AutoCloner

Multiple sequence alignment - TraesCS6A01G294600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G294600	chr6A	100.000	3895	0	0	1	3895	528580717	528584611	0.000000e+00	7193.0
1	TraesCS6A01G294600	chr6A	97.705	2789	54	7	1	2783	528358210	528360994	0.000000e+00	4787.0
2	TraesCS6A01G294600	chr6A	96.583	1112	36	2	2785	3895	528361028	528362138	0.000000e+00	1842.0
3	TraesCS6A01G294600	chr7D	94.076	709	40	2	204	911	509159495	509160202	0.000000e+00	1075.0
4	TraesCS6A01G294600	chr7D	79.148	916	159	28	1886	2782	59415821	59416723	4.300000e-169	604.0
5	TraesCS6A01G294600	chr7D	93.023	43	2	1	1291	1333	45153130	45153171	1.170000e-05	62.1
6	TraesCS6A01G294600	chr1D	91.655	719	49	5	204	912	34813338	34812621	0.000000e+00	985.0
7	TraesCS6A01G294600	chr1D	91.667	48	3	1	1289	1336	199422787	199422741	9.030000e-07	65.8
8	TraesCS6A01G294600	chr5A	91.127	710	52	8	204	912	38203450	38204149	0.000000e+00	952.0
9	TraesCS6A01G294600	chr5A	86.761	710	59	17	204	912	572507120	572507795	0.000000e+00	758.0
10	TraesCS6A01G294600	chr5A	97.101	207	6	0	1	207	644441932	644441726	2.230000e-92	350.0
11	TraesCS6A01G294600	chr3D	80.325	1291	195	47	1517	2782	15372563	15371307	0.000000e+00	922.0
12	TraesCS6A01G294600	chr3D	78.460	1286	227	41	1515	2782	15395937	15394684	0.000000e+00	795.0
13	TraesCS6A01G294600	chr3A	80.186	1292	205	37	1515	2782	20896886	20898150	0.000000e+00	920.0
14	TraesCS6A01G294600	chr3A	79.537	1295	207	46	1516	2782	20835736	20837000	0.000000e+00	870.0
15	TraesCS6A01G294600	chr3A	97.585	207	5	0	1	207	30085873	30086079	4.790000e-94	355.0
16	TraesCS6A01G294600	chr7B	89.944	716	59	8	204	912	4755700	4756409	0.000000e+00	911.0
17	TraesCS6A01G294600	chr7B	91.667	48	3	1	1286	1333	363222288	363222334	9.030000e-07	65.8
18	TraesCS6A01G294600	chr7B	100.000	28	0	0	3175	3202	135888376	135888349	7.000000e-03	52.8
19	TraesCS6A01G294600	chr3B	79.660	1293	204	45	1516	2782	22511868	22513127	0.000000e+00	876.0
20	TraesCS6A01G294600	chr3B	78.241	1296	219	52	1518	2782	22345332	22344069	0.000000e+00	773.0
21	TraesCS6A01G294600	chr3B	93.262	282	13	3	635	912	452908229	452908508	1.010000e-110	411.0
22	TraesCS6A01G294600	chr5D	88.732	710	47	7	204	912	458486177	458485500	0.000000e+00	837.0
23	TraesCS6A01G294600	chr5D	78.868	1254	211	43	1518	2741	558347219	558345990	0.000000e+00	798.0
24	TraesCS6A01G294600	chr5D	93.548	217	13	1	696	912	178457831	178457616	4.850000e-84	322.0
25	TraesCS6A01G294600	chr5D	83.871	62	8	2	1273	1333	399128359	399128419	1.510000e-04	58.4
