AutoCloner

Multiple sequence alignment - TraesCS6A01G295500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G295500	chr6A	100.000	2507	0	0	1	2507	529049479	529046973	0.000000e+00	4630.0
1	TraesCS6A01G295500	chr6A	87.805	82	7	3	307	387	64260709	64260788	2.660000e-15	93.5
2	TraesCS6A01G295500	chr6D	92.809	1335	67	16	297	1621	384535093	384533778	0.000000e+00	1906.0
3	TraesCS6A01G295500	chr6D	91.587	630	32	9	301	928	384552293	384551683	0.000000e+00	850.0
4	TraesCS6A01G295500	chr6D	91.176	204	15	3	9	210	384548338	384548136	8.830000e-70	274.0
5	TraesCS6A01G295500	chr6D	100.000	31	0	0	223	253	384548136	384548106	9.690000e-05	58.4
6	TraesCS6A01G295500	chr7A	96.501	886	30	1	1623	2507	592084446	592085331	0.000000e+00	1463.0
7	TraesCS6A01G295500	chr2B	96.085	894	34	1	1615	2507	534232522	534231629	0.000000e+00	1456.0
8	TraesCS6A01G295500	chr2B	95.147	886	42	1	1623	2507	231628956	231628071	0.000000e+00	1397.0
9	TraesCS6A01G295500	chr1A	96.384	885	31	1	1624	2507	551055825	551056709	0.000000e+00	1456.0
10	TraesCS6A01G295500	chr1A	89.655	58	5	1	309	366	391948077	391948133	3.460000e-09	73.1
11	TraesCS6A01G295500	chr6B	93.827	891	48	2	1624	2507	545259811	545260701	0.000000e+00	1334.0
12	TraesCS6A01G295500	chr6B	97.196	642	18	0	980	1621	574736344	574735703	0.000000e+00	1086.0
13	TraesCS6A01G295500	chr6B	96.216	555	19	2	1621	2174	96230490	96229937	0.000000e+00	907.0
14	TraesCS6A01G295500	chr6B	85.516	863	56	26	136	983	574737186	574736378	0.000000e+00	837.0
15	TraesCS6A01G295500	chr6B	91.729	133	8	3	9	139	574737874	574737743	5.510000e-42	182.0
16	TraesCS6A01G295500	chr3B	95.203	813	38	1	1625	2436	829494614	829493802	0.000000e+00	1284.0
17	TraesCS6A01G295500	chr7D	92.865	883	54	3	1624	2505	106615677	106616551	0.000000e+00	1273.0
18	TraesCS6A01G295500	chr7D	92.857	56	3	1	23	78	590218587	590218641	2.070000e-11	80.5
19	TraesCS6A01G295500	chr4A	94.983	598	29	1	1620	2216	737178493	737177896	0.000000e+00	937.0
20	TraesCS6A01G295500	chrUn	95.714	560	23	1	1622	2180	420215100	420215659	0.000000e+00	900.0
21	TraesCS6A01G295500	chrUn	95.706	326	14	0	2182	2507	456124076	456124401	2.210000e-145	525.0
22	TraesCS6A01G295500	chrUn	94.340	53	3	0	314	366	39577840	39577892	5.750000e-12	82.4
23	TraesCS6A01G295500	chr5A	93.860	570	34	1	1938	2507	473611211	473610643	0.000000e+00	857.0
24	TraesCS6A01G295500	chr5A	86.567	67	7	2	1424	1489	330964462	330964527	3.460000e-09	73.1
25	TraesCS6A01G295500	chr4D	88.333	240	21	7	450	685	51076103	51076339	5.280000e-72	281.0
