Multiple sequence alignment - TraesCS6A01G292800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G292800 chr6A 100.000 3190 0 0 1 3190 524362538 524365727 0.000000e+00 5891.0
1 TraesCS6A01G292800 chr6A 94.888 313 16 0 1781 2093 44858416 44858104 1.030000e-134 490.0
2 TraesCS6A01G292800 chr6D 92.000 1825 75 38 1 1783 382561828 382563623 0.000000e+00 2495.0
3 TraesCS6A01G292800 chr6D 86.923 650 76 5 2413 3061 382563981 382564622 0.000000e+00 721.0
4 TraesCS6A01G292800 chr6D 86.989 538 60 6 2525 3061 382577304 382577832 5.890000e-167 597.0
5 TraesCS6A01G292800 chr6D 88.767 365 32 6 2088 2447 382563621 382563981 3.780000e-119 438.0
6 TraesCS6A01G292800 chr6B 87.588 1837 113 57 1 1783 572111492 572113267 0.000000e+00 2023.0
7 TraesCS6A01G292800 chr6B 89.070 430 35 6 2088 2510 572113265 572113689 1.010000e-144 523.0
8 TraesCS6A01G292800 chr6B 85.207 507 61 8 2529 3031 572116915 572117411 2.840000e-140 508.0
9 TraesCS6A01G292800 chr6B 85.778 225 27 3 2289 2510 572114118 572114340 1.910000e-57 233.0
10 TraesCS6A01G292800 chr3B 95.873 315 12 1 1778 2091 335167177 335167491 2.840000e-140 508.0
11 TraesCS6A01G292800 chr4A 95.820 311 13 0 1779 2089 27552374 27552684 1.320000e-138 503.0
12 TraesCS6A01G292800 chr4A 83.117 77 11 2 2825 2901 484357851 484357777 5.710000e-08 69.4
13 TraesCS6A01G292800 chr7A 94.393 321 17 1 1770 2090 248333527 248333208 2.860000e-135 492.0
14 TraesCS6A01G292800 chr7A 93.519 324 20 1 1770 2093 209519949 209519627 6.190000e-132 481.0
15 TraesCS6A01G292800 chr4D 95.161 310 15 0 1781 2090 486181403 486181712 1.030000e-134 490.0
16 TraesCS6A01G292800 chr2D 94.586 314 17 0 1777 2090 585641506 585641819 1.330000e-133 486.0
17 TraesCS6A01G292800 chr1A 94.855 311 16 0 1780 2090 79696176 79696486 1.330000e-133 486.0
18 TraesCS6A01G292800 chr3D 93.769 321 18 2 1773 2091 32905316 32904996 6.190000e-132 481.0
19 TraesCS6A01G292800 chr3D 86.765 68 9 0 3100 3167 590226070 590226137 3.410000e-10 76.8
20 TraesCS6A01G292800 chr4B 84.921 126 18 1 3066 3190 49462131 49462006 3.340000e-25 126.0
21 TraesCS6A01G292800 chr4B 90.196 51 3 2 2268 2316 448537853 448537803 7.390000e-07 65.8
22 TraesCS6A01G292800 chr7D 92.500 80 6 0 1622 1701 167557175 167557096 7.230000e-22 115.0
23 TraesCS6A01G292800 chr7B 92.500 80 6 0 1622 1701 132109907 132109828 7.230000e-22 115.0
24 TraesCS6A01G292800 chr2B 81.343 134 16 2 3064 3188 602779354 602779221 2.020000e-17 100.0
25 TraesCS6A01G292800 chr2A 92.453 53 2 2 2264 2316 775598819 775598869 1.230000e-09 75.0
26 TraesCS6A01G292800 chr1B 93.333 45 2 1 2269 2313 53371122 53371079 7.390000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G292800 chr6A 524362538 524365727 3189 False 5891.00 5891 100.00000 1 3190 1 chr6A.!!$F1 3189
1 TraesCS6A01G292800 chr6D 382561828 382564622 2794 False 1218.00 2495 89.23000 1 3061 3 chr6D.!!$F2 3060
2 TraesCS6A01G292800 chr6D 382577304 382577832 528 False 597.00 597 86.98900 2525 3061 1 chr6D.!!$F1 536
3 TraesCS6A01G292800 chr6B 572111492 572117411 5919 False 821.75 2023 86.91075 1 3031 4 chr6B.!!$F1 3030

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 527 0.250209 AGTGTCAGTGGAGCTGCAAG 60.25 55.0 10.44 6.0 44.66 4.01 F
