Multiple sequence alignment - TraesCS6A01G293100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G293100 chr6A 100.000 3032 0 0 1 3032 524580696 524583727 0.000000e+00 5600.0
1 TraesCS6A01G293100 chr6A 90.784 727 59 7 4 727 383915085 383915806 0.000000e+00 965.0
2 TraesCS6A01G293100 chr6A 89.863 730 67 6 1 727 178991514 178990789 0.000000e+00 931.0
3 TraesCS6A01G293100 chr6A 88.764 89 9 1 2177 2265 169203308 169203395 1.150000e-19 108.0
4 TraesCS6A01G293100 chr3A 95.927 1203 37 6 860 2057 10935433 10936628 0.000000e+00 1940.0
5 TraesCS6A01G293100 chr3A 89.877 731 65 8 1 727 348417085 348416360 0.000000e+00 931.0
6 TraesCS6A01G293100 chr3A 94.118 119 6 1 733 851 10935334 10935451 2.400000e-41 180.0
7 TraesCS6A01G293100 chr5B 93.165 1346 47 9 728 2073 27384557 27383257 0.000000e+00 1934.0
8 TraesCS6A01G293100 chr5B 91.250 80 6 1 2186 2265 624198382 624198304 1.150000e-19 108.0
9 TraesCS6A01G293100 chr5B 91.250 80 6 1 2186 2265 627798780 627798702 1.150000e-19 108.0
10 TraesCS6A01G293100 chr2D 90.746 778 51 6 2266 3030 605448868 605448099 0.000000e+00 1018.0
11 TraesCS6A01G293100 chr2D 89.486 428 41 4 2269 2693 168451455 168451029 3.440000e-149 538.0
12 TraesCS6A01G293100 chr2D 92.251 271 21 0 2760 3030 168432182 168431912 4.740000e-103 385.0
13 TraesCS6A01G293100 chr2D 78.366 453 76 11 1573 2008 449578679 449578232 1.070000e-69 274.0
14 TraesCS6A01G293100 chr2D 76.380 326 59 11 2719 3030 3425604 3425283 3.130000e-35 159.0
15 TraesCS6A01G293100 chr2D 82.353 119 14 6 2915 3030 640718022 640718136 2.490000e-16 97.1
16 TraesCS6A01G293100 chr2D 89.583 48 5 0 1196 1243 449578528 449578481 9.080000e-06 62.1
17 TraesCS6A01G293100 chr7D 89.514 782 61 11 2266 3030 536594022 536593245 0.000000e+00 970.0
18 TraesCS6A01G293100 chr7D 92.500 80 5 1 2186 2265 124625122 124625044 2.470000e-21 113.0
19 TraesCS6A01G293100 chr4A 89.905 733 65 6 1 727 188537606 188538335 0.000000e+00 935.0
20 TraesCS6A01G293100 chr4A 89.660 735 63 10 1 727 114765204 114765933 0.000000e+00 924.0
21 TraesCS6A01G293100 chr2A 89.782 734 62 9 1 727 163068201 163067474 0.000000e+00 928.0
22 TraesCS6A01G293100 chr2A 89.660 735 65 7 1 727 719424504 719423773 0.000000e+00 926.0
23 TraesCS6A01G293100 chr2A 89.726 730 66 6 4 727 514694818 514694092 0.000000e+00 924.0
24 TraesCS6A01G293100 chr2A 80.090 442 79 7 1573 2008 593353745 593354183 1.360000e-83 320.0
25 TraesCS6A01G293100 chr2A 89.655 87 7 2 2179 2265 55949982 55949898 3.200000e-20 110.0
26 TraesCS6A01G293100 chr2A 85.294 68 10 0 1177 1244 593353868 593353935 1.510000e-08 71.3
27 TraesCS6A01G293100 chr1A 89.796 735 60 10 1 727 304328567 304327840 0.000000e+00 928.0
28 TraesCS6A01G293100 chr3D 84.447 778 92 5 2266 3030 253140714 253141475 0.000000e+00 739.0
29 TraesCS6A01G293100 chr7B 84.021 776 113 6 2266 3030 750138222 750137447 0.000000e+00 736.0
30 TraesCS6A01G293100 chr7B 89.655 87 8 1 2183 2269 693170007 693170092 3.200000e-20 110.0
31 TraesCS6A01G293100 chr7B 89.535 86 8 1 2180 2265 131183234 131183318 1.150000e-19 108.0
32 TraesCS6A01G293100 chr7B 92.157 51 2 2 2224 2274 255035274 255035322 1.510000e-08 71.3
33 TraesCS6A01G293100 chr3B 84.448 598 76 8 2265 2848 304514988 304514394 9.430000e-160 573.0
34 TraesCS6A01G293100 chr3B 87.778 90 10 1 2177 2266 452283115 452283203 1.490000e-18 104.0
35 TraesCS6A01G293100 chr5A 79.270 685 101 22 2284 2941 567895173 567894503 9.980000e-120 440.0
36 TraesCS6A01G293100 chr5A 89.773 88 7 2 2179 2265 670270015 670269929 8.890000e-21 111.0
37 TraesCS6A01G293100 chr5A 94.444 36 1 1 2749 2784 477540700 477540734 2.000000e-03 54.7
38 TraesCS6A01G293100 chr2B 82.127 442 70 7 1573 2008 528794669 528795107 1.330000e-98 370.0
39 TraesCS6A01G293100 chr2B 82.022 89 15 1 1156 1244 528794772 528794859 1.170000e-09 75.0
