Multiple sequence alignment - TraesCS6A01G296200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G296200 chr6A 100.000 2640 0 0 1 2640 529602491 529599852 0.000000e+00 4876
1 TraesCS6A01G296200 chr6B 88.744 1768 98 35 116 1813 575332277 575330541 0.000000e+00 2069
2 TraesCS6A01G296200 chr6B 84.483 116 5 7 1826 1938 575330569 575330464 4.650000e-18 102
3 TraesCS6A01G296200 chr6D 86.834 1876 96 49 11 1813 385234983 385233186 0.000000e+00 1956
4 TraesCS6A01G296200 chr6D 83.019 212 13 13 1990 2181 385233014 385232806 1.260000e-38 171
5 TraesCS6A01G296200 chr3B 83.795 469 74 2 2171 2639 9960509 9960043 6.710000e-121 444
6 TraesCS6A01G296200 chr3B 82.900 462 77 2 2172 2632 367669201 367669661 5.260000e-112 414
7 TraesCS6A01G296200 chr7D 83.652 471 75 2 2172 2640 174672991 174673461 2.410000e-120 442
8 TraesCS6A01G296200 chr7D 80.810 469 88 2 2172 2638 488611508 488611976 1.490000e-97 366
9 TraesCS6A01G296200 chr7D 80.213 470 90 3 2172 2638 55069538 55069069 1.500000e-92 350
10 TraesCS6A01G296200 chr5B 85.638 376 52 2 2172 2545 115421081 115421456 6.850000e-106 394
11 TraesCS6A01G296200 chr5B 81.702 470 84 2 2173 2640 65069006 65068537 8.860000e-105 390
12 TraesCS6A01G296200 chr5B 81.638 354 64 1 2175 2528 587360095 587360447 2.570000e-75 292
13 TraesCS6A01G296200 chr4D 79.167 432 79 9 2166 2591 455659980 455660406 3.320000e-74 289


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G296200 chr6A 529599852 529602491 2639 True 4876.0 4876 100.0000 1 2640 1 chr6A.!!$R1 2639
1 TraesCS6A01G296200 chr6B 575330464 575332277 1813 True 1085.5 2069 86.6135 116 1938 2 chr6B.!!$R1 1822
2 TraesCS6A01G296200 chr6D 385232806 385234983 2177 True 1063.5 1956 84.9265 11 2181 2 chr6D.!!$R1 2170

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 323 0.040781 AAACCAATTCCACGCGTTCG 60.041 50.0 10.22 2.04 42.43 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1651 1748 0.031994 ACGCAGCACCATCCAAAAAC 59.968 50.0 0.0 0.0 0.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.657840 GCTTATCAGCGGAATTGCGT 59.342 50.000 20.72 4.99 40.67 5.24
96 97 1.026182 TTGCTGCGCCTGATGGTAAG 61.026 55.000 4.18 0.00 35.27 2.34
106 107 4.434520 GCCTGATGGTAAGTCTTGAGTAC 58.565 47.826 0.00 0.00 35.27 2.73
107 108 4.673441 CCTGATGGTAAGTCTTGAGTACG 58.327 47.826 0.00 0.00 0.00 3.67
178 179 4.250431 GCGCACACACACACACCC 62.250 66.667 0.30 0.00 0.00 4.61
182 183 2.202824 ACACACACACACCCGTCG 60.203 61.111 0.00 0.00 0.00 5.12
320 323 0.040781 AAACCAATTCCACGCGTTCG 60.041 50.000 10.22 2.04 42.43 3.95
353 356 4.821589 CTGCCGTTCCGCCCTCTC 62.822 72.222 0.00 0.00 0.00 3.20
363 366 3.917760 GCCCTCTCCCCGATCACG 61.918 72.222 0.00 0.00 39.43 4.35
472 478 3.817647 ACTATACGTATCCGTCTGTTCCC 59.182 47.826 12.24 0.00 46.28 3.97
485 491 4.649705 TTCCCCGGCTCCCACAGA 62.650 66.667 0.00 0.00 0.00 3.41
550 559 5.516339 GGAAATACTCAAATGGATTTGCACG 59.484 40.000 7.15 2.15 45.06 5.34
567 576 6.509418 TTGCACGGCTTATTTTTAGAAGAT 57.491 33.333 0.00 0.00 0.00 2.40
581 590 7.928307 TTTTAGAAGATCAGTTGGATTGGAG 57.072 36.000 0.00 0.00 36.00 3.86
678 687 4.636435 CGTGGAGGGCCCGTTGTT 62.636 66.667 18.44 0.00 37.93 2.83
736 745 2.050168 GCGACGTCAACCCGTACA 60.050 61.111 17.16 0.00 41.98 2.90
737 746 2.367344 GCGACGTCAACCCGTACAC 61.367 63.158 17.16 0.00 41.98 2.90
738 747 1.730547 CGACGTCAACCCGTACACC 60.731 63.158 17.16 0.00 41.98 4.16
739 748 1.730547 GACGTCAACCCGTACACCG 60.731 63.158 11.55 0.00 41.98 4.94
1054 1088 2.983592 GGCTGGGTTGAACCGGTG 60.984 66.667 8.52 2.06 39.83 4.94
1134 1194 0.102120 AGGCGCGAGAAAGATCAGAG 59.898 55.000 12.10 0.00 0.00 3.35
1482 1566 6.860080 TCTCTCGTCGTGTATTAGGATTTTT 58.140 36.000 0.00 0.00 0.00 1.94
1483 1567 6.971184 TCTCTCGTCGTGTATTAGGATTTTTC 59.029 38.462 0.00 0.00 0.00 2.29
1484 1568 6.860080 TCTCGTCGTGTATTAGGATTTTTCT 58.140 36.000 0.00 0.00 0.00 2.52
1485 1569 7.318141 TCTCGTCGTGTATTAGGATTTTTCTT 58.682 34.615 0.00 0.00 0.00 2.52
1486 1570 7.816031 TCTCGTCGTGTATTAGGATTTTTCTTT 59.184 33.333 0.00 0.00 0.00 2.52
1508 1592 9.634163 TCTTTCTTTTACTTTTTCTTTGGTGAC 57.366 29.630 0.00 0.00 0.00 3.67
1513 1597 2.430694 ACTTTTTCTTTGGTGACCCTGC 59.569 45.455 0.00 0.00 0.00 4.85
1519 1603 1.434513 TTTGGTGACCCTGCCCATCT 61.435 55.000 0.00 0.00 0.00 2.90
1534 1618 0.256752 CATCTGTGGATGGGGCAGAA 59.743 55.000 0.00 0.00 43.97 3.02
1539 1623 0.533755 GTGGATGGGGCAGAAGATCG 60.534 60.000 0.00 0.00 0.00 3.69
1564 1648 1.523938 GCTGGTGATTAGGGCGTCC 60.524 63.158 0.00 0.00 0.00 4.79
1578 1675 1.017387 GCGTCCTTCCATGATGGTTC 58.983 55.000 11.87 0.00 39.03 3.62
1624 1721 1.971357 TGAGTTGTCAGTCTCTTCCCC 59.029 52.381 8.06 0.00 0.00 4.81
1651 1748 5.592688 TCCAGTTTAGGAAACAAAACAGGAG 59.407 40.000 7.68 0.00 42.71 3.69
1680 1777 4.143137 GGATGGTGCTGCGTTTTTATTTTG 60.143 41.667 0.00 0.00 0.00 2.44
1688 1785 8.272866 GTGCTGCGTTTTTATTTTGTTCTATTT 58.727 29.630 0.00 0.00 0.00 1.40
1689 1786 9.464714 TGCTGCGTTTTTATTTTGTTCTATTTA 57.535 25.926 0.00 0.00 0.00 1.40
1710 1810 3.976793 ATTTATGCCTGCGATTGTGAG 57.023 42.857 0.00 0.00 0.00 3.51
1732 1832 7.656948 GTGAGAAGAGATTATGCATAGAGCTTT 59.343 37.037 6.50 1.05 45.94 3.51
1733 1833 8.864087 TGAGAAGAGATTATGCATAGAGCTTTA 58.136 33.333 6.50 0.00 45.94 1.85
1734 1834 9.357652 GAGAAGAGATTATGCATAGAGCTTTAG 57.642 37.037 6.50 0.00 45.94 1.85
1735 1835 8.313292 AGAAGAGATTATGCATAGAGCTTTAGG 58.687 37.037 6.50 0.00 45.94 2.69
1736 1836 7.552050 AGAGATTATGCATAGAGCTTTAGGT 57.448 36.000 6.50 0.00 45.94 3.08
1773 1878 2.435805 TGCTATGGGTCTGAAGATGTCC 59.564 50.000 0.00 0.00 0.00 4.02
1780 1891 5.777449 TGGGTCTGAAGATGTCCTCTTATA 58.223 41.667 0.00 0.00 44.42 0.98
1785 1896 7.441017 GTCTGAAGATGTCCTCTTATATTGCT 58.559 38.462 0.00 0.00 44.42 3.91
1795 1906 7.712639 TGTCCTCTTATATTGCTTGAAGATGTC 59.287 37.037 0.00 0.00 0.00 3.06
1796 1907 7.712639 GTCCTCTTATATTGCTTGAAGATGTCA 59.287 37.037 0.00 0.00 0.00 3.58
1797 1908 8.267183 TCCTCTTATATTGCTTGAAGATGTCAA 58.733 33.333 0.00 0.00 44.20 3.18
1798 1909 8.341173 CCTCTTATATTGCTTGAAGATGTCAAC 58.659 37.037 0.00 0.00 41.47 3.18
1799 1910 9.107177 CTCTTATATTGCTTGAAGATGTCAACT 57.893 33.333 0.00 0.00 41.47 3.16
1800 1911 9.102757 TCTTATATTGCTTGAAGATGTCAACTC 57.897 33.333 0.00 0.00 41.47 3.01
1801 1912 9.107177 CTTATATTGCTTGAAGATGTCAACTCT 57.893 33.333 0.00 0.00 41.47 3.24
1802 1913 7.934855 ATATTGCTTGAAGATGTCAACTCTT 57.065 32.000 0.00 0.00 41.47 2.85
1804 1915 7.934855 ATTGCTTGAAGATGTCAACTCTTAT 57.065 32.000 0.00 0.00 41.47 1.73
1805 1916 6.974932 TGCTTGAAGATGTCAACTCTTATC 57.025 37.500 0.00 0.00 41.47 1.75
1806 1917 6.705302 TGCTTGAAGATGTCAACTCTTATCT 58.295 36.000 0.00 0.00 41.47 1.98
1807 1918 6.592994 TGCTTGAAGATGTCAACTCTTATCTG 59.407 38.462 0.00 0.00 41.47 2.90
1808 1919 6.815641 GCTTGAAGATGTCAACTCTTATCTGA 59.184 38.462 0.00 0.00 41.47 3.27
1809 1920 7.332926 GCTTGAAGATGTCAACTCTTATCTGAA 59.667 37.037 0.00 0.00 41.47 3.02
1810 1921 9.212641 CTTGAAGATGTCAACTCTTATCTGAAA 57.787 33.333 0.00 0.00 41.47 2.69
1811 1922 9.730705 TTGAAGATGTCAACTCTTATCTGAAAT 57.269 29.630 0.00 0.00 41.47 2.17
1828 1939 8.970859 ATCTGAAATAGTACATCTTTTCCCTG 57.029 34.615 0.00 0.00 0.00 4.45
1872 2057 3.190878 GGCTCAACAATGCCTCCG 58.809 61.111 0.00 0.00 45.26 4.63
1873 2058 1.675641 GGCTCAACAATGCCTCCGT 60.676 57.895 0.00 0.00 45.26 4.69
1874 2059 1.648467 GGCTCAACAATGCCTCCGTC 61.648 60.000 0.00 0.00 45.26 4.79
1875 2060 1.970917 GCTCAACAATGCCTCCGTCG 61.971 60.000 0.00 0.00 0.00 5.12
1908 2093 3.596214 TGCTGATTACCCGAAGAAGAAC 58.404 45.455 0.00 0.00 0.00 3.01
1910 2095 3.618997 GCTGATTACCCGAAGAAGAACCA 60.619 47.826 0.00 0.00 0.00 3.67
1912 2097 2.467566 TTACCCGAAGAAGAACCAGC 57.532 50.000 0.00 0.00 0.00 4.85
1916 2101 2.572104 ACCCGAAGAAGAACCAGCTAAT 59.428 45.455 0.00 0.00 0.00 1.73
1919 2104 3.619038 CCGAAGAAGAACCAGCTAATGAC 59.381 47.826 0.00 0.00 0.00 3.06
1924 2109 5.564550 AGAAGAACCAGCTAATGACAACAT 58.435 37.500 0.00 0.00 38.50 2.71
1928 2113 3.002791 ACCAGCTAATGACAACATGACG 58.997 45.455 0.00 0.00 36.79 4.35
