Multiple sequence alignment - TraesCS6A01G296000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G296000 chr6A 100.000 4339 0 0 1 4339 529563763 529568101 0.000000e+00 8013.0
1 TraesCS6A01G296000 chr6A 89.873 316 31 1 129 444 529506552 529506866 6.360000e-109 405.0
2 TraesCS6A01G296000 chr6A 100.000 185 0 0 5092 5276 529568854 529569038 5.060000e-90 342.0
3 TraesCS6A01G296000 chr6A 93.443 122 7 1 16 137 529493286 529493406 4.200000e-41 180.0
4 TraesCS6A01G296000 chr6A 92.727 55 4 0 768 822 529522762 529522816 4.380000e-11 80.5
5 TraesCS6A01G296000 chr6B 96.618 2277 52 9 2066 4339 575327846 575330100 0.000000e+00 3755.0
6 TraesCS6A01G296000 chr6B 95.442 1075 43 2 997 2068 575326695 575327766 0.000000e+00 1709.0
7 TraesCS6A01G296000 chr6B 87.879 99 11 1 2963 3061 284652757 284652660 1.200000e-21 115.0
8 TraesCS6A01G296000 chr6B 100.000 34 0 0 960 993 575326620 575326653 4.410000e-06 63.9
9 TraesCS6A01G296000 chr6B 96.970 33 1 0 912 944 575326600 575326632 7.380000e-04 56.5
10 TraesCS6A01G296000 chr6D 95.309 1940 52 11 995 2931 385228500 385230403 0.000000e+00 3042.0
11 TraesCS6A01G296000 chr6D 96.201 895 33 1 3446 4339 385231902 385232796 0.000000e+00 1463.0
12 TraesCS6A01G296000 chr6D 90.067 745 68 4 16 756 385226479 385227221 0.000000e+00 961.0
13 TraesCS6A01G296000 chr6D 94.709 567 15 2 2928 3479 385231336 385231902 0.000000e+00 867.0
14 TraesCS6A01G296000 chr6D 100.000 33 0 0 961 993 385228428 385228460 1.590000e-05 62.1
15 TraesCS6A01G296000 chr4A 90.710 183 2 2 5109 5276 586766258 586766440 4.110000e-56 230.0
16 TraesCS6A01G296000 chr3A 90.710 183 2 2 5109 5276 250043250 250043432 4.110000e-56 230.0
17 TraesCS6A01G296000 chr4B 88.304 171 4 3 5109 5263 43741357 43741527 1.940000e-44 191.0
18 TraesCS6A01G296000 chr4B 86.598 97 13 0 2970 3066 601527657 601527561 2.010000e-19 108.0
19 TraesCS6A01G296000 chr2A 89.474 95 10 0 2968 3062 364478313 364478407 2.580000e-23 121.0
20 TraesCS6A01G296000 chr2A 97.368 38 1 0 3316 3353 156370829 156370792 1.230000e-06 65.8
21 TraesCS6A01G296000 chr2A 93.182 44 0 2 3316 3356 267886475 267886432 1.590000e-05 62.1
22 TraesCS6A01G296000 chr3D 90.698 86 8 0 2965 3050 13182036 13182121 1.200000e-21 115.0
23 TraesCS6A01G296000 chr3D 95.238 42 0 1 3316 3355 99872729 99872688 1.230000e-06 65.8
24 TraesCS6A01G296000 chr7D 88.298 94 11 0 2968 3061 262364694 262364787 4.320000e-21 113.0
25 TraesCS6A01G296000 chr7D 89.286 56 0 1 3302 3351 306460285 306460230 1.230000e-06 65.8
26 TraesCS6A01G296000 chr7D 95.122 41 0 2 3308 3347 576360511 576360550 4.410000e-06 63.9
27 TraesCS6A01G296000 chr4D 87.755 98 10 2 2970 3066 477112318 477112222 4.320000e-21 113.0
28 TraesCS6A01G296000 chr5D 76.522 230 39 10 315 539 528963291 528963072 1.550000e-20 111.0
29 TraesCS6A01G296000 chr1D 80.576 139 23 3 345 482 314576999 314576864 2.600000e-18 104.0
30 TraesCS6A01G296000 chr1D 84.211 95 12 2 316 409 395457762 395457854 7.280000e-14 89.8
31 TraesCS6A01G296000 chr1B 84.404 109 12 5 2958 3065 524394670 524394774 9.350000e-18 102.0
32 TraesCS6A01G296000 chr1B 92.857 42 1 2 5092 5133 636748183 636748144 5.710000e-05 60.2
33 TraesCS6A01G296000 chr7B 96.296 54 2 0 5092 5145 705891424 705891371 7.280000e-14 89.8
34 TraesCS6A01G296000 chr7B 92.857 42 1 2 5092 5133 91249726 91249687 5.710000e-05 60.2
35 TraesCS6A01G296000 chr7B 88.679 53 0 1 3300 3346 282330655 282330603 5.710000e-05 60.2
36 TraesCS6A01G296000 chr7A 87.500 56 1 1 3302 3351 359050633 359050688 5.710000e-05 60.2
37 TraesCS6A01G296000 chr3B 92.857 42 1 2 5092 5133 24916594 24916555 5.710000e-05 60.2
38 TraesCS6A01G296000 chr3B 92.857 42 1 2 5092 5133 291302169 291302130 5.710000e-05 60.2
39 TraesCS6A01G296000 chr3B 92.857 42 1 2 5092 5133 525232455 525232416 5.710000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G296000 chr6A 529563763 529569038 5275 False 4177.50 8013 100.0000 1 5276 2 chr6A.!!$F4 5275
1 TraesCS6A01G296000 chr6B 575326600 575330100 3500 False 1396.10 3755 97.2575 912 4339 4 chr6B.!!$F1 3427
2 TraesCS6A01G296000 chr6D 385226479 385232796 6317 False 1279.02 3042 95.2572 16 4339 5 chr6D.!!$F1 4323

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
748 753 0.040425 GGTTTGTCGAATGCTTGCGT 60.040 50.000 0.0 0.0 0.00 5.24 F
750 755 0.040514 TTTGTCGAATGCTTGCGTGG 60.041 50.000 0.0 0.0 0.00 4.94 F
932 1967 0.105039 CTGTCGGAGATGCCCTTACC 59.895 60.000 0.0 0.0 40.67 2.85 F
933 1968 0.325296 TGTCGGAGATGCCCTTACCT 60.325 55.000 0.0 0.0 40.67 3.08 F
942 1977 0.608035 TGCCCTTACCTTTTCAGCCG 60.608 55.000 0.0 0.0 0.00 5.52 F
943 1978 0.608308 GCCCTTACCTTTTCAGCCGT 60.608 55.000 0.0 0.0 0.00 5.68 F
1084 2157 0.758685 CGCCCTCCTCTCCTCTTCAT 60.759 60.000 0.0 0.0 0.00 2.57 F
1227 2300 1.455773 TCTCCGAGTGGCCGATCAT 60.456 57.895 0.0 0.0 34.14 2.45 F
2012 3088 2.071778 ACTGATGTTGCCTTGTGGTT 57.928 45.000 0.0 0.0 35.27 3.67 F
3999 6142 1.905512 GGAGACCGTGGGTAAGCAT 59.094 57.895 0.0 0.0 35.25 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2527 3686 0.250295 CCAAGGGAAGACGAGTGCAA 60.250 55.000 0.00 0.00 0.00 4.08 R
2875 4034 7.148918 CGCAAACAAAATTTGAGTTCTATGAGG 60.149 37.037 13.19 0.00 0.00 3.86 R
3052 5149 7.048512 GTGTATGTAAAGAATGCTACTCCCTT 58.951 38.462 0.00 0.00 0.00 3.95 R
3095 5192 6.490040 ACATTACAAGGACATGCTTAACAACT 59.510 34.615 0.00 0.00 0.00 3.16 R
3236 5346 5.924825 ACAACAGTCCTATCGTTGAAGTAAC 59.075 40.000 8.37 0.00 42.03 2.50 R
3340 5450 9.220767 CTCTTCTGGGCAAAATATATTACTACC 57.779 37.037 0.00 0.94 0.00 3.18 R
3470 5613 5.172205 TGCGTTATAGCACAACATACAGAA 58.828 37.500 0.00 0.00 42.92 3.02 R
3713 5856 6.020281 CGTGTAGATTTAGCTGTGACAAGATC 60.020 42.308 0.00 0.00 0.00 2.75 R
4252 6395 1.539280 GGCAGTAGATTTCTCCGGAGC 60.539 57.143 27.39 12.69 0.00 4.70 R