40 TraesCS6A01G293100 chr1B 85.567 97 8 5 2180 2274 339366360 339366452 2.490000e-16 97.1
41 TraesCS6A01G293100 chr4D 88.000 50 6 0 2953 3002 506510134 506510085 3.260000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G293100 chr6A 524580696 524583727 3031 False 5600 5600 100.0000 1 3032 1 chr6A.!!$F3 3031
1 TraesCS6A01G293100 chr6A 383915085 383915806 721 False 965 965 90.7840 4 727 1 chr6A.!!$F2 723
2 TraesCS6A01G293100 chr6A 178990789 178991514 725 True 931 931 89.8630 1 727 1 chr6A.!!$R1 726
3 TraesCS6A01G293100 chr3A 10935334 10936628 1294 False 1060 1940 95.0225 733 2057 2 chr3A.!!$F1 1324
4 TraesCS6A01G293100 chr3A 348416360 348417085 725 True 931 931 89.8770 1 727 1 chr3A.!!$R1 726
5 TraesCS6A01G293100 chr5B 27383257 27384557 1300 True 1934 1934 93.1650 728 2073 1 chr5B.!!$R1 1345
6 TraesCS6A01G293100 chr2D 605448099 605448868 769 True 1018 1018 90.7460 2266 3030 1 chr2D.!!$R4 764
7 TraesCS6A01G293100 chr7D 536593245 536594022 777 True 970 970 89.5140 2266 3030 1 chr7D.!!$R2 764
8 TraesCS6A01G293100 chr4A 188537606 188538335 729 False 935 935 89.9050 1 727 1 chr4A.!!$F2 726
9 TraesCS6A01G293100 chr4A 114765204 114765933 729 False 924 924 89.6600 1 727 1 chr4A.!!$F1 726
10 TraesCS6A01G293100 chr2A 163067474 163068201 727 True 928 928 89.7820 1 727 1 chr2A.!!$R2 726
11 TraesCS6A01G293100 chr2A 719423773 719424504 731 True 926 926 89.6600 1 727 1 chr2A.!!$R4 726
12 TraesCS6A01G293100 chr2A 514694092 514694818 726 True 924 924 89.7260 4 727 1 chr2A.!!$R3 723
13 TraesCS6A01G293100 chr1A 304327840 304328567 727 True 928 928 89.7960 1 727 1 chr1A.!!$R1 726
14 TraesCS6A01G293100 chr3D 253140714 253141475 761 False 739 739 84.4470 2266 3030 1 chr3D.!!$F1 764
15 TraesCS6A01G293100 chr7B 750137447 750138222 775 True 736 736 84.0210 2266 3030 1 chr7B.!!$R1 764
16 TraesCS6A01G293100 chr3B 304514394 304514988 594 True 573 573 84.4480 2265 2848 1 chr3B.!!$R1 583
17 TraesCS6A01G293100 chr5A 567894503 567895173 670 True 440 440 79.2700 2284 2941 1 chr5A.!!$R1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 111 1.792949 CGTGAGCGCTAAAGTTTCTGT 59.207 47.619 11.50 0.00 0.0 3.41 F
1837 1860 0.390340 GACAATGGACAGCGCTCTCA 60.390 55.000 14.84 10.32 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 1931 0.320334 ACATCACCACGTCGCATTCA 60.320 50.0 0.00 0.0 0.00 2.57 R
2661 2723 0.176680 GTGAGAGGGTGCACATCGAT 59.823 55.0 20.43 0.0 35.19 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.932207 ATTAATCATCTGCAAAAAGAATCAACA 57.068 25.926 0.00 0.00 0.00 3.33
59 60 6.089283 GCAAAAAGAATCAACATAATCGCACA 59.911 34.615 0.00 0.00 0.00 4.57
63 64 5.423015 AGAATCAACATAATCGCACACTCT 58.577 37.500 0.00 0.00 0.00 3.24
64 65 5.521735 AGAATCAACATAATCGCACACTCTC 59.478 40.000 0.00 0.00 0.00 3.20
65 66 3.521560 TCAACATAATCGCACACTCTCC 58.478 45.455 0.00 0.00 0.00 3.71
66 67 2.209838 ACATAATCGCACACTCTCCG 57.790 50.000 0.00 0.00 0.00 4.63
108 111 1.792949 CGTGAGCGCTAAAGTTTCTGT 59.207 47.619 11.50 0.00 0.00 3.41
161 164 4.263949 CCCAAGTCTTCCCAAAGGTTCTAT 60.264 45.833 0.00 0.00 33.03 1.98
208 211 7.168219 AGCATAAAACCACATCTAAACAGAGA 58.832 34.615 0.00 0.00 0.00 3.10
299 303 2.331194 ACAAGCGCTATCGTTTAACGT 58.669 42.857 12.05 7.49 43.14 3.99
458 464 7.770897 AGAAATTCATTCGTAGCATAAGGTTCT 59.229 33.333 0.00 0.00 43.15 3.01
480 486 9.394477 GTTCTTTAATGATAGCGAAAAAGTTGT 57.606 29.630 0.00 0.00 0.00 3.32
481 487 9.959749 TTCTTTAATGATAGCGAAAAAGTTGTT 57.040 25.926 0.00 0.00 0.00 2.83
495 502 9.279904 CGAAAAAGTTGTTGTGAACACTTATTA 57.720 29.630 6.51 0.00 41.97 0.98
528 538 6.122277 TCCGCATTTTCCTTAGAAGATTCAT 58.878 36.000 0.00 0.00 32.35 2.57
572 586 5.869753 ACATAAGCTTTGCAACTCTAGTG 57.130 39.130 3.20 4.68 0.00 2.74
623 638 3.149981 AGAAAAGCAGACCCTAAGTTGC 58.850 45.455 0.00 0.00 34.60 4.17
