Multiple sequence alignment - TraesCS6A01G296600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G296600 chr6A 100.000 5594 0 0 1 5594 530119451 530125044 0.000000e+00 10331.0
1 TraesCS6A01G296600 chr6A 82.533 1729 272 27 2896 4613 60224617 60222908 0.000000e+00 1493.0
2 TraesCS6A01G296600 chr6A 79.688 256 39 9 2443 2692 60225083 60224835 7.450000e-39 172.0
3 TraesCS6A01G296600 chr6A 88.764 89 6 2 76 163 60227537 60227452 7.660000e-19 106.0
4 TraesCS6A01G296600 chr6D 95.162 4713 194 17 6 4715 385661017 385665698 0.000000e+00 7409.0
5 TraesCS6A01G296600 chr6D 82.645 1815 267 37 2817 4613 46050894 46049110 0.000000e+00 1563.0
6 TraesCS6A01G296600 chr6D 94.404 822 39 4 4771 5592 385667679 385668493 0.000000e+00 1256.0
7 TraesCS6A01G296600 chr6D 84.000 200 24 7 2433 2631 46051250 46051058 9.570000e-43 185.0
8 TraesCS6A01G296600 chr6D 95.833 72 3 0 4704 4775 385666670 385666741 3.540000e-22 117.0
9 TraesCS6A01G296600 chr6D 89.888 89 5 2 76 163 46053692 46053607 1.650000e-20 111.0
10 TraesCS6A01G296600 chr6D 81.513 119 22 0 2160 2278 46052158 46052040 1.280000e-16 99.0
11 TraesCS6A01G296600 chr6B 93.543 3237 195 7 2356 5591 576017140 576020363 0.000000e+00 4807.0
12 TraesCS6A01G296600 chr6B 93.872 1077 43 7 546 1602 576015169 576016242 0.000000e+00 1602.0
13 TraesCS6A01G296600 chr6B 82.233 1818 278 38 2817 4613 114509376 114507583 0.000000e+00 1526.0
14 TraesCS6A01G296600 chr6B 89.677 465 39 4 6 467 576014533 576014991 8.080000e-163 584.0
15 TraesCS6A01G296600 chr6B 94.460 361 16 1 1654 2010 576016238 576016598 2.280000e-153 553.0
16 TraesCS6A01G296600 chr6B 93.064 346 21 1 2012 2354 576016688 576017033 2.330000e-138 503.0
17 TraesCS6A01G296600 chr6B 81.298 262 37 11 2433 2691 114509787 114509535 9.500000e-48 202.0
18 TraesCS6A01G296600 chr6B 81.739 115 21 0 2164 2278 114510560 114510446 4.610000e-16 97.1
19 TraesCS6A01G296600 chr6B 94.872 39 2 0 387 425 576014508 576014470 1.680000e-05 62.1
20 TraesCS6A01G296600 chr3A 80.723 83 16 0 378 460 509852784 509852866 1.300000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G296600 chr6A 530119451 530125044 5593 False 10331.000000 10331 100.000000 1 5594 1 chr6A.!!$F1 5593
1 TraesCS6A01G296600 chr6A 60222908 60227537 4629 True 590.333333 1493 83.661667 76 4613 3 chr6A.!!$R1 4537
2 TraesCS6A01G296600 chr6D 385661017 385668493 7476 False 2927.333333 7409 95.133000 6 5592 3 chr6D.!!$F1 5586
