Multiple sequence alignment - TraesCS6A01G293500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G293500 chr6A 100.000 3870 0 0 1 3870 524869425 524865556 0.000000e+00 7147.0
1 TraesCS6A01G293500 chr6A 92.632 95 7 0 2142 2236 383078074 383077980 1.880000e-28 137.0
2 TraesCS6A01G293500 chr6B 91.216 1628 73 29 2246 3862 573160388 573158820 0.000000e+00 2150.0
3 TraesCS6A01G293500 chr6B 88.755 1076 72 27 998 2060 573161735 573160696 0.000000e+00 1271.0
4 TraesCS6A01G293500 chr6B 84.990 966 73 35 1 942 573162774 573161857 0.000000e+00 915.0
5 TraesCS6A01G293500 chr6B 87.059 85 11 0 2026 2110 529368348 529368432 3.180000e-16 97.1
6 TraesCS6A01G293500 chr6B 82.857 105 16 1 2026 2130 199762949 199762847 4.120000e-15 93.5
7 TraesCS6A01G293500 chr6D 85.290 2223 166 71 12 2142 382799530 382797377 0.000000e+00 2145.0
8 TraesCS6A01G293500 chr6D 88.544 1641 102 44 2246 3862 382797385 382795807 0.000000e+00 1910.0
9 TraesCS6A01G293500 chr6D 82.857 105 16 1 2026 2130 110881509 110881407 4.120000e-15 93.5
10 TraesCS6A01G293500 chr7A 80.114 528 79 15 998 1524 167680504 167681006 1.700000e-98 370.0
11 TraesCS6A01G293500 chr7A 79.630 540 67 28 990 1524 167736210 167735709 7.960000e-92 348.0
12 TraesCS6A01G293500 chr7D 79.661 531 85 15 998 1524 165944611 165945122 1.020000e-95 361.0
13 TraesCS6A01G293500 chr7D 78.897 526 74 24 1001 1524 166204301 166203811 4.820000e-84 322.0
14 TraesCS6A01G293500 chr7B 79.623 530 87 14 998 1524 130120592 130121103 1.020000e-95 361.0
15 TraesCS6A01G293500 chr7B 78.977 528 70 28 1001 1524 130504054 130503564 4.820000e-84 322.0
16 TraesCS6A01G293500 chr7B 86.667 120 16 0 2143 2262 34609755 34609636 2.430000e-27 134.0
17 TraesCS6A01G293500 chr7B 88.636 88 10 0 2023 2110 677755799 677755886 1.470000e-19 108.0
18 TraesCS6A01G293500 chr4D 90.991 111 10 0 2143 2253 128641908 128641798 2.410000e-32 150.0
19 TraesCS6A01G293500 chr4A 88.596 114 13 0 2140 2253 338511584 338511697 5.210000e-29 139.0
20 TraesCS6A01G293500 chr4A 86.364 88 12 0 2023 2110 727413054 727413141 3.180000e-16 97.1
21 TraesCS6A01G293500 chr5D 87.719 114 14 0 2140 2253 56805508 56805621 2.430000e-27 134.0
22 TraesCS6A01G293500 chr3A 85.593 118 15 2 2136 2253 156231335 156231220 5.250000e-24 122.0
23 TraesCS6A01G293500 chr1D 84.426 122 17 2 2136 2257 85196111 85196230 6.790000e-23 119.0
24 TraesCS6A01G293500 chr2B 82.707 133 17 6 2140 2269 741215970 741216099 3.160000e-21 113.0
25 TraesCS6A01G293500 chr2B 82.707 133 17 6 2140 2269 741245542 741245671 3.160000e-21 113.0
26 TraesCS6A01G293500 chr2B 87.209 86 11 0 2026 2111 385567605 385567520 8.850000e-17 99.0
27 TraesCS6A01G293500 chr1B 89.773 88 9 0 2023 2110 600974863 600974776 3.160000e-21 113.0
28 TraesCS6A01G293500 chr5B 86.813 91 12 0 2020 2110 366475828 366475918 6.840000e-18 102.0
29 TraesCS6A01G293500 chr3B 87.500 88 11 0 2026 2113 786786515 786786602 6.840000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G293500 chr6A 524865556 524869425 3869 True 7147.000000 7147 100.000000 1 3870 1 chr6A.!!$R2 3869
1 TraesCS6A01G293500 chr6B 573158820 573162774 3954 True 1445.333333 2150 88.320333 1 3862 3 chr6B.!!$R2 3861
2 TraesCS6A01G293500 chr6D 382795807 382799530 3723 True 2027.500000 2145 86.917000 12 3862 2 chr6D.!!$R2 3850
3 TraesCS6A01G293500 chr7A 167680504 167681006 502 False 370.000000 370 80.114000 998 1524 1 chr7A.!!$F1 526
4 TraesCS6A01G293500 chr7A 167735709 167736210 501 True 348.000000 348 79.630000 990 1524 1 chr7A.!!$R1 534
5 TraesCS6A01G293500 chr7D 165944611 165945122 511 False 361.000000 361 79.661000 998 1524 1 chr7D.!!$F1 526
6 TraesCS6A01G293500 chr7B 130120592 130121103 511 False 361.000000 361 79.623000 998 1524 1 chr7B.!!$F1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
946 1052 0.246086 AGCCGAGCAGAGACAAGAAG 59.754 55.0 0.00 0.0 0.0 2.85 F
2371 2820 0.380733 TGAGATGCCGCGTACAGTAG 59.619 55.0 4.92 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2700 3151 0.106918 GTGGGTCTGGGTTCAACACA 60.107 55.0 0.0 0.0 0.00 3.72 R
3275 3738 0.178967 TGCAGGTTGGCATCTTCCAA 60.179 50.0 0.0 0.0 43.36 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.092375 GGACAAAAGGAGGGGATCGATT 60.092 50.000 0.00 0.00 0.00 3.34
32 33 3.621558 GACAAAAGGAGGGGATCGATTT 58.378 45.455 0.00 0.00 0.00 2.17
33 34 3.356290 ACAAAAGGAGGGGATCGATTTG 58.644 45.455 0.00 0.00 38.82 2.32
34 35 3.010138 ACAAAAGGAGGGGATCGATTTGA 59.990 43.478 0.00 0.00 37.48 2.69
35 36 3.567478 AAAGGAGGGGATCGATTTGAG 57.433 47.619 0.00 0.00 0.00 3.02
58 61 2.223735 TGACAGTGGAAGTCGTCTTGTC 60.224 50.000 0.00 2.32 38.83 3.18
75 78 2.126071 CCAGCCTACCGACACACG 60.126 66.667 0.00 0.00 42.18 4.49
152 165 6.595772 ATTCAGTTGACATCTTCTTATCGC 57.404 37.500 0.00 0.00 0.00 4.58
171 184 5.359716 TCGCGTCTTTAAGAGATCTATCC 57.640 43.478 5.77 0.00 36.61 2.59
186 199 4.897509 TCTATCCATGGCTTGACCTATG 57.102 45.455 6.96 0.00 40.22 2.23
187 200 2.965671 ATCCATGGCTTGACCTATGG 57.034 50.000 6.96 0.00 43.29 2.74
192 205 2.936919 TGGCTTGACCTATGGCTATG 57.063 50.000 0.00 0.00 40.22 2.23
204 217 1.887707 GGCTATGCACACCTACGGC 60.888 63.158 0.00 0.00 0.00 5.68
211 224 1.017701 GCACACCTACGGCAGTTACC 61.018 60.000 0.00 0.00 0.00 2.85
231 244 0.678048 ACCGCATCTTGCTTCTTCCC 60.678 55.000 0.00 0.00 42.25 3.97
250 263 2.112297 GAGCCAACGACCCAACCA 59.888 61.111 0.00 0.00 0.00 3.67
251 264 1.966451 GAGCCAACGACCCAACCAG 60.966 63.158 0.00 0.00 0.00 4.00
252 265 2.203294 GCCAACGACCCAACCAGT 60.203 61.111 0.00 0.00 0.00 4.00
253 266 1.071814 GCCAACGACCCAACCAGTA 59.928 57.895 0.00 0.00 0.00 2.74
254 267 0.322187 GCCAACGACCCAACCAGTAT 60.322 55.000 0.00 0.00 0.00 2.12