541 572 0.579630 GTGTGTTTGTGATGACGCGA 59.42 50.0 15.93 0.0 0.00 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2093 0.106066 TGGCATGACCATTGGATCCC 60.106 55.0 10.37 3.03 46.36 3.85 R
2373 2467 0.955919 GGGCCTGCACACTTGAGTAC 60.956 60.0 0.84 0.00 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
434 465 3.268986 CGCAGGTCTCGAGTGTCT 58.731 61.111 13.13 5.77 0.00 3.41
437 468 1.959848 CAGGTCTCGAGTGTCTGCA 59.040 57.895 13.13 0.00 0.00 4.41
438 469 0.315251 CAGGTCTCGAGTGTCTGCAA 59.685 55.000 13.13 0.00 0.00 4.08
439 470 0.315568 AGGTCTCGAGTGTCTGCAAC 59.684 55.000 13.13 0.00 0.00 4.17
440 471 0.315568 GGTCTCGAGTGTCTGCAACT 59.684 55.000 13.13 0.00 0.00 3.16
441 472 1.413382 GTCTCGAGTGTCTGCAACTG 58.587 55.000 13.13 0.00 0.00 3.16
442 473 0.319040 TCTCGAGTGTCTGCAACTGC 60.319 55.000 13.13 0.00 42.50 4.40
473 504 2.656560 GTGACTCTGGTCGCTATGTT 57.343 50.000 2.93 0.00 46.12 2.71
478 509 4.575236 TGACTCTGGTCGCTATGTTACTAG 59.425 45.833 0.00 0.00 44.83 2.57
480 511 4.335874 ACTCTGGTCGCTATGTTACTAGTG 59.664 45.833 5.39 0.00 0.00 2.74
481 512 4.267536 TCTGGTCGCTATGTTACTAGTGT 58.732 43.478 5.39 0.00 32.31 3.55
482 513 4.334759 TCTGGTCGCTATGTTACTAGTGTC 59.665 45.833 5.39 0.00 32.31 3.67
483 514 4.011698 TGGTCGCTATGTTACTAGTGTCA 58.988 43.478 5.39 4.98 32.31 3.58
485 516 4.096081 GGTCGCTATGTTACTAGTGTCAGT 59.904 45.833 5.39 0.00 32.31 3.41
486 517 5.029014 GTCGCTATGTTACTAGTGTCAGTG 58.971 45.833 5.39 2.75 32.31 3.66
488 519 4.095932 CGCTATGTTACTAGTGTCAGTGGA 59.904 45.833 5.39 0.00 0.00 4.02
490 521 3.936372 TGTTACTAGTGTCAGTGGAGC 57.064 47.619 5.39 0.00 0.00 4.70
492 523 3.255888 TGTTACTAGTGTCAGTGGAGCTG 59.744 47.826 5.39 0.00 46.34 4.24
493 524 0.605589 ACTAGTGTCAGTGGAGCTGC 59.394 55.000 0.00 0.00 44.66 5.25
495 526 1.001293 CTAGTGTCAGTGGAGCTGCAA 59.999 52.381 10.44 0.00 44.66 4.08
496 527 0.250209 AGTGTCAGTGGAGCTGCAAG 60.250 55.000 10.44 6.00 44.66 4.01
522 553 5.659463 TGAAATGAATCTTTTATTGCGGGG 58.341 37.500 0.00 0.00 0.00 5.73
523 554 5.186797 TGAAATGAATCTTTTATTGCGGGGT 59.813 36.000 0.00 0.00 0.00 4.95
524 555 4.654091 ATGAATCTTTTATTGCGGGGTG 57.346 40.909 0.00 0.00 0.00 4.61
525 556 3.426615 TGAATCTTTTATTGCGGGGTGT 58.573 40.909 0.00 0.00 0.00 4.16
541 572 0.579630 GTGTGTTTGTGATGACGCGA 59.420 50.000 15.93 0.00 0.00 5.87
546 577 3.060138 GTGTTTGTGATGACGCGAACTAA 60.060 43.478 15.93 3.43 45.69 2.24
550 581 2.156891 TGTGATGACGCGAACTAAAAGC 59.843 45.455 15.93 0.00 0.00 3.51
780 815 2.441410 CTGTGAGCTGAGACCTCTGTA 58.559 52.381 0.00 0.00 0.00 2.74
903 938 5.318349 CGCAAAAGCATCAAATCAAATTCC 58.682 37.500 0.00 0.00 0.00 3.01
954 994 3.127352 GACGCGCAGGACTAGGAGG 62.127 68.421 5.73 0.00 0.00 4.30
963 1003 1.668101 GGACTAGGAGGGTGTCAGCG 61.668 65.000 0.00 0.00 32.84 5.18
1093 1142 1.005394 TTTCTTCTCCCACGGCGTC 60.005 57.895 10.85 0.00 0.00 5.19
1106 1155 2.182030 GCGTCACTTCTCCCCTCG 59.818 66.667 0.00 0.00 0.00 4.63
1142 1191 1.678101 GGACGGTACCTATACTGCGTT 59.322 52.381 10.90 0.00 40.86 4.84
1144 1193 2.355756 GACGGTACCTATACTGCGTTCA 59.644 50.000 10.90 0.00 40.86 3.18
1145 1194 2.954318 ACGGTACCTATACTGCGTTCAT 59.046 45.455 10.90 0.00 40.86 2.57