1941 2126 5.741011 ACAACATGACGGGATTAGTACAAT 58.259 37.500 0.00 0.00 0.00 2.71
1942 2127 6.880484 ACAACATGACGGGATTAGTACAATA 58.120 36.000 0.00 0.00 0.00 1.90
1943 2128 7.332557 ACAACATGACGGGATTAGTACAATAA 58.667 34.615 0.00 0.00 0.00 1.40
1944 2129 7.990886 ACAACATGACGGGATTAGTACAATAAT 59.009 33.333 0.00 0.00 0.00 1.28
1945 2130 9.483916 CAACATGACGGGATTAGTACAATAATA 57.516 33.333 0.00 0.00 0.00 0.98
2009 2194 2.942752 GCATTCATTGCCCAGAGACTGA 60.943 50.000 0.00 0.00 46.15 3.41
2010 2195 3.552875 CATTCATTGCCCAGAGACTGAT 58.447 45.455 0.00 0.00 32.44 2.90
2011 2196 2.704464 TCATTGCCCAGAGACTGATG 57.296 50.000 0.00 0.00 32.44 3.07
2012 2197 2.190538 TCATTGCCCAGAGACTGATGA 58.809 47.619 0.00 0.00 32.44 2.92
2023 2208 6.463472 CCCAGAGACTGATGATTGCAGTAATA 60.463 42.308 0.00 0.00 45.94 0.98
2036 2221 9.066892 TGATTGCAGTAATAATTCCAGGATAAC 57.933 33.333 0.00 0.00 0.00 1.89
2109 2314 6.859508 TGTGTAAAACGCCTCTCATATATACG 59.140 38.462 0.00 0.00 0.00 3.06
2120 2325 6.754209 CCTCTCATATATACGCATTCAGTTCC 59.246 42.308 0.00 0.00 0.00 3.62
2130 2335 1.577328 ATTCAGTTCCGGTTGCTGCG 61.577 55.000 0.00 0.00 0.00 5.18
2163 2368 7.787623 AGAGGAAATGGTGAAAGATCAAAAT 57.212 32.000 0.00 0.00 37.30 1.82
2170 2375 4.904251 TGGTGAAAGATCAAAATTGGGGAA 59.096 37.500 0.00 0.00 37.30 3.97
2173 2378 6.942005 GGTGAAAGATCAAAATTGGGGAATTT 59.058 34.615 0.00 0.00 37.30 1.82
2209 2414 7.545362 AGCATAGCTTCATTACTTAACTGTG 57.455 36.000 0.00 0.00 33.89 3.66
2210 2415 6.540189 AGCATAGCTTCATTACTTAACTGTGG 59.460 38.462 0.00 0.00 33.89 4.17
2211 2416 6.316390 GCATAGCTTCATTACTTAACTGTGGT 59.684 38.462 0.00 0.00 0.00 4.16
2212 2417 7.677276 GCATAGCTTCATTACTTAACTGTGGTG 60.677 40.741 0.00 0.00 0.00 4.17
2213 2418 5.865085 AGCTTCATTACTTAACTGTGGTGA 58.135 37.500 0.00 0.00 0.00 4.02
2214 2419 5.934625 AGCTTCATTACTTAACTGTGGTGAG 59.065 40.000 0.00 0.00 0.00 3.51
2215 2420 5.122396 GCTTCATTACTTAACTGTGGTGAGG 59.878 44.000 0.00 0.00 0.00 3.86
2216 2421 4.575885 TCATTACTTAACTGTGGTGAGGC 58.424 43.478 0.00 0.00 0.00 4.70
2217 2422 4.041075 TCATTACTTAACTGTGGTGAGGCA 59.959 41.667 0.00 0.00 0.00 4.75
2218 2423 4.634012 TTACTTAACTGTGGTGAGGCAT 57.366 40.909 0.00 0.00 0.00 4.40
2219 2424 5.748670 TTACTTAACTGTGGTGAGGCATA 57.251 39.130 0.00 0.00 0.00 3.14
2220 2425 4.844349 ACTTAACTGTGGTGAGGCATAT 57.156 40.909 0.00 0.00 0.00 1.78
2221 2426 4.770795 ACTTAACTGTGGTGAGGCATATC 58.229 43.478 0.00 0.00 0.00 1.63
2222 2427 2.315925 AACTGTGGTGAGGCATATCG 57.684 50.000 0.00 0.00 0.00 2.92
2223 2428 0.179073 ACTGTGGTGAGGCATATCGC 60.179 55.000 0.00 0.00 41.28 4.58
2233 2438 2.476772 GCATATCGCCCACAACACA 58.523 52.632 0.00 0.00 32.94 3.72
2234 2439 1.024271 GCATATCGCCCACAACACAT 58.976 50.000 0.00 0.00 32.94 3.21
2235 2440 1.405105 GCATATCGCCCACAACACATT 59.595 47.619 0.00 0.00 32.94 2.71
2236 2441 2.541588 GCATATCGCCCACAACACATTC 60.542 50.000 0.00 0.00 32.94 2.67
2237 2442 2.481289 TATCGCCCACAACACATTCA 57.519 45.000 0.00 0.00 0.00 2.57
2238 2443 0.881118 ATCGCCCACAACACATTCAC 59.119 50.000 0.00 0.00 0.00 3.18
2239 2444 1.169661 TCGCCCACAACACATTCACC 61.170 55.000 0.00 0.00 0.00 4.02
2240 2445 1.665442 GCCCACAACACATTCACCC 59.335 57.895 0.00 0.00 0.00 4.61
2241 2446 1.112315 GCCCACAACACATTCACCCA 61.112 55.000 0.00 0.00 0.00 4.51
2242 2447 0.673437 CCCACAACACATTCACCCAC 59.327 55.000 0.00 0.00 0.00 4.61
2243 2448 1.691196 CCACAACACATTCACCCACT 58.309 50.000 0.00 0.00 0.00 4.00
2244 2449 1.608590 CCACAACACATTCACCCACTC 59.391 52.381 0.00 0.00 0.00 3.51
2245 2450 1.264020 CACAACACATTCACCCACTCG 59.736 52.381 0.00 0.00 0.00 4.18
2246 2451 0.874390 CAACACATTCACCCACTCGG 59.126 55.000 0.00 0.00 37.81 4.63
2256 2461 3.309582 CCACTCGGGCTGGTACAT 58.690 61.111 0.00 0.00 38.20 2.29
2257 2462 1.144057 CCACTCGGGCTGGTACATC 59.856 63.158 0.00 0.00 38.20 3.06
2258 2463 1.226974 CACTCGGGCTGGTACATCG 60.227 63.158 0.00 0.00 38.20 3.84
2259 2464 2.417516 CTCGGGCTGGTACATCGG 59.582 66.667 0.00 0.00 38.20 4.18
2260 2465 2.043752 TCGGGCTGGTACATCGGA 60.044 61.111 0.00 0.00 38.20 4.55
2261 2466 2.106332 CGGGCTGGTACATCGGAC 59.894 66.667 0.00 0.00 38.20 4.79
2262 2467 2.423898 CGGGCTGGTACATCGGACT 61.424 63.158 0.00 0.00 38.20 3.85
2263 2468 1.442148 GGGCTGGTACATCGGACTC 59.558 63.158 0.00 0.00 38.20 3.36
2264 2469 1.442148 GGCTGGTACATCGGACTCC 59.558 63.158 0.00 0.00 38.20 3.85
2265 2470 1.442148 GCTGGTACATCGGACTCCC 59.558 63.158 0.00 0.00 38.20 4.30
2266 2471 1.327690 GCTGGTACATCGGACTCCCA 61.328 60.000 0.00 0.00 38.20 4.37
2267 2472 1.191535 CTGGTACATCGGACTCCCAA 58.808 55.000 0.00 0.00 38.20 4.12
2268 2473 1.553248 CTGGTACATCGGACTCCCAAA 59.447 52.381 0.00 0.00 38.20 3.28
2269 2474 1.276989 TGGTACATCGGACTCCCAAAC 59.723 52.381 0.00 0.00 0.00 2.93
2270 2475 1.406477 GGTACATCGGACTCCCAAACC 60.406 57.143 0.00 0.00 0.00 3.27
2271 2476 1.276989 GTACATCGGACTCCCAAACCA 59.723 52.381 0.00 0.00 0.00 3.67
2272 2477 0.768622 ACATCGGACTCCCAAACCAA 59.231 50.000 0.00 0.00 0.00 3.67
2273 2478 1.144093 ACATCGGACTCCCAAACCAAA 59.856 47.619 0.00 0.00 0.00 3.28
2274 2479 1.539827 CATCGGACTCCCAAACCAAAC 59.460 52.381 0.00 0.00 0.00 2.93
2275 2480 0.547075 TCGGACTCCCAAACCAAACA 59.453 50.000 0.00 0.00 0.00 2.83
2276 2481 0.951558 CGGACTCCCAAACCAAACAG 59.048 55.000 0.00 0.00 0.00 3.16
2277 2482 1.749286 CGGACTCCCAAACCAAACAGT 60.749 52.381 0.00 0.00 0.00 3.55
2278 2483 1.681264 GGACTCCCAAACCAAACAGTG 59.319 52.381 0.00 0.00 0.00 3.66
2286 2491 4.571243 CCAAACAGTGGTCGGGTT 57.429 55.556 0.00 0.00 43.20 4.11
2287 2492 2.327228 CCAAACAGTGGTCGGGTTC 58.673 57.895 0.00 0.00 43.20 3.62
2288 2493 0.464735 CCAAACAGTGGTCGGGTTCA 60.465 55.000 0.00 0.00 43.20 3.18
2289 2494 0.661020 CAAACAGTGGTCGGGTTCAC 59.339 55.000 0.00 0.00 0.00 3.18
2290 2495 0.253610 AAACAGTGGTCGGGTTCACA 59.746 50.000 0.00 0.00 36.43 3.58
2291 2496 0.472471 AACAGTGGTCGGGTTCACAT 59.528 50.000 0.00 0.00 36.43 3.21
2292 2497 0.472471 ACAGTGGTCGGGTTCACATT 59.528 50.000 0.00 0.00 36.43 2.71
2293 2498 0.874390 CAGTGGTCGGGTTCACATTG 59.126 55.000 0.00 0.00 36.43 2.82
2294 2499 0.250727 AGTGGTCGGGTTCACATTGG 60.251 55.000 0.00 0.00 36.43 3.16
2295 2500 1.602323 TGGTCGGGTTCACATTGGC 60.602 57.895 0.00 0.00 0.00 4.52
2296 2501 2.686816 GGTCGGGTTCACATTGGCG 61.687 63.158 0.00 0.00 0.00 5.69
2297 2502 2.359354 TCGGGTTCACATTGGCGG 60.359 61.111 0.00 0.00 0.00 6.13
2298 2503 4.114997 CGGGTTCACATTGGCGGC 62.115 66.667 0.00 0.00 0.00 6.53
2299 2504 3.758931 GGGTTCACATTGGCGGCC 61.759 66.667 13.32 13.32 0.00 6.13
2300 2505 2.988684 GGTTCACATTGGCGGCCA 60.989 61.111 19.77 19.77 0.00 5.36
2321 2526 6.246420 CCAATATTGGCTAGCTTATGTGTC 57.754 41.667 21.32 0.00 42.21 3.67
2322 2527 5.764686 CCAATATTGGCTAGCTTATGTGTCA 59.235 40.000 21.32 0.00 42.21 3.58
2323 2528 6.432162 CCAATATTGGCTAGCTTATGTGTCAT 59.568 38.462 21.32 0.00 42.21 3.06
2324 2529 7.607607 CCAATATTGGCTAGCTTATGTGTCATA 59.392 37.037 21.32 0.00 42.21 2.15
2325 2530 8.663025 CAATATTGGCTAGCTTATGTGTCATAG 58.337 37.037 15.72 0.00 0.00 2.23
2326 2531 5.869649 TTGGCTAGCTTATGTGTCATAGA 57.130 39.130 15.72 0.00 0.00 1.98
2327 2532 5.869649 TGGCTAGCTTATGTGTCATAGAA 57.130 39.130 15.72 0.00 0.00 2.10
2328 2533 6.425210 TGGCTAGCTTATGTGTCATAGAAT 57.575 37.500 15.72 0.00 0.00 2.40
2329 2534 6.830912 TGGCTAGCTTATGTGTCATAGAATT 58.169 36.000 15.72 0.00 0.00 2.17
2330 2535 6.931281 TGGCTAGCTTATGTGTCATAGAATTC 59.069 38.462 15.72 0.00 0.00 2.17
2331 2536 6.090088 GGCTAGCTTATGTGTCATAGAATTCG 59.910 42.308 15.72 0.00 0.00 3.34
2332 2537 5.914085 AGCTTATGTGTCATAGAATTCGC 57.086 39.130 0.00 0.00 0.00 4.70
2333 2538 5.359756 AGCTTATGTGTCATAGAATTCGCA 58.640 37.500 0.00 0.00 0.00 5.10
2334 2539 5.235186 AGCTTATGTGTCATAGAATTCGCAC 59.765 40.000 0.00 6.52 0.00 5.34
2335 2540 5.559035 GCTTATGTGTCATAGAATTCGCACC 60.559 44.000 0.00 0.00 0.00 5.01
2336 2541 3.326836 TGTGTCATAGAATTCGCACCA 57.673 42.857 0.00 0.00 0.00 4.17
2337 2542 3.000041 TGTGTCATAGAATTCGCACCAC 59.000 45.455 0.00 5.73 0.00 4.16
2338 2543 2.029244 GTGTCATAGAATTCGCACCACG 59.971 50.000 0.00 0.00 45.62 4.94