342 359 4.684242 TCACATTAACGCGATCATGGATAC 59.316 41.667 15.93 0.00 0.00 2.24
355 372 3.134081 TCATGGATACGGAAAGGAAGTCC 59.866 47.826 0.00 0.00 42.51 3.85
383 400 3.963428 AGCTTGAACCTCACTTATCGT 57.037 42.857 0.00 0.00 0.00 3.73
413 430 2.594592 AGTTCACGGTTGGGCAGC 60.595 61.111 0.00 0.00 0.00 5.25
414 431 2.594592 GTTCACGGTTGGGCAGCT 60.595 61.111 0.00 0.00 0.00 4.24
415 432 1.302192 GTTCACGGTTGGGCAGCTA 60.302 57.895 0.00 0.00 0.00 3.32
416 433 1.003839 TTCACGGTTGGGCAGCTAG 60.004 57.895 0.00 0.00 0.00 3.42
439 469 0.676782 TGGCGAAAGAGCTAAAGCCC 60.677 55.000 13.31 0.00 43.56 5.19
462 492 3.099362 CACGTTACTACACGCAGATCTC 58.901 50.000 0.00 0.00 44.37 2.75
493 523 2.669364 ACGATCGTGAGTAACCACAAC 58.331 47.619 22.06 0.00 36.89 3.32
530 560 2.347490 CCCTGATATTCCCCCGCG 59.653 66.667 0.00 0.00 0.00 6.46
544 574 2.395690 CGCGCAGATTCCGTTCAC 59.604 61.111 8.75 0.00 0.00 3.18
586 616 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
625 692 6.894682 TGTATTTCTAGTTGCCATGATGGTA 58.105 36.000 13.84 5.59 40.46 3.25
649 716 1.407656 TTCCGTGTTGGCTCTCCTGT 61.408 55.000 0.00 0.00 37.80 4.00
660 727 1.273606 GCTCTCCTGTTGTGAGTGCTA 59.726 52.381 6.98 0.00 42.87 3.49
693 762 6.039717 ACTTTGCGCCTGATAATTATTCACAT 59.960 34.615 4.18 0.00 0.00 3.21
717 790 1.944676 CGGACGCTATCTCGGCAAC 60.945 63.158 0.00 0.00 39.74 4.17
770 852 2.218603 GGGAAACGCAAGAGAGACAAA 58.781 47.619 0.00 0.00 43.62 2.83
772 854 3.131396 GGAAACGCAAGAGAGACAAAGA 58.869 45.455 0.00 0.00 43.62 2.52
773 855 3.059529 GGAAACGCAAGAGAGACAAAGAC 60.060 47.826 0.00 0.00 43.62 3.01
774 856 2.890808 ACGCAAGAGAGACAAAGACA 57.109 45.000 0.00 0.00 43.62 3.41
775 857 3.179443 ACGCAAGAGAGACAAAGACAA 57.821 42.857 0.00 0.00 43.62 3.18
776 858 3.126831 ACGCAAGAGAGACAAAGACAAG 58.873 45.455 0.00 0.00 43.62 3.16
777 859 2.478134 CGCAAGAGAGACAAAGACAAGG 59.522 50.000 0.00 0.00 43.02 3.61
778 860 2.810852 GCAAGAGAGACAAAGACAAGGG 59.189 50.000 0.00 0.00 0.00 3.95
779 861 3.495100 GCAAGAGAGACAAAGACAAGGGA 60.495 47.826 0.00 0.00 0.00 4.20
858 940 1.827399 TTTCGCCACCACTCCTCCTC 61.827 60.000 0.00 0.00 0.00 3.71
868 950 1.552792 CACTCCTCCTCCAGTTTCCTC 59.447 57.143 0.00 0.00 0.00 3.71
905 987 0.512952 AAAAGATCACGACGCACAGC 59.487 50.000 0.00 0.00 0.00 4.40
946 1052 0.246086 AGCCGAGCAGAGACAAGAAG 59.754 55.000 0.00 0.00 0.00 2.85
952 1058 3.598299 GAGCAGAGACAAGAAGCAAGAT 58.402 45.455 0.00 0.00 0.00 2.40
1056 1208 2.821366 GTGATGCAGCTGGACGGG 60.821 66.667 17.12 0.00 0.00 5.28
1732 1912 7.927048 GGTAACCACCATTACTGATTGATTAC 58.073 38.462 0.00 0.00 45.04 1.89
1733 1913 7.773690 GGTAACCACCATTACTGATTGATTACT 59.226 37.037 0.00 0.00 45.04 2.24
1734 1914 7.630242 AACCACCATTACTGATTGATTACTG 57.370 36.000 0.00 0.00 0.00 2.74
1735 1915 5.590259 ACCACCATTACTGATTGATTACTGC 59.410 40.000 0.00 0.00 0.00 4.40
1736 1916 5.824624 CCACCATTACTGATTGATTACTGCT 59.175 40.000 0.00 0.00 0.00 4.24
1737 1917 6.017605 CCACCATTACTGATTGATTACTGCTC 60.018 42.308 0.00 0.00 0.00 4.26
1738 1918 6.017605 CACCATTACTGATTGATTACTGCTCC 60.018 42.308 0.00 0.00 0.00 4.70
1739 1919 6.126652 ACCATTACTGATTGATTACTGCTCCT 60.127 38.462 0.00 0.00 0.00 3.69
1740 1920 7.071196 ACCATTACTGATTGATTACTGCTCCTA 59.929 37.037 0.00 0.00 0.00 2.94
1741 1921 7.386299 CCATTACTGATTGATTACTGCTCCTAC 59.614 40.741 0.00 0.00 0.00 3.18
1742 1922 7.661536 TTACTGATTGATTACTGCTCCTACT 57.338 36.000 0.00 0.00 0.00 2.57
1743 1923 8.762481 TTACTGATTGATTACTGCTCCTACTA 57.238 34.615 0.00 0.00 0.00 1.82
1744 1924 7.045126 ACTGATTGATTACTGCTCCTACTAC 57.955 40.000 0.00 0.00 0.00 2.73
1745 1925 6.041069 ACTGATTGATTACTGCTCCTACTACC 59.959 42.308 0.00 0.00 0.00 3.18
1765 1945 8.525290 ACTACCCTTCAAATCAATCAATTAGG 57.475 34.615 0.00 0.00 0.00 2.69
1816 1996 3.660111 GTGTCCCCTTGTGCGCAC 61.660 66.667 33.11 33.11 0.00 5.34
1874 2059 6.002704 AGAACTCTGAACAAGATCTGCATTT 58.997 36.000 0.00 0.00 33.29 2.32
1879 2064 7.446625 ACTCTGAACAAGATCTGCATTTTTACT 59.553 33.333 0.00 0.00 33.29 2.24
1880 2065 8.169977 TCTGAACAAGATCTGCATTTTTACTT 57.830 30.769 0.00 0.00 0.00 2.24
1881 2066 8.077991 TCTGAACAAGATCTGCATTTTTACTTG 58.922 33.333 0.00 0.00 39.02 3.16
1882 2067 6.642131 TGAACAAGATCTGCATTTTTACTTGC 59.358 34.615 0.00 0.00 37.38 4.01
1883 2068 6.336842 ACAAGATCTGCATTTTTACTTGCT 57.663 33.333 0.00 0.00 39.60 3.91
1884 2069 7.452880 ACAAGATCTGCATTTTTACTTGCTA 57.547 32.000 0.00 0.00 39.60 3.49
1885 2070 7.308435 ACAAGATCTGCATTTTTACTTGCTAC 58.692 34.615 0.00 0.00 39.60 3.58
1886 2071 7.175641 ACAAGATCTGCATTTTTACTTGCTACT 59.824 33.333 0.00 0.00 39.60 2.57
1887 2072 7.313951 AGATCTGCATTTTTACTTGCTACTC 57.686 36.000 0.00 0.00 39.60 2.59
1888 2073 5.880054 TCTGCATTTTTACTTGCTACTCC 57.120 39.130 0.00 0.00 39.60 3.85
1889 2074 5.312895 TCTGCATTTTTACTTGCTACTCCA 58.687 37.500 0.00 0.00 39.60 3.86
1890 2075 5.767665 TCTGCATTTTTACTTGCTACTCCAA 59.232 36.000 0.00 0.00 39.60 3.53
1891 2076 5.768317 TGCATTTTTACTTGCTACTCCAAC 58.232 37.500 0.00 0.00 39.60 3.77
1892 2077 5.300539 TGCATTTTTACTTGCTACTCCAACA 59.699 36.000 0.00 0.00 39.60 3.33
1893 2078 6.015519 TGCATTTTTACTTGCTACTCCAACAT 60.016 34.615 0.00 0.00 39.60 2.71
1894 2079 6.528072 GCATTTTTACTTGCTACTCCAACATC 59.472 38.462 0.00 0.00 35.95 3.06
1895 2080 7.575720 GCATTTTTACTTGCTACTCCAACATCT 60.576 37.037 0.00 0.00 35.95 2.90
1908 2093 6.449698 ACTCCAACATCTGCATTTTTACTTG 58.550 36.000 0.00 0.00 0.00 3.16
1955 2140 4.033129 CACAACCAAAAAGTCAAGCACATG 59.967 41.667 0.00 0.00 0.00 3.21
2008 2210 4.620982 AGAAGAAACAAAAATCTTGGCCG 58.379 39.130 0.00 0.00 36.08 6.13
2030 2232 4.083431 CGGCAATGCGTAGTATACTACTCT 60.083 45.833 30.80 17.55 44.97 3.24
2031 2233 5.562307 CGGCAATGCGTAGTATACTACTCTT 60.562 44.000 30.80 22.06 44.97 2.85