1147 1196 3.252701 CGGTACCTATACTGCGTTCATCT 59.747 47.826 10.90 0.00 30.91 2.90
1149 1198 4.982916 GGTACCTATACTGCGTTCATCTTG 59.017 45.833 4.06 0.00 0.00 3.02
1150 1199 4.737855 ACCTATACTGCGTTCATCTTGT 57.262 40.909 0.00 0.00 0.00 3.16
1151 1200 4.683832 ACCTATACTGCGTTCATCTTGTC 58.316 43.478 0.00 0.00 0.00 3.18
1152 1201 4.159693 ACCTATACTGCGTTCATCTTGTCA 59.840 41.667 0.00 0.00 0.00 3.58
1153 1202 4.504461 CCTATACTGCGTTCATCTTGTCAC 59.496 45.833 0.00 0.00 0.00 3.67
1155 1204 1.070758 ACTGCGTTCATCTTGTCACCT 59.929 47.619 0.00 0.00 0.00 4.00
1194 1257 7.009448 CGCCTTAACAATTAGTACGATGTGTTA 59.991 37.037 9.67 9.67 31.95 2.41
1204 1268 1.999735 ACGATGTGTTAACCAGATGCG 59.000 47.619 2.48 2.54 0.00 4.73
1321 1385 2.362397 CTCAGAACAGGAGGCGCTAATA 59.638 50.000 7.64 0.00 0.00 0.98
1328 1392 3.069158 ACAGGAGGCGCTAATACGTATTT 59.931 43.478 24.81 6.87 34.88 1.40
1473 1537 1.299165 CGCCGTATGGTTCTCCTCG 60.299 63.158 2.17 0.00 37.67 4.63
1497 1561 2.125512 GTCGGCGCCATCAACTCT 60.126 61.111 28.98 0.00 0.00 3.24
1600 1686 3.023832 TCATCAGACTTGAGCACCGATA 58.976 45.455 0.00 0.00 36.61 2.92
1621 1707 6.137000 CGATAACACGTTGAATAATTTCTGCG 59.863 38.462 0.00 0.00 36.50 5.18
1723 1809 1.591863 GATCAGTTACGGGCTCGCC 60.592 63.158 5.51 0.00 40.63 5.54
1748 1834 5.202004 AGTTGGTAGTATCTGGTGGTAGAG 58.798 45.833 0.00 0.00 0.00 2.43
1769 1855 5.645497 AGAGCTAATTCGATTGCAAGAAACT 59.355 36.000 4.94 1.54 0.00 2.66
1778 1864 6.964908 TCGATTGCAAGAAACTTGTAATTCA 58.035 32.000 21.44 12.63 35.42 2.57
1780 1866 8.081633 TCGATTGCAAGAAACTTGTAATTCATT 58.918 29.630 21.44 7.01 35.42 2.57
1781 1867 9.340695 CGATTGCAAGAAACTTGTAATTCATTA 57.659 29.630 21.44 1.48 35.42 1.90
1784 1870 9.474920 TTGCAAGAAACTTGTAATTCATTAAGG 57.525 29.630 10.02 0.00 0.00 2.69
1785 1871 8.087750 TGCAAGAAACTTGTAATTCATTAAGGG 58.912 33.333 12.07 0.00 0.00 3.95
1786 1872 8.088365 GCAAGAAACTTGTAATTCATTAAGGGT 58.912 33.333 12.07 0.00 0.00 4.34
1787 1873 9.626045 CAAGAAACTTGTAATTCATTAAGGGTC 57.374 33.333 0.00 0.00 0.00 4.46
1788 1874 9.588096 AAGAAACTTGTAATTCATTAAGGGTCT 57.412 29.630 0.00 0.00 0.00 3.85
1789 1875 9.232473 AGAAACTTGTAATTCATTAAGGGTCTC 57.768 33.333 0.00 0.00 0.00 3.36
1790 1876 9.232473 GAAACTTGTAATTCATTAAGGGTCTCT 57.768 33.333 0.00 0.00 0.00 3.10
1791 1877 9.588096 AAACTTGTAATTCATTAAGGGTCTCTT 57.412 29.630 0.00 0.00 39.40 2.85
1792 1878 9.588096 AACTTGTAATTCATTAAGGGTCTCTTT 57.412 29.630 0.00 0.00 36.93 2.52
1793 1879 9.014297 ACTTGTAATTCATTAAGGGTCTCTTTG 57.986 33.333 0.00 0.00 36.93 2.77
1794 1880 9.231297 CTTGTAATTCATTAAGGGTCTCTTTGA 57.769 33.333 0.00 0.00 36.93 2.69
1795 1881 9.753674 TTGTAATTCATTAAGGGTCTCTTTGAT 57.246 29.630 0.00 0.00 36.93 2.57
1796 1882 9.753674 TGTAATTCATTAAGGGTCTCTTTGATT 57.246 29.630 0.00 0.00 36.93 2.57
1798 1884 8.884124 AATTCATTAAGGGTCTCTTTGATTCA 57.116 30.769 0.00 0.00 36.93 2.57
1799 1885 8.884124 ATTCATTAAGGGTCTCTTTGATTCAA 57.116 30.769 0.00 0.00 36.93 2.69
1800 1886 8.704849 TTCATTAAGGGTCTCTTTGATTCAAA 57.295 30.769 11.19 11.19 36.93 2.69
1817 1903 9.705103 TTGATTCAAAGGATTTTCATAGGATCT 57.295 29.630 0.00 0.00 35.03 2.75
1818 1904 9.705103 TGATTCAAAGGATTTTCATAGGATCTT 57.295 29.630 0.00 0.00 35.03 2.40