5093 7237 0.100682 CCATCACGACGTTCGATCCT 59.899 55.000 13.06 0.00 43.74 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.968197 GACGGTCACACAGTCCTC 57.032 61.111 2.62 0.00 37.34 3.71
23 24 4.742201 CACACAGTCCTCCCGCCG 62.742 72.222 0.00 0.00 0.00 6.46
48 49 2.427320 CCGATGGTGCCCGATGAT 59.573 61.111 0.00 0.00 0.00 2.45
61 62 1.039068 CGATGATGAGGAGTGGCTCT 58.961 55.000 0.00 0.00 0.00 4.09
78 79 0.042131 TCTTCCCATGGGTCTACCGT 59.958 55.000 30.28 0.00 44.64 4.83
142 146 2.040544 CAAGAACCCGATGGCGCTT 61.041 57.895 7.64 0.00 35.83 4.68
145 149 4.077184 AACCCGATGGCGCTTCGA 62.077 61.111 26.90 3.50 38.88 3.71
151 155 1.300233 GATGGCGCTTCGAGTAGGG 60.300 63.158 7.64 0.00 0.00 3.53
154 158 2.583593 GCGCTTCGAGTAGGGCTG 60.584 66.667 16.46 2.89 46.92 4.85
160 164 0.902984 TTCGAGTAGGGCTGGAGCAA 60.903 55.000 0.20 0.00 44.36 3.91
188 192 1.675641 GAGGCGTTGGAGGCAACAT 60.676 57.895 0.00 0.00 39.37 2.71
199 203 2.401766 GGCAACATCAGAGGTGGCG 61.402 63.158 8.49 0.00 36.01 5.69
224 228 1.454201 GGCCAAGTTGAAGAGGTAGC 58.546 55.000 3.87 0.00 0.00 3.58
226 230 2.619074 GGCCAAGTTGAAGAGGTAGCAT 60.619 50.000 3.87 0.00 0.00 3.79
230 234 3.618690 AGTTGAAGAGGTAGCATGACC 57.381 47.619 0.00 0.00 40.08 4.02
235 239 0.396417 AGAGGTAGCATGACCGCTCT 60.396 55.000 4.27 0.00 45.47 4.09
236 240 1.133761 AGAGGTAGCATGACCGCTCTA 60.134 52.381 4.27 0.00 45.47 2.43
289 293 0.528466 CATCCTCCACATCACCGACG 60.528 60.000 0.00 0.00 0.00 5.12
312 316 0.904649 CTGACTACCCACCTCATGCA 59.095 55.000 0.00 0.00 0.00 3.96
336 340 2.916181 GCCTACCCGGACGCCTAT 60.916 66.667 0.73 0.00 33.16 2.57
337 341 3.048602 CCTACCCGGACGCCTATG 58.951 66.667 0.73 0.00 33.16 2.23
386 390 1.291877 CCGGCGAGAAAGTGGTGAAG 61.292 60.000 9.30 0.00 0.00 3.02
398 402 1.040646 TGGTGAAGCTCGACACTCTT 58.959 50.000 14.88 0.00 37.22 2.85
453 457 1.682854 AGAACTTGTCCGTCGGTTACA 59.317 47.619 11.88 6.43 0.00 2.41
455 459 3.507233 AGAACTTGTCCGTCGGTTACATA 59.493 43.478 11.88 0.42 0.00 2.29
456 460 3.498927 ACTTGTCCGTCGGTTACATAG 57.501 47.619 11.88 11.15 0.00 2.23
462 466 5.765176 TGTCCGTCGGTTACATAGATTATG 58.235 41.667 11.88 0.00 41.88 1.90
483 487 8.684386 TTATGTGAACTGTGGTGATCTTTTAA 57.316 30.769 0.00 0.00 0.00 1.52
487 491 7.078228 GTGAACTGTGGTGATCTTTTAATGAC 58.922 38.462 0.00 0.00 0.00 3.06
488 492 6.206634 TGAACTGTGGTGATCTTTTAATGACC 59.793 38.462 0.00 0.00 33.91 4.02
489 493 5.630121 ACTGTGGTGATCTTTTAATGACCA 58.370 37.500 0.00 0.00 40.11 4.02
490 494 6.068010 ACTGTGGTGATCTTTTAATGACCAA 58.932 36.000 0.00 0.00 43.27 3.67
495 500 9.520204 GTGGTGATCTTTTAATGACCAATTATG 57.480 33.333 0.00 0.00 43.27 1.90
499 504 8.694540 TGATCTTTTAATGACCAATTATGTGGG 58.305 33.333 0.00 0.00 43.56 4.61
502 507 9.535170 TCTTTTAATGACCAATTATGTGGGTTA 57.465 29.630 0.00 0.00 43.56 2.85
555 560 2.690326 GTGTGAACACGGAGCAGTT 58.310 52.632 0.00 0.00 37.10 3.16
556 561 1.860676 GTGTGAACACGGAGCAGTTA 58.139 50.000 0.00 0.00 37.10 2.24
567 572 3.262936 GCAGTTACATGCACCGCA 58.737 55.556 0.00 0.00 45.77 5.69
571 576 2.926159 GCAGTTACATGCACCGCAAAAT 60.926 45.455 0.00 0.00 45.77 1.82
572 577 3.671971 GCAGTTACATGCACCGCAAAATA 60.672 43.478 0.00 0.00 45.77 1.40
579 584 3.257935 CACCGCAAAATAGGGTGGA 57.742 52.632 1.55 0.00 45.84 4.02
631 636 0.748450 TTGGAACGACGTGAGAGGTT 59.252 50.000 0.00 0.00 34.03 3.50
636 641 1.613836 ACGACGTGAGAGGTTACCTT 58.386 50.000 4.99 0.00 31.76 3.50
637 642 1.538950 ACGACGTGAGAGGTTACCTTC 59.461 52.381 4.99 6.04 31.76 3.46
669 674 0.524816 CATGAATGCGGCACTTGAGC 60.525 55.000 4.03 0.00 0.00 4.26
700 705 2.222819 CGCTTCGGATAGAAAAGTGTGC 60.223 50.000 0.00 0.00 38.57 4.57
704 709 4.471904 TCGGATAGAAAAGTGTGCAGAT 57.528 40.909 0.00 0.00 0.00 2.90
713 718 3.996921 AAGTGTGCAGATGAGGAAGAT 57.003 42.857 0.00 0.00 0.00 2.40
727 732 3.126453 AGGAAGATGGTTTGGATAGGCT 58.874 45.455 0.00 0.00 0.00 4.58
734 739 3.963129 TGGTTTGGATAGGCTAGGTTTG 58.037 45.455 0.00 0.00 0.00 2.93
736 741 3.945921 GGTTTGGATAGGCTAGGTTTGTC 59.054 47.826 0.00 0.00 0.00 3.18
748 753 0.040425 GGTTTGTCGAATGCTTGCGT 60.040 50.000 0.00 0.00 0.00 5.24
750 755 0.040514 TTTGTCGAATGCTTGCGTGG 60.041 50.000 0.00 0.00 0.00 4.94
756 761 2.807631 GAATGCTTGCGTGGCAGTGG 62.808 60.000 3.31 0.00 43.15 4.00
768 773 2.432628 CAGTGGGCCGAACGTCTC 60.433 66.667 0.00 0.00 0.00 3.36
769 774 2.915659 AGTGGGCCGAACGTCTCA 60.916 61.111 0.00 0.00 0.00 3.27
770 775 2.737376 GTGGGCCGAACGTCTCAC 60.737 66.667 0.00 0.00 0.00 3.51
771 776 3.998672 TGGGCCGAACGTCTCACC 61.999 66.667 0.00 0.00 0.00 4.02
772 777 3.692406 GGGCCGAACGTCTCACCT 61.692 66.667 0.00 0.00 0.00 4.00
773 778 2.126031 GGCCGAACGTCTCACCTC 60.126 66.667 0.00 0.00 0.00 3.85
775 780 2.927580 GCCGAACGTCTCACCTCCA 61.928 63.158 0.00 0.00 0.00 3.86
778 783 0.314302 CGAACGTCTCACCTCCACTT 59.686 55.000 0.00 0.00 0.00 3.16
779 784 1.269621 CGAACGTCTCACCTCCACTTT 60.270 52.381 0.00 0.00 0.00 2.66
780 785 2.802057 CGAACGTCTCACCTCCACTTTT 60.802 50.000 0.00 0.00 0.00 2.27
781 786 2.240493 ACGTCTCACCTCCACTTTTG 57.760 50.000 0.00 0.00 0.00 2.44
782 787 1.202651 ACGTCTCACCTCCACTTTTGG 60.203 52.381 0.00 0.00 45.56 3.28
783 788 1.202651 CGTCTCACCTCCACTTTTGGT 60.203 52.381 0.00 0.00 44.35 3.67
784 789 2.495084 GTCTCACCTCCACTTTTGGTC 58.505 52.381 0.00 0.00 44.35 4.02
785 790 1.070134 TCTCACCTCCACTTTTGGTCG 59.930 52.381 0.00 0.00 44.35 4.79
786 791 0.107831 TCACCTCCACTTTTGGTCGG 59.892 55.000 0.00 0.00 44.35 4.79
787 792 1.228154 ACCTCCACTTTTGGTCGGC 60.228 57.895 0.00 0.00 44.35 5.54
788 793 1.228124 CCTCCACTTTTGGTCGGCA 60.228 57.895 0.00 0.00 44.35 5.69
789 794 0.609131 CCTCCACTTTTGGTCGGCAT 60.609 55.000 0.00 0.00 44.35 4.40
790 795 0.523072 CTCCACTTTTGGTCGGCATG 59.477 55.000 0.00 0.00 44.35 4.06
791 796 0.109532 TCCACTTTTGGTCGGCATGA 59.890 50.000 0.00 0.00 44.35 3.07
792 797 0.958091 CCACTTTTGGTCGGCATGAA 59.042 50.000 0.00 0.00 38.23 2.57
793 798 1.545582 CCACTTTTGGTCGGCATGAAT 59.454 47.619 0.00 0.00 38.23 2.57