2339 2544 2.268298 GTCATAGAATTCGCACCACGT 58.732 47.619 0.00 0.00 44.19 4.49
2340 2545 2.281762 GTCATAGAATTCGCACCACGTC 59.718 50.000 0.00 0.00 44.19 4.34
2341 2546 2.165641 TCATAGAATTCGCACCACGTCT 59.834 45.455 0.00 0.00 44.19 4.18
2342 2547 3.379057 TCATAGAATTCGCACCACGTCTA 59.621 43.478 0.00 0.00 44.19 2.59
2343 2548 1.992170 AGAATTCGCACCACGTCTAC 58.008 50.000 0.00 0.00 44.19 2.59
2344 2549 1.271379 AGAATTCGCACCACGTCTACA 59.729 47.619 0.00 0.00 44.19 2.74
2345 2550 2.063266 GAATTCGCACCACGTCTACAA 58.937 47.619 0.00 0.00 44.19 2.41
2346 2551 2.157834 ATTCGCACCACGTCTACAAA 57.842 45.000 0.00 0.00 44.19 2.83
2347 2552 1.210870 TTCGCACCACGTCTACAAAC 58.789 50.000 0.00 0.00 44.19 2.93
2348 2553 0.102663 TCGCACCACGTCTACAAACA 59.897 50.000 0.00 0.00 44.19 2.83
2349 2554 0.506932 CGCACCACGTCTACAAACAG 59.493 55.000 0.00 0.00 36.87 3.16
2350 2555 1.860676 GCACCACGTCTACAAACAGA 58.139 50.000 0.00 0.00 0.00 3.41
2351 2556 2.206750 GCACCACGTCTACAAACAGAA 58.793 47.619 0.00 0.00 0.00 3.02
2352 2557 2.610374 GCACCACGTCTACAAACAGAAA 59.390 45.455 0.00 0.00 0.00 2.52
2353 2558 3.250040 GCACCACGTCTACAAACAGAAAT 59.750 43.478 0.00 0.00 0.00 2.17
2354 2559 4.449743 GCACCACGTCTACAAACAGAAATA 59.550 41.667 0.00 0.00 0.00 1.40
2355 2560 5.389516 GCACCACGTCTACAAACAGAAATAG 60.390 44.000 0.00 0.00 0.00 1.73
2356 2561 5.924254 CACCACGTCTACAAACAGAAATAGA 59.076 40.000 0.00 0.00 0.00 1.98
2357 2562 6.422701 CACCACGTCTACAAACAGAAATAGAA 59.577 38.462 0.00 0.00 0.00 2.10
2358 2563 6.987992 ACCACGTCTACAAACAGAAATAGAAA 59.012 34.615 0.00 0.00 0.00 2.52
2359 2564 7.496591 ACCACGTCTACAAACAGAAATAGAAAA 59.503 33.333 0.00 0.00 0.00 2.29
2360 2565 7.797123 CCACGTCTACAAACAGAAATAGAAAAC 59.203 37.037 0.00 0.00 0.00 2.43
2361 2566 8.548721 CACGTCTACAAACAGAAATAGAAAACT 58.451 33.333 0.00 0.00 0.00 2.66
2362 2567 8.548721 ACGTCTACAAACAGAAATAGAAAACTG 58.451 33.333 0.00 0.00 36.58 3.16
2363 2568 8.761497 CGTCTACAAACAGAAATAGAAAACTGA 58.239 33.333 0.00 0.00 34.88 3.41
2370 2575 9.803315 AAACAGAAATAGAAAACTGAGAAAACC 57.197 29.630 0.00 0.00 34.88 3.27
2371 2576 8.519799 ACAGAAATAGAAAACTGAGAAAACCA 57.480 30.769 0.00 0.00 34.88 3.67
2372 2577 8.966868 ACAGAAATAGAAAACTGAGAAAACCAA 58.033 29.630 0.00 0.00 34.88 3.67
2373 2578 9.801873 CAGAAATAGAAAACTGAGAAAACCAAA 57.198 29.630 0.00 0.00 32.90 3.28
2375 2580 8.648557 AAATAGAAAACTGAGAAAACCAAAGC 57.351 30.769 0.00 0.00 0.00 3.51
2376 2581 5.921962 AGAAAACTGAGAAAACCAAAGCT 57.078 34.783 0.00 0.00 0.00 3.74
2377 2582 6.286240 AGAAAACTGAGAAAACCAAAGCTT 57.714 33.333 0.00 0.00 0.00 3.74
2378 2583 6.701340 AGAAAACTGAGAAAACCAAAGCTTT 58.299 32.000 5.69 5.69 0.00 3.51
2379 2584 7.836842 AGAAAACTGAGAAAACCAAAGCTTTA 58.163 30.769 12.25 0.00 0.00 1.85
2380 2585 7.976175 AGAAAACTGAGAAAACCAAAGCTTTAG 59.024 33.333 12.25 7.30 0.00 1.85
2381 2586 6.775594 AACTGAGAAAACCAAAGCTTTAGT 57.224 33.333 12.25 8.07 0.00 2.24
2382 2587 6.775594 ACTGAGAAAACCAAAGCTTTAGTT 57.224 33.333 15.98 15.98 0.00 2.24
2383 2588 6.564328 ACTGAGAAAACCAAAGCTTTAGTTG 58.436 36.000 21.18 11.42 0.00 3.16
2384 2589 6.377146 ACTGAGAAAACCAAAGCTTTAGTTGA 59.623 34.615 21.18 5.40 0.00 3.18
2385 2590 7.068716 ACTGAGAAAACCAAAGCTTTAGTTGAT 59.931 33.333 21.18 14.23 0.00 2.57
2386 2591 8.458573 TGAGAAAACCAAAGCTTTAGTTGATA 57.541 30.769 21.18 6.47 0.00 2.15
2387 2592 8.349983 TGAGAAAACCAAAGCTTTAGTTGATAC 58.650 33.333 21.18 14.17 0.00 2.24
2388 2593 8.465273 AGAAAACCAAAGCTTTAGTTGATACT 57.535 30.769 21.18 14.87 38.44 2.12
2389 2594 8.914011 AGAAAACCAAAGCTTTAGTTGATACTT 58.086 29.630 21.18 12.48 35.78 2.24
2390 2595 9.181805 GAAAACCAAAGCTTTAGTTGATACTTC 57.818 33.333 21.18 16.37 35.78 3.01
2391 2596 7.817418 AACCAAAGCTTTAGTTGATACTTCA 57.183 32.000 20.07 0.00 35.78 3.02
2392 2597 8.409358 AACCAAAGCTTTAGTTGATACTTCAT 57.591 30.769 20.07 0.00 35.78 2.57
2393 2598 7.820648 ACCAAAGCTTTAGTTGATACTTCATG 58.179 34.615 12.25 0.00 35.78 3.07
2394 2599 7.448469 ACCAAAGCTTTAGTTGATACTTCATGT 59.552 33.333 12.25 0.00 35.78 3.21
2395 2600 7.965107 CCAAAGCTTTAGTTGATACTTCATGTC 59.035 37.037 12.25 0.00 35.78 3.06
2396 2601 8.725148 CAAAGCTTTAGTTGATACTTCATGTCT 58.275 33.333 12.25 0.00 35.78 3.41
2397 2602 8.854614 AAGCTTTAGTTGATACTTCATGTCTT 57.145 30.769 0.00 0.00 35.78 3.01
2398 2603 8.485976 AGCTTTAGTTGATACTTCATGTCTTC 57.514 34.615 0.00 0.00 35.78 2.87
2399 2604 8.317679 AGCTTTAGTTGATACTTCATGTCTTCT 58.682 33.333 0.00 0.00 35.78 2.85
2400 2605 9.587772 GCTTTAGTTGATACTTCATGTCTTCTA 57.412 33.333 0.00 0.00 35.78 2.10
2405 2610 8.079203 AGTTGATACTTCATGTCTTCTATAGCG 58.921 37.037 0.00 0.00 0.00 4.26
2406 2611 7.745620 TGATACTTCATGTCTTCTATAGCGA 57.254 36.000 0.00 0.00 0.00 4.93
2407 2612 7.585867 TGATACTTCATGTCTTCTATAGCGAC 58.414 38.462 12.45 12.45 0.00 5.19
2408 2613 5.189659 ACTTCATGTCTTCTATAGCGACC 57.810 43.478 15.18 3.62 0.00 4.79
2409 2614 3.898517 TCATGTCTTCTATAGCGACCG 57.101 47.619 15.18 9.31 0.00 4.79
2410 2615 2.031069 TCATGTCTTCTATAGCGACCGC 60.031 50.000 6.25 6.25 42.33 5.68
2411 2616 1.385528 TGTCTTCTATAGCGACCGCA 58.614 50.000 16.97 3.29 44.88 5.69
2412 2617 1.954382 TGTCTTCTATAGCGACCGCAT 59.046 47.619 16.97 10.14 44.88 4.73
2413 2618 3.143728 TGTCTTCTATAGCGACCGCATA 58.856 45.455 16.97 10.68 44.88 3.14
2414 2619 3.058432 TGTCTTCTATAGCGACCGCATAC 60.058 47.826 16.97 4.17 44.88 2.39
2415 2620 2.159037 TCTTCTATAGCGACCGCATACG 59.841 50.000 16.97 2.74 44.88 3.06
2421 2626 3.394874 CGACCGCATACGCCGATG 61.395 66.667 0.00 0.00 36.41 3.84
2422 2627 2.027024 GACCGCATACGCCGATGA 59.973 61.111 0.00 0.00 38.22 2.92
2423 2628 1.590525 GACCGCATACGCCGATGAA 60.591 57.895 0.00 0.00 38.22 2.57
2424 2629 0.944311 GACCGCATACGCCGATGAAT 60.944 55.000 0.00 0.00 38.22 2.57
2425 2630 0.944311 ACCGCATACGCCGATGAATC 60.944 55.000 0.00 0.00 38.22 2.52
2426 2631 1.626654 CCGCATACGCCGATGAATCC 61.627 60.000 0.00 0.00 38.22 3.01
2427 2632 0.943835 CGCATACGCCGATGAATCCA 60.944 55.000 0.00 0.00 33.11 3.41
2428 2633 0.512952 GCATACGCCGATGAATCCAC 59.487 55.000 0.00 0.00 0.00 4.02
2429 2634 1.148310 CATACGCCGATGAATCCACC 58.852 55.000 0.00 0.00 0.00 4.61
2430 2635 1.048601 ATACGCCGATGAATCCACCT 58.951 50.000 0.00 0.00 0.00 4.00
2431 2636 0.828022 TACGCCGATGAATCCACCTT 59.172 50.000 0.00 0.00 0.00 3.50
2432 2637 0.744414 ACGCCGATGAATCCACCTTG 60.744 55.000 0.00 0.00 0.00 3.61
2433 2638 1.729881 GCCGATGAATCCACCTTGC 59.270 57.895 0.00 0.00 0.00 4.01
2434 2639 2.016961 CCGATGAATCCACCTTGCG 58.983 57.895 0.00 0.00 0.00 4.85
2435 2640 1.353103 CGATGAATCCACCTTGCGC 59.647 57.895 0.00 0.00 0.00 6.09
2436 2641 1.368345 CGATGAATCCACCTTGCGCA 61.368 55.000 5.66 5.66 0.00 6.09
2437 2642 0.099436 GATGAATCCACCTTGCGCAC 59.901 55.000 11.12 0.00 0.00 5.34
2438 2643 0.608856 ATGAATCCACCTTGCGCACA 60.609 50.000 11.12 0.71 0.00 4.57
2439 2644 0.608856 TGAATCCACCTTGCGCACAT 60.609 50.000 11.12 0.00 0.00 3.21
2440 2645 0.099436 GAATCCACCTTGCGCACATC 59.901 55.000 11.12 0.00 0.00 3.06
2441 2646 0.322816 AATCCACCTTGCGCACATCT 60.323 50.000 11.12 0.00 0.00 2.90
2442 2647 0.541392 ATCCACCTTGCGCACATCTA 59.459 50.000 11.12 0.00 0.00 1.98
2443 2648 0.108186 TCCACCTTGCGCACATCTAG 60.108 55.000 11.12 3.82 0.00 2.43
2444 2649 1.091771 CCACCTTGCGCACATCTAGG 61.092 60.000 20.86 20.86 33.59 3.02
2445 2650 1.091771 CACCTTGCGCACATCTAGGG 61.092 60.000 24.87 12.73 32.01 3.53
2446 2651 2.182842 CCTTGCGCACATCTAGGGC 61.183 63.158 11.12 0.00 45.63 5.19
2451 2656 4.445699 GCACATCTAGGGCTTCGG 57.554 61.111 0.00 0.00 45.63 4.30
2452 2657 1.889573 GCACATCTAGGGCTTCGGC 60.890 63.158 0.00 0.00 45.63 5.54
2462 2667 2.347490 GCTTCGGCCAGGAGTTGA 59.653 61.111 2.24 0.00 34.32 3.18
2463 2668 1.302511 GCTTCGGCCAGGAGTTGAA 60.303 57.895 2.24 0.00 34.32 2.69
2464 2669 0.889186 GCTTCGGCCAGGAGTTGAAA 60.889 55.000 2.24 0.00 34.32 2.69
2465 2670 1.604604 CTTCGGCCAGGAGTTGAAAA 58.395 50.000 2.24 0.00 0.00 2.29
2466 2671 2.162681 CTTCGGCCAGGAGTTGAAAAT 58.837 47.619 2.24 0.00 0.00 1.82
2467 2672 1.821216 TCGGCCAGGAGTTGAAAATC 58.179 50.000 2.24 0.00 0.00 2.17