1821 1907 9.532494 TTCAAAGGATTTTCATAGGATCTTTGA 57.468 29.630 10.02 10.02 35.03 2.69
1822 1908 9.532494 TCAAAGGATTTTCATAGGATCTTTGAA 57.468 29.630 11.24 0.00 35.03 2.69
1823 1909 9.798994 CAAAGGATTTTCATAGGATCTTTGAAG 57.201 33.333 0.00 0.00 35.03 3.02
1824 1910 8.530804 AAGGATTTTCATAGGATCTTTGAAGG 57.469 34.615 0.00 0.00 34.19 3.46
1825 1911 7.876371 AGGATTTTCATAGGATCTTTGAAGGA 58.124 34.615 0.00 0.00 34.19 3.36
1826 1912 8.509441 AGGATTTTCATAGGATCTTTGAAGGAT 58.491 33.333 0.00 0.00 34.19 3.24
1827 1913 9.140874 GGATTTTCATAGGATCTTTGAAGGATT 57.859 33.333 0.00 0.00 34.19 3.01
1859 1945 4.074466 GGAATTTTTCCTACGTTGGTCG 57.926 45.455 15.74 0.00 46.57 4.79
1860 1946 3.499537 GGAATTTTTCCTACGTTGGTCGT 59.500 43.478 15.74 0.00 46.84 4.34
1871 1957 3.348795 CGTTGGTCGTTTGATTCGTAG 57.651 47.619 0.00 0.00 34.52 3.51
1872 1958 2.091588 CGTTGGTCGTTTGATTCGTAGG 59.908 50.000 0.00 0.00 34.52 3.18
1873 1959 3.319755 GTTGGTCGTTTGATTCGTAGGA 58.680 45.455 0.00 0.00 0.00 2.94
1874 1960 3.880047 TGGTCGTTTGATTCGTAGGAT 57.120 42.857 0.00 0.00 0.00 3.24
1875 1961 4.196626 TGGTCGTTTGATTCGTAGGATT 57.803 40.909 0.00 0.00 0.00 3.01
1876 1962 3.930229 TGGTCGTTTGATTCGTAGGATTG 59.070 43.478 0.00 0.00 0.00 2.67
1877 1963 4.178540 GGTCGTTTGATTCGTAGGATTGA 58.821 43.478 0.00 0.00 0.00 2.57
1878 1964 4.628333 GGTCGTTTGATTCGTAGGATTGAA 59.372 41.667 0.00 0.00 0.00 2.69
1879 1965 5.293569 GGTCGTTTGATTCGTAGGATTGAAT 59.706 40.000 0.00 0.00 37.52 2.57
1880 1966 6.411652 GTCGTTTGATTCGTAGGATTGAATC 58.588 40.000 7.76 7.76 46.77 2.52
1881 1967 5.522460 TCGTTTGATTCGTAGGATTGAATCC 59.478 40.000 16.35 16.35 46.29 3.01
1924 2010 8.862325 AGGATTCATTTGTACTACATTTCACA 57.138 30.769 0.00 0.00 0.00 3.58
1925 2011 8.950210 AGGATTCATTTGTACTACATTTCACAG 58.050 33.333 0.00 0.00 0.00 3.66
1926 2012 8.184192 GGATTCATTTGTACTACATTTCACAGG 58.816 37.037 0.00 0.00 0.00 4.00
1927 2013 8.862325 ATTCATTTGTACTACATTTCACAGGA 57.138 30.769 0.00 0.00 0.00 3.86
1928 2014 8.684386 TTCATTTGTACTACATTTCACAGGAA 57.316 30.769 0.00 0.00 0.00 3.36
1929 2015 8.862325 TCATTTGTACTACATTTCACAGGAAT 57.138 30.769 0.00 0.00 31.93 3.01
1930 2016 9.295825 TCATTTGTACTACATTTCACAGGAATT 57.704 29.630 0.00 0.00 31.93 2.17
1931 2017 9.559958 CATTTGTACTACATTTCACAGGAATTC 57.440 33.333 0.00 0.00 31.93 2.17
1932 2018 8.918202 TTTGTACTACATTTCACAGGAATTCT 57.082 30.769 5.23 0.00 31.93 2.40
1935 2021 9.431887 TGTACTACATTTCACAGGAATTCTAAC 57.568 33.333 5.23 0.00 31.93 2.34
1936 2022 9.431887 GTACTACATTTCACAGGAATTCTAACA 57.568 33.333 5.23 0.00 31.93 2.41
1938 2024 9.167311 ACTACATTTCACAGGAATTCTAACATC 57.833 33.333 5.23 0.00 31.93 3.06
1939 2025 7.396540 ACATTTCACAGGAATTCTAACATCC 57.603 36.000 5.23 0.00 31.93 3.51
1940 2026 6.947733 ACATTTCACAGGAATTCTAACATCCA 59.052 34.615 5.23 0.00 35.62 3.41
1941 2027 6.817765 TTTCACAGGAATTCTAACATCCAC 57.182 37.500 5.23 0.00 35.62 4.02
1942 2028 5.762179 TCACAGGAATTCTAACATCCACT 57.238 39.130 5.23 0.00 35.62 4.00
1943 2029 5.734720 TCACAGGAATTCTAACATCCACTC 58.265 41.667 5.23 0.00 35.62 3.51
1944 2030 4.878397 CACAGGAATTCTAACATCCACTCC 59.122 45.833 5.23 0.00 35.62 3.85
1945 2031 4.536090 ACAGGAATTCTAACATCCACTCCA 59.464 41.667 5.23 0.00 35.62 3.86