3 TraesCS6A01G296600 chr6D 46049110 46053692 4582 True 489.500000 1563 84.511500 76 4613 4 chr6D.!!$R1 4537
4 TraesCS6A01G296600 chr6B 576014533 576020363 5830 False 1609.800000 4807 92.923200 6 5591 5 chr6B.!!$F1 5585
5 TraesCS6A01G296600 chr6B 114507583 114510560 2977 True 608.366667 1526 81.756667 2164 4613 3 chr6B.!!$R2 2449

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
344 367 0.467474 TGATGCGTACTCCCTCCGAT 60.467 55.000 0.00 0.00 0.00 4.18 F
884 1086 1.145738 AGTATCCCCATGGCCATTGAC 59.854 52.381 17.92 6.88 0.00 3.18 F
1201 1459 2.165845 TCTTTCCTCGTAGCTAGCAACC 59.834 50.000 18.83 2.74 0.00 3.77 F
1963 2280 3.606595 TCTCATGCCTCAACTCTTCTG 57.393 47.619 0.00 0.00 0.00 3.02 F
2755 4057 1.535833 ACAGTCTACAGTCTGACCGG 58.464 55.000 6.91 0.00 35.63 5.28 F
3991 5321 2.069273 GAGGACAACACTGAATCACGG 58.931 52.381 0.00 0.00 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1647 1958 1.714460 CTTGTGTCGTACTTGCGTCTC 59.286 52.381 0.00 0.0 0.0 3.36 R
2162 2678 2.357009 CCATGCTGCAAAGATAGTCCAC 59.643 50.000 6.36 0.0 0.0 4.02 R
2182 2698 2.514824 GCCATGGCTCTTCCGACC 60.515 66.667 29.98 0.0 37.8 4.79 R
3235 4550 2.939103 GCAACTGAAATCGCCATCTAGT 59.061 45.455 0.00 0.0 0.0 2.57 R
4328 5661 1.232119 ACATGACGAACCGGGTTTTC 58.768 50.000 14.69 13.7 0.0 2.29 R
4929 8187 0.108424 GAGTGCGGTGCTTGAGAGAT 60.108 55.000 0.00 0.0 0.0 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 70 3.979101 TTCGATGCTATCATGGCCATA 57.021 42.857 20.30 7.65 31.96 2.74
65 71 3.979101 TCGATGCTATCATGGCCATAA 57.021 42.857 20.30 3.63 31.96 1.90
66 72 3.865446 TCGATGCTATCATGGCCATAAG 58.135 45.455 20.30 16.79 31.96 1.73
67 73 2.941064 CGATGCTATCATGGCCATAAGG 59.059 50.000 20.30 6.56 31.96 2.69
116 122 1.616865 GGTACTTTTTGGAAGGTGGCC 59.383 52.381 0.00 0.00 0.00 5.36
141 147 3.151710 CCGGGCTCGATGGGTACA 61.152 66.667 8.08 0.00 39.00 2.90
296 314 1.421410 CTGAAGACGGAATTCGGGCG 61.421 60.000 16.41 9.14 44.45 6.13
314 337 1.086696 CGGCGTTGATTTCCATGTCT 58.913 50.000 0.00 0.00 0.00 3.41
344 367 0.467474 TGATGCGTACTCCCTCCGAT 60.467 55.000 0.00 0.00 0.00 4.18
471 497 5.378332 AGAGAGTCTGTACGTAATAGCCAT 58.622 41.667 0.00 0.00 0.00 4.40
500 526 1.226717 GCATGACCGAGACCGACTC 60.227 63.158 0.00 0.00 41.79 3.36
701 898 2.530151 ACCTTCCTGGAGCCTGCA 60.530 61.111 0.00 0.00 39.71 4.41