2468 2673 0.811281 CGGCCAGGAGTTGAAAATCC 59.189 55.000 2.24 1.26 35.71 3.01
2469 2674 0.811281 GGCCAGGAGTTGAAAATCCG 59.189 55.000 0.00 0.37 40.73 4.18
2470 2675 1.534729 GCCAGGAGTTGAAAATCCGT 58.465 50.000 4.03 0.00 40.73 4.69
2471 2676 1.468914 GCCAGGAGTTGAAAATCCGTC 59.531 52.381 4.03 0.00 40.73 4.79
2472 2677 2.876079 GCCAGGAGTTGAAAATCCGTCT 60.876 50.000 4.03 0.00 40.73 4.18
2473 2678 3.412386 CCAGGAGTTGAAAATCCGTCTT 58.588 45.455 4.03 0.00 40.73 3.01
2474 2679 3.189287 CCAGGAGTTGAAAATCCGTCTTG 59.811 47.826 4.03 0.00 40.73 3.02
2475 2680 4.065088 CAGGAGTTGAAAATCCGTCTTGA 58.935 43.478 4.03 0.00 40.73 3.02
2476 2681 4.515191 CAGGAGTTGAAAATCCGTCTTGAA 59.485 41.667 4.03 0.00 40.73 2.69
2477 2682 4.515567 AGGAGTTGAAAATCCGTCTTGAAC 59.484 41.667 4.03 0.00 40.73 3.18
2478 2683 4.515567 GGAGTTGAAAATCCGTCTTGAACT 59.484 41.667 0.00 0.00 0.00 3.01
2479 2684 5.334182 GGAGTTGAAAATCCGTCTTGAACTC 60.334 44.000 0.00 0.00 38.11 3.01
2480 2685 4.515567 AGTTGAAAATCCGTCTTGAACTCC 59.484 41.667 0.00 0.00 0.00 3.85
2481 2686 4.079980 TGAAAATCCGTCTTGAACTCCA 57.920 40.909 0.00 0.00 0.00 3.86
2482 2687 3.813166 TGAAAATCCGTCTTGAACTCCAC 59.187 43.478 0.00 0.00 0.00 4.02
2483 2688 2.474410 AATCCGTCTTGAACTCCACC 57.526 50.000 0.00 0.00 0.00 4.61
2484 2689 0.613777 ATCCGTCTTGAACTCCACCC 59.386 55.000 0.00 0.00 0.00 4.61
2485 2690 0.471211 TCCGTCTTGAACTCCACCCT 60.471 55.000 0.00 0.00 0.00 4.34
2486 2691 0.320771 CCGTCTTGAACTCCACCCTG 60.321 60.000 0.00 0.00 0.00 4.45
2487 2692 0.679505 CGTCTTGAACTCCACCCTGA 59.320 55.000 0.00 0.00 0.00 3.86
2488 2693 1.276421 CGTCTTGAACTCCACCCTGAT 59.724 52.381 0.00 0.00 0.00 2.90
2489 2694 2.675317 CGTCTTGAACTCCACCCTGATC 60.675 54.545 0.00 0.00 0.00 2.92
2490 2695 2.569404 GTCTTGAACTCCACCCTGATCT 59.431 50.000 0.00 0.00 0.00 2.75
2491 2696 3.008485 GTCTTGAACTCCACCCTGATCTT 59.992 47.826 0.00 0.00 0.00 2.40
2492 2697 3.652869 TCTTGAACTCCACCCTGATCTTT 59.347 43.478 0.00 0.00 0.00 2.52
2493 2698 3.703001 TGAACTCCACCCTGATCTTTC 57.297 47.619 0.00 0.00 0.00 2.62
2494 2699 2.305927 TGAACTCCACCCTGATCTTTCC 59.694 50.000 0.00 0.00 0.00 3.13
2495 2700 2.044793 ACTCCACCCTGATCTTTCCA 57.955 50.000 0.00 0.00 0.00 3.53
2496 2701 2.348472 ACTCCACCCTGATCTTTCCAA 58.652 47.619 0.00 0.00 0.00 3.53
2497 2702 2.307098 ACTCCACCCTGATCTTTCCAAG 59.693 50.000 0.00 0.00 0.00 3.61
2498 2703 2.573462 CTCCACCCTGATCTTTCCAAGA 59.427 50.000 0.00 0.00 42.69 3.02
2507 2712 2.865119 TCTTTCCAAGATCAGCTGCA 57.135 45.000 9.47 0.00 31.20 4.41
2508 2713 2.708051 TCTTTCCAAGATCAGCTGCAG 58.292 47.619 10.11 10.11 31.20 4.41
2509 2714 2.039480 TCTTTCCAAGATCAGCTGCAGT 59.961 45.455 16.64 0.00 31.20 4.40
2510 2715 1.817357 TTCCAAGATCAGCTGCAGTG 58.183 50.000 16.64 12.33 0.00 3.66
2511 2716 0.035725 TCCAAGATCAGCTGCAGTGG 60.036 55.000 16.64 13.02 0.00 4.00
2512 2717 0.322277 CCAAGATCAGCTGCAGTGGT 60.322 55.000 16.64 8.67 0.00 4.16
2513 2718 0.803117 CAAGATCAGCTGCAGTGGTG 59.197 55.000 16.64 10.79 36.85 4.17
2514 2719 0.689055 AAGATCAGCTGCAGTGGTGA 59.311 50.000 16.64 15.74 46.39 4.02
2517 2722 2.936928 TCAGCTGCAGTGGTGATTG 58.063 52.632 16.64 3.35 39.20 2.67
2518 2723 1.211969 CAGCTGCAGTGGTGATTGC 59.788 57.895 16.64 0.00 40.67 3.56
2522 2727 2.268999 TGCAGTGGTGATTGCATGG 58.731 52.632 0.00 0.00 44.72 3.66
2523 2728 1.252215 TGCAGTGGTGATTGCATGGG 61.252 55.000 0.00 0.00 44.72 4.00
2524 2729 0.966875 GCAGTGGTGATTGCATGGGA 60.967 55.000 0.00 0.00 40.02 4.37
2525 2730 0.813184 CAGTGGTGATTGCATGGGAC 59.187 55.000 0.00 0.00 0.00 4.46
2537 2742 4.453454 TGGGACATAGCGACCACT 57.547 55.556 0.00 0.00 0.00 4.00
2538 2743 2.678786 TGGGACATAGCGACCACTT 58.321 52.632 0.00 0.00 0.00 3.16
2539 2744 0.535335 TGGGACATAGCGACCACTTC 59.465 55.000 0.00 0.00 0.00 3.01
2540 2745 0.535335 GGGACATAGCGACCACTTCA 59.465 55.000 0.00 0.00 0.00 3.02
2541 2746 1.471676 GGGACATAGCGACCACTTCAG 60.472 57.143 0.00 0.00 0.00 3.02
2542 2747 1.281899 GACATAGCGACCACTTCAGC 58.718 55.000 0.00 0.00 0.00 4.26
2543 2748 0.108138 ACATAGCGACCACTTCAGCC 60.108 55.000 0.00 0.00 0.00 4.85
2544 2749 1.141881 ATAGCGACCACTTCAGCCG 59.858 57.895 0.00 0.00 0.00 5.52
2545 2750 2.907897 ATAGCGACCACTTCAGCCGC 62.908 60.000 0.00 0.00 45.39 6.53
2547 2752 2.664851 CGACCACTTCAGCCGCAA 60.665 61.111 0.00 0.00 0.00 4.85
2548 2753 2.250939 CGACCACTTCAGCCGCAAA 61.251 57.895 0.00 0.00 0.00 3.68
2549 2754 1.576421 GACCACTTCAGCCGCAAAG 59.424 57.895 0.00 0.00 0.00 2.77
2550 2755 1.856265 GACCACTTCAGCCGCAAAGG 61.856 60.000 9.54 0.00 44.97 3.11
2559 2764 2.787249 CCGCAAAGGCATCTGACG 59.213 61.111 0.00 0.00 41.24 4.35
2560 2765 2.034879 CCGCAAAGGCATCTGACGT 61.035 57.895 0.00 0.00 41.24 4.34
2561 2766 1.133253 CGCAAAGGCATCTGACGTG 59.867 57.895 0.00 0.00 41.24 4.49
2562 2767 1.568612 CGCAAAGGCATCTGACGTGT 61.569 55.000 0.00 0.00 41.24 4.49
2563 2768 0.110056 GCAAAGGCATCTGACGTGTG 60.110 55.000 0.00 0.00 40.72 3.82
2564 2769 0.110056 CAAAGGCATCTGACGTGTGC 60.110 55.000 0.00 0.00 38.12 4.57
2565 2770 0.250467 AAAGGCATCTGACGTGTGCT 60.250 50.000 0.00 0.00 38.83 4.40
2566 2771 0.671781 AAGGCATCTGACGTGTGCTC 60.672 55.000 0.00 0.00 38.83 4.26
2567 2772 1.079543 GGCATCTGACGTGTGCTCT 60.080 57.895 0.00 0.00 38.83 4.09
2568 2773 1.357258 GGCATCTGACGTGTGCTCTG 61.357 60.000 0.00 0.00 38.83 3.35
2569 2774 1.357258 GCATCTGACGTGTGCTCTGG 61.357 60.000 0.00 0.00 36.02 3.86
2570 2775 0.037882 CATCTGACGTGTGCTCTGGT 60.038 55.000 0.00 0.00 0.00 4.00
2571 2776 0.244994 ATCTGACGTGTGCTCTGGTC 59.755 55.000 0.00 3.77 0.00 4.02
2572 2777 1.730902 CTGACGTGTGCTCTGGTCG 60.731 63.158 0.00 0.00 32.17 4.79
2573 2778 2.335369 GACGTGTGCTCTGGTCGT 59.665 61.111 0.00 0.00 37.45 4.34
2574 2779 1.729838 GACGTGTGCTCTGGTCGTC 60.730 63.158 0.00 0.00 42.48 4.20
2575 2780 2.430921 CGTGTGCTCTGGTCGTCC 60.431 66.667 0.00 0.00 0.00 4.79
2576 2781 2.048127 GTGTGCTCTGGTCGTCCC 60.048 66.667 0.00 0.00 0.00 4.46
2577 2782 3.680786 TGTGCTCTGGTCGTCCCG 61.681 66.667 0.00 0.00 35.15 5.14
2598 2803 2.674033 TGGCATGCACCAGTGAGC 60.674 61.111 21.36 0.00 33.75 4.26
2599 2804 3.446570 GGCATGCACCAGTGAGCC 61.447 66.667 21.36 11.72 37.38 4.70
2600 2805 2.674033 GCATGCACCAGTGAGCCA 60.674 61.111 14.21 0.00 0.00 4.75
2601 2806 2.050350 GCATGCACCAGTGAGCCAT 61.050 57.895 14.21 0.00 0.00 4.40
2602 2807 2.001361 GCATGCACCAGTGAGCCATC 62.001 60.000 14.21 0.00 0.00 3.51
2603 2808 1.450848 ATGCACCAGTGAGCCATCG 60.451 57.895 0.99 0.00 0.00 3.84
2604 2809 2.821366 GCACCAGTGAGCCATCGG 60.821 66.667 0.99 0.00 0.00 4.18
2615 2820 3.402681 CCATCGGCCACCCTCACT 61.403 66.667 2.24 0.00 0.00 3.41
2616 2821 2.124983 CATCGGCCACCCTCACTG 60.125 66.667 2.24 0.00 0.00 3.66
2617 2822 4.101448 ATCGGCCACCCTCACTGC 62.101 66.667 2.24 0.00 0.00 4.40
2619 2824 3.390521 CGGCCACCCTCACTGCTA 61.391 66.667 2.24 0.00 0.00 3.49
2620 2825 2.269241 GGCCACCCTCACTGCTAC 59.731 66.667 0.00 0.00 0.00 3.58
2621 2826 2.125512 GCCACCCTCACTGCTACG 60.126 66.667 0.00 0.00 0.00 3.51
2622 2827 2.125512 CCACCCTCACTGCTACGC 60.126 66.667 0.00 0.00 0.00 4.42
2623 2828 2.125512 CACCCTCACTGCTACGCC 60.126 66.667 0.00 0.00 0.00 5.68
2624 2829 3.391382 ACCCTCACTGCTACGCCC 61.391 66.667 0.00 0.00 0.00 6.13
2625 2830 4.162690 CCCTCACTGCTACGCCCC 62.163 72.222 0.00 0.00 0.00 5.80
2626 2831 3.390521 CCTCACTGCTACGCCCCA 61.391 66.667 0.00 0.00 0.00 4.96
2627 2832 2.735772 CCTCACTGCTACGCCCCAT 61.736 63.158 0.00 0.00 0.00 4.00
2628 2833 1.227380 CTCACTGCTACGCCCCATC 60.227 63.158 0.00 0.00 0.00 3.51
2629 2834 2.203070 CACTGCTACGCCCCATCC 60.203 66.667 0.00 0.00 0.00 3.51
2630 2835 2.365635 ACTGCTACGCCCCATCCT 60.366 61.111 0.00 0.00 0.00 3.24
2631 2836 2.109799 CTGCTACGCCCCATCCTG 59.890 66.667 0.00 0.00 0.00 3.86
2632 2837 4.175337 TGCTACGCCCCATCCTGC 62.175 66.667 0.00 0.00 0.00 4.85
2633 2838 4.175337 GCTACGCCCCATCCTGCA 62.175 66.667 0.00 0.00 0.00 4.41
2634 2839 2.831770 CTACGCCCCATCCTGCAT 59.168 61.111 0.00 0.00 0.00 3.96
2635 2840 1.598962 CTACGCCCCATCCTGCATG 60.599 63.158 0.00 0.00 0.00 4.06
2636 2841 3.772853 TACGCCCCATCCTGCATGC 62.773 63.158 11.82 11.82 0.00 4.06