2035 2237 6.572167 ATGCGTAGTATACTACTCTTTCCC 57.428 41.667 30.80 15.59 44.97 3.97
2055 2257 2.102588 CCTCCGGAAATACTCGTTGGAT 59.897 50.000 5.23 0.00 0.00 3.41
2062 2264 6.259167 CCGGAAATACTCGTTGGATAAATGAA 59.741 38.462 0.00 0.00 33.34 2.57
2063 2265 7.041372 CCGGAAATACTCGTTGGATAAATGAAT 60.041 37.037 0.00 0.00 33.34 2.57
2064 2266 8.984764 CGGAAATACTCGTTGGATAAATGAATA 58.015 33.333 0.00 0.00 33.34 1.75
2072 2274 9.619316 CTCGTTGGATAAATGAATAAAAACACA 57.381 29.630 0.00 0.00 33.34 3.72
2130 2569 8.138074 TCAATTTATTCAGATGGAGAGAGTACG 58.862 37.037 0.00 0.00 0.00 3.67
2134 2573 6.627395 ATTCAGATGGAGAGAGTACGTTAG 57.373 41.667 0.00 0.00 0.00 2.34
2135 2574 5.354842 TCAGATGGAGAGAGTACGTTAGA 57.645 43.478 0.00 0.00 0.00 2.10
2136 2575 5.931294 TCAGATGGAGAGAGTACGTTAGAT 58.069 41.667 0.00 0.00 0.00 1.98
2137 2576 6.358178 TCAGATGGAGAGAGTACGTTAGATT 58.642 40.000 0.00 0.00 0.00 2.40
2138 2577 7.506971 TCAGATGGAGAGAGTACGTTAGATTA 58.493 38.462 0.00 0.00 0.00 1.75
2139 2578 8.158132 TCAGATGGAGAGAGTACGTTAGATTAT 58.842 37.037 0.00 0.00 0.00 1.28
2140 2579 9.438228 CAGATGGAGAGAGTACGTTAGATTATA 57.562 37.037 0.00 0.00 0.00 0.98
2141 2580 9.661563 AGATGGAGAGAGTACGTTAGATTATAG 57.338 37.037 0.00 0.00 0.00 1.31
2142 2581 9.439500 GATGGAGAGAGTACGTTAGATTATAGT 57.561 37.037 0.00 0.00 0.00 2.12
2144 2583 9.703892 TGGAGAGAGTACGTTAGATTATAGTAC 57.296 37.037 0.00 0.00 38.25 2.73
2151 2590 8.879227 AGTACGTTAGATTATAGTACTCCCTCT 58.121 37.037 0.00 0.59 42.79 3.69
2152 2591 7.982761 ACGTTAGATTATAGTACTCCCTCTG 57.017 40.000 0.00 0.00 0.00 3.35
2153 2592 7.516452 ACGTTAGATTATAGTACTCCCTCTGT 58.484 38.462 0.00 0.00 0.00 3.41
2154 2593 7.997803 ACGTTAGATTATAGTACTCCCTCTGTT 59.002 37.037 0.00 0.00 0.00 3.16
2155 2594 8.505625 CGTTAGATTATAGTACTCCCTCTGTTC 58.494 40.741 0.00 0.00 0.00 3.18
2156 2595 9.352191 GTTAGATTATAGTACTCCCTCTGTTCA 57.648 37.037 0.00 0.00 0.00 3.18
2159 2598 9.440761 AGATTATAGTACTCCCTCTGTTCATTT 57.559 33.333 0.00 0.00 0.00 2.32
2166 2605 9.892130 AGTACTCCCTCTGTTCATTTTTATAAG 57.108 33.333 0.00 0.00 0.00 1.73
2167 2606 9.668497 GTACTCCCTCTGTTCATTTTTATAAGT 57.332 33.333 0.00 0.00 0.00 2.24
2168 2607 8.794335 ACTCCCTCTGTTCATTTTTATAAGTC 57.206 34.615 0.00 0.00 0.00 3.01
2169 2608 7.549488 ACTCCCTCTGTTCATTTTTATAAGTCG 59.451 37.037 0.00 0.00 0.00 4.18
2170 2609 6.821665 TCCCTCTGTTCATTTTTATAAGTCGG 59.178 38.462 0.00 0.00 0.00 4.79
2171 2610 6.598064 CCCTCTGTTCATTTTTATAAGTCGGT 59.402 38.462 0.00 0.00 0.00 4.69
2172 2611 7.120726 CCCTCTGTTCATTTTTATAAGTCGGTT 59.879 37.037 0.00 0.00 0.00 4.44
2173 2612 8.175716 CCTCTGTTCATTTTTATAAGTCGGTTC 58.824 37.037 0.00 0.00 0.00 3.62
2174 2613 8.610248 TCTGTTCATTTTTATAAGTCGGTTCA 57.390 30.769 0.00 0.00 0.00 3.18
2175 2614 8.500773 TCTGTTCATTTTTATAAGTCGGTTCAC 58.499 33.333 0.00 0.00 0.00 3.18
2176 2615 8.155821 TGTTCATTTTTATAAGTCGGTTCACA 57.844 30.769 0.00 0.00 0.00 3.58
2177 2616 8.071368 TGTTCATTTTTATAAGTCGGTTCACAC 58.929 33.333 0.00 0.00 0.00 3.82
2178 2617 7.731882 TCATTTTTATAAGTCGGTTCACACA 57.268 32.000 0.00 0.00 0.00 3.72
2179 2618 8.155821 TCATTTTTATAAGTCGGTTCACACAA 57.844 30.769 0.00 0.00 0.00 3.33
2180 2619 8.286800 TCATTTTTATAAGTCGGTTCACACAAG 58.713 33.333 0.00 0.00 0.00 3.16
2181 2620 7.556733 TTTTTATAAGTCGGTTCACACAAGT 57.443 32.000 0.00 0.00 0.00 3.16
2200 2639 7.840342 ACAAGTGAAATTGTGTTATTTTGCA 57.160 28.000 0.00 0.00 41.76 4.08
2201 2640 8.436046 ACAAGTGAAATTGTGTTATTTTGCAT 57.564 26.923 0.00 0.00 41.76 3.96
2202 2641 9.539825 ACAAGTGAAATTGTGTTATTTTGCATA 57.460 25.926 0.00 0.00 41.76 3.14
2203 2642 9.796062 CAAGTGAAATTGTGTTATTTTGCATAC 57.204 29.630 0.00 0.00 0.00 2.39
2204 2643 9.762933 AAGTGAAATTGTGTTATTTTGCATACT 57.237 25.926 0.00 0.00 0.00 2.12
2205 2644 9.195411 AGTGAAATTGTGTTATTTTGCATACTG 57.805 29.630 0.00 0.00 0.00 2.74
2206 2645 8.977505 GTGAAATTGTGTTATTTTGCATACTGT 58.022 29.630 0.00 0.00 0.00 3.55
2207 2646 9.539825 TGAAATTGTGTTATTTTGCATACTGTT 57.460 25.926 0.00 0.00 0.00 3.16
2210 2649 9.539825 AATTGTGTTATTTTGCATACTGTTTGA 57.460 25.926 2.29 0.00 0.00 2.69
2211 2650 8.932945 TTGTGTTATTTTGCATACTGTTTGAA 57.067 26.923 2.29 0.00 0.00 2.69
2212 2651 8.932945 TGTGTTATTTTGCATACTGTTTGAAA 57.067 26.923 2.29 0.00 0.00 2.69
2213 2652 8.812329 TGTGTTATTTTGCATACTGTTTGAAAC 58.188 29.630 0.14 0.14 0.00 2.78
2214 2653 8.812329 GTGTTATTTTGCATACTGTTTGAAACA 58.188 29.630 10.65 10.65 39.52 2.83
2215 2654 9.539825 TGTTATTTTGCATACTGTTTGAAACAT 57.460 25.926 11.58 4.93 41.26 2.71
2217 2656 9.979578 TTATTTTGCATACTGTTTGAAACATCT 57.020 25.926 11.58 2.66 41.26 2.90
2219 2658 8.795786 TTTTGCATACTGTTTGAAACATCTAC 57.204 30.769 11.58 1.81 41.26 2.59
2220 2659 7.503521 TTGCATACTGTTTGAAACATCTACA 57.496 32.000 11.58 4.31 41.26 2.74
2221 2660 7.503521 TGCATACTGTTTGAAACATCTACAA 57.496 32.000 11.58 0.00 41.26 2.41
2222 2661 7.935520 TGCATACTGTTTGAAACATCTACAAA 58.064 30.769 11.58 0.00 41.26 2.83
2223 2662 8.075574 TGCATACTGTTTGAAACATCTACAAAG 58.924 33.333 11.58 0.00 41.26 2.77
2224 2663 7.538678 GCATACTGTTTGAAACATCTACAAAGG 59.461 37.037 11.58 0.00 41.26 3.11
2225 2664 5.831997 ACTGTTTGAAACATCTACAAAGGC 58.168 37.500 11.58 0.00 41.26 4.35
2226 2665 5.594317 ACTGTTTGAAACATCTACAAAGGCT 59.406 36.000 11.58 0.00 41.26 4.58
2227 2666 6.096846 ACTGTTTGAAACATCTACAAAGGCTT 59.903 34.615 11.58 0.00 41.26 4.35
2228 2667 7.284489 ACTGTTTGAAACATCTACAAAGGCTTA 59.716 33.333 11.58 0.00 41.26 3.09
2229 2668 8.177119 TGTTTGAAACATCTACAAAGGCTTAT 57.823 30.769 6.66 0.00 36.25 1.73
2230 2669 9.290988 TGTTTGAAACATCTACAAAGGCTTATA 57.709 29.630 6.66 0.00 36.25 0.98
2237 2676 9.515226 AACATCTACAAAGGCTTATAAAAGTGA 57.485 29.630 0.00 0.00 34.99 3.41
2238 2677 9.515226 ACATCTACAAAGGCTTATAAAAGTGAA 57.485 29.630 0.00 0.00 34.99 3.18