756 956 4.250464 TCTTTATTTCTGCCGACGACAAT 58.750 39.130 0.00 0.00 0.00 2.71
758 958 5.870433 TCTTTATTTCTGCCGACGACAATAA 59.130 36.000 0.00 0.00 0.00 1.40
762 962 3.034721 TCTGCCGACGACAATAACTTT 57.965 42.857 0.00 0.00 0.00 2.66
827 1027 7.557358 TCATGGCTAGATTGCATTTCTTTAGAA 59.443 33.333 5.14 0.00 34.04 2.10
862 1064 2.098770 GGCTTCAGGCTAGATTGCTTTG 59.901 50.000 0.00 0.00 41.46 2.77
884 1086 1.145738 AGTATCCCCATGGCCATTGAC 59.854 52.381 17.92 6.88 0.00 3.18
1017 1240 4.778143 ATGTCGGTGCGAAGGCCC 62.778 66.667 0.00 0.00 37.72 5.80
1130 1361 3.948473 CTCTCCTTCAGATCGTTAGTCCA 59.052 47.826 0.00 0.00 0.00 4.02
1175 1433 8.592105 TTGGAATGATTTTCAGTTCATGTTTC 57.408 30.769 0.00 0.00 29.24 2.78
1201 1459 2.165845 TCTTTCCTCGTAGCTAGCAACC 59.834 50.000 18.83 2.74 0.00 3.77
1216 1476 5.801947 GCTAGCAACCATGTATCTTTGTTTG 59.198 40.000 10.63 0.00 0.00 2.93
1380 1681 6.235664 TCTTGAGAATTGTTAAGGTACACCC 58.764 40.000 7.19 0.00 36.42 4.61
1414 1715 5.349543 GGGTCGTTAATTTCGTGTGTTCTAT 59.650 40.000 0.00 0.00 0.00 1.98
1429 1740 9.150348 CGTGTGTTCTATATATTGGCATGATAA 57.850 33.333 0.00 0.00 0.00 1.75
1492 1803 3.834489 AGATGGACCTTGCTCTACATG 57.166 47.619 0.00 0.00 0.00 3.21
1538 1849 8.129496 TGGGACTTTGTTTTAGAAGAAAAACT 57.871 30.769 12.00 0.00 45.43 2.66
1616 1927 7.182817 TGGTACAAGTGAGACTAATTATGCT 57.817 36.000 0.00 0.00 31.92 3.79
1631 1942 8.673251 ACTAATTATGCTTCCCTTTAGGATGAT 58.327 33.333 0.00 0.00 46.94 2.45
1632 1943 9.171877 CTAATTATGCTTCCCTTTAGGATGATC 57.828 37.037 0.00 0.00 46.94 2.92
1647 1958 6.023357 AGGATGATCTATGTTCGATCTGTG 57.977 41.667 0.00 0.00 38.43 3.66
1652 1963 4.537936 TCTATGTTCGATCTGTGAGACG 57.462 45.455 0.00 0.00 0.00 4.18
1675 1986 4.378046 GCAAGTACGACACAAGGGTAAATG 60.378 45.833 0.00 0.00 0.00 2.32
1963 2280 3.606595 TCTCATGCCTCAACTCTTCTG 57.393 47.619 0.00 0.00 0.00 3.02
2083 2561 7.338710 AGTAACCAATTGTATGCTCTACACAT 58.661 34.615 4.43 0.00 0.00 3.21
2182 2698 3.011818 TGTGGACTATCTTTGCAGCATG 58.988 45.455 0.00 0.00 40.87 4.06
2202 2718 2.270205 CGGAAGAGCCATGGCAGT 59.730 61.111 37.18 21.65 44.88 4.40
2393 3095 5.820947 AGATAAATGTAACACTAAAGCCGGG 59.179 40.000 2.18 0.00 0.00 5.73
2695 3997 7.872993 TCAGTTACATAGCTTATATTCTGCCAC 59.127 37.037 0.00 0.00 0.00 5.01
2747 4049 3.819564 TTGCAGTCAACAGTCTACAGT 57.180 42.857 0.00 0.00 0.00 3.55
2755 4057 1.535833 ACAGTCTACAGTCTGACCGG 58.464 55.000 6.91 0.00 35.63 5.28