805 810 1.205657 GCATGAATGCGGCAATTGAG 58.794 50.000 10.34 3.16 44.67 3.02
806 811 1.205657 CATGAATGCGGCAATTGAGC 58.794 50.000 10.34 14.05 0.00 4.26
807 812 0.248743 ATGAATGCGGCAATTGAGCG 60.249 50.000 10.34 0.00 34.64 5.03
808 813 1.587088 GAATGCGGCAATTGAGCGG 60.587 57.895 10.34 0.00 37.82 5.52
813 818 4.842091 GGCAATTGAGCGGCGCTG 62.842 66.667 41.51 25.95 39.88 5.18
815 820 2.099062 CAATTGAGCGGCGCTGAC 59.901 61.111 41.51 26.17 39.88 3.51
816 821 3.127533 AATTGAGCGGCGCTGACC 61.128 61.111 41.51 25.37 39.88 4.02
827 832 1.805539 CGCTGACCGCTTCGAATGA 60.806 57.895 0.00 0.00 36.13 2.57
828 833 1.351430 CGCTGACCGCTTCGAATGAA 61.351 55.000 0.00 0.00 36.13 2.57
829 834 0.796312 GCTGACCGCTTCGAATGAAA 59.204 50.000 0.00 0.00 32.66 2.69
830 835 1.196808 GCTGACCGCTTCGAATGAAAA 59.803 47.619 0.00 0.00 32.66 2.29
831 836 2.350388 GCTGACCGCTTCGAATGAAAAA 60.350 45.455 0.00 0.00 32.66 1.94
832 837 3.670627 GCTGACCGCTTCGAATGAAAAAT 60.671 43.478 0.00 0.00 32.66 1.82
833 838 4.475944 CTGACCGCTTCGAATGAAAAATT 58.524 39.130 0.00 0.00 32.66 1.82
834 839 4.225984 TGACCGCTTCGAATGAAAAATTG 58.774 39.130 0.00 0.00 32.66 2.32
835 840 4.226761 GACCGCTTCGAATGAAAAATTGT 58.773 39.130 0.00 0.00 32.66 2.71
838 843 5.150683 CCGCTTCGAATGAAAAATTGTGTA 58.849 37.500 0.00 0.00 32.66 2.90
839 844 5.283717 CCGCTTCGAATGAAAAATTGTGTAG 59.716 40.000 0.00 0.00 32.66 2.74
840 845 6.077197 CGCTTCGAATGAAAAATTGTGTAGA 58.923 36.000 0.00 0.00 32.66 2.59
841 846 6.742718 CGCTTCGAATGAAAAATTGTGTAGAT 59.257 34.615 0.00 0.00 32.66 1.98
843 848 8.915654 GCTTCGAATGAAAAATTGTGTAGATTT 58.084 29.630 0.00 0.00 32.66 2.17
845 850 8.741101 TCGAATGAAAAATTGTGTAGATTTGG 57.259 30.769 0.00 0.00 0.00 3.28
846 851 8.572185 TCGAATGAAAAATTGTGTAGATTTGGA 58.428 29.630 0.00 0.00 0.00 3.53
859 864 9.559732 TGTGTAGATTTGGATATATCAGGTTTG 57.440 33.333 14.60 0.00 0.00 2.93
861 866 7.665559 TGTAGATTTGGATATATCAGGTTTGCC 59.334 37.037 14.60 0.00 0.00 4.52
862 867 5.707298 AGATTTGGATATATCAGGTTTGCCG 59.293 40.000 14.60 0.00 40.50 5.69
866 871 5.003160 TGGATATATCAGGTTTGCCGAATG 58.997 41.667 14.60 0.00 40.50 2.67
870 875 0.597568 TCAGGTTTGCCGAATGCTTG 59.402 50.000 0.00 0.00 42.00 4.01
871 876 0.314935 CAGGTTTGCCGAATGCTTGT 59.685 50.000 0.00 0.00 42.00 3.16
873 878 2.164219 CAGGTTTGCCGAATGCTTGTAT 59.836 45.455 0.00 0.00 42.00 2.29
874 879 2.164219 AGGTTTGCCGAATGCTTGTATG 59.836 45.455 0.00 0.00 42.00 2.39
875 880 2.529151 GTTTGCCGAATGCTTGTATGG 58.471 47.619 0.00 0.00 42.00 2.74
876 881 1.102154 TTGCCGAATGCTTGTATGGG 58.898 50.000 0.00 0.00 42.00 4.00
877 882 0.254462 TGCCGAATGCTTGTATGGGA 59.746 50.000 0.00 0.00 42.00 4.37
878 883 0.947244 GCCGAATGCTTGTATGGGAG 59.053 55.000 0.00 0.00 36.87 4.30
879 884 1.747206 GCCGAATGCTTGTATGGGAGT 60.747 52.381 0.00 0.00 36.87 3.85
880 885 1.942657 CCGAATGCTTGTATGGGAGTG 59.057 52.381 0.00 0.00 0.00 3.51
881 886 1.942657 CGAATGCTTGTATGGGAGTGG 59.057 52.381 0.00 0.00 0.00 4.00
882 887 2.301346 GAATGCTTGTATGGGAGTGGG 58.699 52.381 0.00 0.00 0.00 4.61
883 888 0.552848 ATGCTTGTATGGGAGTGGGG 59.447 55.000 0.00 0.00 0.00 4.96
884 889 1.453928 GCTTGTATGGGAGTGGGGC 60.454 63.158 0.00 0.00 0.00 5.80
885 890 1.153168 CTTGTATGGGAGTGGGGCG 60.153 63.158 0.00 0.00 0.00 6.13
886 891 1.613928 TTGTATGGGAGTGGGGCGA 60.614 57.895 0.00 0.00 0.00 5.54
887 892 1.202099 TTGTATGGGAGTGGGGCGAA 61.202 55.000 0.00 0.00 0.00 4.70
888 893 1.153229 GTATGGGAGTGGGGCGAAC 60.153 63.158 0.00 0.00 0.00 3.95
889 894 2.727392 TATGGGAGTGGGGCGAACG 61.727 63.158 0.00 0.00 0.00 3.95
902 1221 2.909965 GAACGCCCACAAAGCCCA 60.910 61.111 0.00 0.00 0.00 5.36
903 1222 2.443016 AACGCCCACAAAGCCCAA 60.443 55.556 0.00 0.00 0.00 4.12
904 1223 2.022240 GAACGCCCACAAAGCCCAAA 62.022 55.000 0.00 0.00 0.00 3.28
905 1224 1.617947 AACGCCCACAAAGCCCAAAA 61.618 50.000 0.00 0.00 0.00 2.44
907 1226 0.950071 CGCCCACAAAGCCCAAAATG 60.950 55.000 0.00 0.00 0.00 2.32
909 1228 1.003464 GCCCACAAAGCCCAAAATGAT 59.997 47.619 0.00 0.00 0.00 2.45
910 1229 2.702261 CCCACAAAGCCCAAAATGATG 58.298 47.619 0.00 0.00 0.00 3.07
914 1949 3.007182 CACAAAGCCCAAAATGATGGTCT 59.993 43.478 0.00 0.00 38.91 3.85
931 1966 1.112113 TCTGTCGGAGATGCCCTTAC 58.888 55.000 0.00 0.00 40.67 2.34
932 1967 0.105039 CTGTCGGAGATGCCCTTACC 59.895 60.000 0.00 0.00 40.67 2.85
933 1968 0.325296 TGTCGGAGATGCCCTTACCT 60.325 55.000 0.00 0.00 40.67 3.08
934 1969 0.831307 GTCGGAGATGCCCTTACCTT 59.169 55.000 0.00 0.00 40.67 3.50
935 1970 1.209747 GTCGGAGATGCCCTTACCTTT 59.790 52.381 0.00 0.00 40.67 3.11
936 1971 1.913419 TCGGAGATGCCCTTACCTTTT 59.087 47.619 0.00 0.00 0.00 2.27
937 1972 2.093128 TCGGAGATGCCCTTACCTTTTC 60.093 50.000 0.00 0.00 0.00 2.29
938 1973 2.355716 CGGAGATGCCCTTACCTTTTCA 60.356 50.000 0.00 0.00 0.00 2.69
939 1974 3.282885 GGAGATGCCCTTACCTTTTCAG 58.717 50.000 0.00 0.00 0.00 3.02
940 1975 2.685388 GAGATGCCCTTACCTTTTCAGC 59.315 50.000 0.00 0.00 0.00 4.26
941 1976 1.751351 GATGCCCTTACCTTTTCAGCC 59.249 52.381 0.00 0.00 0.00 4.85
942 1977 0.608035 TGCCCTTACCTTTTCAGCCG 60.608 55.000 0.00 0.00 0.00 5.52
943 1978 0.608308 GCCCTTACCTTTTCAGCCGT 60.608 55.000 0.00 0.00 0.00 5.68
944 1979 1.905637 CCCTTACCTTTTCAGCCGTT 58.094 50.000 0.00 0.00 0.00 4.44
945 1980 2.235891 CCCTTACCTTTTCAGCCGTTT 58.764 47.619 0.00 0.00 0.00 3.60
946 1981 2.030274 CCCTTACCTTTTCAGCCGTTTG 60.030 50.000 0.00 0.00 0.00 2.93
947 1982 2.621526 CCTTACCTTTTCAGCCGTTTGT 59.378 45.455 0.00 0.00 0.00 2.83
948 1983 3.304458 CCTTACCTTTTCAGCCGTTTGTC 60.304 47.826 0.00 0.00 0.00 3.18
949 1984 2.052782 ACCTTTTCAGCCGTTTGTCT 57.947 45.000 0.00 0.00 0.00 3.41
950 1985 3.202829 ACCTTTTCAGCCGTTTGTCTA 57.797 42.857 0.00 0.00 0.00 2.59
951 1986 3.547746 ACCTTTTCAGCCGTTTGTCTAA 58.452 40.909 0.00 0.00 0.00 2.10
952 1987 3.949113 ACCTTTTCAGCCGTTTGTCTAAA 59.051 39.130 0.00 0.00 0.00 1.85
953 1988 4.399934 ACCTTTTCAGCCGTTTGTCTAAAA 59.600 37.500 0.00 0.00 0.00 1.52