26	TraesCS6A01G295500	chr5B	86.905	252	28	5	439	689	711293563	711293810	6.830000e-71	278.0
27	TraesCS6A01G295500	chr5B	88.060	67	6	2	1424	1489	281644316	281644251	7.430000e-11	78.7
28	TraesCS6A01G295500	chr1D	87.342	237	26	3	450	685	464601404	464601171	4.110000e-68	268.0
29	TraesCS6A01G295500	chr5D	86.166	253	28	7	439	689	561631837	561632084	1.480000e-67	267.0
30	TraesCS6A01G295500	chr5D	85.887	248	32	3	451	697	44623216	44622971	6.880000e-66	261.0
31	TraesCS6A01G295500	chr5D	86.567	67	7	2	1424	1489	246766777	246766842	3.460000e-09	73.1
32	TraesCS6A01G295500	chr5D	97.368	38	1	0	41	78	407818333	407818370	5.790000e-07	65.8
33	TraesCS6A01G295500	chr5D	86.207	58	6	2	23	79	530608302	530608358	7.490000e-06	62.1
34	TraesCS6A01G295500	chr4B	86.722	241	29	3	446	685	447455224	447455462	5.320000e-67	265.0
35	TraesCS6A01G295500	chr1B	86.364	242	28	3	445	682	433422810	433423050	2.470000e-65	259.0
36	TraesCS6A01G295500	chr3D	88.406	69	6	2	299	366	48850986	48851053	5.750000e-12	82.4
37	TraesCS6A01G295500	chr3A	94.340	53	3	0	314	366	61318494	61318546	5.750000e-12	82.4
38	TraesCS6A01G295500	chr2A	88.889	63	5	2	302	364	86446964	86446904	2.670000e-10	76.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G295500	chr6A	529046973	529049479	2506	True	4630.000000	4630	100.000000	1	2507	1	chr6A.!!$R1	2506
1	TraesCS6A01G295500	chr6D	384533778	384535093	1315	True	1906.000000	1906	92.809000	297	1621	1	chr6D.!!$R1	1324
2	TraesCS6A01G295500	chr6D	384548106	384552293	4187	True	394.133333	850	94.254333	9	928	3	chr6D.!!$R2	919
3	TraesCS6A01G295500	chr7A	592084446	592085331	885	False	1463.000000	1463	96.501000	1623	2507	1	chr7A.!!$F1	884
4	TraesCS6A01G295500	chr2B	534231629	534232522	893	True	1456.000000	1456	96.085000	1615	2507	1	chr2B.!!$R2	892
5	TraesCS6A01G295500	chr2B	231628071	231628956	885	True	1397.000000	1397	95.147000	1623	2507	1	chr2B.!!$R1	884
6	TraesCS6A01G295500	chr1A	551055825	551056709	884	False	1456.000000	1456	96.384000	1624	2507	1	chr1A.!!$F2	883
7	TraesCS6A01G295500	chr6B	545259811	545260701	890	False	1334.000000	1334	93.827000	1624	2507	1	chr6B.!!$F1	883
8	TraesCS6A01G295500	chr6B	96229937	96230490	553	True	907.000000	907	96.216000	1621	2174	1	chr6B.!!$R1	553
9	TraesCS6A01G295500	chr6B	574735703	574737874	2171	True	701.666667	1086	91.480333	9	1621	3	chr6B.!!$R2	1612
10	TraesCS6A01G295500	chr3B	829493802	829494614	812	True	1284.000000	1284	95.203000	1625	2436	1	chr3B.!!$R1	811
11	TraesCS6A01G295500	chr7D	106615677	106616551	874	False	1273.000000	1273	92.865000	1624	2505	1	chr7D.!!$F1	881