2798 4100 5.593909 TGCAACCTGTTCATATATTTCCTGG 59.406 40.000 0.00 0.00 0.00 4.45
3235 4550 3.258372 CACTGAAGCTGGAGGTACTTGTA 59.742 47.826 0.00 0.00 41.55 2.41
3377 4692 4.147321 AGCAATGAACAATCAAGGAGTGT 58.853 39.130 0.00 0.00 42.74 3.55
3629 4946 6.775629 ACATGTAGCCTTTTTGTTTCTTCCTA 59.224 34.615 0.00 0.00 0.00 2.94
3696 5019 6.938030 ACTACATTAAACCACATTTCCTTCGA 59.062 34.615 0.00 0.00 0.00 3.71
3726 5049 3.844211 TGTACAAGAAGCATTACCCTCCT 59.156 43.478 0.00 0.00 0.00 3.69
3750 5073 7.015098 CCTCTCTTGACTGACAATATATGGAGT 59.985 40.741 0.00 0.00 37.88 3.85
3991 5321 2.069273 GAGGACAACACTGAATCACGG 58.931 52.381 0.00 0.00 0.00 4.94
3998 5328 4.156922 ACAACACTGAATCACGGAAAAACA 59.843 37.500 0.00 0.00 0.00 2.83
4017 5347 8.494016 AAAAACATGTAAAATGGGACGAAAAA 57.506 26.923 0.00 0.00 0.00 1.94
4033 5363 7.084486 GGACGAAAAAGCTACATCTTCAAATT 58.916 34.615 0.00 0.00 0.00 1.82
4067 5397 7.457852 TGTGATGTTATATTCAGCCCTATAGGT 59.542 37.037 17.72 0.27 38.26 3.08
4176 5506 7.698970 TCAATTTGTGAAAAACTAACCGAACTC 59.301 33.333 0.00 0.00 31.51 3.01
4328 5661 0.036765 TTGTCATCGTTTCCTCGGGG 60.037 55.000 0.00 0.00 0.00 5.73
4407 5740 4.765339 TCTCAAAGTGTCGAGTATCTTGGA 59.235 41.667 0.00 0.00 0.00 3.53
4426 5759 4.906618 TGGAAAGTTGGGATCTAGAACAC 58.093 43.478 0.00 0.00 0.00 3.32
4664 5997 5.614308 TCTCATATGTGCAAAGGTGGATAG 58.386 41.667 1.90 0.00 0.00 2.08
4798 8055 0.251077 AAACAGGGCCTCTGAAGCTG 60.251 55.000 23.24 13.46 46.18 4.24
4832 8089 3.751698 ACAACGAAAAGTGGAGGCTTATC 59.248 43.478 0.00 0.00 0.00 1.75
4849 8106 4.855340 CTTATCAAAAGCAACTAGGGGGA 58.145 43.478 0.00 0.00 0.00 4.81
4867 8124 3.445805 GGGGAAATTTTGGCACTTATCGA 59.554 43.478 0.00 0.00 0.00 3.59
4884 8142 9.147364 CACTTATCGATGATATTGAAAACAACG 57.853 33.333 8.54 0.00 0.00 4.10
4929 8187 4.548451 TTTGGCATTTGTCCATTATGCA 57.452 36.364 13.47 0.00 44.91 3.96
4951 8209 1.595109 CTCAAGCACCGCACTCACA 60.595 57.895 0.00 0.00 0.00 3.58
4958 8216 3.434319 CCGCACTCACATGTGGGC 61.434 66.667 25.84 22.79 45.03 5.36
4960 8218 2.260154 CGCACTCACATGTGGGCAA 61.260 57.895 25.84 5.16 42.34 4.52
4991 8249 1.672356 GTGCCAGCACTCACGGATT 60.672 57.895 15.41 0.00 43.12 3.01
5197 8455 5.084818 TGCGAGAACAAGAATGGAAGATA 57.915 39.130 0.00 0.00 0.00 1.98
5198 8456 5.674525 TGCGAGAACAAGAATGGAAGATAT 58.325 37.500 0.00 0.00 0.00 1.63
5280 8538 0.532573 CTGGCGAGCTTCTTAGGACA 59.467 55.000 0.00 0.00 0.00 4.02