2239 2678 9.774742 CATCTACAAAGGCTTATAAAAGTGAAC 57.225 33.333 0.00 0.00 34.99 3.18
2240 2679 8.911918 TCTACAAAGGCTTATAAAAGTGAACA 57.088 30.769 0.00 0.00 34.99 3.18
2241 2680 8.999431 TCTACAAAGGCTTATAAAAGTGAACAG 58.001 33.333 0.00 0.00 34.99 3.16
2242 2681 7.817418 ACAAAGGCTTATAAAAGTGAACAGA 57.183 32.000 0.00 0.00 34.99 3.41
2243 2682 7.875971 ACAAAGGCTTATAAAAGTGAACAGAG 58.124 34.615 0.00 0.00 34.99 3.35
2244 2683 7.040409 ACAAAGGCTTATAAAAGTGAACAGAGG 60.040 37.037 0.00 0.00 34.99 3.69
2264 2703 3.712218 AGGGAGTAGTAGAATTCTTGGGC 59.288 47.826 14.36 2.73 0.00 5.36
2277 2716 2.104170 TCTTGGGCTTTGTTCGGTTTT 58.896 42.857 0.00 0.00 0.00 2.43
2278 2717 2.159170 TCTTGGGCTTTGTTCGGTTTTG 60.159 45.455 0.00 0.00 0.00 2.44
2281 2724 0.927537 GGCTTTGTTCGGTTTTGTGC 59.072 50.000 0.00 0.00 0.00 4.57
2336 2785 2.668457 CACTAGTGCAAGGTTAGCGAAG 59.332 50.000 10.54 0.00 33.85 3.79
2353 2802 1.329906 GAAGCTGCCGAATGTCAGATG 59.670 52.381 0.00 0.00 32.26 2.90
2371 2820 0.380733 TGAGATGCCGCGTACAGTAG 59.619 55.000 4.92 0.00 0.00 2.57
2393 2842 2.952310 AGCGGCAAGAAGAGTTTTCTTT 59.048 40.909 5.94 0.00 43.63 2.52
2394 2843 3.003793 AGCGGCAAGAAGAGTTTTCTTTC 59.996 43.478 5.94 1.90 43.63 2.62
2395 2844 3.003793 GCGGCAAGAAGAGTTTTCTTTCT 59.996 43.478 5.94 0.00 43.63 2.52
2396 2845 4.498177 GCGGCAAGAAGAGTTTTCTTTCTT 60.498 41.667 5.94 0.00 43.63 2.52
2397 2846 4.972440 CGGCAAGAAGAGTTTTCTTTCTTG 59.028 41.667 17.37 17.37 43.63 3.02
2398 2847 5.449177 CGGCAAGAAGAGTTTTCTTTCTTGT 60.449 40.000 20.67 0.94 44.66 3.16
2399 2848 6.238374 CGGCAAGAAGAGTTTTCTTTCTTGTA 60.238 38.462 20.67 0.00 44.66 2.41
2505 2954 0.945743 TACACAGCAAGCAGAGCACG 60.946 55.000 0.00 0.00 0.00 5.34
2540 2990 4.201980 GGTTTCCTTTTCACACACCAGTAC 60.202 45.833 0.00 0.00 0.00 2.73
2542 2992 5.617528 TTCCTTTTCACACACCAGTACTA 57.382 39.130 0.00 0.00 0.00 1.82
2678 3129 9.670180 CATCGTTTTTGTTTCTTGTTTCTAAAC 57.330 29.630 0.00 0.00 39.33 2.01
2689 3140 6.884832 TCTTGTTTCTAAACTCTCTTGTGGA 58.115 36.000 7.09 0.00 39.59 4.02
2690 3141 6.986817 TCTTGTTTCTAAACTCTCTTGTGGAG 59.013 38.462 7.09 0.00 39.59 3.86
2691 3142 6.235231 TGTTTCTAAACTCTCTTGTGGAGT 57.765 37.500 7.09 0.00 44.73 3.85
2696 3147 2.918712 ACTCTCTTGTGGAGTTGTGG 57.081 50.000 0.00 0.00 40.65 4.17
2697 3148 2.119495 ACTCTCTTGTGGAGTTGTGGT 58.881 47.619 0.00 0.00 40.65 4.16
2698 3149 2.158900 ACTCTCTTGTGGAGTTGTGGTG 60.159 50.000 0.00 0.00 40.65 4.17
2699 3150 1.837439 TCTCTTGTGGAGTTGTGGTGT 59.163 47.619 0.00 0.00 42.40 4.16
2700 3151 2.238646 TCTCTTGTGGAGTTGTGGTGTT 59.761 45.455 0.00 0.00 42.40 3.32
2701 3152 2.355756 CTCTTGTGGAGTTGTGGTGTTG 59.644 50.000 0.00 0.00 37.30 3.33
2728 3179 2.940158 ACCCAGACCCACAAGTTTTAC 58.060 47.619 0.00 0.00 0.00 2.01
2792 3243 5.234116 GTGTAACAATTGTTGCCTTTTCTGG 59.766 40.000 29.72 0.00 39.42 3.86
2863 3314 2.167861 GTTGCCGGACGAGCTGATC 61.168 63.158 5.05 0.00 0.00 2.92
2880 3331 0.930310 ATCGCATGACCGACATTTCG 59.070 50.000 0.00 0.00 45.44 3.46
2912 3363 3.861840 ACGAGTTAACACATCCATCCTG 58.138 45.455 8.61 0.00 0.00 3.86
2992 3443 3.014304 TCAGGCTGTTAGAGATACCGT 57.986 47.619 15.27 0.00 0.00 4.83
2994 3445 3.767673 TCAGGCTGTTAGAGATACCGTTT 59.232 43.478 15.27 0.00 0.00 3.60
2997 3448 3.181493 GGCTGTTAGAGATACCGTTTCGA 60.181 47.826 0.00 0.00 0.00 3.71
2999 3450 4.860907 GCTGTTAGAGATACCGTTTCGAAA 59.139 41.667 6.47 6.47 0.00 3.46
3064 3520 5.983540 TCTTGCCAACAAAAACTATGGTTT 58.016 33.333 0.65 0.65 46.27 3.27
3113 3569 4.946772 TCCAATTCACCTTGATTTCGCATA 59.053 37.500 0.00 0.00 0.00 3.14
3117 3573 5.739752 TTCACCTTGATTTCGCATATCAG 57.260 39.130 0.00 0.00 33.83 2.90
3137 3593 2.029828 AGTAGCGTGTTTCTGGACTCTG 60.030 50.000 0.00 0.00 0.00 3.35
3139 3595 0.861837 GCGTGTTTCTGGACTCTGTG 59.138 55.000 0.00 0.00 0.00 3.66
3231 3690 0.605083 ATGCTCTGTCTCTGTGCGAA 59.395 50.000 0.00 0.00 0.00 4.70
3243 3702 1.872952 CTGTGCGAACCAATTGTCTCA 59.127 47.619 4.43 0.00 0.00 3.27
3251 3710 4.319046 CGAACCAATTGTCTCAGTCAACTG 60.319 45.833 4.43 3.69 45.08 3.16
3252 3711 2.880890 ACCAATTGTCTCAGTCAACTGC 59.119 45.455 4.43 0.00 43.46 4.40
3270 3733 1.887320 GCGTGTGCATGATTTCAGAC 58.113 50.000 0.00 0.00 42.15 3.51
3271 3734 1.466167 GCGTGTGCATGATTTCAGACT 59.534 47.619 0.00 0.00 42.15 3.24
3272 3735 2.726989 GCGTGTGCATGATTTCAGACTG 60.727 50.000 0.00 0.00 42.15 3.51
3273 3736 2.738314 CGTGTGCATGATTTCAGACTGA 59.262 45.455 0.00 0.00 0.00 3.41
3274 3737 3.373130 CGTGTGCATGATTTCAGACTGAT 59.627 43.478 5.87 0.00 0.00 2.90
3275 3738 4.142752 CGTGTGCATGATTTCAGACTGATT 60.143 41.667 5.87 0.00 0.00 2.57
3276 3739 5.618418 CGTGTGCATGATTTCAGACTGATTT 60.618 40.000 5.87 0.00 0.00 2.17
3277 3740 5.571741 GTGTGCATGATTTCAGACTGATTTG 59.428 40.000 5.87 1.74 0.00 2.32
3278 3741 5.100259 GTGCATGATTTCAGACTGATTTGG 58.900 41.667 5.87 0.00 0.00 3.28
3279 3742 5.011586 TGCATGATTTCAGACTGATTTGGA 58.988 37.500 5.87 0.00 0.00 3.53
3280 3743 5.477637 TGCATGATTTCAGACTGATTTGGAA 59.522 36.000 5.87 0.00 0.00 3.53
3281 3744 6.034591 GCATGATTTCAGACTGATTTGGAAG 58.965 40.000 5.87 0.00 0.00 3.46
3282 3745 6.127814 GCATGATTTCAGACTGATTTGGAAGA 60.128 38.462 5.87 0.00 0.00 2.87
3283 3746 7.416438 GCATGATTTCAGACTGATTTGGAAGAT 60.416 37.037 5.87 0.00 0.00 2.40
3284 3747 7.387119 TGATTTCAGACTGATTTGGAAGATG 57.613 36.000 5.87 0.00 0.00 2.90
3285 3748 5.633830 TTTCAGACTGATTTGGAAGATGC 57.366 39.130 5.87 0.00 0.00 3.91
3286 3749 3.614092 TCAGACTGATTTGGAAGATGCC 58.386 45.455 0.00 0.00 0.00 4.40
3287 3750 3.009363 TCAGACTGATTTGGAAGATGCCA 59.991 43.478 0.00 0.00 35.78 4.92
3288 3751 3.760151 CAGACTGATTTGGAAGATGCCAA 59.240 43.478 0.00 0.00 45.77 4.52
3289 3752 3.760684 AGACTGATTTGGAAGATGCCAAC 59.239 43.478 0.00 0.00 46.99 3.77