12	TraesCS6A01G295500	chr4A	737177896	737178493	597	True	937.000000	937	94.983000	1620	2216	1	chr4A.!!$R1	596
13	TraesCS6A01G295500	chrUn	420215100	420215659	559	False	900.000000	900	95.714000	1622	2180	1	chrUn.!!$F2	558
14	TraesCS6A01G295500	chr5A	473610643	473611211	568	True	857.000000	857	93.860000	1938	2507	1	chr5A.!!$R1	569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
956	1567	0.702316	GCTTAAACCCTCTCCCCCAA	59.298	55.0	0.0	0.0	0.0	4.12	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1926	2801	1.072266	AGTGGGGTGCAGGAATGTTA	58.928	50.0	0.0	0.0	0.0	2.41	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
53	54	4.743644	ACTAGTGTACTGTCAAAAACGCTC	59.256	41.667	0.00	0.00	34.68	5.03
54	55	3.527533	AGTGTACTGTCAAAAACGCTCA	58.472	40.909	0.00	0.00	0.00	4.26
56	57	5.294356	AGTGTACTGTCAAAAACGCTCATA	58.706	37.500	0.00	0.00	0.00	2.15
71	72	6.166984	ACGCTCATATATTATGGGATGGAG	57.833	41.667	0.00	0.00	0.00	3.86
153	716	9.657419	ATTATGCTTAGAAAATGAAGTTTTGGG	57.343	29.630	0.00	0.00	40.04	4.12
198	762	4.440839	GGTTAGCCCACTGAATTTCTTG	57.559	45.455	0.00	0.00	0.00	3.02
199	763	4.079253	GGTTAGCCCACTGAATTTCTTGA	58.921	43.478	0.00	0.00	0.00	3.02
211	775	7.390440	CACTGAATTTCTTGAGGGTGTACAATA	59.610	37.037	0.00	0.00	0.00	1.90
218	782	7.247456	TCTTGAGGGTGTACAATATAACACA	57.753	36.000	14.38	0.28	46.22	3.72
279	843	0.955905	GGACTAAACGGCAAGGCAAA	59.044	50.000	0.00	0.00	0.00	3.68
281	845	1.607148	GACTAAACGGCAAGGCAAAGT	59.393	47.619	0.00	0.00	0.00	2.66
287	851	2.427410	GCAAGGCAAAGTGCGTCG	60.427	61.111	0.00	0.00	46.21	5.12
291	855	1.498865	AAGGCAAAGTGCGTCGTCTG	61.499	55.000	0.00	0.00	46.21	3.51
292	856	2.127609	GCAAAGTGCGTCGTCTGC	60.128	61.111	0.00	0.00	31.71	4.26
488	1053	3.312421	CGTCCGGATTTAAGCATGTCATT	59.688	43.478	7.81	0.00	0.00	2.57
500	1065	2.908626	GCATGTCATTCCGAACGTTTTC	59.091	45.455	0.46	0.00	0.00	2.29
569	1134	1.859302	TGGCAACTTTGTCCCAGTTT	58.141	45.000	0.00	0.00	31.83	2.66
570	1135	1.480137	TGGCAACTTTGTCCCAGTTTG	59.520	47.619	0.00	0.00	31.83	2.93
572	1137	1.480545	GCAACTTTGTCCCAGTTTGGT	59.519	47.619	0.00	0.00	35.17	3.67
573	1138	2.093711	GCAACTTTGTCCCAGTTTGGTT	60.094	45.455	0.00	0.00	35.17	3.67
634	1209	7.167468	GCGTGAACTAAAGTTGTCATGAAAAAT	59.833	33.333	0.00	0.00	38.56	1.82
671	1246	8.231837	CCATGCTTTAAAATTCAAACATTCAGG	58.768	33.333	0.00	0.00	0.00	3.86
689	1264	9.880157	ACATTCAGGATTTATCATTTCCAAAAG	57.120	29.630	0.00	0.00	31.65	2.27
743	1320	4.823790	AAAATCCACTACGCGTCTTTTT	57.176	36.364	18.63	10.99	0.00	1.94
927	1538	1.896465	GCGGTTGAGAGAGCCCTATAT	59.104	52.381	0.00	0.00	0.00	0.86