809 826 8.530804 AGAGGGATTAATGGAATGAAAAGAAG 57.469 34.615 0.00 0.00 0.00 2.85
845 862 5.587388 AATCAATTCCATCAATTCACGCT 57.413 34.783 0.00 0.00 31.79 5.07
846 863 6.698008 AATCAATTCCATCAATTCACGCTA 57.302 33.333 0.00 0.00 31.79 4.26
847 864 5.484173 TCAATTCCATCAATTCACGCTAC 57.516 39.130 0.00 0.00 31.79 3.58
848 865 5.185454 TCAATTCCATCAATTCACGCTACT 58.815 37.500 0.00 0.00 31.79 2.57
849 866 5.647658 TCAATTCCATCAATTCACGCTACTT 59.352 36.000 0.00 0.00 31.79 2.24
850 867 6.150976 TCAATTCCATCAATTCACGCTACTTT 59.849 34.615 0.00 0.00 31.79 2.66
851 868 5.957842 TTCCATCAATTCACGCTACTTTT 57.042 34.783 0.00 0.00 0.00 2.27
852 869 5.957842 TCCATCAATTCACGCTACTTTTT 57.042 34.783 0.00 0.00 0.00 1.94
912 929 7.094848 CCTTTTATTGATTTGCCGGAAATTGTT 60.095 33.333 5.05 0.84 34.18 2.83
974 997 4.741239 ATCACACCCCTCCCGGCT 62.741 66.667 0.00 0.00 0.00 5.52
1135 1158 2.412323 CCCGGCTACGACTACTGCA 61.412 63.158 0.00 0.00 44.60 4.41
1139 1162 1.001268 CGGCTACGACTACTGCATGAT 60.001 52.381 0.00 0.00 44.60 2.45
1344 1367 4.592192 CTCATGGCCGGACGCGAT 62.592 66.667 15.93 0.00 38.94 4.58
1414 1437 1.895798 TCAACTGCTTCATCGTCCTCT 59.104 47.619 0.00 0.00 0.00 3.69
1463 1486 2.945398 CTAGCGCAGGAGAACTCGGC 62.945 65.000 11.47 0.00 0.00 5.54
1510 1533 1.000938 GGGAAATTGCGATGCTGATCC 60.001 52.381 0.00 0.00 0.00 3.36
1822 1845 3.543884 GACCGTATGGGCAAGACAA 57.456 52.632 0.37 0.00 45.78 3.18
1837 1860 0.390340 GACAATGGACAGCGCTCTCA 60.390 55.000 14.84 10.32 0.00 3.27
1908 1931 0.250038 ATGCCTCGCGTGATGCTATT 60.250 50.000 23.54 8.86 43.27 1.73
2040 2063 0.734889 CTGGCCATTGATCGGTCAAC 59.265 55.000 14.50 1.15 46.43 3.18
2043 2070 0.734889 GCCATTGATCGGTCAACCTG 59.265 55.000 14.50 9.17 46.43 4.00
2053 2080 0.961019 GGTCAACCTGCATGCTTTCA 59.039 50.000 20.33 0.00 0.00 2.69
2092 2119 9.436957 AATAATACCTAAATGATTCCTAGTGCG 57.563 33.333 0.00 0.00 0.00 5.34
2093 2120 3.467803 ACCTAAATGATTCCTAGTGCGC 58.532 45.455 0.00 0.00 0.00 6.09
2094 2121 2.476619 CCTAAATGATTCCTAGTGCGCG 59.523 50.000 0.00 0.00 0.00 6.86
2095 2122 2.024176 AAATGATTCCTAGTGCGCGT 57.976 45.000 8.43 0.00 0.00 6.01
2096 2123 1.290203 AATGATTCCTAGTGCGCGTG 58.710 50.000 8.43 0.00 0.00 5.34
2097 2124 1.154205 ATGATTCCTAGTGCGCGTGC 61.154 55.000 15.48 15.48 43.20 5.34
2107 2134 2.395690 GCGCGTGCACTATGTCAC 59.604 61.111 17.66 0.00 42.15 3.67
2114 2141 1.588404 GTGCACTATGTCACGGAATCG 59.412 52.381 10.32 0.00 43.02 3.34
2115 2142 1.474879 TGCACTATGTCACGGAATCGA 59.525 47.619 0.00 0.00 40.11 3.59
2116 2143 2.120232 GCACTATGTCACGGAATCGAG 58.880 52.381 0.00 0.00 40.11 4.04
2117 2144 2.120232 CACTATGTCACGGAATCGAGC 58.880 52.381 0.00 0.00 40.11 5.03
2118 2145 1.268589 ACTATGTCACGGAATCGAGCG 60.269 52.381 0.00 0.00 40.11 5.03
2119 2146 0.594028 TATGTCACGGAATCGAGCGC 60.594 55.000 0.00 0.00 40.11 5.92
2120 2147 2.202623 GTCACGGAATCGAGCGCT 60.203 61.111 11.27 11.27 40.11 5.92
2121 2148 2.102357 TCACGGAATCGAGCGCTC 59.898 61.111 27.64 27.64 40.11 5.03
2122 2149 2.202610 CACGGAATCGAGCGCTCA 60.203 61.111 34.69 22.54 40.11 4.26
2123 2150 2.202623 ACGGAATCGAGCGCTCAC 60.203 61.111 34.69 21.65 40.11 3.51
2124 2151 3.315521 CGGAATCGAGCGCTCACG 61.316 66.667 34.69 23.72 39.79 4.35
2138 2165 3.598330 CGCTCACGCTAAAAGATAAAGC 58.402 45.455 0.00 0.00 0.00 3.51
2139 2166 3.062099 CGCTCACGCTAAAAGATAAAGCA 59.938 43.478 0.00 0.00 35.98 3.91
2140 2167 4.435518 CGCTCACGCTAAAAGATAAAGCAA 60.436 41.667 0.00 0.00 35.98 3.91
2141 2168 5.024555 GCTCACGCTAAAAGATAAAGCAAG 58.975 41.667 0.00 0.00 35.98 4.01
2142 2169 5.545658 TCACGCTAAAAGATAAAGCAAGG 57.454 39.130 0.00 0.00 35.98 3.61
2143 2170 5.242434 TCACGCTAAAAGATAAAGCAAGGA 58.758 37.500 0.00 0.00 35.98 3.36
2144 2171 5.121768 TCACGCTAAAAGATAAAGCAAGGAC 59.878 40.000 0.00 0.00 35.98 3.85
2145 2172 5.001232 ACGCTAAAAGATAAAGCAAGGACA 58.999 37.500 0.00 0.00 35.98 4.02