26	TraesCS6A01G294600	chr7A	78.714	1306	219	41	1517	2782	63778431	63779717	0.000000e+00	817.0
27	TraesCS6A01G294600	chr6D	87.764	711	49	11	204	912	367589181	367589855	0.000000e+00	797.0
28	TraesCS6A01G294600	chr4A	85.345	696	79	18	212	904	50208366	50207691	0.000000e+00	699.0
29	TraesCS6A01G294600	chr4A	80.536	858	134	26	1898	2741	611269507	611268669	2.550000e-176	628.0
30	TraesCS6A01G294600	chrUn	80.765	889	140	20	1900	2780	15583090	15582225	0.000000e+00	665.0
31	TraesCS6A01G294600	chrUn	80.743	888	142	18	1900	2780	273912939	273913804	0.000000e+00	665.0
32	TraesCS6A01G294600	chrUn	80.743	888	142	18	1900	2780	374916202	374917067	0.000000e+00	665.0
33	TraesCS6A01G294600	chrUn	80.631	888	143	18	1900	2780	15425475	15424610	0.000000e+00	660.0
34	TraesCS6A01G294600	chrUn	80.518	888	144	18	1900	2780	15738600	15739465	0.000000e+00	654.0
35	TraesCS6A01G294600	chrUn	91.845	466	36	2	204	668	175493657	175494121	0.000000e+00	649.0
36	TraesCS6A01G294600	chrUn	80.902	754	121	13	1900	2649	285592682	285591948	1.210000e-159	573.0
37	TraesCS6A01G294600	chr2D	87.821	156	18	1	993	1148	2441475	2441321	8.600000e-42	182.0
38	TraesCS6A01G294600	chr5B	88.571	70	8	0	1076	1145	704302494	704302563	6.930000e-13	86.1
39	TraesCS6A01G294600	chr2A	95.455	44	1	1	1290	1333	194419529	194419571	6.980000e-08	69.4
40	TraesCS6A01G294600	chr1A	95.349	43	1	1	1291	1333	164456885	164456926	2.510000e-07	67.6
41	TraesCS6A01G294600	chr1A	93.333	45	2	1	1289	1333	18492811	18492768	9.030000e-07	65.8
42	TraesCS6A01G294600	chr4D	90.196	51	4	1	1286	1336	54603074	54603025	9.030000e-07	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G294600	chr6A	528580717	528584611	3894	False	7193.0	7193	100.000	1	3895	1	chr6A.!!$F1	3894
1	TraesCS6A01G294600	chr6A	528358210	528362138	3928	False	3314.5	4787	97.144	1	3895	2	chr6A.!!$F2	3894
2	TraesCS6A01G294600	chr7D	509159495	509160202	707	False	1075.0	1075	94.076	204	911	1	chr7D.!!$F3	707
3	TraesCS6A01G294600	chr7D	59415821	59416723	902	False	604.0	604	79.148	1886	2782	1	chr7D.!!$F2	896
4	TraesCS6A01G294600	chr1D	34812621	34813338	717	True	985.0	985	91.655	204	912	1	chr1D.!!$R1	708
5	TraesCS6A01G294600	chr5A	38203450	38204149	699	False	952.0	952	91.127	204	912	1	chr5A.!!$F1	708
6	TraesCS6A01G294600	chr5A	572507120	572507795	675	False	758.0	758	86.761	204	912	1	chr5A.!!$F2	708
7	TraesCS6A01G294600	chr3D	15371307	15372563	1256	True	922.0	922	80.325	1517	2782	1	chr3D.!!$R1	1265
8	TraesCS6A01G294600	chr3D	15394684	15395937	1253	True	795.0	795	78.460	1515	2782	1	chr3D.!!$R2	1267