2637 2842 4.889112 CGCCCCATCCTGCATGCT 62.889 66.667 20.33 0.00 0.00 3.79
2638 2843 3.224324 GCCCCATCCTGCATGCTG 61.224 66.667 20.33 18.55 0.00 4.41
2639 2844 3.224324 CCCCATCCTGCATGCTGC 61.224 66.667 20.33 0.00 45.29 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.891580 GCAATCGTGAGGTATAGGAGGA 59.108 50.000 0.00 0.00 0.00 3.71
1 2 2.894126 AGCAATCGTGAGGTATAGGAGG 59.106 50.000 0.00 0.00 0.00 4.30
2 3 4.592485 AAGCAATCGTGAGGTATAGGAG 57.408 45.455 0.00 0.00 0.00 3.69
3 4 5.773176 TGATAAGCAATCGTGAGGTATAGGA 59.227 40.000 0.00 0.00 37.42 2.94
4 5 6.025749 TGATAAGCAATCGTGAGGTATAGG 57.974 41.667 0.00 0.00 37.42 2.57
5 6 5.574830 GCTGATAAGCAATCGTGAGGTATAG 59.425 44.000 0.00 0.00 37.42 1.31
6 7 5.470368 GCTGATAAGCAATCGTGAGGTATA 58.530 41.667 0.00 0.00 37.42 1.47
7 8 4.310769 GCTGATAAGCAATCGTGAGGTAT 58.689 43.478 0.00 0.00 37.42 2.73
8 9 3.717707 GCTGATAAGCAATCGTGAGGTA 58.282 45.455 0.00 0.00 37.42 3.08
9 10 2.555199 GCTGATAAGCAATCGTGAGGT 58.445 47.619 0.00 0.00 37.42 3.85
14 15 2.309528 TTCCGCTGATAAGCAATCGT 57.690 45.000 2.16 0.00 37.42 3.73
35 36 1.471119 ATCGAGAGGTAAAGGACGCA 58.529 50.000 0.00 0.00 0.00 5.24
39 40 5.362717 TGATAAGCAATCGAGAGGTAAAGGA 59.637 40.000 0.00 0.00 37.42 3.36
87 88 4.142752 CGTCGTACTCAAGACTTACCATCA 60.143 45.833 0.00 0.00 35.38 3.07
96 97 0.243095 AAGGGCGTCGTACTCAAGAC 59.757 55.000 0.00 0.00 0.00 3.01
106 107 1.265635 TGAAACATTTCAAGGGCGTCG 59.734 47.619 4.56 0.00 43.62 5.12
129 130 0.039165 CCTTTTTCAAGAGGCACCGC 60.039 55.000 0.00 0.00 30.57 5.68
162 163 3.935872 CGGGTGTGTGTGTGTGCG 61.936 66.667 0.00 0.00 0.00 5.34
164 165 2.521771 CGACGGGTGTGTGTGTGTG 61.522 63.158 0.00 0.00 0.00 3.82
254 257 1.375908 GCAGTGGCTGTCGATGGAA 60.376 57.895 0.00 0.00 36.96 3.53
320 323 1.444895 CAGCCGCAAAGCCATGAAC 60.445 57.895 0.00 0.00 0.00 3.18
352 355 4.444838 CCGTTGCGTGATCGGGGA 62.445 66.667 0.00 0.00 40.49 4.81
375 378 1.368850 GACGCGTCAGGTTTTGTGC 60.369 57.895 33.09 2.01 0.00 4.57
378 381 0.661020 AAAGGACGCGTCAGGTTTTG 59.339 50.000 37.26 0.00 0.00 2.44
485 491 1.817941 GTCAGTTGTGCGTGTGGGT 60.818 57.895 0.00 0.00 0.00 4.51
537 546 4.470334 AAATAAGCCGTGCAAATCCATT 57.530 36.364 0.00 0.00 0.00 3.16
538 547 4.470334 AAAATAAGCCGTGCAAATCCAT 57.530 36.364 0.00 0.00 0.00 3.41
550 559 8.281212 TCCAACTGATCTTCTAAAAATAAGCC 57.719 34.615 0.00 0.00 0.00 4.35
567 576 4.782691 TCTATCCAACTCCAATCCAACTGA 59.217 41.667 0.00 0.00 0.00 3.41
736 745 3.726517 CCGTCGACGTGTACCGGT 61.727 66.667 33.49 13.98 42.24 5.28
737 746 4.465512 CCCGTCGACGTGTACCGG 62.466 72.222 33.49 23.00 42.24 5.28
739 748 4.783734 GGCCCGTCGACGTGTACC 62.784 72.222 33.49 24.21 37.74 3.34
989 1023 2.148768 GCATAAATAGGGGCCACGTAC 58.851 52.381 4.39 0.00 0.00 3.67
1134 1194 0.670854 GACCTCACGTGGCTTCTTCC 60.671 60.000 17.00 0.00 0.00 3.46
1482 1566 9.634163 GTCACCAAAGAAAAAGTAAAAGAAAGA 57.366 29.630 0.00 0.00 0.00 2.52
1483 1567 8.869897 GGTCACCAAAGAAAAAGTAAAAGAAAG 58.130 33.333 0.00 0.00 0.00 2.62
1484 1568 7.820386 GGGTCACCAAAGAAAAAGTAAAAGAAA 59.180 33.333 0.00 0.00 36.50 2.52
1485 1569 7.179516 AGGGTCACCAAAGAAAAAGTAAAAGAA 59.820 33.333 0.00 0.00 40.13 2.52
1486 1570 6.666113 AGGGTCACCAAAGAAAAAGTAAAAGA 59.334 34.615 0.00 0.00 40.13 2.52
1492 1576 2.430694 GCAGGGTCACCAAAGAAAAAGT 59.569 45.455 0.00 0.00 40.13 2.66
1519 1603 0.548031 GATCTTCTGCCCCATCCACA 59.452 55.000 0.00 0.00 0.00 4.17
1534 1618 1.550327 TCACCAGCAGAAGACGATCT 58.450 50.000 0.00 0.00 0.00 2.75
1539 1623 2.911484 CCCTAATCACCAGCAGAAGAC 58.089 52.381 0.00 0.00 0.00 3.01
1564 1648 8.511604 AAGTATTTACAGAACCATCATGGAAG 57.488 34.615 11.90 0.00 40.96 3.46
1651 1748 0.031994 ACGCAGCACCATCCAAAAAC 59.968 50.000 0.00 0.00 0.00 2.43
1680 1777 8.905702 CAATCGCAGGCATAAATTAAATAGAAC 58.094 33.333 0.00 0.00 0.00 3.01
1688 1785 5.122519 TCTCACAATCGCAGGCATAAATTA 58.877 37.500 0.00 0.00 0.00 1.40
1689 1786 3.947196 TCTCACAATCGCAGGCATAAATT 59.053 39.130 0.00 0.00 0.00 1.82
1710 1810 8.093927 ACCTAAAGCTCTATGCATAATCTCTTC 58.906 37.037 8.00 0.00 45.94 2.87
1732 1832 5.265191 AGCACAGAACTCTGATCTAACCTA 58.735 41.667 13.61 0.00 46.59 3.08
1733 1833 4.093011 AGCACAGAACTCTGATCTAACCT 58.907 43.478 13.61 0.00 46.59 3.50
1734 1834 4.464069 AGCACAGAACTCTGATCTAACC 57.536 45.455 13.61 0.00 46.59 2.85
1735 1835 5.982516 CCATAGCACAGAACTCTGATCTAAC 59.017 44.000 13.61 0.00 46.59 2.34
1736 1836 5.069648 CCCATAGCACAGAACTCTGATCTAA 59.930 44.000 13.61 0.00 46.59 2.10
1773 1878 9.107177 AGTTGACATCTTCAAGCAATATAAGAG 57.893 33.333 0.00 0.00 45.23 2.85
1780 1891 7.828223 AGATAAGAGTTGACATCTTCAAGCAAT 59.172 33.333 0.00 0.00 45.23 3.56
1785 1896 9.730705 ATTTCAGATAAGAGTTGACATCTTCAA 57.269 29.630 0.00 0.00 42.26 2.69
1803 1914 8.772250 TCAGGGAAAAGATGTACTATTTCAGAT 58.228 33.333 12.11 0.00 34.31 2.90
1804 1915 8.146053 TCAGGGAAAAGATGTACTATTTCAGA 57.854 34.615 12.11 6.77 34.31 3.27
1805 1916 8.792830 TTCAGGGAAAAGATGTACTATTTCAG 57.207 34.615 12.11 5.32 34.31 3.02
1806 1917 8.602424 TCTTCAGGGAAAAGATGTACTATTTCA 58.398 33.333 12.11 0.00 34.31 2.69
1807 1918 9.620259 ATCTTCAGGGAAAAGATGTACTATTTC 57.380 33.333 0.00 0.20 40.94 2.17
1817 1928 5.885465 AGTTGACATCTTCAGGGAAAAGAT 58.115 37.500 0.00 0.00 42.74 2.40
1818 1929 5.072329 AGAGTTGACATCTTCAGGGAAAAGA 59.928 40.000 0.00 0.00 37.18 2.52
1819 1930 5.312079 AGAGTTGACATCTTCAGGGAAAAG 58.688 41.667 0.00 0.00 34.94 2.27
1820 1931 5.310409 AGAGTTGACATCTTCAGGGAAAA 57.690 39.130 0.00 0.00 34.94 2.29
1821 1932 4.982241 AGAGTTGACATCTTCAGGGAAA 57.018 40.909 0.00 0.00 34.94 3.13
1822 1933 4.982241 AAGAGTTGACATCTTCAGGGAA 57.018 40.909 0.00 0.00 34.94 3.97
1823 1934 5.960811 AGATAAGAGTTGACATCTTCAGGGA 59.039 40.000 0.00 0.00 38.05 4.20
1824 1935 6.047870 CAGATAAGAGTTGACATCTTCAGGG 58.952 44.000 0.00 0.00 38.05 4.45
1825 1936 6.871844 TCAGATAAGAGTTGACATCTTCAGG 58.128 40.000 0.00 0.00 38.05 3.86
1826 1937 8.034215 AGTTCAGATAAGAGTTGACATCTTCAG 58.966 37.037 0.00 0.00 38.05 3.02
1827 1938 7.901029 AGTTCAGATAAGAGTTGACATCTTCA 58.099 34.615 0.00 0.00 38.05 3.02
1869 2054 1.202110 GCAATCTCGTAACTCGACGGA 60.202 52.381 0.00 0.00 44.01 4.69
1870 2055 1.189403 GCAATCTCGTAACTCGACGG 58.811 55.000 0.00 0.00 44.01 4.79
1871 2056 1.840741 CAGCAATCTCGTAACTCGACG 59.159 52.381 0.00 0.00 44.01 5.12
1872 2057 3.132629 TCAGCAATCTCGTAACTCGAC 57.867 47.619 0.00 0.00 44.01 4.20
1873 2058 4.371855 AATCAGCAATCTCGTAACTCGA 57.628 40.909 0.00 0.00 46.83 4.04
1874 2059 4.441415 GGTAATCAGCAATCTCGTAACTCG 59.559 45.833 0.00 0.00 41.41 4.18
1875 2060 4.745620 GGGTAATCAGCAATCTCGTAACTC 59.254 45.833 0.00 0.00 0.00 3.01
1890 2075 3.618997 GCTGGTTCTTCTTCGGGTAATCA 60.619 47.826 0.00 0.00 0.00 2.57
1908 2093 2.352651 CCGTCATGTTGTCATTAGCTGG 59.647 50.000 0.00 0.00 31.15 4.85
1910 2095 2.236146 TCCCGTCATGTTGTCATTAGCT 59.764 45.455 0.00 0.00 31.15 3.32
1912 2097 6.049149 ACTAATCCCGTCATGTTGTCATTAG 58.951 40.000 11.56 11.56 31.15 1.73
1916 2101 3.973206 ACTAATCCCGTCATGTTGTCA 57.027 42.857 0.00 0.00 0.00 3.58
1919 2104 7.780008 TTATTGTACTAATCCCGTCATGTTG 57.220 36.000 0.00 0.00 0.00 3.33
1972 2157 4.724399 TGAATGCACTCCCTCTGTAAAAA 58.276 39.130 0.00 0.00 0.00 1.94
1973 2158 4.365514 TGAATGCACTCCCTCTGTAAAA 57.634 40.909 0.00 0.00 0.00 1.52
1974 2159 4.574674 ATGAATGCACTCCCTCTGTAAA 57.425 40.909 0.00 0.00 0.00 2.01
1975 2160 4.264253 CAATGAATGCACTCCCTCTGTAA 58.736 43.478 0.00 0.00 0.00 2.41
1976 2161 3.877559 CAATGAATGCACTCCCTCTGTA 58.122 45.455 0.00 0.00 0.00 2.74
1977 2162 2.719739 CAATGAATGCACTCCCTCTGT 58.280 47.619 0.00 0.00 0.00 3.41
1999 2184 3.263489 ACTGCAATCATCAGTCTCTGG 57.737 47.619 0.00 0.00 40.47 3.86
2009 2194 9.812347 TTATCCTGGAATTATTACTGCAATCAT 57.188 29.630 0.00 0.00 0.00 2.45
2010 2195 9.066892 GTTATCCTGGAATTATTACTGCAATCA 57.933 33.333 0.00 0.00 0.00 2.57
2011 2196 9.289782 AGTTATCCTGGAATTATTACTGCAATC 57.710 33.333 0.00 0.00 0.00 2.67
2012 2197 9.646522 AAGTTATCCTGGAATTATTACTGCAAT 57.353 29.630 0.00 0.00 0.00 3.56
2023 2208 6.071320 GGGCATCTTAAGTTATCCTGGAATT 58.929 40.000 0.00 0.00 0.00 2.17