954 1989 5.105675 ACCTTTTCAGCCGTTTGTCTAAAAA 60.106 36.000 0.00 0.00 0.00 1.94
993 2028 7.321153 CCGTCTTCCTCATCTAAAGAAAACTA 58.679 38.462 0.00 0.00 31.26 2.24
1084 2157 0.758685 CGCCCTCCTCTCCTCTTCAT 60.759 60.000 0.00 0.00 0.00 2.57
1085 2158 1.506025 GCCCTCCTCTCCTCTTCATT 58.494 55.000 0.00 0.00 0.00 2.57
1227 2300 1.455773 TCTCCGAGTGGCCGATCAT 60.456 57.895 0.00 0.00 34.14 2.45
1428 2501 7.372451 TCTTCCTTTGGTTCGTTATATGTTG 57.628 36.000 0.00 0.00 0.00 3.33
1468 2541 2.596904 ATCGTGGTTGTAATCGGGAG 57.403 50.000 0.00 0.00 0.00 4.30
1474 2547 2.290641 TGGTTGTAATCGGGAGTGCATT 60.291 45.455 0.00 0.00 0.00 3.56
1521 2594 5.036117 ACATTCGGAGCATAACTGGTAAT 57.964 39.130 0.00 0.00 31.99 1.89
1610 2686 8.515414 ACTTCTGAAAATACTCAAAATAGGCAC 58.485 33.333 0.00 0.00 0.00 5.01
1622 2698 7.013655 ACTCAAAATAGGCACATTATGGATGAC 59.986 37.037 0.00 0.00 39.15 3.06
1625 2701 3.777106 AGGCACATTATGGATGACGAT 57.223 42.857 0.00 0.00 39.15 3.73
1626 2702 3.405831 AGGCACATTATGGATGACGATG 58.594 45.455 0.00 0.00 39.15 3.84
1627 2703 3.071457 AGGCACATTATGGATGACGATGA 59.929 43.478 0.00 0.00 39.15 2.92
1693 2769 7.201644 GCTAAATTATGCTCTGAACTGTTGCTA 60.202 37.037 0.00 0.00 0.00 3.49
1724 2800 3.068024 TGGAAACTGCCAGTTGTGAAATC 59.932 43.478 11.51 3.52 38.66 2.17
1920 2996 9.153479 AGAGCTCTGAATACCATACTATCTTTT 57.847 33.333 17.42 0.00 0.00 2.27
1956 3032 3.777106 AAGCTTGGACTCATCTGTCAA 57.223 42.857 0.00 0.00 38.61 3.18
2012 3088 2.071778 ACTGATGTTGCCTTGTGGTT 57.928 45.000 0.00 0.00 35.27 3.67
2043 3119 6.677920 GCTGCACGATGGAAAATTTATGTACT 60.678 38.462 0.00 0.00 0.00 2.73
2053 3129 9.177608 TGGAAAATTTATGTACTCATCTTCCTG 57.822 33.333 0.00 0.00 35.70 3.86
2527 3686 6.723052 AGATCATCCTTTTTGTGGACAAGATT 59.277 34.615 0.00 0.00 37.15 2.40
2875 4034 2.346803 ACACATCGACAGTGCATAACC 58.653 47.619 17.10 0.00 40.59 2.85
3095 5192 7.109501 ACATACACTTTCTAATGTGGTATGCA 58.890 34.615 18.26 0.00 38.11 3.96
3365 5475 8.945193 AGGTAGTAATATATTTTGCCCAGAAGA 58.055 33.333 2.68 0.00 0.00 2.87
3460 5570 3.066621 TGTGGAAGATGCTGTGTGTTTTC 59.933 43.478 0.00 0.00 0.00 2.29
3464 5607 3.976793 AGATGCTGTGTGTTTTCTGTG 57.023 42.857 0.00 0.00 0.00 3.66
3470 5613 4.397730 TGCTGTGTGTTTTCTGTGTAATGT 59.602 37.500 0.00 0.00 0.00 2.71
3557 5700 2.238898 ACTGAACTATGGTTGCTACCCC 59.761 50.000 15.00 0.00 44.35 4.95
3755 5898 2.307768 CACGGAGAGGGTGCTATTCTA 58.692 52.381 0.00 0.00 0.00 2.10
3936 6079 2.158638 AGGAGGTCCGGACATAGTAGAC 60.159 54.545 34.40 15.31 42.08 2.59
3999 6142 1.905512 GGAGACCGTGGGTAAGCAT 59.094 57.895 0.00 0.00 35.25 3.79
4252 6395 0.173481 TCGGAGAATCAAGACGCTGG 59.827 55.000 0.00 0.00 36.25 4.85
5108 7252 4.379221 GGAGGATCGAACGTCGTG 57.621 61.111 0.00 0.00 41.35 4.35
5109 7253 1.798735 GGAGGATCGAACGTCGTGA 59.201 57.895 0.00 0.00 41.35 4.35
5110 7254 0.381089 GGAGGATCGAACGTCGTGAT 59.619 55.000 0.00 0.00 41.35 3.06
5111 7255 1.467875 GAGGATCGAACGTCGTGATG 58.532 55.000 0.00 0.00 41.35 3.07
5112 7256 0.100682 AGGATCGAACGTCGTGATGG 59.899 55.000 0.00 0.00 41.35 3.51
5113 7257 0.179145 GGATCGAACGTCGTGATGGT 60.179 55.000 0.00 0.00 41.35 3.55
5114 7258 1.625616 GATCGAACGTCGTGATGGTT 58.374 50.000 0.00 0.00 41.35 3.67
5115 7259 1.582502 GATCGAACGTCGTGATGGTTC 59.417 52.381 0.00 6.67 41.35 3.62
5117 7261 3.096541 GAACGTCGTGATGGTTCGA 57.903 52.632 0.00 0.00 31.82 3.71
5121 7265 3.031660 GTCGTGATGGTTCGACCTC 57.968 57.895 6.46 2.63 46.83 3.85
5122 7266 0.797249 GTCGTGATGGTTCGACCTCG 60.797 60.000 6.46 0.00 46.83 4.63
5123 7267 3.130217 GTCGTGATGGTTCGACCTCGA 62.130 57.143 6.46 0.00 46.83 4.04
5131 7275 3.515286 TCGACCTCGATCCCGCAC 61.515 66.667 0.00 0.00 44.22 5.34
5132 7276 4.570663 CGACCTCGATCCCGCACC 62.571 72.222 0.00 0.00 43.02 5.01
5133 7277 4.570663 GACCTCGATCCCGCACCG 62.571 72.222 0.00 0.00 35.37 4.94
5135 7279 4.271816 CCTCGATCCCGCACCGAG 62.272 72.222 0.00 0.00 46.48 4.63
5136 7280 4.271816 CTCGATCCCGCACCGAGG 62.272 72.222 0.00 0.00 44.11 4.63
5137 7281 4.807631 TCGATCCCGCACCGAGGA 62.808 66.667 0.00 0.00 36.36 3.71
5138 7282 3.833645 CGATCCCGCACCGAGGAA 61.834 66.667 0.00 0.00 35.30 3.36
5139 7283 2.582436 GATCCCGCACCGAGGAAA 59.418 61.111 0.00 0.00 35.30 3.13
5140 7284 1.146263 GATCCCGCACCGAGGAAAT 59.854 57.895 0.00 0.00 35.30 2.17
5141 7285 0.880718 GATCCCGCACCGAGGAAATC 60.881 60.000 0.00 0.00 35.30 2.17
5153 7297 2.285488 CGAGGAAATCGCTAGGAAAAGC 59.715 50.000 0.00 0.00 45.98 3.51
5154 7298 2.614520 GAGGAAATCGCTAGGAAAAGCC 59.385 50.000 0.00 0.00 39.43 4.35
5165 7309 2.902065 GGAAAAGCCTTGTTCGCTAG 57.098 50.000 0.00 0.00 34.84 3.42
5166 7310 1.135660 GGAAAAGCCTTGTTCGCTAGC 60.136 52.381 4.06 4.06 34.84 3.42
5167 7311 1.807142 GAAAAGCCTTGTTCGCTAGCT 59.193 47.619 13.93 0.00 34.84 3.32
5168 7312 2.762535 AAAGCCTTGTTCGCTAGCTA 57.237 45.000 13.93 0.00 34.84 3.32
5169 7313 2.011540 AAGCCTTGTTCGCTAGCTAC 57.988 50.000 13.93 11.21 34.84 3.58
5170 7314 1.187087 AGCCTTGTTCGCTAGCTACT 58.813 50.000 13.93 0.00 33.91 2.57
5171 7315 1.135333 AGCCTTGTTCGCTAGCTACTC 59.865 52.381 13.93 1.36 33.91 2.59
5172 7316 1.803252 GCCTTGTTCGCTAGCTACTCC 60.803 57.143 13.93 0.00 0.00 3.85
5173 7317 1.751924 CCTTGTTCGCTAGCTACTCCT 59.248 52.381 13.93 0.00 0.00 3.69
5174 7318 2.223618 CCTTGTTCGCTAGCTACTCCTC 60.224 54.545 13.93 0.00 0.00 3.71
5175 7319 1.390565 TGTTCGCTAGCTACTCCTCC 58.609 55.000 13.93 0.00 0.00 4.30
5176 7320 1.340697 TGTTCGCTAGCTACTCCTCCA 60.341 52.381 13.93 0.00 0.00 3.86
5177 7321 1.957877 GTTCGCTAGCTACTCCTCCAT 59.042 52.381 13.93 0.00 0.00 3.41
5178 7322 1.898902 TCGCTAGCTACTCCTCCATC 58.101 55.000 13.93 0.00 0.00 3.51
5179 7323 1.422024 TCGCTAGCTACTCCTCCATCT 59.578 52.381 13.93 0.00 0.00 2.90
5180 7324 1.810151 CGCTAGCTACTCCTCCATCTC 59.190 57.143 13.93 0.00 0.00 2.75
5181 7325 2.812243 CGCTAGCTACTCCTCCATCTCA 60.812 54.545 13.93 0.00 0.00 3.27