3290 3753 2.827921 ACTGATTTGGAAGATGCCAACC 59.172 45.455 0.00 0.00 46.99 3.77
3291 3754 3.094572 CTGATTTGGAAGATGCCAACCT 58.905 45.455 0.00 0.00 46.99 3.50
3292 3755 2.827322 TGATTTGGAAGATGCCAACCTG 59.173 45.455 0.00 0.00 46.99 4.00
3293 3756 0.968405 TTTGGAAGATGCCAACCTGC 59.032 50.000 0.00 0.00 46.99 4.85
3294 3757 0.178967 TTGGAAGATGCCAACCTGCA 60.179 50.000 0.00 0.00 42.75 4.41
3306 3769 2.613691 CAACCTGCAGATTGATTTGGC 58.386 47.619 16.42 0.00 0.00 4.52
3363 3831 5.180868 GCTTCTCTGAATTATCCGCATTCAT 59.819 40.000 0.00 0.00 39.40 2.57
3451 3919 1.063469 GCGTTGAACCGGTGGATTATG 59.937 52.381 8.52 0.00 0.00 1.90
3539 4007 9.893305 AAGTGCTGTTTACAAAATCATAAGTAC 57.107 29.630 0.00 0.00 0.00 2.73
3540 4008 9.062524 AGTGCTGTTTACAAAATCATAAGTACA 57.937 29.630 0.00 0.00 0.00 2.90
3541 4009 9.113876 GTGCTGTTTACAAAATCATAAGTACAC 57.886 33.333 0.00 0.00 0.00 2.90
3542 4010 8.012809 TGCTGTTTACAAAATCATAAGTACACG 58.987 33.333 0.00 0.00 0.00 4.49
3627 4096 2.428569 GCTTCGTGTCGAGTCGCA 60.429 61.111 7.92 6.61 37.14 5.10
3628 4097 2.014554 GCTTCGTGTCGAGTCGCAA 61.015 57.895 7.92 0.00 37.14 4.85
3688 4158 2.732844 TGGTGCTGCATCCAATCATA 57.267 45.000 17.61 0.00 0.00 2.15
3689 4159 3.015675 TGGTGCTGCATCCAATCATAA 57.984 42.857 17.61 0.00 0.00 1.90
3731 4201 5.390673 CGCGATCTGAACTACCGTCTTATAT 60.391 44.000 0.00 0.00 0.00 0.86
3732 4202 6.183360 CGCGATCTGAACTACCGTCTTATATA 60.183 42.308 0.00 0.00 0.00 0.86
3733 4203 7.181418 GCGATCTGAACTACCGTCTTATATAG 58.819 42.308 0.00 0.00 0.00 1.31
3788 4258 5.023533 TCAGAAGAACATGCAGGTATACC 57.976 43.478 14.54 14.54 0.00 2.73
3811 4281 5.748152 CCTTCTGAATCTGAGAGAATCGTTC 59.252 44.000 0.00 0.00 42.67 3.95
3812 4282 4.914540 TCTGAATCTGAGAGAATCGTTCG 58.085 43.478 0.00 0.00 42.67 3.95
3813 4283 4.396478 TCTGAATCTGAGAGAATCGTTCGT 59.604 41.667 0.00 0.00 42.67 3.85
3814 4284 5.060662 TGAATCTGAGAGAATCGTTCGTT 57.939 39.130 0.00 0.00 42.67 3.85
3822 4292 1.897398 GAATCGTTCGTTGGCAGCGT 61.897 55.000 22.76 2.61 0.00 5.07
3862 4332 6.240894 ACTCCATATTCTTTGAGCTTGAACA 58.759 36.000 0.00 0.00 0.00 3.18
3863 4333 6.373774 ACTCCATATTCTTTGAGCTTGAACAG 59.626 38.462 0.00 0.00 0.00 3.16
3864 4334 6.240894 TCCATATTCTTTGAGCTTGAACAGT 58.759 36.000 0.00 0.00 0.00 3.55
3865 4335 7.394016 TCCATATTCTTTGAGCTTGAACAGTA 58.606 34.615 0.00 0.00 0.00 2.74
3866 4336 7.882791 TCCATATTCTTTGAGCTTGAACAGTAA 59.117 33.333 0.00 0.00 0.00 2.24
3867 4337 8.514594 CCATATTCTTTGAGCTTGAACAGTAAA 58.485 33.333 0.00 0.00 0.00 2.01
3868 4338 9.334693 CATATTCTTTGAGCTTGAACAGTAAAC 57.665 33.333 0.00 0.00 0.00 2.01
3869 4339 7.573968 ATTCTTTGAGCTTGAACAGTAAACT 57.426 32.000 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.399075 TCCCCTCCTTTTGTCCGTTC 59.601 55.000 0.00 0.00 0.00 3.95
10 11 0.909623 TCGATCCCCTCCTTTTGTCC 59.090 55.000 0.00 0.00 0.00 4.02
31 32 2.167693 ACGACTTCCACTGTCAACTCAA 59.832 45.455 0.00 0.00 34.37 3.02
32 33 1.754803 ACGACTTCCACTGTCAACTCA 59.245 47.619 0.00 0.00 34.37 3.41
33 34 2.034812 AGACGACTTCCACTGTCAACTC 59.965 50.000 0.00 0.00 34.37 3.01
34 35 2.032620 AGACGACTTCCACTGTCAACT 58.967 47.619 0.00 0.00 34.37 3.16
35 36 2.510768 AGACGACTTCCACTGTCAAC 57.489 50.000 0.00 0.00 34.37 3.18
58 61 2.126071 CGTGTGTCGGTAGGCTGG 60.126 66.667 0.00 0.00 35.71 4.85
75 78 2.433318 GGACGACTCCTGTGCTGC 60.433 66.667 0.00 0.00 33.07 5.25
126 139 7.625553 CGATAAGAAGATGTCAACTGAATTCC 58.374 38.462 2.27 0.00 0.00 3.01
152 165 5.866633 GCCATGGATAGATCTCTTAAAGACG 59.133 44.000 18.40 0.00 36.65 4.18
171 184 2.936919 TAGCCATAGGTCAAGCCATG 57.063 50.000 0.00 0.00 40.61 3.66
192 205 3.634225 TGGTAACTGCCGTAGGTGTGC 62.634 57.143 0.00 0.00 46.61 4.57
204 217 0.447801 GCAAGATGCGGTGGTAACTG 59.552 55.000 0.00 0.00 31.71 3.16
231 244 1.966451 GGTTGGGTCGTTGGCTCTG 60.966 63.158 0.00 0.00 0.00 3.35
278 295 4.808649 CCGCTCCGGTTCTAGAAC 57.191 61.111 24.73 24.73 42.73 3.01
306 323 1.448985 AATGTGAACGATCAACCGGG 58.551 50.000 6.32 0.00 37.30 5.73
355 372 1.272490 TGAGGTTCAAGCTAGTCACCG 59.728 52.381 0.00 0.00 32.32 4.94
364 381 2.599082 CGACGATAAGTGAGGTTCAAGC 59.401 50.000 0.00 0.00 0.00 4.01
383 400 1.415374 GTGAACTGTAAAGCGAGCGA 58.585 50.000 0.00 0.00 0.00 4.93
413 430 2.086054 AGCTCTTTCGCCAACACTAG 57.914 50.000 0.00 0.00 0.00 2.57
414 431 3.671008 TTAGCTCTTTCGCCAACACTA 57.329 42.857 0.00 0.00 0.00 2.74
415 432 2.543777 TTAGCTCTTTCGCCAACACT 57.456 45.000 0.00 0.00 0.00 3.55
416 433 2.665794 GCTTTAGCTCTTTCGCCAACAC 60.666 50.000 0.00 0.00 38.21 3.32
439 469 2.040714 TCTGCGTGTAGTAACGTGTG 57.959 50.000 0.00 0.00 45.32 3.82
508 538 2.757077 GGGAATATCAGGGCCGGG 59.243 66.667 2.18 0.00 0.00 5.73
509 539 2.757077 GGGGAATATCAGGGCCGG 59.243 66.667 0.00 0.00 0.00 6.13
510 540 2.757077 GGGGGAATATCAGGGCCG 59.243 66.667 0.00 0.00 0.00 6.13
511 541 2.757077 CGGGGGAATATCAGGGCC 59.243 66.667 0.00 0.00 0.00 5.80
512 542 2.034221 GCGGGGGAATATCAGGGC 59.966 66.667 0.00 0.00 0.00 5.19
513 543 2.347490 CGCGGGGGAATATCAGGG 59.653 66.667 0.00 0.00 0.00 4.45
530 560 0.608035 TTGGGGTGAACGGAATCTGC 60.608 55.000 0.00 0.00 0.00 4.26
544 574 1.080569 GCATGTGAAAGCGTTGGGG 60.081 57.895 0.00 0.00 0.00 4.96
586 616 9.429359 ACTAGAAATACAGTTCTCATCAAAGTG 57.571 33.333 0.00 0.00 38.75 3.16
625 692 0.759346 AGAGCCAACACGGAAACTCT 59.241 50.000 0.00 0.00 36.56 3.24
649 716 2.438021 AGTTTCTGGGTAGCACTCACAA 59.562 45.455 0.00 0.00 0.00 3.33
660 727 1.152756 AGGCGCAAAGTTTCTGGGT 60.153 52.632 10.83 0.00 0.00 4.51
693 762 1.728069 GAGATAGCGTCCGTCTGCA 59.272 57.895 0.00 0.00 0.00 4.41
770 852 2.032681 GGTGCGCTTCCCTTGTCT 59.967 61.111 9.73 0.00 0.00 3.41
772 854 2.594592 GTGGTGCGCTTCCCTTGT 60.595 61.111 9.73 0.00 0.00 3.16