2146 2173 5.106673 ACGCTAAAAGATAAAGCAAGGACAC 60.107 40.000 0.00 0.00 35.98 3.67
2147 2174 5.641709 GCTAAAAGATAAAGCAAGGACACC 58.358 41.667 0.00 0.00 36.26 4.16
2148 2175 4.766404 AAAAGATAAAGCAAGGACACCG 57.234 40.909 0.00 0.00 0.00 4.94
2149 2176 2.403252 AGATAAAGCAAGGACACCGG 57.597 50.000 0.00 0.00 0.00 5.28
2150 2177 0.733150 GATAAAGCAAGGACACCGGC 59.267 55.000 0.00 0.00 0.00 6.13
2151 2178 0.679960 ATAAAGCAAGGACACCGGCC 60.680 55.000 0.00 0.00 30.99 6.13
2165 2192 2.766651 GGCCGGTGGGGATGAGTA 60.767 66.667 1.90 0.00 38.47 2.59
2166 2193 2.147387 GGCCGGTGGGGATGAGTAT 61.147 63.158 1.90 0.00 38.47 2.12
2167 2194 0.834687 GGCCGGTGGGGATGAGTATA 60.835 60.000 1.90 0.00 38.47 1.47
2168 2195 0.320697 GCCGGTGGGGATGAGTATAC 59.679 60.000 1.90 0.00 38.47 1.47
2169 2196 0.601558 CCGGTGGGGATGAGTATACG 59.398 60.000 0.00 0.00 38.47 3.06
2170 2197 1.325355 CGGTGGGGATGAGTATACGT 58.675 55.000 0.00 0.00 0.00 3.57
2171 2198 1.000607 CGGTGGGGATGAGTATACGTG 60.001 57.143 0.00 0.00 0.00 4.49
2172 2199 2.037144 GGTGGGGATGAGTATACGTGT 58.963 52.381 0.00 0.00 0.00 4.49
2173 2200 2.223971 GGTGGGGATGAGTATACGTGTG 60.224 54.545 0.00 0.00 0.00 3.82
2174 2201 2.036387 TGGGGATGAGTATACGTGTGG 58.964 52.381 0.00 0.00 0.00 4.17
2175 2202 1.343465 GGGGATGAGTATACGTGTGGG 59.657 57.143 0.00 0.00 0.00 4.61
2176 2203 2.313317 GGGATGAGTATACGTGTGGGA 58.687 52.381 0.00 0.00 0.00 4.37
2177 2204 2.296471 GGGATGAGTATACGTGTGGGAG 59.704 54.545 0.00 0.00 0.00 4.30
2178 2205 2.288273 GGATGAGTATACGTGTGGGAGC 60.288 54.545 0.00 0.00 0.00 4.70
2179 2206 2.139323 TGAGTATACGTGTGGGAGCT 57.861 50.000 0.00 0.00 0.00 4.09
2180 2207 3.286329 TGAGTATACGTGTGGGAGCTA 57.714 47.619 0.00 0.00 0.00 3.32
2181 2208 3.828921 TGAGTATACGTGTGGGAGCTAT 58.171 45.455 0.00 0.00 0.00 2.97
2182 2209 4.212716 TGAGTATACGTGTGGGAGCTATT 58.787 43.478 0.00 0.00 0.00 1.73
2183 2210 4.277672 TGAGTATACGTGTGGGAGCTATTC 59.722 45.833 0.00 0.00 0.00 1.75
2184 2211 4.471548 AGTATACGTGTGGGAGCTATTCT 58.528 43.478 0.00 0.00 0.00 2.40
2185 2212 4.519730 AGTATACGTGTGGGAGCTATTCTC 59.480 45.833 0.00 0.00 41.15 2.87
2186 2213 1.853963 ACGTGTGGGAGCTATTCTCT 58.146 50.000 0.00 0.00 41.60 3.10
2187 2214 1.751924 ACGTGTGGGAGCTATTCTCTC 59.248 52.381 0.00 0.00 42.82 3.20
2193 2220 2.804697 GGAGCTATTCTCTCCGTTCC 57.195 55.000 0.00 0.00 40.51 3.62
2194 2221 2.032620 GGAGCTATTCTCTCCGTTCCA 58.967 52.381 0.00 0.00 40.51 3.53
2195 2222 2.630580 GGAGCTATTCTCTCCGTTCCAT 59.369 50.000 0.00 0.00 40.51 3.41
2196 2223 3.827302 GGAGCTATTCTCTCCGTTCCATA 59.173 47.826 0.00 0.00 40.51 2.74
2197 2224 4.281182 GGAGCTATTCTCTCCGTTCCATAA 59.719 45.833 0.00 0.00 40.51 1.90
2198 2225 5.046950 GGAGCTATTCTCTCCGTTCCATAAT 60.047 44.000 0.00 0.00 40.51 1.28
2199 2226 5.788450 AGCTATTCTCTCCGTTCCATAATG 58.212 41.667 0.00 0.00 0.00 1.90
2200 2227 5.305644 AGCTATTCTCTCCGTTCCATAATGT 59.694 40.000 0.00 0.00 0.00 2.71
2201 2228 6.493802 AGCTATTCTCTCCGTTCCATAATGTA 59.506 38.462 0.00 0.00 0.00 2.29
2202 2229 7.015292 AGCTATTCTCTCCGTTCCATAATGTAA 59.985 37.037 0.00 0.00 0.00 2.41
2203 2230 7.329717 GCTATTCTCTCCGTTCCATAATGTAAG 59.670 40.741 0.00 0.00 0.00 2.34
2204 2231 6.785337 TTCTCTCCGTTCCATAATGTAAGA 57.215 37.500 0.00 0.00 0.00 2.10
2205 2232 6.145338 TCTCTCCGTTCCATAATGTAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
2206 2233 5.655090 TCTCTCCGTTCCATAATGTAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
2207 2234 6.323996 TCTCTCCGTTCCATAATGTAAGACAT 59.676 38.462 0.00 0.00 41.31 3.06
2209 2236 7.335627 TCTCCGTTCCATAATGTAAGACATTT 58.664 34.615 9.92 0.00 45.80 2.32
2210 2237 7.827236 TCTCCGTTCCATAATGTAAGACATTTT 59.173 33.333 9.92 0.33 45.80 1.82
2211 2238 8.343168 TCCGTTCCATAATGTAAGACATTTTT 57.657 30.769 9.92 0.00 45.80 1.94
2260 2287 4.872664 GTCTTACATTATGAGACGGAGGG 58.127 47.826 0.00 0.00 34.53 4.30