928	1539	3.090037	GCGGTTGAGAGAGCCCTATATA	58.910	50.000	0.00	0.00	0.00	0.86
929	1540	3.702045	GCGGTTGAGAGAGCCCTATATAT	59.298	47.826	0.00	0.00	0.00	0.86
930	1541	4.888239	GCGGTTGAGAGAGCCCTATATATA	59.112	45.833	0.00	0.00	0.00	0.86
931	1542	5.360144	GCGGTTGAGAGAGCCCTATATATAA	59.640	44.000	0.00	0.00	0.00	0.98
932	1543	6.460399	GCGGTTGAGAGAGCCCTATATATAAG	60.460	46.154	0.00	0.00	0.00	1.73
933	1544	6.829298	CGGTTGAGAGAGCCCTATATATAAGA	59.171	42.308	0.00	0.00	0.00	2.10
934	1545	7.201750	CGGTTGAGAGAGCCCTATATATAAGAC	60.202	44.444	0.00	0.00	0.00	3.01
935	1546	7.201750	GGTTGAGAGAGCCCTATATATAAGACG	60.202	44.444	0.00	0.00	0.00	4.18
936	1547	6.358178	TGAGAGAGCCCTATATATAAGACGG	58.642	44.000	0.00	0.00	0.00	4.79
937	1548	5.697067	AGAGAGCCCTATATATAAGACGGG	58.303	45.833	9.50	9.50	34.79	5.28
945	1556	7.270779	CCCTATATATAAGACGGGCTTAAACC	58.729	42.308	7.51	0.00	42.10	3.27
954	1565	1.613610	GGCTTAAACCCTCTCCCCC	59.386	63.158	0.00	0.00	0.00	5.40
955	1566	1.212250	GGCTTAAACCCTCTCCCCCA	61.212	60.000	0.00	0.00	0.00	4.96
956	1567	0.702316	GCTTAAACCCTCTCCCCCAA	59.298	55.000	0.00	0.00	0.00	4.12
964	1575	1.214305	CCTCTCCCCCAATCCACCAA	61.214	60.000	0.00	0.00	0.00	3.67
970	1581	1.989508	CCCAATCCACCAAAGCCCC	60.990	63.158	0.00	0.00	0.00	5.80
1011	1659	1.097547	CGATCACCATGGGTCAAGCC	61.098	60.000	18.09	0.00	31.02	4.35
1092	1740	3.376918	GCCCCTCCAGCAGCAAAC	61.377	66.667	0.00	0.00	0.00	2.93
1726	2572	6.567602	AGAAGGCATCTAATCTAACCACTT	57.432	37.500	0.00	0.00	36.32	3.16
1877	2752	5.745227	CTGAGTAGGGGCTTCAAATTTCTA	58.255	41.667	0.00	0.00	0.00	2.10
1926	2801	7.655328	CAGTTCTTCACAGTCTGATTCTACTTT	59.345	37.037	6.91	0.00	0.00	2.66
1955	3057	1.933115	GCACCCCACTGCATAAACCG	61.933	60.000	0.00	0.00	37.11	4.44
2288	5271	1.162181	CCAGATGTACCATGCGCCAG	61.162	60.000	4.18	0.00	0.00	4.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
39	40	8.017373	CCCATAATATATGAGCGTTTTTGACAG	58.983	37.037	0.00	0.00	0.00	3.51
53	54	8.748179	ATACTCCCTCCATCCCATAATATATG	57.252	38.462	0.00	0.00	0.00	1.78
54	55	9.764776	AAATACTCCCTCCATCCCATAATATAT	57.235	33.333	0.00	0.00	0.00	0.86
56	57	8.482378	AAAATACTCCCTCCATCCCATAATAT	57.518	34.615	0.00	0.00	0.00	1.28
143	706	5.422012	ACAATCCATGGTATCCCAAAACTTC	59.578	40.000	12.58	0.00	46.04	3.01
153	716	7.233348	ACCCATCAAAATACAATCCATGGTATC	59.767	37.037	12.58	0.00	30.23	2.24
197	761	6.361768	TGTGTGTTATATTGTACACCCTCA	57.638	37.500	0.00	7.02	43.04	3.86
198	762	8.823818	GTTATGTGTGTTATATTGTACACCCTC	58.176	37.037	0.00	5.34	43.04	4.30