773 855 3.365265 GGTGGTGCGCTTCCCTTG 61.365 66.667 9.73 0.00 0.00 3.61
774 856 3.553095 GAGGTGGTGCGCTTCCCTT 62.553 63.158 9.73 2.33 0.00 3.95
775 857 4.021925 GAGGTGGTGCGCTTCCCT 62.022 66.667 9.73 8.65 0.00 4.20
858 940 7.533289 TGTTTTATAAAAGGGAGGAAACTGG 57.467 36.000 10.92 0.00 44.43 4.00
918 1000 4.426313 TGCTCGGCTCTCTCGGGA 62.426 66.667 0.00 0.00 0.00 5.14
919 1001 3.898509 CTGCTCGGCTCTCTCGGG 61.899 72.222 0.00 0.00 0.00 5.14
920 1002 2.826287 TCTGCTCGGCTCTCTCGG 60.826 66.667 0.00 0.00 0.00 4.63
921 1003 1.817520 TCTCTGCTCGGCTCTCTCG 60.818 63.158 0.00 0.00 0.00 4.04
922 1004 1.029408 TGTCTCTGCTCGGCTCTCTC 61.029 60.000 0.00 0.00 0.00 3.20
946 1052 0.725784 CGGCGTGTGTTTGATCTTGC 60.726 55.000 0.00 0.00 0.00 4.01
1026 1178 1.380380 CATCACCTTGGCCCCCTTC 60.380 63.158 0.00 0.00 0.00 3.46
1255 1407 4.740822 GTTGCCCGACCATGCCCT 62.741 66.667 0.00 0.00 0.00 5.19
1693 1869 3.014085 TTACCTCCTCCTTGGCGCG 62.014 63.158 0.00 0.00 35.26 6.86
1696 1872 0.035343 GTGGTTACCTCCTCCTTGGC 60.035 60.000 2.07 0.00 35.26 4.52
1724 1904 5.468658 AGGGTAGTAGGAGCAGTAATCAAT 58.531 41.667 0.00 0.00 0.00 2.57
1726 1906 4.537945 AGGGTAGTAGGAGCAGTAATCA 57.462 45.455 0.00 0.00 0.00 2.57
1727 1907 4.894114 TGAAGGGTAGTAGGAGCAGTAATC 59.106 45.833 0.00 0.00 0.00 1.75
1728 1908 4.880164 TGAAGGGTAGTAGGAGCAGTAAT 58.120 43.478 0.00 0.00 0.00 1.89
1729 1909 4.326600 TGAAGGGTAGTAGGAGCAGTAA 57.673 45.455 0.00 0.00 0.00 2.24
1730 1910 4.326600 TTGAAGGGTAGTAGGAGCAGTA 57.673 45.455 0.00 0.00 0.00 2.74
1731 1911 2.921834 TGAAGGGTAGTAGGAGCAGT 57.078 50.000 0.00 0.00 0.00 4.40
1732 1912 4.162320 TGATTTGAAGGGTAGTAGGAGCAG 59.838 45.833 0.00 0.00 0.00 4.24
1733 1913 4.101114 TGATTTGAAGGGTAGTAGGAGCA 58.899 43.478 0.00 0.00 0.00 4.26
1734 1914 4.755266 TGATTTGAAGGGTAGTAGGAGC 57.245 45.455 0.00 0.00 0.00 4.70
1735 1915 6.889198 TGATTGATTTGAAGGGTAGTAGGAG 58.111 40.000 0.00 0.00 0.00 3.69
1736 1916 6.884472 TGATTGATTTGAAGGGTAGTAGGA 57.116 37.500 0.00 0.00 0.00 2.94
1737 1917 8.525290 AATTGATTGATTTGAAGGGTAGTAGG 57.475 34.615 0.00 0.00 0.00 3.18
1739 1919 9.627123 CCTAATTGATTGATTTGAAGGGTAGTA 57.373 33.333 0.00 0.00 0.00 1.82
1740 1920 7.068716 GCCTAATTGATTGATTTGAAGGGTAGT 59.931 37.037 0.00 0.00 0.00 2.73
1741 1921 7.428826 GCCTAATTGATTGATTTGAAGGGTAG 58.571 38.462 0.00 0.00 0.00 3.18
1742 1922 6.323739 GGCCTAATTGATTGATTTGAAGGGTA 59.676 38.462 0.00 0.00 0.00 3.69
1743 1923 5.129320 GGCCTAATTGATTGATTTGAAGGGT 59.871 40.000 0.00 0.00 0.00 4.34
1744 1924 5.453762 GGGCCTAATTGATTGATTTGAAGGG 60.454 44.000 0.84 0.00 0.00 3.95
1745 1925 5.129155 TGGGCCTAATTGATTGATTTGAAGG 59.871 40.000 4.53 0.00 0.00 3.46
1765 1945 1.097547 CACGTGGAGAATGGATGGGC 61.098 60.000 7.95 0.00 0.00 5.36
1827 2007 9.825109 TTCTGTGGAACGAATATAATTCATGTA 57.175 29.630 0.00 0.00 42.39 2.29
1874 2059 4.695455 GCAGATGTTGGAGTAGCAAGTAAA 59.305 41.667 0.00 0.00 0.00 2.01
1879 2064 2.857186 TGCAGATGTTGGAGTAGCAA 57.143 45.000 0.00 0.00 0.00 3.91
1880 2065 3.354948 AATGCAGATGTTGGAGTAGCA 57.645 42.857 0.00 0.00 34.78 3.49
1881 2066 4.708726 AAAATGCAGATGTTGGAGTAGC 57.291 40.909 0.00 0.00 0.00 3.58
1882 2067 7.383102 AGTAAAAATGCAGATGTTGGAGTAG 57.617 36.000 0.00 0.00 0.00 2.57
1883 2068 7.592938 CAAGTAAAAATGCAGATGTTGGAGTA 58.407 34.615 0.00 0.00 0.00 2.59
1884 2069 6.449698 CAAGTAAAAATGCAGATGTTGGAGT 58.550 36.000 0.00 0.00 0.00 3.85
1885 2070 5.346822 GCAAGTAAAAATGCAGATGTTGGAG 59.653 40.000 0.00 0.00 42.12 3.86
1886 2071 5.010922 AGCAAGTAAAAATGCAGATGTTGGA 59.989 36.000 0.00 0.00 44.95 3.53
1887 2072 5.232463 AGCAAGTAAAAATGCAGATGTTGG 58.768 37.500 0.00 0.00 44.95 3.77
1888 2073 7.086376 AGTAGCAAGTAAAAATGCAGATGTTG 58.914 34.615 0.00 0.00 44.95 3.33
1889 2074 7.219484 AGTAGCAAGTAAAAATGCAGATGTT 57.781 32.000 0.00 0.00 44.95 2.71
1890 2075 6.127897 GGAGTAGCAAGTAAAAATGCAGATGT 60.128 38.462 0.00 0.00 44.95 3.06
1891 2076 6.127925 TGGAGTAGCAAGTAAAAATGCAGATG 60.128 38.462 0.00 0.00 44.95 2.90
1892 2077 5.945784 TGGAGTAGCAAGTAAAAATGCAGAT 59.054 36.000 0.00 0.00 44.95 2.90
1893 2078 5.312895 TGGAGTAGCAAGTAAAAATGCAGA 58.687 37.500 0.00 0.00 44.95 4.26
1894 2079 5.627499 TGGAGTAGCAAGTAAAAATGCAG 57.373 39.130 0.00 0.00 44.95 4.41
1895 2080 5.534654 AGTTGGAGTAGCAAGTAAAAATGCA 59.465 36.000 0.00 0.00 44.95 3.96
1981 2183 8.090831 GGCCAAGATTTTTGTTTCTTCTTCTAT 58.909 33.333 0.00 0.00 29.85 1.98
2035 2237 2.953466 TCCAACGAGTATTTCCGGAG 57.047 50.000 3.34 0.00 0.00 4.63
2106 2545 8.012957 ACGTACTCTCTCCATCTGAATAAATT 57.987 34.615 0.00 0.00 0.00 1.82
2111 2550 6.358178 TCTAACGTACTCTCTCCATCTGAAT 58.642 40.000 0.00 0.00 0.00 2.57
2113 2552 5.354842 TCTAACGTACTCTCTCCATCTGA 57.645 43.478 0.00 0.00 0.00 3.27
2115 2554 9.661563 CTATAATCTAACGTACTCTCTCCATCT 57.338 37.037 0.00 0.00 0.00 2.90
2118 2557 9.703892 GTACTATAATCTAACGTACTCTCTCCA 57.296 37.037 0.00 0.00 0.00 3.86
2130 2569 9.352191 TGAACAGAGGGAGTACTATAATCTAAC 57.648 37.037 0.00 0.00 0.00 2.34
2140 2579 9.892130 CTTATAAAAATGAACAGAGGGAGTACT 57.108 33.333 0.00 0.00 0.00 2.73
2141 2580 9.668497 ACTTATAAAAATGAACAGAGGGAGTAC 57.332 33.333 0.00 0.00 0.00 2.73
2142 2581 9.886132 GACTTATAAAAATGAACAGAGGGAGTA 57.114 33.333 0.00 0.00 0.00 2.59
2143 2582 7.549488 CGACTTATAAAAATGAACAGAGGGAGT 59.451 37.037 0.00 0.00 0.00 3.85
2144 2583 7.011482 CCGACTTATAAAAATGAACAGAGGGAG 59.989 40.741 0.00 0.00 0.00 4.30
2145 2584 6.821665 CCGACTTATAAAAATGAACAGAGGGA 59.178 38.462 0.00 0.00 0.00 4.20
2146 2585 6.598064 ACCGACTTATAAAAATGAACAGAGGG 59.402 38.462 0.00 0.00 0.00 4.30
2147 2586 7.611213 ACCGACTTATAAAAATGAACAGAGG 57.389 36.000 0.00 0.00 0.00 3.69
2148 2587 8.717821 TGAACCGACTTATAAAAATGAACAGAG 58.282 33.333 0.00 0.00 0.00 3.35