2261 2288 3.895656 TCTTACATTATGAGACGGAGGGG 59.104 47.826 0.00 0.00 0.00 4.79
2262 2289 1.424638 ACATTATGAGACGGAGGGGG 58.575 55.000 0.00 0.00 0.00 5.40
2263 2290 1.344087 ACATTATGAGACGGAGGGGGT 60.344 52.381 0.00 0.00 0.00 4.95
2294 2321 6.694447 ACAAAGAATTAGAGTTGCATGCAAT 58.306 32.000 33.94 22.54 38.28 3.56
2298 2325 5.884232 AGAATTAGAGTTGCATGCAATCTGA 59.116 36.000 32.75 28.95 38.28 3.27
2313 2343 4.218635 GCAATCTGAGTCCGTATATGAGGA 59.781 45.833 0.00 0.00 0.00 3.71
2334 2365 1.374631 GACACGGAGCACAGCATGA 60.375 57.895 0.00 0.00 39.69 3.07
2336 2367 0.321919 ACACGGAGCACAGCATGAAT 60.322 50.000 0.00 0.00 39.69 2.57
2338 2369 2.009051 CACGGAGCACAGCATGAATTA 58.991 47.619 0.00 0.00 39.69 1.40
2345 2376 6.204359 GGAGCACAGCATGAATTACATTTAG 58.796 40.000 0.00 0.00 39.69 1.85
2399 2431 7.294017 ACTCCACAATCAAATGTCAGAATTT 57.706 32.000 0.00 0.00 0.00 1.82
2629 2665 4.935352 AGCCATGACAAAAGCAACTTTA 57.065 36.364 0.00 0.00 31.99 1.85
2727 2809 0.468226 GCCCCACCGAAGATATGTGA 59.532 55.000 0.00 0.00 0.00 3.58
2747 2829 4.879545 GTGAAACCTAGTCTGTTGTTCCAA 59.120 41.667 0.00 0.00 0.00 3.53
2837 2923 1.102154 CAACAGACCAGGTTGCACAA 58.898 50.000 0.00 0.00 39.16 3.33
2848 2934 2.438021 AGGTTGCACAAGGTCTGTTAGA 59.562 45.455 0.00 0.00 35.47 2.10
2849 2935 3.073062 AGGTTGCACAAGGTCTGTTAGAT 59.927 43.478 0.00 0.00 35.47 1.98
2859 2945 8.304596 CACAAGGTCTGTTAGATAGTTGACTAA 58.695 37.037 0.00 0.00 35.47 2.24
2871 2957 2.152016 GTTGACTAAGGCAACAGACCC 58.848 52.381 10.99 0.00 43.77 4.46
2910 2996 5.355596 TCGCAAGATTTGTTGGTGAAAAAT 58.644 33.333 0.00 0.00 45.01 1.82
2912 2998 6.980978 TCGCAAGATTTGTTGGTGAAAAATTA 59.019 30.769 0.00 0.00 45.01 1.40
2947 3033 6.023603 AGGGTAGAGAAAAGTTGTCCATAGA 58.976 40.000 0.00 0.00 0.00 1.98
2986 3072 5.833667 CACATCTCACTAGTAGGGATGGTTA 59.166 44.000 25.74 4.13 38.33 2.85
3003 3089 2.289565 GTTAGGATGGGTTGCTAGCAC 58.710 52.381 19.17 12.59 31.15 4.40
3005 3091 1.879575 AGGATGGGTTGCTAGCACTA 58.120 50.000 19.17 5.25 0.00 2.74
3030 3116 2.565834 ACTACATATCCATGGGGTACGC 59.434 50.000 13.02 0.29 43.69 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.112113 ACCGGAGAGTGTGCGATTAT 58.888 50.000 9.46 0.00 44.08 1.28
75 77 1.023513 GCTCACGAGATTTGCTGCCT 61.024 55.000 0.00 0.00 0.00 4.75
119 122 3.008594 TGGGGAAAGTCTTTGCGATCTTA 59.991 43.478 10.33 0.00 0.00 2.10
161 164 5.293079 GCTTTTAATCAGTGTTTGTGCCAAA 59.707 36.000 0.00 0.00 0.00 3.28
231 234 7.524294 TTGTTTCTTGCTTTTTGATTCTGTC 57.476 32.000 0.00 0.00 0.00 3.51
245 248 9.018716 CAACCCAATTTTATTTTTGTTTCTTGC 57.981 29.630 0.00 0.00 0.00 4.01
272 276 0.179111 CGATAGCGCTTGTTGGGAGA 60.179 55.000 18.68 0.00 0.00 3.71
330 334 7.977818 TGCCTATCAAAGATGACAATACCTAT 58.022 34.615 0.00 0.00 38.69 2.57
410 416 5.542635 TCTTGACTTCTTGCCTAGGAGTTTA 59.457 40.000 14.75 0.00 43.11 2.01
458 464 8.963130 CACAACAACTTTTTCGCTATCATTAAA 58.037 29.630 0.00 0.00 0.00 1.52
481 487 8.664798 CGGATCTCAAATTAATAAGTGTTCACA 58.335 33.333 5.74 0.00 0.00 3.58
495 502 5.665916 AAGGAAAATGCGGATCTCAAATT 57.334 34.783 0.00 0.00 0.00 1.82
560 574 2.042569 TCCTCCTACCACTAGAGTTGCA 59.957 50.000 0.00 0.00 0.00 4.08
723 740 3.420300 TTACGATGGCCACCTGTTAAA 57.580 42.857 8.16 0.00 0.00 1.52
849 866 6.317789 AGCGTGAATTGATTCTCTCAAAAA 57.682 33.333 5.42 0.00 46.62 1.94
850 867 5.947228 AGCGTGAATTGATTCTCTCAAAA 57.053 34.783 5.42 0.00 46.62 2.44
851 868 6.166279 AGTAGCGTGAATTGATTCTCTCAAA 58.834 36.000 5.42 0.00 46.62 2.69
853 870 5.330455 AGTAGCGTGAATTGATTCTCTCA 57.670 39.130 5.42 0.00 37.67 3.27
854 871 6.091441 ACAAAGTAGCGTGAATTGATTCTCTC 59.909 38.462 5.42 0.00 37.67 3.20
855 872 5.934625 ACAAAGTAGCGTGAATTGATTCTCT 59.065 36.000 5.42 3.25 37.67 3.10
856 873 6.170675 ACAAAGTAGCGTGAATTGATTCTC 57.829 37.500 5.42 1.32 37.67 2.87
857 874 7.766278 AGATACAAAGTAGCGTGAATTGATTCT 59.234 33.333 5.42 0.00 37.67 2.40