199	763	8.322828	TGTTATGTGTGTTATATTGTACACCCT	58.677	33.333	0.00	0.00	43.04	4.34
218	782	6.239317	GGGCCTTTTCTTTTCTTCTGTTATGT	60.239	38.462	0.84	0.00	0.00	2.29
222	786	4.030216	TGGGCCTTTTCTTTTCTTCTGTT	58.970	39.130	4.53	0.00	0.00	3.16
279	843	0.169230	CTAGAAGCAGACGACGCACT	59.831	55.000	0.00	0.00	0.00	4.40
281	845	1.154016	GCTAGAAGCAGACGACGCA	60.154	57.895	0.00	0.00	41.89	5.24
291	855	5.064834	GGTAACAAGGTTGTATGCTAGAAGC	59.935	44.000	0.00	0.00	41.31	3.86
292	856	6.663944	GGTAACAAGGTTGTATGCTAGAAG	57.336	41.667	0.00	0.00	41.31	2.85
377	942	8.438676	AATTCTGAAAATAATGTACTCCCTCG	57.561	34.615	0.00	0.00	0.00	4.63
488	1053	1.153353	GCCATGAGAAAACGTTCGGA	58.847	50.000	0.00	0.00	38.90	4.55
500	1065	3.191371	GGGTCAACTAAACTTGCCATGAG	59.809	47.826	0.00	0.00	0.00	2.90
592	1159	1.153647	CGCGAGGTTGGCAGACATA	60.154	57.895	0.00	0.00	0.00	2.29
597	1164	2.664851	TTCACGCGAGGTTGGCAG	60.665	61.111	15.93	0.00	0.00	4.85
634	1209	1.255882	AAAGCATGGCAATCCGAACA	58.744	45.000	0.00	0.00	34.14	3.18
683	1258	5.740569	CAGCGTATTGATGATTGACTTTTGG	59.259	40.000	0.00	0.00	35.47	3.28
689	1264	3.950087	TGCAGCGTATTGATGATTGAC	57.050	42.857	0.00	0.00	35.47	3.18
743	1320	4.878397	ACGCAATCCAAACAATTCCAAAAA	59.122	33.333	0.00	0.00	0.00	1.94
744	1321	4.446371	ACGCAATCCAAACAATTCCAAAA	58.554	34.783	0.00	0.00	0.00	2.44
745	1322	4.065321	ACGCAATCCAAACAATTCCAAA	57.935	36.364	0.00	0.00	0.00	3.28
746	1323	3.742433	ACGCAATCCAAACAATTCCAA	57.258	38.095	0.00	0.00	0.00	3.53
747	1324	3.742433	AACGCAATCCAAACAATTCCA	57.258	38.095	0.00	0.00	0.00	3.53
748	1325	3.807071	ACAAACGCAATCCAAACAATTCC	59.193	39.130	0.00	0.00	0.00	3.01
749	1326	4.318689	CCACAAACGCAATCCAAACAATTC	60.319	41.667	0.00	0.00	0.00	2.17
750	1327	3.559242	CCACAAACGCAATCCAAACAATT	59.441	39.130	0.00	0.00	0.00	2.32
751	1328	3.129871	CCACAAACGCAATCCAAACAAT	58.870	40.909	0.00	0.00	0.00	2.71
752	1329	2.544685	CCACAAACGCAATCCAAACAA	58.455	42.857	0.00	0.00	0.00	2.83
753	1330	1.804372	GCCACAAACGCAATCCAAACA	60.804	47.619	0.00	0.00	0.00	2.83
754	1331	0.858583	GCCACAAACGCAATCCAAAC	59.141	50.000	0.00	0.00	0.00	2.93
755	1332	0.461548	TGCCACAAACGCAATCCAAA	59.538	45.000	0.00	0.00	32.05	3.28
756	1333	0.031857	CTGCCACAAACGCAATCCAA	59.968	50.000	0.00	0.00	35.40	3.53
757	1334	0.821301	TCTGCCACAAACGCAATCCA	60.821	50.000	0.00	0.00	35.40	3.41
758	1335	0.109597	CTCTGCCACAAACGCAATCC	60.110	55.000	0.00	0.00	35.40	3.01
759	1336	0.874390	TCTCTGCCACAAACGCAATC	59.126	50.000	0.00	0.00	35.40	2.67
760	1337	1.200716	CATCTCTGCCACAAACGCAAT	59.799	47.619	0.00	0.00	35.40	3.56
761	1338	0.592637	CATCTCTGCCACAAACGCAA	59.407	50.000	0.00	0.00	35.40	4.85