9	TraesCS6A01G294600	chr3A	20896886	20898150	1264	False	920.0	920	80.186	1515	2782	1	chr3A.!!$F2	1267
10	TraesCS6A01G294600	chr3A	20835736	20837000	1264	False	870.0	870	79.537	1516	2782	1	chr3A.!!$F1	1266
11	TraesCS6A01G294600	chr7B	4755700	4756409	709	False	911.0	911	89.944	204	912	1	chr7B.!!$F1	708
12	TraesCS6A01G294600	chr3B	22511868	22513127	1259	False	876.0	876	79.660	1516	2782	1	chr3B.!!$F1	1266
13	TraesCS6A01G294600	chr3B	22344069	22345332	1263	True	773.0	773	78.241	1518	2782	1	chr3B.!!$R1	1264
14	TraesCS6A01G294600	chr5D	458485500	458486177	677	True	837.0	837	88.732	204	912	1	chr5D.!!$R2	708
15	TraesCS6A01G294600	chr5D	558345990	558347219	1229	True	798.0	798	78.868	1518	2741	1	chr5D.!!$R3	1223
16	TraesCS6A01G294600	chr7A	63778431	63779717	1286	False	817.0	817	78.714	1517	2782	1	chr7A.!!$F1	1265
17	TraesCS6A01G294600	chr6D	367589181	367589855	674	False	797.0	797	87.764	204	912	1	chr6D.!!$F1	708
18	TraesCS6A01G294600	chr4A	50207691	50208366	675	True	699.0	699	85.345	212	904	1	chr4A.!!$R1	692
19	TraesCS6A01G294600	chr4A	611268669	611269507	838	True	628.0	628	80.536	1898	2741	1	chr4A.!!$R2	843
20	TraesCS6A01G294600	chrUn	15582225	15583090	865	True	665.0	665	80.765	1900	2780	1	chrUn.!!$R2	880
21	TraesCS6A01G294600	chrUn	273912939	273913804	865	False	665.0	665	80.743	1900	2780	1	chrUn.!!$F3	880
22	TraesCS6A01G294600	chrUn	374916202	374917067	865	False	665.0	665	80.743	1900	2780	1	chrUn.!!$F4	880
23	TraesCS6A01G294600	chrUn	15424610	15425475	865	True	660.0	660	80.631	1900	2780	1	chrUn.!!$R1	880
24	TraesCS6A01G294600	chrUn	15738600	15739465	865	False	654.0	654	80.518	1900	2780	1	chrUn.!!$F1	880
25	TraesCS6A01G294600	chrUn	285591948	285592682	734	True	573.0	573	80.902	1900	2649	1	chrUn.!!$R3	749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
400	403	0.240945	ACTTGCCGCATTTCTTTCCG	59.759	50.0	0.00	0.0	0.0	4.30	F
1501	1564	0.673644	AAAGACGCATGGGGAGAACG	60.674	55.0	14.94	0.0	0.0	3.95	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1523	1586	1.550130	CCCTCACGAAACTGGCCCTA	61.550	60.000	0.0	0.0	0.0	3.53	R
3470	3693	1.227263	CGCGTGGGAAGGTGGATAG	60.227	63.158	0.0	0.0	0.0	2.08	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	42	2.044946	GCTTCCTGGTCCGCCAAT	60.045	61.111	0.00	0.00	45.51	3.16
124	125	6.500684	AGTAGCAAAGGTGTCAATTACATG	57.499	37.500	0.00	0.00	41.10	3.21
134	135	5.220931	GGTGTCAATTACATGCTTGATCCTC	60.221	44.000	6.60	0.00	41.10	3.71
181	182	7.348080	TGAAGAATAAGAGTGTATCATCGGT	57.652	36.000	0.00	0.00	0.00	4.69
187	188	4.909696	AGAGTGTATCATCGGTGAAGAG	57.090	45.455	0.60	0.00	38.01	2.85