858 875 7.910304 AGATACAAAGTAGCGTGAATTGATTC 58.090 34.615 0.00 0.00 37.31 2.52
859 876 7.849804 AGATACAAAGTAGCGTGAATTGATT 57.150 32.000 0.00 0.00 0.00 2.57
860 877 7.849804 AAGATACAAAGTAGCGTGAATTGAT 57.150 32.000 0.00 0.00 0.00 2.57
861 878 7.148474 GGAAAGATACAAAGTAGCGTGAATTGA 60.148 37.037 0.00 0.00 0.00 2.57
862 879 6.961554 GGAAAGATACAAAGTAGCGTGAATTG 59.038 38.462 0.00 0.00 0.00 2.32
863 880 6.879458 AGGAAAGATACAAAGTAGCGTGAATT 59.121 34.615 0.00 0.00 0.00 2.17
864 881 6.407202 AGGAAAGATACAAAGTAGCGTGAAT 58.593 36.000 0.00 0.00 0.00 2.57
865 882 5.790593 AGGAAAGATACAAAGTAGCGTGAA 58.209 37.500 0.00 0.00 0.00 3.18
866 883 5.401531 AGGAAAGATACAAAGTAGCGTGA 57.598 39.130 0.00 0.00 0.00 4.35
867 884 6.481954 AAAGGAAAGATACAAAGTAGCGTG 57.518 37.500 0.00 0.00 0.00 5.34
868 885 8.788325 ATAAAAGGAAAGATACAAAGTAGCGT 57.212 30.769 0.00 0.00 0.00 5.07
869 886 9.490663 CAATAAAAGGAAAGATACAAAGTAGCG 57.509 33.333 0.00 0.00 0.00 4.26
912 929 2.446435 GGTGCCTTTTAGATGGAAGCA 58.554 47.619 0.00 0.00 30.06 3.91
974 997 6.089820 CGTTGTTTAACTGGCTTCGATTACTA 59.910 38.462 0.00 0.00 34.60 1.82
1135 1158 2.773487 CTCGGAGGAGAGTACGATCAT 58.227 52.381 0.00 0.00 43.27 2.45
1139 1162 1.153208 GGCTCGGAGGAGAGTACGA 60.153 63.158 7.20 0.00 43.27 3.43
1219 1242 2.202743 CCCGATCGTGTGCGTGAT 60.203 61.111 15.09 0.00 39.49 3.06
1324 1347 3.845259 GCGTCCGGCCATGAGGTA 61.845 66.667 2.24 0.00 37.19 3.08
1344 1367 0.906282 TGCTCACAGCCTCAGATGGA 60.906 55.000 0.00 0.00 41.51 3.41
1414 1437 2.683933 GAAGCCCCACCTCTCGGA 60.684 66.667 0.00 0.00 0.00 4.55
1446 1469 4.443266 GCCGAGTTCTCCTGCGCT 62.443 66.667 9.73 0.00 0.00 5.92
1510 1533 5.363939 GTTTGATGATCTAGAGGACTTGGG 58.636 45.833 0.00 0.00 0.00 4.12
1728 1751 2.307309 CGTGGACGTGATGTTGCGT 61.307 57.895 0.00 0.00 44.50 5.24
1822 1845 2.186384 GCTGAGAGCGCTGTCCAT 59.814 61.111 29.36 3.74 0.00 3.41
1908 1931 0.320334 ACATCACCACGTCGCATTCA 60.320 50.000 0.00 0.00 0.00 2.57
2073 2100 2.476619 CGCGCACTAGGAATCATTTAGG 59.523 50.000 8.75 0.00 0.00 2.69
2074 2101 3.060272 CACGCGCACTAGGAATCATTTAG 60.060 47.826 5.73 0.00 0.00 1.85
2075 2102 2.863740 CACGCGCACTAGGAATCATTTA 59.136 45.455 5.73 0.00 0.00 1.40
2076 2103 1.665679 CACGCGCACTAGGAATCATTT 59.334 47.619 5.73 0.00 0.00 2.32
2077 2104 1.290203 CACGCGCACTAGGAATCATT 58.710 50.000 5.73 0.00 0.00 2.57
2078 2105 1.154205 GCACGCGCACTAGGAATCAT 61.154 55.000 5.73 0.00 38.36 2.45
2079 2106 1.809619 GCACGCGCACTAGGAATCA 60.810 57.895 5.73 0.00 38.36 2.57
2080 2107 1.809619 TGCACGCGCACTAGGAATC 60.810 57.895 5.73 0.00 45.36 2.52
2081 2108 2.264480 TGCACGCGCACTAGGAAT 59.736 55.556 5.73 0.00 45.36 3.01
2090 2117 2.395690 GTGACATAGTGCACGCGC 59.604 61.111 12.01 0.00 39.24 6.86
2094 2121 1.588404 CGATTCCGTGACATAGTGCAC 59.412 52.381 9.40 9.40 0.00 4.57
2095 2122 1.474879 TCGATTCCGTGACATAGTGCA 59.525 47.619 0.00 0.00 37.05 4.57
2096 2123 2.120232 CTCGATTCCGTGACATAGTGC 58.880 52.381 0.00 0.00 37.05 4.40
2097 2124 2.120232 GCTCGATTCCGTGACATAGTG 58.880 52.381 0.00 0.00 37.05 2.74
2098 2125 1.268589 CGCTCGATTCCGTGACATAGT 60.269 52.381 0.00 0.00 37.05 2.12
2099 2126 1.399572 CGCTCGATTCCGTGACATAG 58.600 55.000 0.00 0.00 37.05 2.23
2100 2127 0.594028 GCGCTCGATTCCGTGACATA 60.594 55.000 0.00 0.00 37.05 2.29
2101 2128 1.878522 GCGCTCGATTCCGTGACAT 60.879 57.895 0.00 0.00 37.05 3.06
2102 2129 2.506217 GCGCTCGATTCCGTGACA 60.506 61.111 0.00 0.00 37.05 3.58
2103 2130 2.202623 AGCGCTCGATTCCGTGAC 60.203 61.111 2.64 0.00 37.05 3.67
2104 2131 2.102357 GAGCGCTCGATTCCGTGA 59.898 61.111 23.61 0.00 37.05 4.35
2105 2132 2.202610 TGAGCGCTCGATTCCGTG 60.203 61.111 30.75 0.00 37.05 4.94
2106 2133 2.202623 GTGAGCGCTCGATTCCGT 60.203 61.111 30.75 0.00 37.05 4.69
2107 2134 3.315521 CGTGAGCGCTCGATTCCG 61.316 66.667 30.75 21.96 33.14 4.30