2036 2221 7.684529 AGTATTAGATCAAGGGGCATCTTAAG 58.315 38.462 0.00 0.00 31.57 1.85
2043 2228 5.427157 TGTGTTAGTATTAGATCAAGGGGCA 59.573 40.000 0.00 0.00 0.00 5.36
2044 2229 5.925509 TGTGTTAGTATTAGATCAAGGGGC 58.074 41.667 0.00 0.00 0.00 5.80
2083 2268 7.380333 CGTATATATGAGAGGCGTTTTACACAA 59.620 37.037 0.00 0.00 0.00 3.33
2109 2314 0.109597 CAGCAACCGGAACTGAATGC 60.110 55.000 9.46 6.82 33.10 3.56
2130 2335 5.643379 TCACCATTTCCTCTATTTTGTGC 57.357 39.130 0.00 0.00 0.00 4.57
2185 2390 6.540189 CCACAGTTAAGTAATGAAGCTATGCT 59.460 38.462 0.00 0.00 42.56 3.79
2186 2391 6.316390 ACCACAGTTAAGTAATGAAGCTATGC 59.684 38.462 0.00 0.00 0.00 3.14
2187 2392 7.549134 TCACCACAGTTAAGTAATGAAGCTATG 59.451 37.037 0.00 0.00 0.00 2.23
2188 2393 7.620880 TCACCACAGTTAAGTAATGAAGCTAT 58.379 34.615 0.00 0.00 0.00 2.97
2189 2394 6.999950 TCACCACAGTTAAGTAATGAAGCTA 58.000 36.000 0.00 0.00 0.00 3.32
2190 2395 5.865085 TCACCACAGTTAAGTAATGAAGCT 58.135 37.500 0.00 0.00 0.00 3.74
2191 2396 5.122396 CCTCACCACAGTTAAGTAATGAAGC 59.878 44.000 0.00 0.00 0.00 3.86
2192 2397 5.122396 GCCTCACCACAGTTAAGTAATGAAG 59.878 44.000 0.00 0.00 0.00 3.02
2193 2398 5.001232 GCCTCACCACAGTTAAGTAATGAA 58.999 41.667 0.00 0.00 0.00 2.57
2194 2399 4.041075 TGCCTCACCACAGTTAAGTAATGA 59.959 41.667 0.00 0.00 0.00 2.57
2195 2400 4.323417 TGCCTCACCACAGTTAAGTAATG 58.677 43.478 0.00 0.00 0.00 1.90
2196 2401 4.634012 TGCCTCACCACAGTTAAGTAAT 57.366 40.909 0.00 0.00 0.00 1.89
2197 2402 4.634012 ATGCCTCACCACAGTTAAGTAA 57.366 40.909 0.00 0.00 0.00 2.24
2198 2403 5.451381 CGATATGCCTCACCACAGTTAAGTA 60.451 44.000 0.00 0.00 0.00 2.24
2199 2404 4.680708 CGATATGCCTCACCACAGTTAAGT 60.681 45.833 0.00 0.00 0.00 2.24
2200 2405 3.804325 CGATATGCCTCACCACAGTTAAG 59.196 47.826 0.00 0.00 0.00 1.85
2201 2406 3.792401 CGATATGCCTCACCACAGTTAA 58.208 45.455 0.00 0.00 0.00 2.01
2202 2407 2.483013 GCGATATGCCTCACCACAGTTA 60.483 50.000 0.00 0.00 37.76 2.24
2203 2408 1.743772 GCGATATGCCTCACCACAGTT 60.744 52.381 0.00 0.00 37.76 3.16
2204 2409 0.179073 GCGATATGCCTCACCACAGT 60.179 55.000 0.00 0.00 37.76 3.55
2205 2410 2.609825 GCGATATGCCTCACCACAG 58.390 57.895 0.00 0.00 37.76 3.66
2206 2411 4.855105 GCGATATGCCTCACCACA 57.145 55.556 0.00 0.00 37.76 4.17
2215 2420 1.024271 ATGTGTTGTGGGCGATATGC 58.976 50.000 0.00 0.00 45.38 3.14
2216 2421 2.682352 TGAATGTGTTGTGGGCGATATG 59.318 45.455 0.00 0.00 0.00 1.78
2217 2422 2.682856 GTGAATGTGTTGTGGGCGATAT 59.317 45.455 0.00 0.00 0.00 1.63
2218 2423 2.080693 GTGAATGTGTTGTGGGCGATA 58.919 47.619 0.00 0.00 0.00 2.92
2219 2424 0.881118 GTGAATGTGTTGTGGGCGAT 59.119 50.000 0.00 0.00 0.00 4.58
2220 2425 1.169661 GGTGAATGTGTTGTGGGCGA 61.170 55.000 0.00 0.00 0.00 5.54
2221 2426 1.285641 GGTGAATGTGTTGTGGGCG 59.714 57.895 0.00 0.00 0.00 6.13
2222 2427 1.112315 TGGGTGAATGTGTTGTGGGC 61.112 55.000 0.00 0.00 0.00 5.36
2223 2428 0.673437 GTGGGTGAATGTGTTGTGGG 59.327 55.000 0.00 0.00 0.00 4.61
2224 2429 1.608590 GAGTGGGTGAATGTGTTGTGG 59.391 52.381 0.00 0.00 0.00 4.17
2225 2430 1.264020 CGAGTGGGTGAATGTGTTGTG 59.736 52.381 0.00 0.00 0.00 3.33
2226 2431 1.593196 CGAGTGGGTGAATGTGTTGT 58.407 50.000 0.00 0.00 0.00 3.32
2227 2432 0.874390 CCGAGTGGGTGAATGTGTTG 59.126 55.000 0.00 0.00 0.00 3.33
2228 2433 3.322514 CCGAGTGGGTGAATGTGTT 57.677 52.632 0.00 0.00 0.00 3.32
2239 2444 1.144057 GATGTACCAGCCCGAGTGG 59.856 63.158 0.00 0.00 41.30 4.00
2240 2445 1.226974 CGATGTACCAGCCCGAGTG 60.227 63.158 0.00 0.00 0.00 3.51
2241 2446 2.423898 CCGATGTACCAGCCCGAGT 61.424 63.158 0.00 0.00 0.00 4.18
2242 2447 2.125326 TCCGATGTACCAGCCCGAG 61.125 63.158 0.00 0.00 0.00 4.63
2243 2448 2.043752 TCCGATGTACCAGCCCGA 60.044 61.111 0.00 0.00 0.00 5.14
2244 2449 2.106332 GTCCGATGTACCAGCCCG 59.894 66.667 0.00 0.00 0.00 6.13
2245 2450 1.442148 GAGTCCGATGTACCAGCCC 59.558 63.158 0.00 0.00 0.00 5.19
2246 2451 1.442148 GGAGTCCGATGTACCAGCC 59.558 63.158 0.00 0.00 0.00 4.85
2247 2452 1.327690 TGGGAGTCCGATGTACCAGC 61.328 60.000 2.26 0.00 35.24 4.85
2248 2453 1.191535 TTGGGAGTCCGATGTACCAG 58.808 55.000 2.26 0.00 35.24 4.00
2249 2454 1.276989 GTTTGGGAGTCCGATGTACCA 59.723 52.381 2.26 0.00 35.24 3.25
2250 2455 1.406477 GGTTTGGGAGTCCGATGTACC 60.406 57.143 2.26 4.18 35.24 3.34
2251 2456 1.276989 TGGTTTGGGAGTCCGATGTAC 59.723 52.381 2.26 0.00 35.24 2.90
2252 2457 1.646912 TGGTTTGGGAGTCCGATGTA 58.353 50.000 2.26 0.00 35.24 2.29
2253 2458 0.768622 TTGGTTTGGGAGTCCGATGT 59.231 50.000 2.26 0.00 35.24 3.06
2254 2459 1.539827 GTTTGGTTTGGGAGTCCGATG 59.460 52.381 2.26 0.00 35.24 3.84
2255 2460 1.144093 TGTTTGGTTTGGGAGTCCGAT 59.856 47.619 2.26 0.00 35.24 4.18
2256 2461 0.547075 TGTTTGGTTTGGGAGTCCGA 59.453 50.000 2.26 0.00 35.24 4.55
2257 2462 0.951558 CTGTTTGGTTTGGGAGTCCG 59.048 55.000 2.26 0.00 35.24 4.79
2258 2463 1.681264 CACTGTTTGGTTTGGGAGTCC 59.319 52.381 0.00 0.00 0.00 3.85
2259 2464 1.681264 CCACTGTTTGGTTTGGGAGTC 59.319 52.381 0.00 0.00 41.10 3.36
2260 2465 1.775385 CCACTGTTTGGTTTGGGAGT 58.225 50.000 0.00 0.00 41.10 3.85
2270 2475 0.661020 GTGAACCCGACCACTGTTTG 59.339 55.000 0.00 0.00 0.00 2.93
2271 2476 0.253610 TGTGAACCCGACCACTGTTT 59.746 50.000 0.00 0.00 34.57 2.83
2272 2477 0.472471 ATGTGAACCCGACCACTGTT 59.528 50.000 0.00 0.00 34.57 3.16
2273 2478 0.472471 AATGTGAACCCGACCACTGT 59.528 50.000 0.00 0.00 34.57 3.55
2274 2479 0.874390 CAATGTGAACCCGACCACTG 59.126 55.000 0.00 0.00 34.57 3.66
2275 2480 0.250727 CCAATGTGAACCCGACCACT 60.251 55.000 0.00 0.00 34.57 4.00
2276 2481 1.862602 GCCAATGTGAACCCGACCAC 61.863 60.000 0.00 0.00 0.00 4.16
2277 2482 1.602323 GCCAATGTGAACCCGACCA 60.602 57.895 0.00 0.00 0.00 4.02
2278 2483 2.686816 CGCCAATGTGAACCCGACC 61.687 63.158 0.00 0.00 0.00 4.79
2279 2484 2.686816 CCGCCAATGTGAACCCGAC 61.687 63.158 0.00 0.00 0.00 4.79
2280 2485 2.359354 CCGCCAATGTGAACCCGA 60.359 61.111 0.00 0.00 0.00 5.14
2281 2486 4.114997 GCCGCCAATGTGAACCCG 62.115 66.667 0.00 0.00 0.00 5.28
2282 2487 3.758931 GGCCGCCAATGTGAACCC 61.759 66.667 3.91 0.00 0.00 4.11
2283 2488 2.569354 TTGGCCGCCAATGTGAACC 61.569 57.895 21.31 0.00 38.75 3.62
2284 2489 3.046870 TTGGCCGCCAATGTGAAC 58.953 55.556 21.31 0.00 38.75 3.18
2299 2504 6.866010 TGACACATAAGCTAGCCAATATTG 57.134 37.500 12.13 8.58 0.00 1.90
2300 2505 8.597167 TCTATGACACATAAGCTAGCCAATATT 58.403 33.333 12.13 0.72 0.00 1.28
2301 2506 8.138928 TCTATGACACATAAGCTAGCCAATAT 57.861 34.615 12.13 5.30 0.00 1.28
2302 2507 7.539034 TCTATGACACATAAGCTAGCCAATA 57.461 36.000 12.13 2.86 0.00 1.90
2303 2508 6.425210 TCTATGACACATAAGCTAGCCAAT 57.575 37.500 12.13 1.89 0.00 3.16
2304 2509 5.869649 TCTATGACACATAAGCTAGCCAA 57.130 39.130 12.13 0.00 0.00 4.52
2305 2510 5.869649 TTCTATGACACATAAGCTAGCCA 57.130 39.130 12.13 0.00 0.00 4.75
2306 2511 6.090088 CGAATTCTATGACACATAAGCTAGCC 59.910 42.308 12.13 0.00 0.00 3.93
2307 2512 6.400515 GCGAATTCTATGACACATAAGCTAGC 60.401 42.308 6.62 6.62 0.00 3.42
2308 2513 6.642540 TGCGAATTCTATGACACATAAGCTAG 59.357 38.462 3.52 0.00 0.00 3.42
2309 2514 6.420903 GTGCGAATTCTATGACACATAAGCTA 59.579 38.462 3.52 0.00 0.00 3.32
2310 2515 5.235186 GTGCGAATTCTATGACACATAAGCT 59.765 40.000 3.52 0.00 0.00 3.74
2311 2516 5.435557 GTGCGAATTCTATGACACATAAGC 58.564 41.667 3.52 0.00 0.00 3.09
2312 2517 5.523552 TGGTGCGAATTCTATGACACATAAG 59.476 40.000 3.52 0.00 0.00 1.73
2313 2518 5.293324 GTGGTGCGAATTCTATGACACATAA 59.707 40.000 3.52 0.00 0.00 1.90
2314 2519 4.808895 GTGGTGCGAATTCTATGACACATA 59.191 41.667 3.52 0.00 0.00 2.29
2315 2520 3.623060 GTGGTGCGAATTCTATGACACAT 59.377 43.478 3.52 0.00 0.00 3.21
2316 2521 3.000041 GTGGTGCGAATTCTATGACACA 59.000 45.455 3.52 0.00 0.00 3.72
2317 2522 2.029244 CGTGGTGCGAATTCTATGACAC 59.971 50.000 3.52 5.66 44.77 3.67
2318 2523 2.267426 CGTGGTGCGAATTCTATGACA 58.733 47.619 3.52 0.00 44.77 3.58
2319 2524 2.268298 ACGTGGTGCGAATTCTATGAC 58.732 47.619 3.52 0.00 44.77 3.06
2320 2525 2.165641 AGACGTGGTGCGAATTCTATGA 59.834 45.455 3.52 0.00 44.77 2.15
2321 2526 2.540515 AGACGTGGTGCGAATTCTATG 58.459 47.619 3.52 0.00 44.77 2.23