5281 8539 1.137872 CTGGCGAGCTTCTTAGGACAT 59.862 52.381 0.00 0.00 0.00 3.06
5293 8551 8.180844 AGCTTCTTAGGACATATATAGTTCCCT 58.819 37.037 8.26 5.35 0.00 4.20
5364 8622 0.827368 GGACCTAGTGAGCCCTTGAG 59.173 60.000 0.00 0.00 0.00 3.02
5427 8685 1.133823 ACAACTCCATGCACCTTCACA 60.134 47.619 0.00 0.00 0.00 3.58
5453 8711 2.108168 AGGTTGGCTGTAATCGCTAGA 58.892 47.619 0.00 0.00 0.00 2.43
5495 8753 0.249120 TAGATCCACGGCAACCACTG 59.751 55.000 0.00 0.00 0.00 3.66
5514 8772 5.897824 CCACTGGAATACTAAAGGTAGGAGA 59.102 44.000 0.00 0.00 33.51 3.71
5567 8825 4.090819 ACCTGGGTAAACTTTGTGTGTTT 58.909 39.130 0.00 0.00 40.27 2.83
5568 8826 4.528987 ACCTGGGTAAACTTTGTGTGTTTT 59.471 37.500 0.00 0.00 38.41 2.43
5592 8850 1.411612 CCTAAGCCCTAATTCGGTCGT 59.588 52.381 0.00 0.00 0.00 4.34
5593 8851 2.545322 CCTAAGCCCTAATTCGGTCGTC 60.545 54.545 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 7.991460 GGCTCCTTAGGTACATTTATTAGTTGT 59.009 37.037 0.00 0.00 0.00 3.32
15 16 6.325804 ACGGCTCCTTAGGTACATTTATTAGT 59.674 38.462 0.00 0.00 0.00 2.24
16 17 6.756221 ACGGCTCCTTAGGTACATTTATTAG 58.244 40.000 0.00 0.00 0.00 1.73
64 70 2.235891 CCTTCCAAAAAGTACCGCCTT 58.764 47.619 0.00 0.00 0.00 4.35
65 71 1.144298 ACCTTCCAAAAAGTACCGCCT 59.856 47.619 0.00 0.00 0.00 5.52
66 72 1.268625 CACCTTCCAAAAAGTACCGCC 59.731 52.381 0.00 0.00 0.00 6.13
67 73 1.951602 ACACCTTCCAAAAAGTACCGC 59.048 47.619 0.00 0.00 0.00 5.68
296 314 3.251004 GGATAGACATGGAAATCAACGCC 59.749 47.826 0.00 0.00 0.00 5.68
314 337 2.626266 AGTACGCATCAATGACCGGATA 59.374 45.455 9.46 0.00 0.00 2.59
363 389 9.981114 ACATTCATTTAAGGGTAAACTTGAAAG 57.019 29.630 0.00 0.00 34.36 2.62
441 467 2.495270 ACGTACAGACTCTCTCCGTCTA 59.505 50.000 0.00 0.00 39.59 2.59
450 476 4.888239 ACATGGCTATTACGTACAGACTCT 59.112 41.667 9.93 0.00 0.00 3.24
471 497 1.484240 TCGGTCATGCATGTCCATACA 59.516 47.619 32.77 16.59 40.69 2.29
477 503 1.148157 CGGTCTCGGTCATGCATGTC 61.148 60.000 25.43 19.92 0.00 3.06
500 526 0.781787 TTGCGAGTCGTCAAATCGTG 59.218 50.000 15.08 0.00 38.66 4.35
575 701 3.451894 CCGGAGGCAATGGGCAAC 61.452 66.667 0.00 0.00 46.14 4.17
756 956 5.706916 ACGTAGAGAAATCGCTGAAAGTTA 58.293 37.500 0.00 0.00 35.30 2.24
758 958 4.175787 ACGTAGAGAAATCGCTGAAAGT 57.824 40.909 0.00 0.00 35.30 2.66
762 962 2.033049 GCCTACGTAGAGAAATCGCTGA 59.967 50.000 24.15 0.00 0.00 4.26
827 1027 9.581289 CTAGCCTGAAGCCATATATATACTAGT 57.419 37.037 0.00 0.00 45.47 2.57