2119 2146 5.351465 TCCTTGCTTTATCTTTTAGCGTGAG 59.649 40.000 0.00 0.00 37.73 3.51
2120 2147 5.121768 GTCCTTGCTTTATCTTTTAGCGTGA 59.878 40.000 0.00 0.00 37.73 4.35
2121 2148 5.106712 TGTCCTTGCTTTATCTTTTAGCGTG 60.107 40.000 0.00 0.00 37.73 5.34
2122 2149 5.001232 TGTCCTTGCTTTATCTTTTAGCGT 58.999 37.500 0.00 0.00 37.73 5.07
2123 2150 5.324697 GTGTCCTTGCTTTATCTTTTAGCG 58.675 41.667 0.00 0.00 37.73 4.26
2124 2151 5.641709 GGTGTCCTTGCTTTATCTTTTAGC 58.358 41.667 0.00 0.00 35.50 3.09
2125 2152 5.163754 CCGGTGTCCTTGCTTTATCTTTTAG 60.164 44.000 0.00 0.00 0.00 1.85
2126 2153 4.698304 CCGGTGTCCTTGCTTTATCTTTTA 59.302 41.667 0.00 0.00 0.00 1.52
2127 2154 3.506067 CCGGTGTCCTTGCTTTATCTTTT 59.494 43.478 0.00 0.00 0.00 2.27
2128 2155 3.081804 CCGGTGTCCTTGCTTTATCTTT 58.918 45.455 0.00 0.00 0.00 2.52
2129 2156 2.711542 CCGGTGTCCTTGCTTTATCTT 58.288 47.619 0.00 0.00 0.00 2.40
2130 2157 1.679032 GCCGGTGTCCTTGCTTTATCT 60.679 52.381 1.90 0.00 0.00 1.98
2131 2158 0.733150 GCCGGTGTCCTTGCTTTATC 59.267 55.000 1.90 0.00 0.00 1.75
2132 2159 0.679960 GGCCGGTGTCCTTGCTTTAT 60.680 55.000 1.90 0.00 0.00 1.40
2133 2160 1.302993 GGCCGGTGTCCTTGCTTTA 60.303 57.895 1.90 0.00 0.00 1.85
2134 2161 2.597510 GGCCGGTGTCCTTGCTTT 60.598 61.111 1.90 0.00 0.00 3.51
2148 2175 0.834687 TATACTCATCCCCACCGGCC 60.835 60.000 0.00 0.00 0.00 6.13
2149 2176 0.320697 GTATACTCATCCCCACCGGC 59.679 60.000 0.00 0.00 0.00 6.13
2150 2177 0.601558 CGTATACTCATCCCCACCGG 59.398 60.000 0.00 0.00 0.00 5.28
2151 2178 1.000607 CACGTATACTCATCCCCACCG 60.001 57.143 0.56 0.00 0.00 4.94
2152 2179 2.037144 ACACGTATACTCATCCCCACC 58.963 52.381 0.56 0.00 0.00 4.61
2153 2180 2.223971 CCACACGTATACTCATCCCCAC 60.224 54.545 0.56 0.00 0.00 4.61
2154 2181 2.036387 CCACACGTATACTCATCCCCA 58.964 52.381 0.56 0.00 0.00 4.96
2155 2182 1.343465 CCCACACGTATACTCATCCCC 59.657 57.143 0.56 0.00 0.00 4.81
2156 2183 2.296471 CTCCCACACGTATACTCATCCC 59.704 54.545 0.56 0.00 0.00 3.85
2157 2184 2.288273 GCTCCCACACGTATACTCATCC 60.288 54.545 0.56 0.00 0.00 3.51
2158 2185 2.623889 AGCTCCCACACGTATACTCATC 59.376 50.000 0.56 0.00 0.00 2.92
2159 2186 2.667470 AGCTCCCACACGTATACTCAT 58.333 47.619 0.56 0.00 0.00 2.90
2160 2187 2.139323 AGCTCCCACACGTATACTCA 57.861 50.000 0.56 0.00 0.00 3.41
2161 2188 4.519730 AGAATAGCTCCCACACGTATACTC 59.480 45.833 0.56 0.00 0.00 2.59
2162 2189 4.471548 AGAATAGCTCCCACACGTATACT 58.528 43.478 0.56 0.00 0.00 2.12
2163 2190 4.519730 AGAGAATAGCTCCCACACGTATAC 59.480 45.833 0.00 0.00 45.10 1.47
2164 2191 4.726583 AGAGAATAGCTCCCACACGTATA 58.273 43.478 0.00 0.00 45.10 1.47
2165 2192 3.567397 AGAGAATAGCTCCCACACGTAT 58.433 45.455 0.00 0.00 45.10 3.06
2166 2193 2.950309 GAGAGAATAGCTCCCACACGTA 59.050 50.000 0.00 0.00 45.10 3.57
2167 2194 1.751924 GAGAGAATAGCTCCCACACGT 59.248 52.381 0.00 0.00 45.10 4.49
2168 2195 1.067821 GGAGAGAATAGCTCCCACACG 59.932 57.143 0.00 0.00 44.96 4.49
2169 2196 2.900716 GGAGAGAATAGCTCCCACAC 57.099 55.000 0.00 0.00 44.96 3.82
2174 2201 2.032620 TGGAACGGAGAGAATAGCTCC 58.967 52.381 0.00 0.00 45.10 4.70
2175 2202 5.455056 TTATGGAACGGAGAGAATAGCTC 57.545 43.478 0.00 0.00 44.29 4.09
2176 2203 5.305644 ACATTATGGAACGGAGAGAATAGCT 59.694 40.000 0.00 0.00 0.00 3.32
2177 2204 5.542779 ACATTATGGAACGGAGAGAATAGC 58.457 41.667 0.00 0.00 0.00 2.97
2178 2205 8.577296 TCTTACATTATGGAACGGAGAGAATAG 58.423 37.037 0.00 0.00 0.00 1.73
2179 2206 8.358148 GTCTTACATTATGGAACGGAGAGAATA 58.642 37.037 0.00 0.00 0.00 1.75
2180 2207 7.147724 TGTCTTACATTATGGAACGGAGAGAAT 60.148 37.037 0.00 0.00 0.00 2.40
2181 2208 6.153851 TGTCTTACATTATGGAACGGAGAGAA 59.846 38.462 0.00 0.00 0.00 2.87
2182 2209 5.655090 TGTCTTACATTATGGAACGGAGAGA 59.345 40.000 0.00 0.00 0.00 3.10
2183 2210 5.902681 TGTCTTACATTATGGAACGGAGAG 58.097 41.667 0.00 0.00 0.00 3.20
2184 2211 5.925506 TGTCTTACATTATGGAACGGAGA 57.074 39.130 0.00 0.00 0.00 3.71