2322 2527 2.961526 AGACGTGGTGCGAATTCTAT 57.038 45.000 3.52 0.00 44.77 1.98
2323 2528 2.488937 TGTAGACGTGGTGCGAATTCTA 59.511 45.455 3.52 0.00 44.77 2.10
2324 2529 1.271379 TGTAGACGTGGTGCGAATTCT 59.729 47.619 3.52 0.00 44.77 2.40
2325 2530 1.705256 TGTAGACGTGGTGCGAATTC 58.295 50.000 0.00 0.00 44.77 2.17
2326 2531 2.157834 TTGTAGACGTGGTGCGAATT 57.842 45.000 0.00 0.00 44.77 2.17
2327 2532 1.796459 GTTTGTAGACGTGGTGCGAAT 59.204 47.619 0.00 0.00 44.77 3.34
2328 2533 1.210870 GTTTGTAGACGTGGTGCGAA 58.789 50.000 0.00 0.00 44.77 4.70
2329 2534 0.102663 TGTTTGTAGACGTGGTGCGA 59.897 50.000 0.00 0.00 44.77 5.10
2331 2536 1.860676 TCTGTTTGTAGACGTGGTGC 58.139 50.000 0.00 0.00 0.00 5.01
2332 2537 5.924254 TCTATTTCTGTTTGTAGACGTGGTG 59.076 40.000 0.00 0.00 0.00 4.17
2333 2538 6.092955 TCTATTTCTGTTTGTAGACGTGGT 57.907 37.500 0.00 0.00 0.00 4.16
2334 2539 7.416154 TTTCTATTTCTGTTTGTAGACGTGG 57.584 36.000 0.00 0.00 0.00 4.94
2335 2540 8.548721 AGTTTTCTATTTCTGTTTGTAGACGTG 58.451 33.333 0.00 0.00 0.00 4.49
2336 2541 8.548721 CAGTTTTCTATTTCTGTTTGTAGACGT 58.451 33.333 0.00 0.00 0.00 4.34
2337 2542 8.761497 TCAGTTTTCTATTTCTGTTTGTAGACG 58.239 33.333 0.00 0.00 0.00 4.18
2344 2549 9.803315 GGTTTTCTCAGTTTTCTATTTCTGTTT 57.197 29.630 0.00 0.00 0.00 2.83
2345 2550 8.966868 TGGTTTTCTCAGTTTTCTATTTCTGTT 58.033 29.630 0.00 0.00 0.00 3.16
2346 2551 8.519799 TGGTTTTCTCAGTTTTCTATTTCTGT 57.480 30.769 0.00 0.00 0.00 3.41
2347 2552 9.801873 TTTGGTTTTCTCAGTTTTCTATTTCTG 57.198 29.630 0.00 0.00 0.00 3.02
2349 2554 8.755941 GCTTTGGTTTTCTCAGTTTTCTATTTC 58.244 33.333 0.00 0.00 0.00 2.17
2350 2555 8.478066 AGCTTTGGTTTTCTCAGTTTTCTATTT 58.522 29.630 0.00 0.00 0.00 1.40
2351 2556 8.011844 AGCTTTGGTTTTCTCAGTTTTCTATT 57.988 30.769 0.00 0.00 0.00 1.73
2352 2557 7.588497 AGCTTTGGTTTTCTCAGTTTTCTAT 57.412 32.000 0.00 0.00 0.00 1.98
2353 2558 7.404671 AAGCTTTGGTTTTCTCAGTTTTCTA 57.595 32.000 0.00 0.00 0.00 2.10
2354 2559 5.921962 AGCTTTGGTTTTCTCAGTTTTCT 57.078 34.783 0.00 0.00 0.00 2.52
2355 2560 6.968131 AAAGCTTTGGTTTTCTCAGTTTTC 57.032 33.333 11.80 0.00 28.33 2.29
2356 2561 7.611770 ACTAAAGCTTTGGTTTTCTCAGTTTT 58.388 30.769 21.22 0.00 34.94 2.43
2357 2562 7.170393 ACTAAAGCTTTGGTTTTCTCAGTTT 57.830 32.000 21.22 0.00 34.94 2.66
2358 2563 6.775594 ACTAAAGCTTTGGTTTTCTCAGTT 57.224 33.333 21.22 0.00 34.94 3.16
2359 2564 6.377146 TCAACTAAAGCTTTGGTTTTCTCAGT 59.623 34.615 31.23 16.62 39.41 3.41
2360 2565 6.795399 TCAACTAAAGCTTTGGTTTTCTCAG 58.205 36.000 31.23 21.09 39.41 3.35
2361 2566 6.767524 TCAACTAAAGCTTTGGTTTTCTCA 57.232 33.333 31.23 14.53 39.41 3.27
2362 2567 8.568794 AGTATCAACTAAAGCTTTGGTTTTCTC 58.431 33.333 31.23 22.24 39.41 2.87
2363 2568 8.465273 AGTATCAACTAAAGCTTTGGTTTTCT 57.535 30.769 31.23 23.08 39.41 2.52
2364 2569 9.181805 GAAGTATCAACTAAAGCTTTGGTTTTC 57.818 33.333 31.23 26.41 39.41 2.29
2365 2570 8.691797 TGAAGTATCAACTAAAGCTTTGGTTTT 58.308 29.630 31.23 23.74 39.41 2.43
2366 2571 8.232913 TGAAGTATCAACTAAAGCTTTGGTTT 57.767 30.769 31.23 22.51 39.41 3.27
2367 2572 7.817418 TGAAGTATCAACTAAAGCTTTGGTT 57.183 32.000 29.00 29.00 41.64 3.67
2368 2573 7.448469 ACATGAAGTATCAACTAAAGCTTTGGT 59.552 33.333 21.22 21.22 39.49 3.67
2369 2574 7.820648 ACATGAAGTATCAACTAAAGCTTTGG 58.179 34.615 22.02 20.89 39.49 3.28
2370 2575 8.725148 AGACATGAAGTATCAACTAAAGCTTTG 58.275 33.333 22.02 13.48 39.49 2.77
2371 2576 8.854614 AGACATGAAGTATCAACTAAAGCTTT 57.145 30.769 17.30 17.30 39.49 3.51
2372 2577 8.854614 AAGACATGAAGTATCAACTAAAGCTT 57.145 30.769 0.00 0.00 39.49 3.74
2373 2578 8.317679 AGAAGACATGAAGTATCAACTAAAGCT 58.682 33.333 0.00 0.00 39.49 3.74
2374 2579 8.485976 AGAAGACATGAAGTATCAACTAAAGC 57.514 34.615 0.00 0.00 39.49 3.51
2379 2584 8.079203 CGCTATAGAAGACATGAAGTATCAACT 58.921 37.037 3.21 0.00 39.49 3.16
2380 2585 8.076781 TCGCTATAGAAGACATGAAGTATCAAC 58.923 37.037 3.21 0.00 39.49 3.18
2381 2586 8.076781 GTCGCTATAGAAGACATGAAGTATCAA 58.923 37.037 18.21 0.00 39.49 2.57
2382 2587 7.308649 GGTCGCTATAGAAGACATGAAGTATCA 60.309 40.741 22.09 0.00 40.57 2.15
2383 2588 7.024768 GGTCGCTATAGAAGACATGAAGTATC 58.975 42.308 22.09 5.97 36.68 2.24
2384 2589 6.348622 CGGTCGCTATAGAAGACATGAAGTAT 60.349 42.308 22.09 0.00 36.68 2.12
2385 2590 5.049612 CGGTCGCTATAGAAGACATGAAGTA 60.050 44.000 22.09 0.00 36.68 2.24
2386 2591 4.261238 CGGTCGCTATAGAAGACATGAAGT 60.261 45.833 22.09 0.00 36.68 3.01
2387 2592 4.222886 CGGTCGCTATAGAAGACATGAAG 58.777 47.826 22.09 9.93 36.68 3.02
2388 2593 3.550233 GCGGTCGCTATAGAAGACATGAA 60.550 47.826 22.09 0.00 36.68 2.57
2389 2594 2.031069 GCGGTCGCTATAGAAGACATGA 60.031 50.000 22.09 1.17 36.68 3.07
2390 2595 2.287608 TGCGGTCGCTATAGAAGACATG 60.288 50.000 22.09 16.81 42.51 3.21
2391 2596 1.954382 TGCGGTCGCTATAGAAGACAT 59.046 47.619 22.09 0.00 42.51 3.06
2392 2597 1.385528 TGCGGTCGCTATAGAAGACA 58.614 50.000 22.09 7.04 42.51 3.41
2393 2598 2.708386 ATGCGGTCGCTATAGAAGAC 57.292 50.000 16.36 16.05 42.51 3.01
2394 2599 2.159037 CGTATGCGGTCGCTATAGAAGA 59.841 50.000 16.36 0.00 42.51 2.87
2395 2600 2.506865 CGTATGCGGTCGCTATAGAAG 58.493 52.381 16.36 0.00 42.51 2.85
2396 2601 2.606717 CGTATGCGGTCGCTATAGAA 57.393 50.000 16.36 0.00 42.51 2.10
2404 2609 3.394874 CATCGGCGTATGCGGTCG 61.395 66.667 6.85 6.11 44.10 4.79
2405 2610 0.944311 ATTCATCGGCGTATGCGGTC 60.944 55.000 6.85 0.00 44.10 4.79
2406 2611 0.944311 GATTCATCGGCGTATGCGGT 60.944 55.000 6.85 0.00 44.10 5.68
2407 2612 1.626654 GGATTCATCGGCGTATGCGG 61.627 60.000 6.85 8.13 44.10 5.69
2408 2613 0.943835 TGGATTCATCGGCGTATGCG 60.944 55.000 6.85 0.00 44.10 4.73
2409 2614 0.512952 GTGGATTCATCGGCGTATGC 59.487 55.000 6.85 0.00 41.71 3.14
2410 2615 1.148310 GGTGGATTCATCGGCGTATG 58.852 55.000 6.85 9.77 0.00 2.39
2411 2616 1.048601 AGGTGGATTCATCGGCGTAT 58.951 50.000 6.85 0.00 0.00 3.06
2412 2617 0.828022 AAGGTGGATTCATCGGCGTA 59.172 50.000 6.85 0.00 0.00 4.42
2413 2618 0.744414 CAAGGTGGATTCATCGGCGT 60.744 55.000 6.85 0.00 0.00 5.68
2414 2619 2.016961 CAAGGTGGATTCATCGGCG 58.983 57.895 0.00 0.00 0.00 6.46
2415 2620 1.729881 GCAAGGTGGATTCATCGGC 59.270 57.895 0.00 0.00 0.00 5.54
2416 2621 2.016961 CGCAAGGTGGATTCATCGG 58.983 57.895 0.00 0.00 0.00 4.18
2417 2622 1.353103 GCGCAAGGTGGATTCATCG 59.647 57.895 0.30 0.00 38.28 3.84
2418 2623 0.099436 GTGCGCAAGGTGGATTCATC 59.901 55.000 14.00 0.00 38.28 2.92
2419 2624 0.608856 TGTGCGCAAGGTGGATTCAT 60.609 50.000 14.00 0.00 38.28 2.57
2420 2625 0.608856 ATGTGCGCAAGGTGGATTCA 60.609 50.000 14.00 2.05 38.28 2.57
2421 2626 0.099436 GATGTGCGCAAGGTGGATTC 59.901 55.000 14.00 0.00 38.28 2.52
2422 2627 0.322816 AGATGTGCGCAAGGTGGATT 60.323 50.000 14.00 0.00 38.28 3.01
2423 2628 0.541392 TAGATGTGCGCAAGGTGGAT 59.459 50.000 14.00 0.00 38.28 3.41
2424 2629 0.108186 CTAGATGTGCGCAAGGTGGA 60.108 55.000 14.00 0.00 38.28 4.02
2425 2630 1.091771 CCTAGATGTGCGCAAGGTGG 61.092 60.000 14.00 6.33 38.28 4.61
2426 2631 1.091771 CCCTAGATGTGCGCAAGGTG 61.092 60.000 20.67 10.58 38.28 4.00
2427 2632 1.221840 CCCTAGATGTGCGCAAGGT 59.778 57.895 20.67 7.19 38.28 3.50
2428 2633 2.182842 GCCCTAGATGTGCGCAAGG 61.183 63.158 14.00 15.63 38.28 3.61
2429 2634 0.745845 AAGCCCTAGATGTGCGCAAG 60.746 55.000 14.00 5.11 43.44 4.01
2430 2635 0.744414 GAAGCCCTAGATGTGCGCAA 60.744 55.000 14.00 2.60 0.00 4.85
2431 2636 1.153369 GAAGCCCTAGATGTGCGCA 60.153 57.895 5.66 5.66 0.00 6.09
2432 2637 2.240500 CGAAGCCCTAGATGTGCGC 61.241 63.158 0.00 0.00 0.00 6.09
2433 2638 1.592669 CCGAAGCCCTAGATGTGCG 60.593 63.158 0.00 0.00 0.00 5.34
2434 2639 1.889573 GCCGAAGCCCTAGATGTGC 60.890 63.158 0.00 0.00 0.00 4.57
2435 2640 4.445699 GCCGAAGCCCTAGATGTG 57.554 61.111 0.00 0.00 0.00 3.21
2445 2650 0.889186 TTTCAACTCCTGGCCGAAGC 60.889 55.000 0.00 0.00 38.76 3.86
2446 2651 1.604604 TTTTCAACTCCTGGCCGAAG 58.395 50.000 0.00 0.00 0.00 3.79
2447 2652 2.159382 GATTTTCAACTCCTGGCCGAA 58.841 47.619 0.00 0.00 0.00 4.30
2448 2653 1.613255 GGATTTTCAACTCCTGGCCGA 60.613 52.381 0.00 0.00 0.00 5.54
2449 2654 0.811281 GGATTTTCAACTCCTGGCCG 59.189 55.000 0.00 0.00 0.00 6.13