5182 7326 3.430453 GCTAGCTACTCCTCCATCTCAT 58.570 50.000 7.70 0.00 0.00 2.90
5183 7327 3.193267 GCTAGCTACTCCTCCATCTCATG 59.807 52.174 7.70 0.00 0.00 3.07
5184 7328 1.969923 AGCTACTCCTCCATCTCATGC 59.030 52.381 0.00 0.00 0.00 4.06
5185 7329 1.336702 GCTACTCCTCCATCTCATGCG 60.337 57.143 0.00 0.00 0.00 4.73
5186 7330 2.234143 CTACTCCTCCATCTCATGCGA 58.766 52.381 0.00 0.00 0.00 5.10
5187 7331 1.714541 ACTCCTCCATCTCATGCGAT 58.285 50.000 0.00 0.00 0.00 4.58
5188 7332 2.881734 ACTCCTCCATCTCATGCGATA 58.118 47.619 0.00 0.00 0.00 2.92
5189 7333 2.560542 ACTCCTCCATCTCATGCGATAC 59.439 50.000 0.00 0.00 0.00 2.24
5190 7334 2.560105 CTCCTCCATCTCATGCGATACA 59.440 50.000 0.00 0.00 0.00 2.29
5191 7335 2.297315 TCCTCCATCTCATGCGATACAC 59.703 50.000 0.00 0.00 0.00 2.90
5192 7336 2.323059 CTCCATCTCATGCGATACACG 58.677 52.381 0.00 0.00 45.66 4.49
5218 7362 4.365899 AAAACCCAGAGAACAAACGAAC 57.634 40.909 0.00 0.00 0.00 3.95
5219 7363 1.963172 ACCCAGAGAACAAACGAACC 58.037 50.000 0.00 0.00 0.00 3.62
5220 7364 0.865769 CCCAGAGAACAAACGAACCG 59.134 55.000 0.00 0.00 0.00 4.44
5221 7365 0.865769 CCAGAGAACAAACGAACCGG 59.134 55.000 0.00 0.00 0.00 5.28
5222 7366 1.578583 CAGAGAACAAACGAACCGGT 58.421 50.000 0.00 0.00 0.00 5.28
5223 7367 1.937899 CAGAGAACAAACGAACCGGTT 59.062 47.619 22.50 22.50 37.19 4.44
5224 7368 2.033151 CAGAGAACAAACGAACCGGTTC 60.033 50.000 33.18 33.18 33.19 3.62
5225 7369 1.935199 GAGAACAAACGAACCGGTTCA 59.065 47.619 38.72 0.00 41.49 3.18
5226 7370 2.352342 GAGAACAAACGAACCGGTTCAA 59.648 45.455 38.72 0.00 41.49 2.69
5227 7371 2.946990 AGAACAAACGAACCGGTTCAAT 59.053 40.909 38.72 26.92 41.49 2.57
5228 7372 2.766970 ACAAACGAACCGGTTCAATG 57.233 45.000 38.72 33.04 33.19 2.82
5229 7373 2.290464 ACAAACGAACCGGTTCAATGA 58.710 42.857 38.72 0.00 33.19 2.57
5230 7374 2.683867 ACAAACGAACCGGTTCAATGAA 59.316 40.909 38.72 0.00 33.19 2.57
5231 7375 3.040099 CAAACGAACCGGTTCAATGAAC 58.960 45.455 38.72 17.16 41.32 3.18
5241 7385 3.713826 GTTCAATGAACCTCTACCCCA 57.286 47.619 14.78 0.00 36.65 4.96
5242 7386 3.344515 GTTCAATGAACCTCTACCCCAC 58.655 50.000 14.78 0.00 36.65 4.61
5243 7387 1.553248 TCAATGAACCTCTACCCCACG 59.447 52.381 0.00 0.00 0.00 4.94
5244 7388 1.553248 CAATGAACCTCTACCCCACGA 59.447 52.381 0.00 0.00 0.00 4.35
5245 7389 2.170607 CAATGAACCTCTACCCCACGAT 59.829 50.000 0.00 0.00 0.00 3.73
5246 7390 1.481871 TGAACCTCTACCCCACGATC 58.518 55.000 0.00 0.00 0.00 3.69
5247 7391 0.751452 GAACCTCTACCCCACGATCC 59.249 60.000 0.00 0.00 0.00 3.36
5248 7392 1.041447 AACCTCTACCCCACGATCCG 61.041 60.000 0.00 0.00 0.00 4.18
5249 7393 2.201022 CCTCTACCCCACGATCCGG 61.201 68.421 0.00 0.00 0.00 5.14
5250 7394 1.455217 CTCTACCCCACGATCCGGT 60.455 63.158 0.00 0.00 0.00 5.28
5251 7395 0.179009 CTCTACCCCACGATCCGGTA 60.179 60.000 0.00 0.00 0.00 4.02
5252 7396 0.258484 TCTACCCCACGATCCGGTAA 59.742 55.000 0.00 0.00 31.84 2.85
5253 7397 0.386838 CTACCCCACGATCCGGTAAC 59.613 60.000 0.00 0.00 31.84 2.50
5254 7398 1.042559 TACCCCACGATCCGGTAACC 61.043 60.000 0.00 0.00 0.00 2.85
5255 7399 2.502577 CCCACGATCCGGTAACCC 59.497 66.667 0.00 0.00 0.00 4.11
5266 7410 1.880186 GGTAACCCGCACAACATGG 59.120 57.895 0.00 0.00 0.00 3.66
5267 7411 1.211709 GTAACCCGCACAACATGGC 59.788 57.895 0.00 0.00 0.00 4.40
5268 7412 1.228276 TAACCCGCACAACATGGCA 60.228 52.632 0.00 0.00 0.00 4.92
5269 7413 0.610509 TAACCCGCACAACATGGCAT 60.611 50.000 0.00 0.00 0.00 4.40
5270 7414 2.157305 AACCCGCACAACATGGCATG 62.157 55.000 25.31 25.31 0.00 4.06
5271 7415 2.507547 CCGCACAACATGGCATGC 60.508 61.111 26.70 9.90 34.66 4.06
5273 7417 2.567569 GCACAACATGGCATGCGA 59.432 55.556 26.70 8.58 0.00 5.10
5274 7418 1.080637 GCACAACATGGCATGCGAA 60.081 52.632 26.70 2.40 0.00 4.70
5275 7419 0.666880 GCACAACATGGCATGCGAAA 60.667 50.000 26.70 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.289380 GGAGGACTGTGTGACCGTC 59.711 63.158 0.00 0.00 35.66 4.79
1 2 2.207924 GGGAGGACTGTGTGACCGT 61.208 63.158 0.00 0.00 35.66 4.83
2 3 2.657237 GGGAGGACTGTGTGACCG 59.343 66.667 0.00 0.00 35.66 4.79
3 4 2.657237 CGGGAGGACTGTGTGACC 59.343 66.667 0.00 0.00 0.00 4.02
4 5 2.048127 GCGGGAGGACTGTGTGAC 60.048 66.667 0.00 0.00 0.00 3.67
5 6 3.311110 GGCGGGAGGACTGTGTGA 61.311 66.667 0.00 0.00 0.00 3.58
6 7 4.742201 CGGCGGGAGGACTGTGTG 62.742 72.222 0.00 0.00 0.00 3.82
23 24 3.589881 GCACCATCGGCATCCAGC 61.590 66.667 0.00 0.00 44.65 4.85
48 49 0.252881 ATGGGAAGAGCCACTCCTCA 60.253 55.000 0.00 0.00 38.95 3.86
61 62 0.616371 CAACGGTAGACCCATGGGAA 59.384 55.000 38.07 18.79 38.96 3.97
78 79 2.938451 CTCCATTGTCATAAGCGAGCAA 59.062 45.455 0.00 0.00 0.00 3.91
119 123 2.106683 CCATCGGGTTCTTGCCGAC 61.107 63.158 0.00 0.00 38.77 4.79
124 128 1.982073 GAAGCGCCATCGGGTTCTTG 61.982 60.000 2.29 0.00 38.50 3.02
127 131 3.564027 CGAAGCGCCATCGGGTTC 61.564 66.667 21.56 8.92 38.26 3.62
142 146 0.687757 ATTGCTCCAGCCCTACTCGA 60.688 55.000 0.00 0.00 41.18 4.04
145 149 0.835941 CTGATTGCTCCAGCCCTACT 59.164 55.000 0.00 0.00 41.18 2.57
154 158 0.872021 CCTCGTACGCTGATTGCTCC 60.872 60.000 11.24 0.00 40.11 4.70
160 164 1.516386 CAACGCCTCGTACGCTGAT 60.516 57.895 11.24 0.00 39.99 2.90
168 172 3.936203 TTGCCTCCAACGCCTCGT 61.936 61.111 0.00 0.00 43.97 4.18
199 203 2.282180 TTCAACTTGGCCGCCCTC 60.282 61.111 7.03 0.00 0.00 4.30
212 216 1.405526 GCGGTCATGCTACCTCTTCAA 60.406 52.381 2.39 0.00 37.39 2.69
230 234 2.398498 CACCATCTTCCGAATAGAGCG 58.602 52.381 0.00 0.00 0.00 5.03
235 239 1.507140 AGCCCACCATCTTCCGAATA 58.493 50.000 0.00 0.00 0.00 1.75
236 240 0.625849 AAGCCCACCATCTTCCGAAT 59.374 50.000 0.00 0.00 0.00 3.34
289 293 0.614979 TGAGGTGGGTAGTCAGAGCC 60.615 60.000 0.00 0.00 37.51 4.70
336 340 2.524640 TGGTCACCGGTGCTACCA 60.525 61.111 33.38 33.38 38.47 3.25
337 341 1.823169 TTCTGGTCACCGGTGCTACC 61.823 60.000 29.79 29.79 34.05 3.18
365 369 3.626924 ACCACTTTCTCGCCGGCT 61.627 61.111 26.68 0.00 0.00 5.52