862 1064 0.779997 AATGGCCATGGGGATACTCC 59.220 55.000 21.63 4.50 34.32 3.85
1017 1240 1.597461 GTCTTCCTCTTCACCCCGG 59.403 63.158 0.00 0.00 0.00 5.73
1023 1246 0.522180 GCTCGTCGTCTTCCTCTTCA 59.478 55.000 0.00 0.00 0.00 3.02
1107 1338 3.243267 GGACTAACGATCTGAAGGAGAGC 60.243 52.174 0.00 0.00 32.80 4.09
1130 1361 5.833131 TCCAAAAGCCAGAAGTTAAGTGAAT 59.167 36.000 0.00 0.00 0.00 2.57
1175 1433 3.731717 GCTAGCTACGAGGAAAGAAATCG 59.268 47.826 7.70 0.00 42.04 3.34
1201 1459 7.864379 AGAAGAAGCAACAAACAAAGATACATG 59.136 33.333 0.00 0.00 0.00 3.21
1216 1476 3.000724 CGGATCGATCAAGAAGAAGCAAC 59.999 47.826 25.93 3.82 0.00 4.17
1538 1849 3.096852 TCTTTTGATACAGAGGCCGAGA 58.903 45.455 0.00 0.00 0.00 4.04
1631 1942 3.242772 GCGTCTCACAGATCGAACATAGA 60.243 47.826 0.00 0.00 0.00 1.98
1632 1943 3.039405 GCGTCTCACAGATCGAACATAG 58.961 50.000 0.00 0.00 0.00 2.23
1647 1958 1.714460 CTTGTGTCGTACTTGCGTCTC 59.286 52.381 0.00 0.00 0.00 3.36
1652 1963 2.443887 TACCCTTGTGTCGTACTTGC 57.556 50.000 0.00 0.00 0.00 4.01
1660 1971 6.177610 TGGATAAGACATTTACCCTTGTGTC 58.822 40.000 0.00 0.00 40.87 3.67
1767 2078 5.701750 CAGACCAAAAATCATTTCATGCCAA 59.298 36.000 0.00 0.00 0.00 4.52
2083 2561 9.431887 GCCACGAATATGGATATTTAGAACTTA 57.568 33.333 0.00 0.00 43.02 2.24
2162 2678 2.357009 CCATGCTGCAAAGATAGTCCAC 59.643 50.000 6.36 0.00 0.00 4.02
2182 2698 2.514824 GCCATGGCTCTTCCGACC 60.515 66.667 29.98 0.00 37.80 4.79
2202 2718 2.677836 GCAATTTGCTCGATAGTGTCCA 59.322 45.455 14.11 0.00 40.96 4.02
2582 3855 8.199449 TGCTGAGAAAAGATGTTTTGAATTTCT 58.801 29.630 5.14 0.00 39.19 2.52
2591 3864 4.756642 TGATCGTGCTGAGAAAAGATGTTT 59.243 37.500 0.00 0.00 0.00 2.83
2713 4015 7.542890 TGTTGACTGCAAAAGTATGAAGAAAA 58.457 30.769 0.00 0.00 40.07 2.29
2798 4100 3.825143 AAATAGGATGGTGCAAATGGC 57.175 42.857 0.00 0.00 45.13 4.40
3235 4550 2.939103 GCAACTGAAATCGCCATCTAGT 59.061 45.455 0.00 0.00 0.00 2.57
3377 4692 5.892686 TGAAAGCCACATCATTAATCATGGA 59.107 36.000 4.24 0.00 33.07 3.41
3629 4946 6.696042 TGTATGCCAAGGTATATGGTATGT 57.304 37.500 6.43 0.00 42.33 2.29
3640 4957 5.116084 ACTTCACATATGTATGCCAAGGT 57.884 39.130 8.32 0.00 37.19 3.50
3696 5019 7.985752 GGGTAATGCTTCTTGTACACTAGTAAT 59.014 37.037 0.00 0.00 30.67 1.89
3726 5049 7.782168 AGACTCCATATATTGTCAGTCAAGAGA 59.218 37.037 10.85 0.00 39.55 3.10