762	1339	1.236616	CCATCTCTGCCACAAACGCA	61.237	55.000	0.00	0.00	34.41	5.24
763	1340	0.955428	TCCATCTCTGCCACAAACGC	60.955	55.000	0.00	0.00	0.00	4.84
876	1453	2.203422	CGGATCGGGAGAGGCTCT	60.203	66.667	18.80	18.80	45.48	4.09
884	1461	2.685743	TTTGGGCTCGGATCGGGA	60.686	61.111	0.00	0.00	0.00	5.14
885	1462	2.513897	GTTTGGGCTCGGATCGGG	60.514	66.667	0.00	0.00	0.00	5.14
936	1547	1.212250	TGGGGGAGAGGGTTTAAGCC	61.212	60.000	4.84	4.84	35.59	4.35
937	1548	0.702316	TTGGGGGAGAGGGTTTAAGC	59.298	55.000	0.00	0.00	0.00	3.09
938	1549	2.091830	GGATTGGGGGAGAGGGTTTAAG	60.092	54.545	0.00	0.00	0.00	1.85
939	1550	1.927371	GGATTGGGGGAGAGGGTTTAA	59.073	52.381	0.00	0.00	0.00	1.52
940	1551	1.203635	TGGATTGGGGGAGAGGGTTTA	60.204	52.381	0.00	0.00	0.00	2.01
941	1552	0.479589	TGGATTGGGGGAGAGGGTTT	60.480	55.000	0.00	0.00	0.00	3.27
942	1553	1.165782	TGGATTGGGGGAGAGGGTT	59.834	57.895	0.00	0.00	0.00	4.11
943	1554	1.619669	GTGGATTGGGGGAGAGGGT	60.620	63.158	0.00	0.00	0.00	4.34
944	1555	2.386935	GGTGGATTGGGGGAGAGGG	61.387	68.421	0.00	0.00	0.00	4.30
945	1556	1.214305	TTGGTGGATTGGGGGAGAGG	61.214	60.000	0.00	0.00	0.00	3.69
946	1557	0.704076	TTTGGTGGATTGGGGGAGAG	59.296	55.000	0.00	0.00	0.00	3.20
947	1558	0.704076	CTTTGGTGGATTGGGGGAGA	59.296	55.000	0.00	0.00	0.00	3.71
948	1559	0.972471	GCTTTGGTGGATTGGGGGAG	60.972	60.000	0.00	0.00	0.00	4.30
949	1560	1.078347	GCTTTGGTGGATTGGGGGA	59.922	57.895	0.00	0.00	0.00	4.81
950	1561	1.989508	GGCTTTGGTGGATTGGGGG	60.990	63.158	0.00	0.00	0.00	5.40
951	1562	1.989508	GGGCTTTGGTGGATTGGGG	60.990	63.158	0.00	0.00	0.00	4.96
952	1563	1.989508	GGGGCTTTGGTGGATTGGG	60.990	63.158	0.00	0.00	0.00	4.12
953	1564	0.835543	TTGGGGCTTTGGTGGATTGG	60.836	55.000	0.00	0.00	0.00	3.16
954	1565	1.055040	TTTGGGGCTTTGGTGGATTG	58.945	50.000	0.00	0.00	0.00	2.67
955	1566	1.055849	GTTTGGGGCTTTGGTGGATT	58.944	50.000	0.00	0.00	0.00	3.01
956	1567	0.835971	GGTTTGGGGCTTTGGTGGAT	60.836	55.000	0.00	0.00	0.00	3.41
964	1575	2.123033	GTGTGGGGTTTGGGGCTT	60.123	61.111	0.00	0.00	0.00	4.35
970	1581	0.673644	CGAGCTAGGTGTGGGGTTTG	60.674	60.000	0.00	0.00	0.00	2.93
1092	1740	3.948086	GAGCTCCGTGTCGTGGTCG	62.948	68.421	0.87	0.00	38.55	4.79
1391	2039	1.066573	CCTCAATCGTGTGCTTCTCCT	60.067	52.381	0.00	0.00	0.00	3.69
1516	2164	2.692557	AGAAGCATAGACAGATCGCAGT	59.307	45.455	0.00	0.00	0.00	4.40
1644	2292	7.889600	ACTTTCCCAAATTGAATAAAATGCCAT	59.110	29.630	0.00	0.00	0.00	4.40
1926	2801	1.072266	AGTGGGGTGCAGGAATGTTA	58.928	50.000	0.00	0.00	0.00	2.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.