2149 2588 8.500773 GTGAACCGACTTATAAAAATGAACAGA 58.499 33.333 0.00 0.00 0.00 3.41
2150 2589 8.286800 TGTGAACCGACTTATAAAAATGAACAG 58.713 33.333 0.00 0.00 0.00 3.16
2151 2590 8.071368 GTGTGAACCGACTTATAAAAATGAACA 58.929 33.333 0.00 0.00 0.00 3.18
2152 2591 8.071368 TGTGTGAACCGACTTATAAAAATGAAC 58.929 33.333 0.00 0.00 0.00 3.18
2153 2592 8.155821 TGTGTGAACCGACTTATAAAAATGAA 57.844 30.769 0.00 0.00 0.00 2.57
2154 2593 7.731882 TGTGTGAACCGACTTATAAAAATGA 57.268 32.000 0.00 0.00 0.00 2.57
2155 2594 8.073768 ACTTGTGTGAACCGACTTATAAAAATG 58.926 33.333 0.00 0.00 0.00 2.32
2156 2595 8.073768 CACTTGTGTGAACCGACTTATAAAAAT 58.926 33.333 0.00 0.00 46.55 1.82
2157 2596 7.411274 CACTTGTGTGAACCGACTTATAAAAA 58.589 34.615 0.00 0.00 46.55 1.94
2158 2597 6.950545 CACTTGTGTGAACCGACTTATAAAA 58.049 36.000 0.00 0.00 46.55 1.52
2159 2598 6.533819 CACTTGTGTGAACCGACTTATAAA 57.466 37.500 0.00 0.00 46.55 1.40
2176 2615 7.840342 TGCAAAATAACACAATTTCACTTGT 57.160 28.000 0.00 0.00 39.91 3.16
2177 2616 9.796062 GTATGCAAAATAACACAATTTCACTTG 57.204 29.630 0.00 0.00 0.00 3.16
2178 2617 9.762933 AGTATGCAAAATAACACAATTTCACTT 57.237 25.926 0.00 0.00 0.00 3.16
2179 2618 9.195411 CAGTATGCAAAATAACACAATTTCACT 57.805 29.630 0.00 0.00 0.00 3.41
2180 2619 8.977505 ACAGTATGCAAAATAACACAATTTCAC 58.022 29.630 0.00 0.00 42.53 3.18
2181 2620 9.539825 AACAGTATGCAAAATAACACAATTTCA 57.460 25.926 0.00 0.00 42.53 2.69
2184 2623 9.539825 TCAAACAGTATGCAAAATAACACAATT 57.460 25.926 0.00 0.00 42.53 2.32
2185 2624 9.539825 TTCAAACAGTATGCAAAATAACACAAT 57.460 25.926 0.00 0.00 42.53 2.71
2186 2625 8.932945 TTCAAACAGTATGCAAAATAACACAA 57.067 26.923 0.00 0.00 42.53 3.33
2187 2626 8.812329 GTTTCAAACAGTATGCAAAATAACACA 58.188 29.630 0.00 0.00 42.53 3.72
2188 2627 8.812329 TGTTTCAAACAGTATGCAAAATAACAC 58.188 29.630 0.00 0.00 42.53 3.32
2189 2628 8.932945 TGTTTCAAACAGTATGCAAAATAACA 57.067 26.923 0.00 0.00 42.53 2.41
2191 2630 9.979578 AGATGTTTCAAACAGTATGCAAAATAA 57.020 25.926 9.27 0.00 45.95 1.40
2193 2632 9.410556 GTAGATGTTTCAAACAGTATGCAAAAT 57.589 29.630 9.27 0.00 45.95 1.82
2194 2633 8.409371 TGTAGATGTTTCAAACAGTATGCAAAA 58.591 29.630 9.27 0.00 45.95 2.44
2195 2634 7.935520 TGTAGATGTTTCAAACAGTATGCAAA 58.064 30.769 9.27 0.00 45.95 3.68
2196 2635 7.503521 TGTAGATGTTTCAAACAGTATGCAA 57.496 32.000 9.27 0.00 45.95 4.08
2197 2636 7.503521 TTGTAGATGTTTCAAACAGTATGCA 57.496 32.000 9.27 4.26 45.95 3.96
2198 2637 7.538678 CCTTTGTAGATGTTTCAAACAGTATGC 59.461 37.037 9.27 1.75 45.95 3.14
2199 2638 7.538678 GCCTTTGTAGATGTTTCAAACAGTATG 59.461 37.037 9.27 0.00 45.95 2.39
2200 2639 7.448469 AGCCTTTGTAGATGTTTCAAACAGTAT 59.552 33.333 9.27 0.00 45.95 2.12
2201 2640 6.770785 AGCCTTTGTAGATGTTTCAAACAGTA 59.229 34.615 9.27 0.26 45.95 2.74
2202 2641 5.594317 AGCCTTTGTAGATGTTTCAAACAGT 59.406 36.000 9.27 1.24 45.95 3.55
2203 2642 6.076981 AGCCTTTGTAGATGTTTCAAACAG 57.923 37.500 9.27 0.00 45.95 3.16
2204 2643 6.463995 AAGCCTTTGTAGATGTTTCAAACA 57.536 33.333 5.18 5.18 46.94 2.83
2211 2650 9.515226 TCACTTTTATAAGCCTTTGTAGATGTT 57.485 29.630 0.00 0.00 34.60 2.71
2212 2651 9.515226 TTCACTTTTATAAGCCTTTGTAGATGT 57.485 29.630 0.00 0.00 34.60 3.06
2213 2652 9.774742 GTTCACTTTTATAAGCCTTTGTAGATG 57.225 33.333 0.00 0.00 34.60 2.90
2214 2653 9.515226 TGTTCACTTTTATAAGCCTTTGTAGAT 57.485 29.630 0.00 0.00 34.60 1.98
2215 2654 8.911918 TGTTCACTTTTATAAGCCTTTGTAGA 57.088 30.769 0.00 0.00 34.60 2.59
2216 2655 8.999431 TCTGTTCACTTTTATAAGCCTTTGTAG 58.001 33.333 0.00 0.00 34.60 2.74
2217 2656 8.911918 TCTGTTCACTTTTATAAGCCTTTGTA 57.088 30.769 0.00 0.00 34.60 2.41
2218 2657 7.040409 CCTCTGTTCACTTTTATAAGCCTTTGT 60.040 37.037 0.00 0.00 34.60 2.83
2219 2658 7.308435 CCTCTGTTCACTTTTATAAGCCTTTG 58.692 38.462 0.00 0.00 34.60 2.77
2220 2659 6.434340 CCCTCTGTTCACTTTTATAAGCCTTT 59.566 38.462 0.00 0.00 34.60 3.11
2221 2660 5.946377 CCCTCTGTTCACTTTTATAAGCCTT 59.054 40.000 0.00 0.00 34.60 4.35
2222 2661 5.250774 TCCCTCTGTTCACTTTTATAAGCCT 59.749 40.000 0.00 0.00 34.60 4.58
2223 2662 5.497474 TCCCTCTGTTCACTTTTATAAGCC 58.503 41.667 0.00 0.00 34.60 4.35
2224 2663 6.174049 ACTCCCTCTGTTCACTTTTATAAGC 58.826 40.000 0.00 0.00 34.60 3.09
2225 2664 8.532819 ACTACTCCCTCTGTTCACTTTTATAAG 58.467 37.037 0.00 0.00 37.40 1.73
2226 2665 8.431910 ACTACTCCCTCTGTTCACTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
2227 2666 9.186837 CTACTACTCCCTCTGTTCACTTTTATA 57.813 37.037 0.00 0.00 0.00 0.98
2228 2667 6.936968 ACTACTCCCTCTGTTCACTTTTAT 57.063 37.500 0.00 0.00 0.00 1.40
2229 2668 7.236529 TCTACTACTCCCTCTGTTCACTTTTA 58.763 38.462 0.00 0.00 0.00 1.52
2230 2669 6.075984 TCTACTACTCCCTCTGTTCACTTTT 58.924 40.000 0.00 0.00 0.00 2.27
2231 2670 5.642165 TCTACTACTCCCTCTGTTCACTTT 58.358 41.667 0.00 0.00 0.00 2.66
2232 2671 5.258216 TCTACTACTCCCTCTGTTCACTT 57.742 43.478 0.00 0.00 0.00 3.16
2233 2672 4.931027 TCTACTACTCCCTCTGTTCACT 57.069 45.455 0.00 0.00 0.00 3.41
2234 2673 6.378848 AGAATTCTACTACTCCCTCTGTTCAC 59.621 42.308 6.06 0.00 0.00 3.18
2235 2674 6.494952 AGAATTCTACTACTCCCTCTGTTCA 58.505 40.000 6.06 0.00 0.00 3.18
2236 2675 7.262048 CAAGAATTCTACTACTCCCTCTGTTC 58.738 42.308 8.75 0.00 0.00 3.18
2237 2676 6.155393 CCAAGAATTCTACTACTCCCTCTGTT 59.845 42.308 8.75 0.00 0.00 3.16
2238 2677 5.659079 CCAAGAATTCTACTACTCCCTCTGT 59.341 44.000 8.75 0.00 0.00 3.41
2239 2678 5.069781 CCCAAGAATTCTACTACTCCCTCTG 59.930 48.000 8.75 0.00 0.00 3.35
2240 2679 5.212745 CCCAAGAATTCTACTACTCCCTCT 58.787 45.833 8.75 0.00 0.00 3.69
2241 2680 4.202274 GCCCAAGAATTCTACTACTCCCTC 60.202 50.000 8.75 0.00 0.00 4.30
2242 2681 3.712218 GCCCAAGAATTCTACTACTCCCT 59.288 47.826 8.75 0.00 0.00 4.20
2243 2682 3.712218 AGCCCAAGAATTCTACTACTCCC 59.288 47.826 8.75 0.00 0.00 4.30