375 379 1.139058 AGTGTCGAGCTTCACCACTTT 59.861 47.619 11.94 0.00 32.72 2.66
386 390 2.086054 ACATGGAAAGAGTGTCGAGC 57.914 50.000 0.00 0.00 0.00 5.03
398 402 7.222000 ACTAAAAGCGGAAATAAACATGGAA 57.778 32.000 0.00 0.00 0.00 3.53
453 457 8.027524 AGATCACCACAGTTCACATAATCTAT 57.972 34.615 0.00 0.00 0.00 1.98
455 459 6.305272 AGATCACCACAGTTCACATAATCT 57.695 37.500 0.00 0.00 0.00 2.40
456 460 6.992063 AAGATCACCACAGTTCACATAATC 57.008 37.500 0.00 0.00 0.00 1.75
462 466 7.078228 GTCATTAAAAGATCACCACAGTTCAC 58.922 38.462 0.00 0.00 0.00 3.18
483 487 5.068987 GCACATAACCCACATAATTGGTCAT 59.931 40.000 0.00 0.00 34.44 3.06
487 491 4.998671 TGCACATAACCCACATAATTGG 57.001 40.909 0.00 0.00 36.26 3.16
488 492 7.267128 AGAAATGCACATAACCCACATAATTG 58.733 34.615 0.00 0.00 0.00 2.32
489 493 7.422465 AGAAATGCACATAACCCACATAATT 57.578 32.000 0.00 0.00 0.00 1.40
490 494 8.579006 CATAGAAATGCACATAACCCACATAAT 58.421 33.333 0.00 0.00 0.00 1.28
495 500 5.221048 GGACATAGAAATGCACATAACCCAC 60.221 44.000 0.00 0.00 36.50 4.61
499 504 8.190122 TCAAATGGACATAGAAATGCACATAAC 58.810 33.333 0.00 0.00 36.50 1.89
502 507 6.778834 TCAAATGGACATAGAAATGCACAT 57.221 33.333 0.00 0.00 36.50 3.21
555 560 2.020720 CCCTATTTTGCGGTGCATGTA 58.979 47.619 0.00 0.00 38.76 2.29
556 561 0.817013 CCCTATTTTGCGGTGCATGT 59.183 50.000 0.00 0.00 38.76 3.21
567 572 3.946242 GGGCCATCCACCCTATTTT 57.054 52.632 4.39 0.00 44.68 1.82
603 608 1.263217 ACGTCGTTCCAACATTGAAGC 59.737 47.619 0.00 0.00 0.00 3.86
631 636 0.952010 GCCGACCAAAAGCGAAGGTA 60.952 55.000 0.00 0.00 37.06 3.08
636 641 0.886938 TTCATGCCGACCAAAAGCGA 60.887 50.000 0.00 0.00 0.00 4.93
637 642 0.171007 ATTCATGCCGACCAAAAGCG 59.829 50.000 0.00 0.00 0.00 4.68
685 690 4.574013 CCTCATCTGCACACTTTTCTATCC 59.426 45.833 0.00 0.00 0.00 2.59
687 692 5.426689 TCCTCATCTGCACACTTTTCTAT 57.573 39.130 0.00 0.00 0.00 1.98
688 693 4.890158 TCCTCATCTGCACACTTTTCTA 57.110 40.909 0.00 0.00 0.00 2.10
689 694 3.777106 TCCTCATCTGCACACTTTTCT 57.223 42.857 0.00 0.00 0.00 2.52
691 696 4.090761 TCTTCCTCATCTGCACACTTTT 57.909 40.909 0.00 0.00 0.00 2.27
700 705 4.226427 TCCAAACCATCTTCCTCATCTG 57.774 45.455 0.00 0.00 0.00 2.90
704 709 3.117888 GCCTATCCAAACCATCTTCCTCA 60.118 47.826 0.00 0.00 0.00 3.86
713 718 3.332485 ACAAACCTAGCCTATCCAAACCA 59.668 43.478 0.00 0.00 0.00 3.67
727 732 1.463056 CGCAAGCATTCGACAAACCTA 59.537 47.619 0.00 0.00 0.00 3.08
734 739 2.202349 GCCACGCAAGCATTCGAC 60.202 61.111 0.00 0.00 45.62 4.20
736 741 2.202388 CTGCCACGCAAGCATTCG 60.202 61.111 0.00 0.00 40.04 3.34
750 755 4.681978 AGACGTTCGGCCCACTGC 62.682 66.667 0.00 0.00 40.16 4.40
756 761 2.126031 GAGGTGAGACGTTCGGCC 60.126 66.667 0.00 0.00 0.00 6.13
757 762 2.126031 GGAGGTGAGACGTTCGGC 60.126 66.667 0.00 0.00 0.00 5.54
759 764 0.314302 AAGTGGAGGTGAGACGTTCG 59.686 55.000 0.00 0.00 0.00 3.95
787 792 1.205657 GCTCAATTGCCGCATTCATG 58.794 50.000 12.74 0.00 0.00 3.07
788 793 0.248743 CGCTCAATTGCCGCATTCAT 60.249 50.000 16.32 0.00 0.00 2.57
789 794 1.137194 CGCTCAATTGCCGCATTCA 59.863 52.632 16.32 0.00 0.00 2.57
790 795 1.587088 CCGCTCAATTGCCGCATTC 60.587 57.895 16.32 0.00 0.00 2.67
791 796 2.491152 CCGCTCAATTGCCGCATT 59.509 55.556 16.32 0.00 0.00 3.56
792 797 4.197498 GCCGCTCAATTGCCGCAT 62.197 61.111 16.32 0.00 37.20 4.73
796 801 4.842091 CAGCGCCGCTCAATTGCC 62.842 66.667 9.54 0.00 36.40 4.52
797 802 3.803082 TCAGCGCCGCTCAATTGC 61.803 61.111 9.54 0.00 36.40 3.56
798 803 2.099062 GTCAGCGCCGCTCAATTG 59.901 61.111 9.54 0.00 36.40 2.32
811 816 3.536158 TTTTTCATTCGAAGCGGTCAG 57.464 42.857 3.35 0.00 31.28 3.51
813 818 4.088496 CACAATTTTTCATTCGAAGCGGTC 59.912 41.667 3.35 0.00 31.28 4.79
815 820 3.980775 ACACAATTTTTCATTCGAAGCGG 59.019 39.130 3.35 0.00 31.28 5.52
816 821 6.077197 TCTACACAATTTTTCATTCGAAGCG 58.923 36.000 3.35 0.00 31.28 4.68
817 822 8.452989 AATCTACACAATTTTTCATTCGAAGC 57.547 30.769 3.35 0.00 31.28 3.86
820 825 8.572185 TCCAAATCTACACAATTTTTCATTCGA 58.428 29.630 0.00 0.00 0.00 3.71
833 838 9.559732 CAAACCTGATATATCCAAATCTACACA 57.440 33.333 10.25 0.00 0.00 3.72
834 839 8.507249 GCAAACCTGATATATCCAAATCTACAC 58.493 37.037 10.25 0.00 0.00 2.90
835 840 7.665559 GGCAAACCTGATATATCCAAATCTACA 59.334 37.037 10.25 0.00 0.00 2.74
838 843 5.707298 CGGCAAACCTGATATATCCAAATCT 59.293 40.000 10.25 0.00 0.00 2.40
839 844 5.705441 TCGGCAAACCTGATATATCCAAATC 59.295 40.000 10.25 0.00 0.00 2.17
840 845 5.630121 TCGGCAAACCTGATATATCCAAAT 58.370 37.500 10.25 0.00 0.00 2.32
841 846 5.042463 TCGGCAAACCTGATATATCCAAA 57.958 39.130 10.25 0.00 0.00 3.28
843 848 4.698201 TTCGGCAAACCTGATATATCCA 57.302 40.909 10.25 0.00 0.00 3.41
845 850 4.974591 GCATTCGGCAAACCTGATATATC 58.025 43.478 5.73 5.73 43.97 1.63
859 864 0.947244 CTCCCATACAAGCATTCGGC 59.053 55.000 0.00 0.00 45.30 5.54
861 866 1.942657 CCACTCCCATACAAGCATTCG 59.057 52.381 0.00 0.00 0.00 3.34
862 867 2.301346 CCCACTCCCATACAAGCATTC 58.699 52.381 0.00 0.00 0.00 2.67
866 871 1.453928 GCCCCACTCCCATACAAGC 60.454 63.158 0.00 0.00 0.00 4.01
870 875 1.153229 GTTCGCCCCACTCCCATAC 60.153 63.158 0.00 0.00 0.00 2.39
871 876 2.727392 CGTTCGCCCCACTCCCATA 61.727 63.158 0.00 0.00 0.00 2.74
883 888 4.700365 GGCTTTGTGGGCGTTCGC 62.700 66.667 8.75 8.75 0.00 4.70
884 889 4.038080 GGGCTTTGTGGGCGTTCG 62.038 66.667 0.00 0.00 0.00 3.95
885 890 2.022240 TTTGGGCTTTGTGGGCGTTC 62.022 55.000 0.00 0.00 0.00 3.95
886 891 1.617947 TTTTGGGCTTTGTGGGCGTT 61.618 50.000 0.00 0.00 0.00 4.84
887 892 1.406860 ATTTTGGGCTTTGTGGGCGT 61.407 50.000 0.00 0.00 0.00 5.68
888 893 0.950071 CATTTTGGGCTTTGTGGGCG 60.950 55.000 0.00 0.00 0.00 6.13
889 894 0.396060 TCATTTTGGGCTTTGTGGGC 59.604 50.000 0.00 0.00 0.00 5.36
891 896 2.038820 ACCATCATTTTGGGCTTTGTGG 59.961 45.455 0.00 0.00 41.35 4.17
902 1221 3.981071 TCTCCGACAGACCATCATTTT 57.019 42.857 0.00 0.00 0.00 1.82
903 1222 3.801698 CATCTCCGACAGACCATCATTT 58.198 45.455 0.00 0.00 32.26 2.32