3750 5073 5.767665 TCCATCTTTTCCGATGTTTTTGAGA 59.232 36.000 0.00 0.00 39.26 3.27
3874 5197 7.750229 AGTATGCACATAATTTCCACTATGG 57.250 36.000 0.00 0.00 39.43 2.74
3991 5321 7.701809 TTTCGTCCCATTTTACATGTTTTTC 57.298 32.000 2.30 0.00 0.00 2.29
3998 5328 5.722021 AGCTTTTTCGTCCCATTTTACAT 57.278 34.783 0.00 0.00 0.00 2.29
4033 5363 6.318648 GCTGAATATAACATCACACCCTTCAA 59.681 38.462 0.00 0.00 0.00 2.69
4067 5397 5.711506 TCCAATTCTTGCTGCTAAAATCTCA 59.288 36.000 0.00 0.00 0.00 3.27
4176 5506 8.999220 AATAAAGGAGAAGTAAGAAACTACCG 57.001 34.615 0.00 0.00 37.50 4.02
4328 5661 1.232119 ACATGACGAACCGGGTTTTC 58.768 50.000 14.69 13.70 0.00 2.29
4407 5740 4.993705 TGGTGTTCTAGATCCCAACTTT 57.006 40.909 0.00 0.00 0.00 2.66
4426 5759 3.676873 GCCATTGTAGCATTGGAAGTTGG 60.677 47.826 12.53 0.00 37.13 3.77
4618 5951 2.304092 TGAGCATTCATCTTGCATCCC 58.696 47.619 0.00 0.00 42.62 3.85
4745 7061 5.536161 AGCTTTGCCAATTTCTTCTGTAAGA 59.464 36.000 0.00 0.00 44.68 2.10
4798 8055 5.569059 CACTTTTCGTTGTCATCTTTATGGC 59.431 40.000 0.00 0.00 38.26 4.40
4832 8089 4.890158 AATTTCCCCCTAGTTGCTTTTG 57.110 40.909 0.00 0.00 0.00 2.44
4849 8106 9.467258 CAATATCATCGATAAGTGCCAAAATTT 57.533 29.630 0.00 0.00 0.00 1.82
4867 8124 5.346551 TCGTCGTCGTTGTTTTCAATATCAT 59.653 36.000 1.33 0.00 42.08 2.45
4929 8187 0.108424 GAGTGCGGTGCTTGAGAGAT 60.108 55.000 0.00 0.00 0.00 2.75
4958 8216 1.503542 GCACCTCAGGCACGAATTG 59.496 57.895 0.00 0.00 0.00 2.32
4960 8218 2.045926 GGCACCTCAGGCACGAAT 60.046 61.111 0.00 0.00 0.00 3.34
4991 8249 6.223120 CCGGATCATTTCATGTCACTATGTA 58.777 40.000 0.00 0.00 0.00 2.29
5099 8357 1.112916 TGCCACTTCGACTCTGGTCA 61.113 55.000 4.54 1.44 42.21 4.02
5293 8551 0.454600 CGCGTGCTACCCTTCTTAGA 59.545 55.000 0.00 0.00 0.00 2.10
5309 8567 1.278238 GTCCTTAGGTCACATTCGCG 58.722 55.000 0.00 0.00 0.00 5.87
5381 8639 7.844779 TCCAGGAAAGTAGATATGTCCTAGTTT 59.155 37.037 0.00 0.00 40.49 2.66
5427 8685 2.171003 GATTACAGCCAACCTTGCCTT 58.829 47.619 0.00 0.00 0.00 4.35
5453 8711 3.303938 AGGATCATCGGTGAGATCTGTT 58.696 45.455 3.97 0.00 40.32 3.16
5483 8741 0.690762 AGTATTCCAGTGGTTGCCGT 59.309 50.000 9.54 0.00 0.00 5.68
5495 8753 7.731235 AGATCCTTCTCCTACCTTTAGTATTCC 59.269 40.741 0.00 0.00 0.00 3.01
5567 8825 2.704065 CCGAATTAGGGCTTAGGGAGAA 59.296 50.000 0.00 0.00 0.00 2.87
5568 8826 2.326428 CCGAATTAGGGCTTAGGGAGA 58.674 52.381 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.