2238 2265 4.262079 CCCCTCCGTCTCATAATGTAAGAC 60.262 50.000 0.00 0.00 36.82 3.01
2239 2266 3.895656 CCCCTCCGTCTCATAATGTAAGA 59.104 47.826 0.00 0.00 0.00 2.10
2240 2267 3.006967 CCCCCTCCGTCTCATAATGTAAG 59.993 52.174 0.00 0.00 0.00 2.34
2241 2268 2.969950 CCCCCTCCGTCTCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2242 2269 2.090943 ACCCCCTCCGTCTCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2243 2270 1.344087 ACCCCCTCCGTCTCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2244 2271 1.424638 ACCCCCTCCGTCTCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2245 2272 3.339713 TTACCCCCTCCGTCTCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
2246 2273 2.852714 TTACCCCCTCCGTCTCATAA 57.147 50.000 0.00 0.00 0.00 1.90
2247 2274 2.852714 TTTACCCCCTCCGTCTCATA 57.147 50.000 0.00 0.00 0.00 2.15
2248 2275 1.961133 TTTTACCCCCTCCGTCTCAT 58.039 50.000 0.00 0.00 0.00 2.90
2249 2276 1.626825 CTTTTTACCCCCTCCGTCTCA 59.373 52.381 0.00 0.00 0.00 3.27
2250 2277 1.904537 TCTTTTTACCCCCTCCGTCTC 59.095 52.381 0.00 0.00 0.00 3.36
2251 2278 1.627329 GTCTTTTTACCCCCTCCGTCT 59.373 52.381 0.00 0.00 0.00 4.18
2252 2279 1.348696 TGTCTTTTTACCCCCTCCGTC 59.651 52.381 0.00 0.00 0.00 4.79
2253 2280 1.437397 TGTCTTTTTACCCCCTCCGT 58.563 50.000 0.00 0.00 0.00 4.69
2254 2281 2.572209 TTGTCTTTTTACCCCCTCCG 57.428 50.000 0.00 0.00 0.00 4.63
2255 2282 4.108501 TCTTTGTCTTTTTACCCCCTCC 57.891 45.455 0.00 0.00 0.00 4.30
2256 2283 6.665992 AATTCTTTGTCTTTTTACCCCCTC 57.334 37.500 0.00 0.00 0.00 4.30
2257 2284 7.532199 TCTAATTCTTTGTCTTTTTACCCCCT 58.468 34.615 0.00 0.00 0.00 4.79
2258 2285 7.450634 ACTCTAATTCTTTGTCTTTTTACCCCC 59.549 37.037 0.00 0.00 0.00 5.40
2259 2286 8.405418 ACTCTAATTCTTTGTCTTTTTACCCC 57.595 34.615 0.00 0.00 0.00 4.95
2260 2287 9.678941 CAACTCTAATTCTTTGTCTTTTTACCC 57.321 33.333 0.00 0.00 0.00 3.69
2261 2288 9.181805 GCAACTCTAATTCTTTGTCTTTTTACC 57.818 33.333 0.00 0.00 0.00 2.85
2262 2289 9.730420 TGCAACTCTAATTCTTTGTCTTTTTAC 57.270 29.630 0.00 0.00 0.00 2.01
2294 2321 4.104261 TCCTTCCTCATATACGGACTCAGA 59.896 45.833 0.00 0.00 0.00 3.27
2298 2325 3.890147 GTGTCCTTCCTCATATACGGACT 59.110 47.826 0.00 0.00 41.06 3.85
2313 2343 2.031163 GCTGTGCTCCGTGTCCTT 59.969 61.111 0.00 0.00 0.00 3.36
2414 2446 2.483714 GCTCATCGCCAGAATTCCAGTA 60.484 50.000 0.65 0.00 0.00 2.74
2416 2448 0.942962 GCTCATCGCCAGAATTCCAG 59.057 55.000 0.65 0.00 0.00 3.86
2426 2458 3.772060 AATTTTGAAGAGCTCATCGCC 57.228 42.857 17.77 0.28 40.39 5.54
2594 2630 6.596309 TGTCATGGCTAATCCTCATAGTAG 57.404 41.667 0.00 0.00 35.26 2.57
2596 2632 5.894298 TTGTCATGGCTAATCCTCATAGT 57.106 39.130 0.00 0.00 35.26 2.12
2629 2665 3.701205 TGACCTAGTTGCACATCACAT 57.299 42.857 0.00 0.00 0.00 3.21
2661 2723 0.176680 GTGAGAGGGTGCACATCGAT 59.823 55.000 20.43 0.00 35.19 3.59
2747 2829 5.488341 CACATTAACTACTAGGCAGTTGGT 58.512 41.667 17.66 11.90 36.88 3.67
2837 2923 6.097129 GCCTTAGTCAACTATCTAACAGACCT 59.903 42.308 0.00 0.00 0.00 3.85
2848 2934 4.323562 GGGTCTGTTGCCTTAGTCAACTAT 60.324 45.833 7.64 0.00 43.00 2.12
2849 2935 3.007614 GGGTCTGTTGCCTTAGTCAACTA 59.992 47.826 7.64 0.00 43.00 2.24
2859 2945 4.907457 CAACTGGGTCTGTTGCCT 57.093 55.556 5.09 0.00 36.74 4.75
2871 2957 0.441533 GCGAGTGAGATGTGCAACTG 59.558 55.000 0.00 0.00 38.04 3.16
2910 2996 8.561536 TTTTCTCTACCCTCATGGATATGTAA 57.438 34.615 0.00 0.00 38.00 2.41
2912 2998 6.617371 ACTTTTCTCTACCCTCATGGATATGT 59.383 38.462 0.00 0.00 38.00 2.29
2947 3033 2.644798 AGATGTGCAACTTTAGGAGGGT 59.355 45.455 0.00 0.00 38.04 4.34
2986 3072 1.879575 TAGTGCTAGCAACCCATCCT 58.120 50.000 21.29 12.83 0.00 3.24
3003 3089 7.386848 CGTACCCCATGGATATGTAGTTTTTAG 59.613 40.741 15.22 0.00 34.81 1.85
3005 3091 6.059484 CGTACCCCATGGATATGTAGTTTTT 58.941 40.000 15.22 0.00 34.81 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.