220	221	1.672881	CCGAGGATGTGCAGGAAATTC	59.327	52.381	0.00	0.00	0.00	2.17
224	225	4.517285	GAGGATGTGCAGGAAATTCACTA	58.483	43.478	0.00	0.00	0.00	2.74
400	403	0.240945	ACTTGCCGCATTTCTTTCCG	59.759	50.000	0.00	0.00	0.00	4.30
420	423	9.423061	CTTTCCGTTAAATGGAATTTTCTTCAT	57.577	29.630	10.37	0.00	46.10	2.57
906	967	3.276091	CCTGTTGCAACGCACGGA	61.276	61.111	23.79	5.01	38.71	4.69
1067	1128	4.968812	TCTCCATGTACGATTACGAACA	57.031	40.909	0.00	0.00	42.66	3.18
1074	1135	5.369685	TGTACGATTACGAACAGGTACAA	57.630	39.130	9.72	0.00	42.66	2.41
1115	1176	2.943033	CAGACGGAAACAAACTTGGACT	59.057	45.455	0.00	0.00	0.00	3.85
1259	1320	2.618709	CGAAATAATGGGAGCAAGGGAC	59.381	50.000	0.00	0.00	0.00	4.46
1267	1328	0.827368	GGAGCAAGGGACTAGAGTGG	59.173	60.000	0.00	0.00	38.49	4.00
1276	1337	3.141083	AGGGACTAGAGTGGATGCAGATA	59.859	47.826	0.00	0.00	36.02	1.98
1446	1509	4.217334	TCAACACAAACTCACACACACAAT	59.783	37.500	0.00	0.00	0.00	2.71
1501	1564	0.673644	AAAGACGCATGGGGAGAACG	60.674	55.000	14.94	0.00	0.00	3.95
1885	2001	8.485578	ACTATACCTTTGACCATTTTCCAAAA	57.514	30.769	0.00	0.00	30.56	2.44
1890	2010	5.473162	CCTTTGACCATTTTCCAAAATTCCC	59.527	40.000	0.00	0.00	36.52	3.97
2045	2176	7.228706	TGCGTGTCATACATAGAGATCTTAAGA	59.771	37.037	7.82	7.82	0.00	2.10
2597	2788	1.816835	ACAAAGCTGATGAGGTGCATG	59.183	47.619	6.76	0.00	37.34	4.06
2629	2820	6.441274	CATTGCTTTGTGTACAAGAGAATGT	58.559	36.000	0.00	0.00	37.15	2.71
2909	3132	1.669779	CAAGTACTCCCTCCGTCTACG	59.330	57.143	0.00	0.00	39.44	3.51
2961	3184	1.212688	CCAAGGCACATGGTGATAGGA	59.787	52.381	0.00	0.00	43.04	2.94
2962	3185	2.357050	CCAAGGCACATGGTGATAGGAA	60.357	50.000	0.00	0.00	43.04	3.36
2963	3186	3.355378	CAAGGCACATGGTGATAGGAAA	58.645	45.455	0.00	0.00	35.23	3.13
3035	3258	4.214119	ACACAACGAAAGGATTGAGATGTG	59.786	41.667	0.00	0.00	41.34	3.21
3093	3316	2.204291	ATGGGGGAGCCAGACCAA	60.204	61.111	0.00	0.00	36.44	3.67
3109	3332	5.264395	CAGACCAAGGAATTTCTGGGTTAT	58.736	41.667	14.56	3.81	41.01	1.89
3183	3406	0.986019	CCAGGCACCCCATACACCTA	60.986	60.000	0.00	0.00	0.00	3.08
3211	3434	3.950395	AGGGAGTATGAAAGATGCTTTGC	59.050	43.478	0.00	0.00	0.00	3.68
3327	3550	3.118000	AGCATGCATCTCAAGAAGATCCA	60.118	43.478	21.98	0.00	43.13	3.41
3352	3575	7.280205	CACTTTCGGCAATAGTTTCCTATTACT	59.720	37.037	0.00	0.00	41.03	2.24
3455	3678	1.762957	CCCTATATAGGCCCATCCACG	59.237	57.143	21.75	2.79	42.26	4.94
3488	3711	1.227263	CTATCCACCTTCCCACGCG	60.227	63.158	3.53	3.53	0.00	6.01
3505	3728	3.499737	GCGCACCGGTCCTTCATG	61.500	66.667	2.59	0.00	0.00	3.07
3562	3785	1.138069	CCACACCTACATACGCCATCA	59.862	52.381	0.00	0.00	0.00	3.07