2244 2683 5.360649 AAGCCCAAGAATTCTACTACTCC 57.639 43.478 8.75 0.00 0.00 3.85
2264 2703 1.902840 ACGCACAAAACCGAACAAAG 58.097 45.000 0.00 0.00 0.00 2.77
2281 2724 2.068837 TTCTACTGCGGTAACCAACG 57.931 50.000 6.88 0.00 0.00 4.10
2336 2785 0.935898 CTCATCTGACATTCGGCAGC 59.064 55.000 0.00 0.00 32.27 5.25
2353 2802 0.661552 TCTACTGTACGCGGCATCTC 59.338 55.000 12.47 0.00 0.00 2.75
2371 2820 2.147150 AGAAAACTCTTCTTGCCGCTC 58.853 47.619 0.00 0.00 0.00 5.03
2542 2992 9.227777 GGTTACTAACTCCAGTTGTTAAATGAT 57.772 33.333 2.01 0.00 38.90 2.45
2640 3090 0.527565 AAACGATGGGCAGCATCAAC 59.472 50.000 0.00 0.00 0.00 3.18
2678 3129 2.158900 ACACCACAACTCCACAAGAGAG 60.159 50.000 0.00 0.00 46.50 3.20
2689 3140 2.230266 GGTTCAACACAACACCACAACT 59.770 45.455 0.00 0.00 0.00 3.16
2690 3141 2.601804 GGTTCAACACAACACCACAAC 58.398 47.619 0.00 0.00 0.00 3.32
2691 3142 1.546476 GGGTTCAACACAACACCACAA 59.454 47.619 0.00 0.00 0.00 3.33
2692 3143 1.178276 GGGTTCAACACAACACCACA 58.822 50.000 0.00 0.00 0.00 4.17
2693 3144 1.134175 CTGGGTTCAACACAACACCAC 59.866 52.381 0.00 0.00 26.79 4.16
2694 3145 1.004862 TCTGGGTTCAACACAACACCA 59.995 47.619 0.00 0.00 26.79 4.17
2695 3146 1.404035 GTCTGGGTTCAACACAACACC 59.596 52.381 0.00 0.00 26.79 4.16
2696 3147 1.404035 GGTCTGGGTTCAACACAACAC 59.596 52.381 0.00 0.00 26.79 3.32
2697 3148 1.683629 GGGTCTGGGTTCAACACAACA 60.684 52.381 0.00 0.00 26.79 3.33
2698 3149 1.029681 GGGTCTGGGTTCAACACAAC 58.970 55.000 0.00 0.00 26.79 3.32
2699 3150 0.626382 TGGGTCTGGGTTCAACACAA 59.374 50.000 0.00 0.00 26.79 3.33
2700 3151 0.106918 GTGGGTCTGGGTTCAACACA 60.107 55.000 0.00 0.00 0.00 3.72
2701 3152 0.106918 TGTGGGTCTGGGTTCAACAC 60.107 55.000 0.00 0.00 0.00 3.32
2781 3232 5.221925 ACAAGATTAGACTCCAGAAAAGGCA 60.222 40.000 0.00 0.00 0.00 4.75
2863 3314 4.953116 CGAAATGTCGGTCATGCG 57.047 55.556 0.00 0.00 43.81 4.73
3012 3463 7.914859 TGATGATCCAAGCATGTATCTCTAAT 58.085 34.615 0.00 0.00 0.00 1.73
3064 3520 2.261671 GGCGGCTTCTCGTCTTCA 59.738 61.111 0.00 0.00 0.00 3.02
3113 3569 2.563179 AGTCCAGAAACACGCTACTGAT 59.437 45.455 0.00 0.00 32.90 2.90
3117 3573 2.288273 ACAGAGTCCAGAAACACGCTAC 60.288 50.000 0.00 0.00 0.00 3.58
3137 3593 3.694566 AGAAAACACACAAGGGAGAACAC 59.305 43.478 0.00 0.00 0.00 3.32
3139 3595 4.157840 ACAAGAAAACACACAAGGGAGAAC 59.842 41.667 0.00 0.00 0.00 3.01
3231 3690 2.880890 GCAGTTGACTGAGACAATTGGT 59.119 45.455 18.00 0.00 46.59 3.67
3251 3710 1.466167 AGTCTGAAATCATGCACACGC 59.534 47.619 0.00 0.00 39.24 5.34
3252 3711 2.738314 TCAGTCTGAAATCATGCACACG 59.262 45.455 0.00 0.00 0.00 4.49
3268 3731 3.119352 GGTTGGCATCTTCCAAATCAGTC 60.119 47.826 0.00 0.00 46.63 3.51
3269 3732 2.827921 GGTTGGCATCTTCCAAATCAGT 59.172 45.455 0.00 0.00 46.63 3.41
3270 3733 3.094572 AGGTTGGCATCTTCCAAATCAG 58.905 45.455 0.00 0.00 46.63 2.90
3271 3734 2.827322 CAGGTTGGCATCTTCCAAATCA 59.173 45.455 0.00 0.00 46.63 2.57
3272 3735 2.417787 GCAGGTTGGCATCTTCCAAATC 60.418 50.000 0.00 0.00 46.63 2.17
3273 3736 1.551883 GCAGGTTGGCATCTTCCAAAT 59.448 47.619 0.00 0.00 46.63 2.32
3274 3737 0.968405 GCAGGTTGGCATCTTCCAAA 59.032 50.000 0.00 0.00 46.63 3.28
3275 3738 0.178967 TGCAGGTTGGCATCTTCCAA 60.179 50.000 0.00 0.00 43.36 3.53
3276 3739 0.609957 CTGCAGGTTGGCATCTTCCA 60.610 55.000 5.57 0.00 43.97 3.53
3277 3740 0.322816 TCTGCAGGTTGGCATCTTCC 60.323 55.000 15.13 0.00 43.97 3.46
3278 3741 1.760192 ATCTGCAGGTTGGCATCTTC 58.240 50.000 15.13 0.00 43.97 2.87
3279 3742 1.822990 CAATCTGCAGGTTGGCATCTT 59.177 47.619 28.73 0.00 43.97 2.40
3280 3743 1.005097 TCAATCTGCAGGTTGGCATCT 59.995 47.619 33.61 0.00 43.97 2.90
3281 3744 1.466856 TCAATCTGCAGGTTGGCATC 58.533 50.000 33.61 0.00 43.97 3.91
3282 3745 2.154567 ATCAATCTGCAGGTTGGCAT 57.845 45.000 33.61 20.94 43.97 4.40
3283 3746 1.927487 AATCAATCTGCAGGTTGGCA 58.073 45.000 33.61 19.69 42.53 4.92
3284 3747 2.613691 CAAATCAATCTGCAGGTTGGC 58.386 47.619 33.61 0.00 0.00 4.52
3285 3748 2.675889 GCCAAATCAATCTGCAGGTTGG 60.676 50.000 33.61 22.29 37.64 3.77
3286 3749 2.028839 TGCCAAATCAATCTGCAGGTTG 60.029 45.455 30.15 30.15 0.00 3.77
3287 3750 2.232941 CTGCCAAATCAATCTGCAGGTT 59.767 45.455 15.13 10.91 44.29 3.50
3288 3751 1.822990 CTGCCAAATCAATCTGCAGGT 59.177 47.619 15.13 2.68 44.29 4.00
3289 3752 2.579207 CTGCCAAATCAATCTGCAGG 57.421 50.000 15.13 0.00 44.29 4.85
3291 3754 2.159156 GCATCTGCCAAATCAATCTGCA 60.159 45.455 0.00 0.00 34.31 4.41
3292 3755 2.470821 GCATCTGCCAAATCAATCTGC 58.529 47.619 0.00 0.00 34.31 4.26
3306 3769 1.934220 CTGCAGCAGGTTGGCATCTG 61.934 60.000 15.35 12.28 36.87 2.90
3363 3831 3.497103 ATCATGCAGGGATCGAATGAA 57.503 42.857 0.00 0.00 31.49 2.57
3539 4007 2.128128 GACGACGCAGCAAACGTG 60.128 61.111 12.10 0.10 45.24 4.49
3541 4009 2.168621 CTGACGACGCAGCAAACG 59.831 61.111 0.00 0.00 0.00 3.60
3542 4010 1.083401 CACTGACGACGCAGCAAAC 60.083 57.895 15.95 0.00 39.51 2.93
3608 4077 2.504244 CGACTCGACACGAAGCCC 60.504 66.667 0.00 0.00 34.74 5.19
3620 4089 3.311596 ACCACTAAAAACACTTGCGACTC 59.688 43.478 0.00 0.00 0.00 3.36
3688 4158 2.031157 GCGTAACATGTGCAGGTTTCTT 60.031 45.455 7.52 0.00 36.63 2.52
3689 4159 1.535462 GCGTAACATGTGCAGGTTTCT 59.465 47.619 7.52 0.00 36.63 2.52
3788 4258 5.455201 CGAACGATTCTCTCAGATTCAGAAG 59.545 44.000 0.00 0.00 29.78 2.85
3811 4281 4.012895 GTCCACACGCTGCCAACG 62.013 66.667 0.00 0.00 0.00 4.10
3812 4282 2.591715 AGTCCACACGCTGCCAAC 60.592 61.111 0.00 0.00 0.00 3.77
3813 4283 2.280797 GAGTCCACACGCTGCCAA 60.281 61.111 0.00 0.00 0.00 4.52
3814 4284 3.233980 AGAGTCCACACGCTGCCA 61.234 61.111 0.00 0.00 30.29 4.92
3822 4292 4.047627 TGGAGTTATCTCAGAGTCCACA 57.952 45.455 3.10 0.00 39.77 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.