGAAGTTATTGAAGAAGGAACTCGT 58.240 36.000 0.00 0.00 38.49 4.18
2969 3885 7.275999 GGTAGAAGTTATTGAAGAAGGAACTCG 59.724 40.741 0.00 0.00 38.49 4.18
2970 3886 8.095169 TGGTAGAAGTTATTGAAGAAGGAACTC 58.905 37.037 0.00 0.00 38.49 3.01
2987 3903 2.656947 TGCAAAGGCTTGGTAGAAGT 57.343 45.000 0.00 0.00 41.91 3.01
3015 3931 1.905894 TCCCGAGGAACATTCACATCA 59.094 47.619 0.00 0.00 0.00 3.07
3032 3948 4.153117 GTCATTCGCATATGATCTTGTCCC 59.847 45.833 6.97 0.00 36.94 4.46
3051 3967 4.078639 GCTTGTAGGGAAGCTATGTCAT 57.921 45.455 0.00 0.00 44.26 3.06
3093 4009 7.464977 CGATTATTTTTGAAGGTACGACGGATT 60.465 37.037 0.00 0.00 0.00 3.01
3096 4012 5.486706 CGATTATTTTTGAAGGTACGACGG 58.513 41.667 0.00 0.00 0.00 4.79
3103 4019 3.447229 CCCCAGCGATTATTTTTGAAGGT 59.553 43.478 0.00 0.00 0.00 3.50
3114 4030 1.801242 TCTTGGATCCCCAGCGATTA 58.199 50.000 9.90 0.00 44.60 1.75
3121 4037 2.134354 TGTGCATATCTTGGATCCCCA 58.866 47.619 9.90 0.00 41.64 4.96
3164 4080 0.613292 ATGGCGCCATAACCCAACAA 60.613 50.000 39.91 8.92 34.49 2.83
3171 4087 1.032014 AACATGGATGGCGCCATAAC 58.968 50.000 40.56 33.24 46.70 1.89
3172 4088 1.031235 CAACATGGATGGCGCCATAA 58.969 50.000 40.56 30.77 46.70 1.90
3173 4089 1.454572 GCAACATGGATGGCGCCATA 61.455 55.000 40.56 27.38 46.70 2.74
3175 4091 3.451004 GCAACATGGATGGCGCCA 61.451 61.111 34.80 34.80 43.23 5.69
3176 4092 2.713967 AAGCAACATGGATGGCGCC 61.714 57.895 22.73 22.73 31.78 6.53
3177 4093 2.887360 AAGCAACATGGATGGCGC 59.113 55.556 0.00 0.00 0.00 6.53



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.