3602	3825	0.680921	CAGGGGTTGTTGATCGCCAT	60.681	55.000	0.00	0.00	38.80	4.40
3617	3841	2.420568	CCATGCCACCATCAGCCAC	61.421	63.158	0.00	0.00	0.00	5.01
3621	3845	4.720902	CCACCATCAGCCACGGCA	62.721	66.667	11.35	0.00	44.88	5.69
3656	3880	2.679716	GTCTCCAGCAAGCCCCAT	59.320	61.111	0.00	0.00	0.00	4.00
3672	3896	2.282180	ATGGTTGCGTGTGGGACC	60.282	61.111	0.00	0.00	0.00	4.46
3680	3904	3.661648	GTGTGGGACCCCTGCCAT	61.662	66.667	8.45	0.00	40.59	4.40
3685	3909	4.195334	GGACCCCTGCCATCGCAT	62.195	66.667	0.00	0.00	46.11	4.73
3689	3913	2.903855	CCCTGCCATCGCATCACC	60.904	66.667	0.00	0.00	46.11	4.02
3778	4002	6.143919	GGGCAAAGAAAGTAAAGAAAATCACG	59.856	38.462	0.00	0.00	0.00	4.35
3780	4004	7.305993	GGCAAAGAAAGTAAAGAAAATCACGTG	60.306	37.037	9.94	9.94	0.00	4.49
3799	4023	2.282674	ACGGTACCTCTGGCGACA	60.283	61.111	10.90	0.00	39.59	4.35
3806	4030	0.179100	ACCTCTGGCGACAATCATCG	60.179	55.000	0.00	0.00	45.09	3.84
3858	4082	1.025113	TCTGAGGCTGACGAGTACGG	61.025	60.000	0.00	0.00	44.46	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	2.359975	GGACCAGGAAGCAACCCG	60.360	66.667	0.00	0.00	0.00	5.28
111	112	5.587844	AGAGGATCAAGCATGTAATTGACAC	59.412	40.000	10.88	8.00	38.31	3.67
124	125	3.625313	GGAACAAGCTAAGAGGATCAAGC	59.375	47.826	0.00	0.00	43.99	4.01
134	135	3.330267	AGCGAAAGAGGAACAAGCTAAG	58.670	45.455	0.00	0.00	0.00	2.18
181	182	2.759985	GTGTCCCACCTCCTCTTCA	58.240	57.895	0.00	0.00	0.00	3.02
202	203	3.350833	AGTGAATTTCCTGCACATCCTC	58.649	45.455	0.00	0.00	35.08	3.71
220	221	6.716628	AGCCCACAATCCATATAATTGTAGTG	59.283	38.462	12.76	7.69	43.62	2.74
224	225	8.725606	ATAAAGCCCACAATCCATATAATTGT	57.274	30.769	8.96	8.96	45.73	2.71
324	325	4.180057	GCGGCCAATTATGTCATGAAAAA	58.820	39.130	2.24	0.00	0.00	1.94
384	387	1.524848	TAACGGAAAGAAATGCGGCA	58.475	45.000	4.58	4.58	38.57	5.69
420	423	9.875708	ATAACATTTATTAGGGAGCCAATTACA	57.124	29.630	0.00	0.00	0.00	2.41
460	465	8.107095	AGTGACTTAATTGTTGGGCTATCTAAA	58.893	33.333	0.00	0.00	0.00	1.85
563	572	9.130661	TGAGAGAATTCTTTTATGTTTGTTCCA	57.869	29.630	9.87	0.00	32.53	3.53
687	732	8.863872	TCCGATCACTGATTTCTATATAGTCA	57.136	34.615	9.58	5.66	0.00	3.41
709	762	7.242079	AGTCGATTACATAACTTCGATATCCG	58.758	38.462	0.00	0.00	41.96	4.18
1051	1112	5.565592	TGTACCTGTTCGTAATCGTACAT	57.434	39.130	0.00	0.00	43.79	2.29
1067	1128	2.561478	ATTTGTGGCGTCTTGTACCT	57.439	45.000	0.00	0.00	0.00	3.08
1074	1135	6.149633	GTCTGAAAAATTATTTGTGGCGTCT	58.850	36.000	0.00	0.00	0.00	4.18
1115	1176	0.250727	GACAGTGCCAAAGCCACCTA	60.251	55.000	0.00	0.00	38.69	3.08