1946 2032 5.014123 ACAGGAATTCTAACATCCACTCCAA 59.986 40.000 5.23 0.00 35.62 3.53
1947 2033 5.355350 CAGGAATTCTAACATCCACTCCAAC 59.645 44.000 5.23 0.00 35.62 3.77
1948 2034 4.640647 GGAATTCTAACATCCACTCCAACC 59.359 45.833 5.23 0.00 33.30 3.77
1949 2035 5.501156 GAATTCTAACATCCACTCCAACCT 58.499 41.667 0.00 0.00 0.00 3.50
1950 2036 4.553330 TTCTAACATCCACTCCAACCTC 57.447 45.455 0.00 0.00 0.00 3.85
1951 2037 3.791320 TCTAACATCCACTCCAACCTCT 58.209 45.455 0.00 0.00 0.00 3.69
1952 2038 4.168101 TCTAACATCCACTCCAACCTCTT 58.832 43.478 0.00 0.00 0.00 2.85
1953 2039 2.867109 ACATCCACTCCAACCTCTTG 57.133 50.000 0.00 0.00 0.00 3.02
1954 2040 2.338809 ACATCCACTCCAACCTCTTGA 58.661 47.619 0.00 0.00 0.00 3.02
1955 2041 2.711009 ACATCCACTCCAACCTCTTGAA 59.289 45.455 0.00 0.00 0.00 2.69
1956 2042 3.138283 ACATCCACTCCAACCTCTTGAAA 59.862 43.478 0.00 0.00 0.00 2.69
1957 2043 3.492102 TCCACTCCAACCTCTTGAAAG 57.508 47.619 0.00 0.00 0.00 2.62
1958 2044 3.045634 TCCACTCCAACCTCTTGAAAGA 58.954 45.455 0.00 0.00 0.00 2.52
1959 2045 3.458118 TCCACTCCAACCTCTTGAAAGAA 59.542 43.478 0.00 0.00 34.03 2.52
1960 2046 4.080015 TCCACTCCAACCTCTTGAAAGAAA 60.080 41.667 0.00 0.00 34.03 2.52
1961 2047 4.829492 CCACTCCAACCTCTTGAAAGAAAT 59.171 41.667 0.00 0.00 34.03 2.17
1962 2048 5.048434 CCACTCCAACCTCTTGAAAGAAATC 60.048 44.000 0.00 0.00 34.03 2.17
1963 2049 5.048434 CACTCCAACCTCTTGAAAGAAATCC 60.048 44.000 0.00 0.00 34.03 3.01
1964 2050 5.163045 ACTCCAACCTCTTGAAAGAAATCCT 60.163 40.000 0.00 0.00 34.03 3.24
1965 2051 5.705400 TCCAACCTCTTGAAAGAAATCCTT 58.295 37.500 0.00 0.00 34.03 3.36
1967 2053 6.040842 TCCAACCTCTTGAAAGAAATCCTTTG 59.959 38.462 0.00 0.00 44.63 2.77
1968 2054 6.183360 CCAACCTCTTGAAAGAAATCCTTTGT 60.183 38.462 0.00 0.00 44.63 2.83
1969 2055 7.267857 CAACCTCTTGAAAGAAATCCTTTGTT 58.732 34.615 0.00 0.00 44.63 2.83
1970 2056 7.423844 ACCTCTTGAAAGAAATCCTTTGTTT 57.576 32.000 0.00 0.00 44.63 2.83
1971 2057 7.851228 ACCTCTTGAAAGAAATCCTTTGTTTT 58.149 30.769 0.00 0.00 44.63 2.43
1972 2058 8.321353 ACCTCTTGAAAGAAATCCTTTGTTTTT 58.679 29.630 0.00 0.00 44.63 1.94
1973 2059 8.820933 CCTCTTGAAAGAAATCCTTTGTTTTTC 58.179 33.333 0.00 0.00 44.63 2.29
1974 2060 8.716646 TCTTGAAAGAAATCCTTTGTTTTTCC 57.283 30.769 0.00 0.00 44.63 3.13
1975 2061 7.768582 TCTTGAAAGAAATCCTTTGTTTTTCCC 59.231 33.333 0.00 0.00 44.63 3.97
1976 2062 6.951971 TGAAAGAAATCCTTTGTTTTTCCCA 58.048 32.000 0.00 0.00 44.63 4.37
1977 2063 7.572814 TGAAAGAAATCCTTTGTTTTTCCCAT 58.427 30.769 0.00 0.00 44.63 4.00
1978 2064 7.498570 TGAAAGAAATCCTTTGTTTTTCCCATG 59.501 33.333 0.00 0.00 44.63 3.66
1979 2065 6.745794 AGAAATCCTTTGTTTTTCCCATGA 57.254 33.333 0.00 0.00 31.25 3.07
1980 2066 6.524734 AGAAATCCTTTGTTTTTCCCATGAC 58.475 36.000 0.00 0.00 31.25 3.06
1981 2067 5.885449 AATCCTTTGTTTTTCCCATGACA 57.115 34.783 0.00 0.00 0.00 3.58
1982 2068 4.664150 TCCTTTGTTTTTCCCATGACAC 57.336 40.909 0.00 0.00 0.00 3.67
1983 2069 4.026744 TCCTTTGTTTTTCCCATGACACA 58.973 39.130 0.00 0.00 0.00 3.72
1984 2070 4.467795 TCCTTTGTTTTTCCCATGACACAA 59.532 37.500 0.00 0.00 0.00 3.33
1985 2071 5.130145 TCCTTTGTTTTTCCCATGACACAAT 59.870 36.000 0.00 0.00 0.00 2.71