2450 2655 0.811281 CGGATTTTCAACTCCTGGCC 59.189 55.000 0.00 0.00 0.00 5.36
2451 2656 1.468914 GACGGATTTTCAACTCCTGGC 59.531 52.381 0.00 0.00 0.00 4.85
2452 2657 3.059352 AGACGGATTTTCAACTCCTGG 57.941 47.619 0.00 0.00 0.00 4.45
2453 2658 4.065088 TCAAGACGGATTTTCAACTCCTG 58.935 43.478 0.00 0.00 0.00 3.86
2454 2659 4.351874 TCAAGACGGATTTTCAACTCCT 57.648 40.909 0.00 0.00 0.00 3.69
2455 2660 4.515567 AGTTCAAGACGGATTTTCAACTCC 59.484 41.667 0.00 0.00 0.00 3.85
2456 2661 5.334182 GGAGTTCAAGACGGATTTTCAACTC 60.334 44.000 0.00 0.00 38.41 3.01
2457 2662 4.515567 GGAGTTCAAGACGGATTTTCAACT 59.484 41.667 0.00 0.00 0.00 3.16
2458 2663 4.274950 TGGAGTTCAAGACGGATTTTCAAC 59.725 41.667 0.00 0.00 0.00 3.18
2459 2664 4.274950 GTGGAGTTCAAGACGGATTTTCAA 59.725 41.667 0.00 0.00 0.00 2.69
2460 2665 3.813166 GTGGAGTTCAAGACGGATTTTCA 59.187 43.478 0.00 0.00 0.00 2.69
2461 2666 3.188667 GGTGGAGTTCAAGACGGATTTTC 59.811 47.826 0.00 0.00 0.00 2.29
2462 2667 3.146847 GGTGGAGTTCAAGACGGATTTT 58.853 45.455 0.00 0.00 0.00 1.82
2463 2668 2.552373 GGGTGGAGTTCAAGACGGATTT 60.552 50.000 0.00 0.00 0.00 2.17
2464 2669 1.003233 GGGTGGAGTTCAAGACGGATT 59.997 52.381 0.00 0.00 0.00 3.01
2465 2670 0.613777 GGGTGGAGTTCAAGACGGAT 59.386 55.000 0.00 0.00 0.00 4.18
2466 2671 0.471211 AGGGTGGAGTTCAAGACGGA 60.471 55.000 0.00 0.00 0.00 4.69
2467 2672 0.320771 CAGGGTGGAGTTCAAGACGG 60.321 60.000 0.00 0.00 0.00 4.79
2468 2673 0.679505 TCAGGGTGGAGTTCAAGACG 59.320 55.000 0.00 0.00 0.00 4.18
2469 2674 2.569404 AGATCAGGGTGGAGTTCAAGAC 59.431 50.000 0.00 0.00 0.00 3.01
2470 2675 2.907892 AGATCAGGGTGGAGTTCAAGA 58.092 47.619 0.00 0.00 0.00 3.02
2471 2676 3.710209 AAGATCAGGGTGGAGTTCAAG 57.290 47.619 0.00 0.00 0.00 3.02
2472 2677 3.244911 GGAAAGATCAGGGTGGAGTTCAA 60.245 47.826 0.00 0.00 0.00 2.69
2473 2678 2.305927 GGAAAGATCAGGGTGGAGTTCA 59.694 50.000 0.00 0.00 0.00 3.18
2474 2679 2.305927 TGGAAAGATCAGGGTGGAGTTC 59.694 50.000 0.00 0.00 0.00 3.01
2475 2680 2.348472 TGGAAAGATCAGGGTGGAGTT 58.652 47.619 0.00 0.00 0.00 3.01
2476 2681 2.044793 TGGAAAGATCAGGGTGGAGT 57.955 50.000 0.00 0.00 0.00 3.85
2490 2695 2.156917 CACTGCAGCTGATCTTGGAAA 58.843 47.619 20.43 0.00 0.00 3.13
2491 2696 1.612462 CCACTGCAGCTGATCTTGGAA 60.612 52.381 20.43 0.00 0.00 3.53
2492 2697 0.035725 CCACTGCAGCTGATCTTGGA 60.036 55.000 20.43 0.00 0.00 3.53
2493 2698 0.322277 ACCACTGCAGCTGATCTTGG 60.322 55.000 20.43 18.72 0.00 3.61
2494 2699 0.803117 CACCACTGCAGCTGATCTTG 59.197 55.000 20.43 7.96 0.00 3.02
2495 2700 0.689055 TCACCACTGCAGCTGATCTT 59.311 50.000 20.43 0.00 0.00 2.40
2496 2701 0.910338 ATCACCACTGCAGCTGATCT 59.090 50.000 20.43 0.00 0.00 2.75
2497 2702 1.400846 CAATCACCACTGCAGCTGATC 59.599 52.381 20.43 0.12 0.00 2.92
2498 2703 1.460504 CAATCACCACTGCAGCTGAT 58.539 50.000 20.43 14.31 0.00 2.90
2499 2704 1.239296 GCAATCACCACTGCAGCTGA 61.239 55.000 20.43 12.54 38.48 4.26
2500 2705 1.211969 GCAATCACCACTGCAGCTG 59.788 57.895 15.27 10.11 38.48 4.24
2501 2706 1.228337 TGCAATCACCACTGCAGCT 60.228 52.632 15.27 0.00 43.44 4.24
2502 2707 3.357919 TGCAATCACCACTGCAGC 58.642 55.556 15.27 0.00 43.44 5.25
2505 2710 0.966875 TCCCATGCAATCACCACTGC 60.967 55.000 0.00 0.00 39.09 4.40
2506 2711 0.813184 GTCCCATGCAATCACCACTG 59.187 55.000 0.00 0.00 0.00 3.66
2507 2712 0.405198 TGTCCCATGCAATCACCACT 59.595 50.000 0.00 0.00 0.00 4.00
2508 2713 1.477553 ATGTCCCATGCAATCACCAC 58.522 50.000 0.00 0.00 0.00 4.16
2509 2714 2.934887 CTATGTCCCATGCAATCACCA 58.065 47.619 0.00 0.00 0.00 4.17
2510 2715 1.610522 GCTATGTCCCATGCAATCACC 59.389 52.381 0.00 0.00 0.00 4.02
2511 2716 1.265095 CGCTATGTCCCATGCAATCAC 59.735 52.381 0.00 0.00 0.00 3.06
2512 2717 1.140652 TCGCTATGTCCCATGCAATCA 59.859 47.619 0.00 0.00 0.00 2.57
2513 2718 1.532868 GTCGCTATGTCCCATGCAATC 59.467 52.381 0.00 0.00 0.00 2.67
2514 2719 1.597742 GTCGCTATGTCCCATGCAAT 58.402 50.000 0.00 0.00 0.00 3.56
2515 2720 0.463654 GGTCGCTATGTCCCATGCAA 60.464 55.000 0.00 0.00 0.00 4.08
2516 2721 1.146041 GGTCGCTATGTCCCATGCA 59.854 57.895 0.00 0.00 0.00 3.96
2517 2722 1.146041 TGGTCGCTATGTCCCATGC 59.854 57.895 0.00 0.00 0.00 4.06
2518 2723 0.465705 AGTGGTCGCTATGTCCCATG 59.534 55.000 0.00 0.00 0.00 3.66
2519 2724 1.139058 GAAGTGGTCGCTATGTCCCAT 59.861 52.381 0.00 0.00 0.00 4.00
2520 2725 0.535335 GAAGTGGTCGCTATGTCCCA 59.465 55.000 0.00 0.00 0.00 4.37
2521 2726 0.535335 TGAAGTGGTCGCTATGTCCC 59.465 55.000 0.00 0.00 0.00 4.46
2522 2727 1.927895 CTGAAGTGGTCGCTATGTCC 58.072 55.000 0.00 0.00 0.00 4.02
2523 2728 1.281899 GCTGAAGTGGTCGCTATGTC 58.718 55.000 0.00 0.00 0.00 3.06
2524 2729 0.108138 GGCTGAAGTGGTCGCTATGT 60.108 55.000 0.00 0.00 0.00 2.29
2525 2730 1.148157 CGGCTGAAGTGGTCGCTATG 61.148 60.000 0.00 0.00 0.00 2.23
2526 2731 1.141881 CGGCTGAAGTGGTCGCTAT 59.858 57.895 0.00 0.00 0.00 2.97
2527 2732 2.571757 CGGCTGAAGTGGTCGCTA 59.428 61.111 0.00 0.00 0.00 4.26
2530 2735 2.175184 CTTTGCGGCTGAAGTGGTCG 62.175 60.000 0.00 0.00 0.00 4.79
2531 2736 1.576421 CTTTGCGGCTGAAGTGGTC 59.424 57.895 0.00 0.00 0.00 4.02
2532 2737 1.898574 CCTTTGCGGCTGAAGTGGT 60.899 57.895 0.00 0.00 0.00 4.16
2533 2738 2.956987 CCTTTGCGGCTGAAGTGG 59.043 61.111 0.00 0.00 0.00 4.00
2542 2747 2.034879 ACGTCAGATGCCTTTGCGG 61.035 57.895 0.00 0.00 41.78 5.69
2543 2748 1.133253 CACGTCAGATGCCTTTGCG 59.867 57.895 0.00 0.00 41.78 4.85
2544 2749 0.110056 CACACGTCAGATGCCTTTGC 60.110 55.000 0.00 0.00 38.26 3.68
2545 2750 0.110056 GCACACGTCAGATGCCTTTG 60.110 55.000 0.00 0.00 33.06 2.77
2546 2751 0.250467 AGCACACGTCAGATGCCTTT 60.250 50.000 6.92 0.00 40.33 3.11
2547 2752 0.671781 GAGCACACGTCAGATGCCTT 60.672 55.000 6.92 0.00 40.33 4.35
2548 2753 1.079543 GAGCACACGTCAGATGCCT 60.080 57.895 6.92 0.00 40.33 4.75
2549 2754 1.079543 AGAGCACACGTCAGATGCC 60.080 57.895 6.92 0.93 40.33 4.40
2550 2755 1.357258 CCAGAGCACACGTCAGATGC 61.357 60.000 3.10 3.10 39.74 3.91
2551 2756 0.037882 ACCAGAGCACACGTCAGATG 60.038 55.000 0.00 0.00 0.00 2.90
2552 2757 0.244994 GACCAGAGCACACGTCAGAT 59.755 55.000 0.00 0.00 0.00 2.90
2553 2758 1.660355 GACCAGAGCACACGTCAGA 59.340 57.895 0.00 0.00 0.00 3.27
2554 2759 1.730902 CGACCAGAGCACACGTCAG 60.731 63.158 0.00 0.00 0.00 3.51
2555 2760 2.335011 CGACCAGAGCACACGTCA 59.665 61.111 0.00 0.00 0.00 4.35
2556 2761 1.729838 GACGACCAGAGCACACGTC 60.730 63.158 0.00 0.00 44.19 4.34
2557 2762 2.335369 GACGACCAGAGCACACGT 59.665 61.111 0.00 0.00 39.82 4.49
2558 2763 2.430921 GGACGACCAGAGCACACG 60.431 66.667 0.00 0.00 35.97 4.49
2559 2764 2.048127 GGGACGACCAGAGCACAC 60.048 66.667 6.20 0.00 39.85 3.82
2581 2786 2.674033 GCTCACTGGTGCATGCCA 60.674 61.111 16.68 5.80 36.97 4.92
2582 2787 3.446570 GGCTCACTGGTGCATGCC 61.447 66.667 16.68 6.42 35.26 4.40
2583 2788 2.001361 GATGGCTCACTGGTGCATGC 62.001 60.000 11.82 11.82 35.26 4.06
2584 2789 1.712018 CGATGGCTCACTGGTGCATG 61.712 60.000 0.00 0.00 35.26 4.06
2585 2790 1.450848 CGATGGCTCACTGGTGCAT 60.451 57.895 0.00 0.00 35.26 3.96
2586 2791 2.046988 CGATGGCTCACTGGTGCA 60.047 61.111 0.00 0.00 35.26 4.57
2587 2792 2.821366 CCGATGGCTCACTGGTGC 60.821 66.667 0.00 0.00 0.00 5.01
2588 2793 2.821366 GCCGATGGCTCACTGGTG 60.821 66.667 0.00 0.00 46.69 4.17
2598 2803 3.402681 AGTGAGGGTGGCCGATGG 61.403 66.667 0.00 0.00 0.00 3.51
2599 2804 2.124983 CAGTGAGGGTGGCCGATG 60.125 66.667 0.00 0.00 0.00 3.84
2600 2805 4.101448 GCAGTGAGGGTGGCCGAT 62.101 66.667 0.00 0.00 0.00 4.18
2601 2806 3.897681 TAGCAGTGAGGGTGGCCGA 62.898 63.158 0.00 0.00 0.00 5.54
2602 2807 3.390521 TAGCAGTGAGGGTGGCCG 61.391 66.667 0.00 0.00 0.00 6.13
2603 2808 2.269241 GTAGCAGTGAGGGTGGCC 59.731 66.667 0.00 0.00 0.00 5.36
2604 2809 2.125512 CGTAGCAGTGAGGGTGGC 60.126 66.667 0.00 0.00 0.00 5.01
2617 2822 1.598962 CATGCAGGATGGGGCGTAG 60.599 63.158 0.00 0.00 35.86 3.51
2618 2823 2.510411 CATGCAGGATGGGGCGTA 59.490 61.111 0.00 0.00 35.86 4.42
2620 2825 4.889112 AGCATGCAGGATGGGGCG 62.889 66.667 21.98 0.00 35.86 6.13
2621 2826 3.224324 CAGCATGCAGGATGGGGC 61.224 66.667 21.98 0.00 35.86 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.