904 1223 2.484417 GCATCTCCGACAGACCATCATT 60.484 50.000 0.00 0.00 32.26 2.57
905 1224 1.069823 GCATCTCCGACAGACCATCAT 59.930 52.381 0.00 0.00 32.26 2.45
907 1226 0.249657 GGCATCTCCGACAGACCATC 60.250 60.000 0.00 0.00 32.26 3.51
909 1228 2.359169 GGGCATCTCCGACAGACCA 61.359 63.158 0.00 0.00 32.26 4.02
910 1229 1.617947 AAGGGCATCTCCGACAGACC 61.618 60.000 0.00 0.00 32.26 3.85
914 1949 0.325296 AGGTAAGGGCATCTCCGACA 60.325 55.000 0.00 0.00 34.94 4.35
931 1966 4.561735 TTTAGACAAACGGCTGAAAAGG 57.438 40.909 0.00 0.00 0.00 3.11
953 1988 2.384828 AGACGGCTGAAAAGGGTTTTT 58.615 42.857 0.00 0.00 39.16 1.94
954 1989 2.067365 AGACGGCTGAAAAGGGTTTT 57.933 45.000 0.00 0.00 35.12 2.43
955 1990 1.954382 GAAGACGGCTGAAAAGGGTTT 59.046 47.619 0.00 0.00 0.00 3.27
956 1991 1.605753 GAAGACGGCTGAAAAGGGTT 58.394 50.000 0.00 0.00 0.00 4.11
957 1992 0.250770 GGAAGACGGCTGAAAAGGGT 60.251 55.000 0.00 0.00 0.00 4.34
958 1993 0.036875 AGGAAGACGGCTGAAAAGGG 59.963 55.000 0.00 0.00 0.00 3.95
1428 2501 6.482308 ACGATTAAGCTACCACATTATTCCAC 59.518 38.462 0.00 0.00 0.00 4.02
1492 2565 5.755375 CAGTTATGCTCCGAATGTATTGTCT 59.245 40.000 0.00 0.00 0.00 3.41
1521 2594 2.822561 TGATGCCAAAAGAACCGCATTA 59.177 40.909 0.00 0.00 41.85 1.90
1610 2686 5.616488 TGCATTCATCGTCATCCATAATG 57.384 39.130 0.00 0.00 36.65 1.90
1622 2698 5.514204 GGAGACAAAGAAATTGCATTCATCG 59.486 40.000 3.04 0.00 43.13 3.84
1625 2701 5.302568 ACAGGAGACAAAGAAATTGCATTCA 59.697 36.000 3.04 0.00 43.13 2.57
1626 2702 5.776744 ACAGGAGACAAAGAAATTGCATTC 58.223 37.500 0.00 0.00 43.13 2.67
1627 2703 5.796424 ACAGGAGACAAAGAAATTGCATT 57.204 34.783 0.00 0.00 43.13 3.56
1693 2769 3.706086 ACTGGCAGTTTCCAACAGAAAAT 59.294 39.130 15.88 0.00 45.93 1.82
1724 2800 7.040062 TCACCAACCCTTACTTTTCATATTGTG 60.040 37.037 0.00 0.00 0.00 3.33
1737 2813 7.881751 AGACTAATAAGTTTCACCAACCCTTAC 59.118 37.037 0.00 0.00 35.56 2.34
1790 2866 4.439305 CTGAACTCTTCTCAGTCTCAGG 57.561 50.000 0.00 0.00 36.38 3.86
1920 2996 8.637986 AGTCCAAGCTTAAACAATTTAACATGA 58.362 29.630 0.00 0.00 32.15 3.07
2012 3088 2.689553 TTCCATCGTGCAGCTATTCA 57.310 45.000 0.00 0.00 0.00 2.57
2043 3119 7.962995 ATACTAAACAGAGACAGGAAGATGA 57.037 36.000 0.00 0.00 0.00 2.92
2053 3129 8.644374 ATCTCCCTCATATACTAAACAGAGAC 57.356 38.462 0.00 0.00 30.13 3.36
2239 3398 6.127758 GCGATATATGGCCACCAAAATGAATA 60.128 38.462 8.16 0.00 36.95 1.75
2527 3686 0.250295 CCAAGGGAAGACGAGTGCAA 60.250 55.000 0.00 0.00 0.00 4.08
2875 4034 7.148918 CGCAAACAAAATTTGAGTTCTATGAGG 60.149 37.037 13.19 0.00 0.00 3.86
3051 5148 7.553044 GTGTATGTAAAGAATGCTACTCCCTTT 59.447 37.037 0.00 0.00 0.00 3.11
3052 5149 7.048512 GTGTATGTAAAGAATGCTACTCCCTT 58.951 38.462 0.00 0.00 0.00 3.95
3095 5192 6.490040 ACATTACAAGGACATGCTTAACAACT 59.510 34.615 0.00 0.00 0.00 3.16
3236 5346 5.924825 ACAACAGTCCTATCGTTGAAGTAAC 59.075 40.000 8.37 0.00 42.03 2.50
3340 5450 9.220767 CTCTTCTGGGCAAAATATATTACTACC 57.779 37.037 0.00 0.94 0.00 3.18
3460 5570 6.073058 AGCACAACATACAGAACATTACACAG 60.073 38.462 0.00 0.00 0.00 3.66
3464 5607 9.916397 GTTATAGCACAACATACAGAACATTAC 57.084 33.333 0.00 0.00 0.00 1.89
3470 5613 5.172205 TGCGTTATAGCACAACATACAGAA 58.828 37.500 0.00 0.00 42.92 3.02
3713 5856 6.020281 CGTGTAGATTTAGCTGTGACAAGATC 60.020 42.308 0.00 0.00 0.00 2.75
3755 5898 3.181455 GGAAGAATGTGGGCAAAACCTTT 60.181 43.478 0.00 0.00 39.10 3.11
3876 6019 5.428253 GCAGTAACCAAGTCAGGATCATAA 58.572 41.667 0.00 0.00 0.00 1.90
3999 6142 4.756642 AGCGACATCAAAGTTTTCAGATCA 59.243 37.500 0.00 0.00 0.00 2.92
4252 6395 1.539280 GGCAGTAGATTTCTCCGGAGC 60.539 57.143 27.39 12.69 0.00 4.70
4298 6441 6.840780 AGATAGTTGATTGTTCAAAAGGGG 57.159 37.500 0.00 0.00 43.29 4.79
5091 7235 0.381089 ATCACGACGTTCGATCCTCC 59.619 55.000 13.06 0.00 43.74 4.30
5092 7236 1.467875 CATCACGACGTTCGATCCTC 58.532 55.000 13.06 0.00 43.74 3.71
5093 7237 0.100682 CCATCACGACGTTCGATCCT 59.899 55.000 13.06 0.00 43.74 3.24
5094 7238 0.179145 ACCATCACGACGTTCGATCC 60.179 55.000 13.06 0.00 43.74 3.36
5095 7239 1.582502 GAACCATCACGACGTTCGATC 59.417 52.381 13.06 0.00 43.74 3.69
5096 7240 1.625616 GAACCATCACGACGTTCGAT 58.374 50.000 13.06 0.00 43.74 3.59
5097 7241 3.096541 GAACCATCACGACGTTCGA 57.903 52.632 13.06 0.00 43.74 3.71
5099 7243 0.706729 GTCGAACCATCACGACGTTC 59.293 55.000 0.00 0.00 46.39 3.95
5100 7244 2.805277 GTCGAACCATCACGACGTT 58.195 52.632 0.00 0.00 46.39 3.99
5101 7245 4.546637 GTCGAACCATCACGACGT 57.453 55.556 0.00 0.00 46.39 4.34
5104 7248 0.956902 TCGAGGTCGAACCATCACGA 60.957 55.000 0.00 0.00 46.30 4.35
5105 7249 1.504900 TCGAGGTCGAACCATCACG 59.495 57.895 0.00 0.00 46.30 4.35
5115 7259 4.570663 GGTGCGGGATCGAGGTCG 62.571 72.222 0.00 0.00 39.00 4.79
5116 7260 4.570663 CGGTGCGGGATCGAGGTC 62.571 72.222 0.00 0.00 39.00 3.85
5120 7264 4.807631 TCCTCGGTGCGGGATCGA 62.808 66.667 4.45 4.45 39.00 3.59
5121 7265 2.644555 ATTTCCTCGGTGCGGGATCG 62.645 60.000 0.00 0.00 39.81 3.69
5122 7266 0.880718 GATTTCCTCGGTGCGGGATC 60.881 60.000 0.00 0.00 0.00 3.36
5123 7267 1.146263 GATTTCCTCGGTGCGGGAT 59.854 57.895 0.00 0.00 0.00 3.85
5124 7268 2.582436 GATTTCCTCGGTGCGGGA 59.418 61.111 0.00 0.00 0.00 5.14
5125 7269 2.890474 CGATTTCCTCGGTGCGGG 60.890 66.667 0.00 0.00 43.82 6.13
5133 7277 2.614520 GGCTTTTCCTAGCGATTTCCTC 59.385 50.000 0.00 0.00 42.15 3.71
5134 7278 2.239907 AGGCTTTTCCTAGCGATTTCCT 59.760 45.455 0.00 0.00 45.41 3.36
5135 7279 2.644676 AGGCTTTTCCTAGCGATTTCC 58.355 47.619 0.00 0.00 45.41 3.13
5136 7280 3.440522 ACAAGGCTTTTCCTAGCGATTTC 59.559 43.478 0.00 0.00 46.94 2.17
5137 7281 3.421844 ACAAGGCTTTTCCTAGCGATTT 58.578 40.909 0.00 0.00 46.94 2.17
5138 7282 3.073274 ACAAGGCTTTTCCTAGCGATT 57.927 42.857 0.00 0.00 46.94 3.34
5139 7283 2.789409 ACAAGGCTTTTCCTAGCGAT 57.211 45.000 0.00 0.00 46.94 4.58
5140 7284 2.423577 GAACAAGGCTTTTCCTAGCGA 58.576 47.619 0.00 0.00 46.94 4.93