1986 2072 5.466393 CCTTTGTTTTTCCCATGACACAATC 59.534 40.000 0.00 0.00 0.00 2.67
1987 2073 5.604758 TTGTTTTTCCCATGACACAATCA 57.395 34.783 0.00 0.00 43.13 2.57
1988 2074 5.604758 TGTTTTTCCCATGACACAATCAA 57.395 34.783 0.00 0.00 41.93 2.57
1989 2075 5.982356 TGTTTTTCCCATGACACAATCAAA 58.018 33.333 0.00 0.00 41.93 2.69
1990 2076 5.814705 TGTTTTTCCCATGACACAATCAAAC 59.185 36.000 0.00 0.00 41.93 2.93
1991 2077 5.604758 TTTTCCCATGACACAATCAAACA 57.395 34.783 0.00 0.00 41.93 2.83
1992 2078 5.604758 TTTCCCATGACACAATCAAACAA 57.395 34.783 0.00 0.00 41.93 2.83
1993 2079 5.604758 TTCCCATGACACAATCAAACAAA 57.395 34.783 0.00 0.00 41.93 2.83
1994 2080 4.942852 TCCCATGACACAATCAAACAAAC 58.057 39.130 0.00 0.00 41.93 2.93
1995 2081 4.648762 TCCCATGACACAATCAAACAAACT 59.351 37.500 0.00 0.00 41.93 2.66
1996 2082 4.984161 CCCATGACACAATCAAACAAACTC 59.016 41.667 0.00 0.00 41.93 3.01
1997 2083 5.451659 CCCATGACACAATCAAACAAACTCA 60.452 40.000 0.00 0.00 41.93 3.41
1998 2084 6.041511 CCATGACACAATCAAACAAACTCAA 58.958 36.000 0.00 0.00 41.93 3.02
1999 2085 6.534436 CCATGACACAATCAAACAAACTCAAA 59.466 34.615 0.00 0.00 41.93 2.69
2000 2086 7.225145 CCATGACACAATCAAACAAACTCAAAT 59.775 33.333 0.00 0.00 41.93 2.32
2001 2087 7.754069 TGACACAATCAAACAAACTCAAATC 57.246 32.000 0.00 0.00 33.02 2.17
2002 2088 6.756074 TGACACAATCAAACAAACTCAAATCC 59.244 34.615 0.00 0.00 33.02 3.01
2003 2089 6.877236 ACACAATCAAACAAACTCAAATCCT 58.123 32.000 0.00 0.00 0.00 3.24
2004 2090 8.006298 ACACAATCAAACAAACTCAAATCCTA 57.994 30.769 0.00 0.00 0.00 2.94
2005 2091 8.641541 ACACAATCAAACAAACTCAAATCCTAT 58.358 29.630 0.00 0.00 0.00 2.57
2008 2094 9.793252 CAATCAAACAAACTCAAATCCTATAGG 57.207 33.333 13.07 13.07 0.00 2.57
2009 2095 7.938140 TCAAACAAACTCAAATCCTATAGGG 57.062 36.000 18.97 4.00 35.41 3.53
2021 2107 4.502036 TCCTATAGGGATCCAATGGTCA 57.498 45.455 18.97 0.00 39.58 4.02
2022 2108 5.041695 TCCTATAGGGATCCAATGGTCAT 57.958 43.478 18.97 0.00 39.58 3.06
2023 2109 4.784838 TCCTATAGGGATCCAATGGTCATG 59.215 45.833 18.97 0.00 39.58 3.07
2024 2110 2.957402 TAGGGATCCAATGGTCATGC 57.043 50.000 15.23 0.00 0.00 4.06
2025 2111 0.186873 AGGGATCCAATGGTCATGCC 59.813 55.000 15.23 0.86 37.90 4.40
2035 2121 1.779221 TGGTCATGCCATTCCAATCC 58.221 50.000 4.93 0.00 43.61 3.01
2036 2122 1.288633 TGGTCATGCCATTCCAATCCT 59.711 47.619 4.93 0.00 43.61 3.24
2037 2123 2.513317 TGGTCATGCCATTCCAATCCTA 59.487 45.455 4.93 0.00 43.61 2.94
2038 2124 2.887152 GGTCATGCCATTCCAATCCTAC 59.113 50.000 1.78 0.00 37.17 3.18
2039 2125 2.549754 GTCATGCCATTCCAATCCTACG 59.450 50.000 0.00 0.00 0.00 3.51
2040 2126 2.172505 TCATGCCATTCCAATCCTACGT 59.827 45.455 0.00 0.00 0.00 3.57
2041 2127 2.799126 TGCCATTCCAATCCTACGTT 57.201 45.000 0.00 0.00 0.00 3.99
2042 2128 3.080300 TGCCATTCCAATCCTACGTTT 57.920 42.857 0.00 0.00 0.00 3.60
2043 2129 3.426615 TGCCATTCCAATCCTACGTTTT 58.573 40.909 0.00 0.00 0.00 2.43
2044 2130 3.829601 TGCCATTCCAATCCTACGTTTTT 59.170 39.130 0.00 0.00 0.00 1.94
2045 2131 5.010933 TGCCATTCCAATCCTACGTTTTTA 58.989 37.500 0.00 0.00 0.00 1.52
2046 2132 5.106078 TGCCATTCCAATCCTACGTTTTTAC 60.106 40.000 0.00 0.00 0.00 2.01
2047 2133 5.124936 GCCATTCCAATCCTACGTTTTTACT 59.875 40.000 0.00 0.00 0.00 2.24