1259	1320	5.076182	TCTTCCTATCTGCATCCACTCTAG	58.924	45.833	0.00	0.00	0.00	2.43
1293	1354	5.652994	AATAAAAGCGCCATTTACCAGAA	57.347	34.783	15.66	0.00	0.00	3.02
1294	1355	6.376018	AGTTAATAAAAGCGCCATTTACCAGA	59.624	34.615	15.66	0.00	0.00	3.86
1336	1397	7.831691	TTTTGGGTGAATGAGATGTTTCTTA	57.168	32.000	0.00	0.00	30.30	2.10
1392	1455	6.703607	TGCATTTTAGTTGTACAATGGTTTGG	59.296	34.615	12.26	1.85	37.15	3.28
1394	1457	7.268586	TGTGCATTTTAGTTGTACAATGGTTT	58.731	30.769	12.26	0.00	36.87	3.27
1523	1586	1.550130	CCCTCACGAAACTGGCCCTA	61.550	60.000	0.00	0.00	0.00	3.53
2045	2176	3.554934	TGTCCAAGAGAATGTTGCTTGT	58.445	40.909	0.00	0.00	38.17	3.16
2597	2788	8.397906	TCTTGTACACAAAGCAATGCTATATTC	58.602	33.333	8.68	0.00	38.25	1.75
2629	2820	1.473257	GCATGGTTGGTCGATCAGCTA	60.473	52.381	12.50	6.77	0.00	3.32
2841	3064	9.855021	GTAACTCCACTTACAATTTTGCATTAT	57.145	29.630	0.00	0.00	0.00	1.28
2909	3132	4.149910	GCTCCTAGAGCGTTCTATACAC	57.850	50.000	9.58	0.00	45.85	2.90
3035	3258	1.679559	GACCCCCTTTCCATGCATGC	61.680	60.000	21.69	11.82	0.00	4.06
3093	3316	5.796502	TTCCTCATAACCCAGAAATTCCT	57.203	39.130	0.00	0.00	0.00	3.36
3183	3406	3.383698	TCTTTCATACTCCCTCCGTCT	57.616	47.619	0.00	0.00	0.00	4.18
3211	3434	4.782156	CTCACATATGAGTACTCGAGCTG	58.218	47.826	17.85	13.87	46.39	4.24
3352	3575	6.663093	AGCATGTTTTTATGTCATCTTACCCA	59.337	34.615	0.00	0.00	0.00	4.51
3408	3631	6.015918	AGTTGGGATGATTTTGGTGATAACA	58.984	36.000	0.00	0.00	0.00	2.41
3470	3693	1.227263	CGCGTGGGAAGGTGGATAG	60.227	63.158	0.00	0.00	0.00	2.08
3488	3711	3.499737	CATGAAGGACCGGTGCGC	61.500	66.667	21.23	16.91	0.00	6.09
3505	3728	1.524621	CCGTGATGGAGGCATGGAC	60.525	63.158	0.00	0.00	43.59	4.02
3589	3812	1.594194	GGTGGCATGGCGATCAACAA	61.594	55.000	15.27	0.00	0.00	2.83
3602	3825	4.720902	CCGTGGCTGATGGTGGCA	62.721	66.667	0.00	0.00	37.66	4.92
3639	3863	1.751927	CATGGGGCTTGCTGGAGAC	60.752	63.158	0.00	0.00	0.00	3.36
3656	3880	4.572571	GGGTCCCACACGCAACCA	62.573	66.667	1.78	0.00	37.88	3.67
3763	3987	3.744426	CCGTCCACGTGATTTTCTTTACT	59.256	43.478	19.30	0.00	37.74	2.24
3765	3989	3.731089	ACCGTCCACGTGATTTTCTTTA	58.269	40.909	19.30	0.00	37.74	1.85
3778	4002	2.577593	GCCAGAGGTACCGTCCAC	59.422	66.667	6.18	0.00	0.00	4.02
3780	4004	2.753043	TCGCCAGAGGTACCGTCC	60.753	66.667	6.18	0.00	0.00	4.79
3799	4023	2.889045	CAATGAAGGGGATGCGATGATT	59.111	45.455	0.00	0.00	0.00	2.57
3806	4030	1.684983	CATGGTCAATGAAGGGGATGC	59.315	52.381	0.00	0.00	38.72	3.91
3858	4082	1.925185	GATCGAAGTCCTTGGCGTTAC	59.075	52.381	0.00	0.00	0.00	2.50

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.