5141 7285 1.128692 CGAACAAGGCTTTTCCTAGCG 59.871 52.381 0.00 0.00 46.94 4.26
5142 7286 1.135660 GCGAACAAGGCTTTTCCTAGC 60.136 52.381 0.00 1.70 46.94 3.42
5143 7287 2.427506 AGCGAACAAGGCTTTTCCTAG 58.572 47.619 0.00 0.00 46.94 3.02
5144 7288 2.561478 AGCGAACAAGGCTTTTCCTA 57.439 45.000 0.00 0.00 46.94 2.94
5146 7290 1.135660 GCTAGCGAACAAGGCTTTTCC 60.136 52.381 0.00 0.90 41.80 3.13
5147 7291 1.807142 AGCTAGCGAACAAGGCTTTTC 59.193 47.619 9.55 4.67 41.80 2.29
5148 7292 1.897560 AGCTAGCGAACAAGGCTTTT 58.102 45.000 9.55 0.00 41.80 2.27
5149 7293 2.028020 AGTAGCTAGCGAACAAGGCTTT 60.028 45.455 20.76 0.00 41.80 3.51
5150 7294 1.550976 AGTAGCTAGCGAACAAGGCTT 59.449 47.619 20.76 0.00 41.80 4.35
5151 7295 1.135333 GAGTAGCTAGCGAACAAGGCT 59.865 52.381 20.76 4.85 44.35 4.58
5152 7296 1.562017 GAGTAGCTAGCGAACAAGGC 58.438 55.000 20.76 7.49 0.00 4.35
5153 7297 1.751924 AGGAGTAGCTAGCGAACAAGG 59.248 52.381 20.76 0.00 0.00 3.61
5154 7298 2.223618 GGAGGAGTAGCTAGCGAACAAG 60.224 54.545 20.76 0.00 0.00 3.16
5155 7299 1.749634 GGAGGAGTAGCTAGCGAACAA 59.250 52.381 20.76 0.36 0.00 2.83
5156 7300 1.340697 TGGAGGAGTAGCTAGCGAACA 60.341 52.381 20.76 6.84 0.00 3.18
5157 7301 1.390565 TGGAGGAGTAGCTAGCGAAC 58.609 55.000 9.55 11.92 0.00 3.95
5158 7302 2.158593 AGATGGAGGAGTAGCTAGCGAA 60.159 50.000 9.55 0.00 0.00 4.70
5159 7303 1.422024 AGATGGAGGAGTAGCTAGCGA 59.578 52.381 9.55 0.00 0.00 4.93
5160 7304 1.810151 GAGATGGAGGAGTAGCTAGCG 59.190 57.143 9.55 0.00 0.00 4.26
5161 7305 2.870175 TGAGATGGAGGAGTAGCTAGC 58.130 52.381 6.62 6.62 0.00 3.42
5162 7306 3.193267 GCATGAGATGGAGGAGTAGCTAG 59.807 52.174 0.00 0.00 0.00 3.42
5163 7307 3.161067 GCATGAGATGGAGGAGTAGCTA 58.839 50.000 0.00 0.00 0.00 3.32
5164 7308 1.969923 GCATGAGATGGAGGAGTAGCT 59.030 52.381 0.00 0.00 0.00 3.32
5165 7309 1.336702 CGCATGAGATGGAGGAGTAGC 60.337 57.143 0.00 0.00 0.00 3.58
5166 7310 2.234143 TCGCATGAGATGGAGGAGTAG 58.766 52.381 0.00 0.00 0.00 2.57
5167 7311 2.364972 TCGCATGAGATGGAGGAGTA 57.635 50.000 0.00 0.00 0.00 2.59
5168 7312 1.714541 ATCGCATGAGATGGAGGAGT 58.285 50.000 11.46 0.00 0.00 3.85
5169 7313 2.560105 TGTATCGCATGAGATGGAGGAG 59.440 50.000 20.73 0.00 32.39 3.69
5170 7314 2.297315 GTGTATCGCATGAGATGGAGGA 59.703 50.000 20.73 0.00 32.39 3.71
5171 7315 2.681706 GTGTATCGCATGAGATGGAGG 58.318 52.381 20.73 0.00 32.39 4.30
5172 7316 2.323059 CGTGTATCGCATGAGATGGAG 58.677 52.381 20.73 6.86 36.21 3.86
5173 7317 2.422276 CGTGTATCGCATGAGATGGA 57.578 50.000 20.73 5.31 36.21 3.41
5196 7340 4.381185 GGTTCGTTTGTTCTCTGGGTTTTT 60.381 41.667 0.00 0.00 0.00 1.94
5197 7341 3.129813 GGTTCGTTTGTTCTCTGGGTTTT 59.870 43.478 0.00 0.00 0.00 2.43
5198 7342 2.686405 GGTTCGTTTGTTCTCTGGGTTT 59.314 45.455 0.00 0.00 0.00 3.27
5199 7343 2.294979 GGTTCGTTTGTTCTCTGGGTT 58.705 47.619 0.00 0.00 0.00 4.11
5200 7344 1.808891 CGGTTCGTTTGTTCTCTGGGT 60.809 52.381 0.00 0.00 0.00 4.51
5201 7345 0.865769 CGGTTCGTTTGTTCTCTGGG 59.134 55.000 0.00 0.00 0.00 4.45
5202 7346 0.865769 CCGGTTCGTTTGTTCTCTGG 59.134 55.000 0.00 0.00 0.00 3.86
5203 7347 1.578583 ACCGGTTCGTTTGTTCTCTG 58.421 50.000 0.00 0.00 0.00 3.35
5204 7348 2.207590 GAACCGGTTCGTTTGTTCTCT 58.792 47.619 30.33 0.00 35.40 3.10
5205 7349 1.935199 TGAACCGGTTCGTTTGTTCTC 59.065 47.619 35.42 14.77 42.28 2.87
5206 7350 2.027003 TGAACCGGTTCGTTTGTTCT 57.973 45.000 35.42 5.24 42.28 3.01
5207 7351 2.828874 TTGAACCGGTTCGTTTGTTC 57.171 45.000 35.42 16.18 42.28 3.18
5208 7352 2.683867 TCATTGAACCGGTTCGTTTGTT 59.316 40.909 35.42 17.30 42.28 2.83
5209 7353 2.290464 TCATTGAACCGGTTCGTTTGT 58.710 42.857 35.42 19.69 42.28 2.83
5210 7354 3.040099 GTTCATTGAACCGGTTCGTTTG 58.960 45.455 35.42 30.17 42.28 2.93
5211 7355 3.343380 GTTCATTGAACCGGTTCGTTT 57.657 42.857 35.42 22.68 42.28 3.60
5221 7365 3.344515 GTGGGGTAGAGGTTCATTGAAC 58.655 50.000 19.17 19.17 41.32 3.18
5222 7366 2.027561 CGTGGGGTAGAGGTTCATTGAA 60.028 50.000 0.00 0.00 0.00 2.69
5223 7367 1.553248 CGTGGGGTAGAGGTTCATTGA 59.447 52.381 0.00 0.00 0.00 2.57
5224 7368 1.553248 TCGTGGGGTAGAGGTTCATTG 59.447 52.381 0.00 0.00 0.00 2.82
5225 7369 1.946984 TCGTGGGGTAGAGGTTCATT 58.053 50.000 0.00 0.00 0.00 2.57
5226 7370 2.040178 GATCGTGGGGTAGAGGTTCAT 58.960 52.381 0.00 0.00 0.00 2.57
5227 7371 1.481871 GATCGTGGGGTAGAGGTTCA 58.518 55.000 0.00 0.00 0.00 3.18
5228 7372 0.751452 GGATCGTGGGGTAGAGGTTC 59.249 60.000 0.00 0.00 0.00 3.62
5229 7373 1.041447 CGGATCGTGGGGTAGAGGTT 61.041 60.000 0.00 0.00 0.00 3.50
5230 7374 1.455217 CGGATCGTGGGGTAGAGGT 60.455 63.158 0.00 0.00 0.00 3.85
5231 7375 2.201022 CCGGATCGTGGGGTAGAGG 61.201 68.421 0.00 0.00 0.00 3.69
5232 7376 0.179009 TACCGGATCGTGGGGTAGAG 60.179 60.000 9.46 0.00 35.28 2.43
5233 7377 0.258484 TTACCGGATCGTGGGGTAGA 59.742 55.000 9.46 0.00 37.58 2.59
5234 7378 0.386838 GTTACCGGATCGTGGGGTAG 59.613 60.000 9.46 0.00 37.58 3.18
5235 7379 1.042559 GGTTACCGGATCGTGGGGTA 61.043 60.000 9.46 4.03 35.28 3.69
5236 7380 2.361567 GGTTACCGGATCGTGGGGT 61.362 63.158 9.46 4.91 37.84 4.95
5237 7381 2.502577 GGTTACCGGATCGTGGGG 59.497 66.667 9.46 0.00 0.00 4.96
5238 7382 2.502577 GGGTTACCGGATCGTGGG 59.497 66.667 9.46 1.54 0.00 4.61
5248 7392 1.880186 CCATGTTGTGCGGGTTACC 59.120 57.895 0.00 0.00 0.00 2.85
5249 7393 1.211709 GCCATGTTGTGCGGGTTAC 59.788 57.895 0.00 0.00 0.00 2.50
5250 7394 0.610509 ATGCCATGTTGTGCGGGTTA 60.611 50.000 0.00 0.00 0.00 2.85
5251 7395 1.907807 ATGCCATGTTGTGCGGGTT 60.908 52.632 0.00 0.00 0.00 4.11
5252 7396 2.283101 ATGCCATGTTGTGCGGGT 60.283 55.556 0.00 0.00 0.00 5.28
5253 7397 2.182284 CATGCCATGTTGTGCGGG 59.818 61.111 0.00 0.00 0.00 6.13
5254 7398 2.507547 GCATGCCATGTTGTGCGG 60.508 61.111 6.36 0.00 0.00 5.69
5256 7400 0.666880 TTTCGCATGCCATGTTGTGC 60.667 50.000 13.15 0.00 0.00 4.57
5257 7401 3.493351 TTTCGCATGCCATGTTGTG 57.507 47.368 13.15 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.