2048 2134 6.316890 GCCATTCCAATCCTACGTTTTTACTA 59.683 38.462 0.00 0.00 0.00 1.82
2049 2135 7.012989 GCCATTCCAATCCTACGTTTTTACTAT 59.987 37.037 0.00 0.00 0.00 2.12
2050 2136 8.899771 CCATTCCAATCCTACGTTTTTACTATT 58.100 33.333 0.00 0.00 0.00 1.73
2051 2137 9.931210 CATTCCAATCCTACGTTTTTACTATTC 57.069 33.333 0.00 0.00 0.00 1.75
2052 2138 9.901172 ATTCCAATCCTACGTTTTTACTATTCT 57.099 29.630 0.00 0.00 0.00 2.40
2053 2139 9.729281 TTCCAATCCTACGTTTTTACTATTCTT 57.271 29.630 0.00 0.00 0.00 2.52
2054 2140 9.158233 TCCAATCCTACGTTTTTACTATTCTTG 57.842 33.333 0.00 0.00 0.00 3.02
2055 2141 8.943002 CCAATCCTACGTTTTTACTATTCTTGT 58.057 33.333 0.00 0.00 0.00 3.16
2077 2163 9.806203 CTTGTATTTTTGCAATCCTATGAATCA 57.194 29.630 0.00 0.00 0.00 2.57
2082 2168 8.991243 TTTTTGCAATCCTATGAATCAAAGAG 57.009 30.769 0.00 0.00 0.00 2.85
2083 2169 6.704289 TTGCAATCCTATGAATCAAAGAGG 57.296 37.500 0.00 3.58 0.00 3.69
2084 2170 4.581824 TGCAATCCTATGAATCAAAGAGGC 59.418 41.667 4.80 3.46 0.00 4.70
2085 2171 4.022503 GCAATCCTATGAATCAAAGAGGCC 60.023 45.833 0.00 0.00 0.00 5.19
2086 2172 3.864789 TCCTATGAATCAAAGAGGCCC 57.135 47.619 0.00 0.00 0.00 5.80
2195 2284 5.248477 TGGTACAGAGGCAGAGTAAAAGAAT 59.752 40.000 0.00 0.00 0.00 2.40
2246 2335 6.721571 TGTTTGACGATTATTCAGAGAACC 57.278 37.500 0.00 0.00 0.00 3.62
2335 2426 7.504924 AAGAACATTTAGACAAAATCCGTCA 57.495 32.000 0.00 0.00 35.54 4.35
2348 2439 5.941948 AAATCCGTCAAGTAGGAAAACAG 57.058 39.130 0.00 0.00 40.32 3.16
2373 2467 5.124457 AGCAATTACTCTTGTGGCATTACAG 59.876 40.000 0.00 0.00 0.00 2.74
2389 2483 2.533266 ACAGTACTCAAGTGTGCAGG 57.467 50.000 0.00 0.00 40.38 4.85
2419 2514 2.534990 GCACATAGCCTATCCTCCTCT 58.465 52.381 0.00 0.00 37.23 3.69
2486 3232 6.347160 GCGTAAGACTAACATTCCGTTCTTTT 60.347 38.462 0.00 0.00 38.31 2.27
2526 5828 2.158986 AGCATTGTCGAGGAGGAGAATG 60.159 50.000 7.76 7.76 45.45 2.67
2536 5838 1.668101 GAGGAGAATGTCGACCGGCT 61.668 60.000 14.12 6.99 0.00 5.52
2580 5882 9.771534 ACTAGGAGCTAATTTAAAGTCATGATC 57.228 33.333 0.00 0.00 0.00 2.92
2594 5896 4.657504 AGTCATGATCTGATAGAGCCCAAA 59.342 41.667 0.00 0.00 35.97 3.28
2599 5901 2.832838 TCTGATAGAGCCCAAACCAGA 58.167 47.619 0.00 0.00 0.00 3.86
2607 5909 1.985159 AGCCCAAACCAGATAGTGACA 59.015 47.619 0.00 0.00 0.00 3.58
2681 5986 6.115446 CAGACTCCTGGAATTGCTTACATAA 58.885 40.000 0.00 0.00 36.77 1.90
2682 5987 6.769822 CAGACTCCTGGAATTGCTTACATAAT 59.230 38.462 0.00 0.00 36.77 1.28
2710 6015 0.525761 CCGATGGTTTGGCAATTCGT 59.474 50.000 0.00 0.00 0.00 3.85
2728 6033 1.466866 CGTGACGAAGCAACCTATCGA 60.467 52.381 0.00 0.00 39.73 3.59
2732 6037 1.480219 CGAAGCAACCTATCGACCGC 61.480 60.000 0.00 0.00 38.82 5.68
2733 6038 1.480219 GAAGCAACCTATCGACCGCG 61.480 60.000 0.00 0.00 39.35 6.46
2734 6039 3.627218 GCAACCTATCGACCGCGC 61.627 66.667 0.00 0.00 37.46 6.86
2735 6040 3.320078 CAACCTATCGACCGCGCG 61.320 66.667 25.67 25.67 37.46 6.86
2802 6107 3.015145 GGTGGGGGAGCTTAGGCA 61.015 66.667 0.00 0.00 41.70 4.75
2815 6120 1.344438 CTTAGGCACTCCACACTGTGA 59.656 52.381 15.86 0.00 41.75 3.58
2816 6121 1.419381 TAGGCACTCCACACTGTGAA 58.581 50.000 15.86 0.00 41.75 3.18
2902 6207 4.467082 CCCCATTGACAATGAATTTCCAGA 59.533 41.667 26.36 0.00 41.46 3.86
2924 6229 5.964477 AGATAATGGTGTTCAGGACTCCTTA 59.036 40.000 0.00 0.00 41.48 2.69
2935 6240 2.316372 AGGACTCCTTAGGTGAGGTGAT 59.684 50.000 7.38 0.00 38.04 3.06
2936 6241 2.696187 GGACTCCTTAGGTGAGGTGATC 59.304 54.545 7.38 0.00 38.04 2.92
2937 6242 3.366396 GACTCCTTAGGTGAGGTGATCA 58.634 50.000 7.38 0.00 38.04 2.92
2945 6250 6.042552 CCTTAGGTGAGGTGATCAATATGAGT 59.957 42.308 0.00 0.00 40.43 3.41
2971 6277 2.003937 TTCCCTAAGGGCAACAAACC 57.996 50.000 0.00 0.00 43.94 3.27
2994 6300 3.684305 CGTGGATGTGCTCTATTGACAAA 59.316 43.478 0.00 0.00 0.00 2.83
3037 6343 2.093181 TGGACCCATGAGTTATCCAACG 60.093 50.000 0.00 0.00 39.78 4.10
3049 6355 2.533266 ATCCAACGTAGGCATGCTAG 57.467 50.000 18.92 8.99 0.00 3.42
3061 6367 1.811266 ATGCTAGCCGTGCAGTTCG 60.811 57.895 13.29 0.00 44.04 3.95
3062 6368 2.126071 GCTAGCCGTGCAGTTCGA 60.126 61.111 2.29 0.00 0.00 3.71
3063 6369 1.736645 GCTAGCCGTGCAGTTCGAA 60.737 57.895 2.29 0.00 0.00 3.71
3064 6370 1.687494 GCTAGCCGTGCAGTTCGAAG 61.687 60.000 2.29 0.00 0.00 3.79
3065 6371 1.078759 CTAGCCGTGCAGTTCGAAGG 61.079 60.000 0.00 0.00 0.00 3.46
3066 6372 2.501223 TAGCCGTGCAGTTCGAAGGG 62.501 60.000 0.00 0.00 0.00 3.95
3067 6373 2.742372 CCGTGCAGTTCGAAGGGG 60.742 66.667 0.00 0.00 0.00 4.79
3068 6374 3.423154 CGTGCAGTTCGAAGGGGC 61.423 66.667 0.00 3.17 0.00 5.80
3069 6375 2.032681 GTGCAGTTCGAAGGGGCT 59.967 61.111 14.37 0.00 0.00 5.19
3070 6376 2.032528 TGCAGTTCGAAGGGGCTG 59.967 61.111 14.37 11.69 0.00 4.85
3071 6377 2.032681 GCAGTTCGAAGGGGCTGT 59.967 61.111 13.20 0.00 0.00 4.40
3072 6378 1.600916 GCAGTTCGAAGGGGCTGTT 60.601 57.895 13.20 0.00 0.00 3.16
3073 6379 1.172812 GCAGTTCGAAGGGGCTGTTT 61.173 55.000 13.20 0.00 0.00 2.83
3074 6380 0.593128 CAGTTCGAAGGGGCTGTTTG 59.407 55.000 0.00 0.00 0.00 2.93
3075 6381 0.537371 AGTTCGAAGGGGCTGTTTGG 60.537 55.000 0.00 0.00 0.00 3.28
3076 6382 0.536460 GTTCGAAGGGGCTGTTTGGA 60.536 55.000 0.00 0.00 0.00 3.53
3077 6383 0.404040 TTCGAAGGGGCTGTTTGGAT 59.596 50.000 0.00 0.00 0.00 3.41
3078 6384 0.404040 TCGAAGGGGCTGTTTGGATT 59.596 50.000 0.00 0.00 0.00 3.01
3079 6385 0.527565 CGAAGGGGCTGTTTGGATTG 59.472 55.000 0.00 0.00 0.00 2.67
3080 6386 1.632589 GAAGGGGCTGTTTGGATTGT 58.367 50.000 0.00 0.00 0.00 2.71
3081 6387 1.273327 GAAGGGGCTGTTTGGATTGTG 59.727 52.381 0.00 0.00 0.00 3.33
3082 6388 0.482446 AGGGGCTGTTTGGATTGTGA 59.518 50.000 0.00 0.00 0.00 3.58
3083 6389 1.077663 AGGGGCTGTTTGGATTGTGAT 59.922 47.619 0.00 0.00 0.00 3.06
3084 6390 1.901833 GGGGCTGTTTGGATTGTGATT 59.098 47.619 0.00 0.00 0.00 2.57
3085 6391 3.096092 GGGGCTGTTTGGATTGTGATTA 58.904 45.455 0.00 0.00 0.00 1.75
3086 6392 3.706086 GGGGCTGTTTGGATTGTGATTAT 59.294 43.478 0.00 0.00 0.00 1.28
3087 6393 4.892934 GGGGCTGTTTGGATTGTGATTATA 59.107 41.667 0.00 0.00 0.00 0.98
3088 6394 5.539955 GGGGCTGTTTGGATTGTGATTATAT 59.460 40.000 0.00 0.00 0.00 0.86
3089 6395 6.041979 GGGGCTGTTTGGATTGTGATTATATT 59.958 38.462 0.00 0.00 0.00 1.28
3090 6396 7.418942 GGGGCTGTTTGGATTGTGATTATATTT 60.419 37.037 0.00 0.00 0.00 1.40
3091 6397 7.439056 GGGCTGTTTGGATTGTGATTATATTTG 59.561 37.037 0.00 0.00 0.00 2.32
3092 6398 7.042523 GGCTGTTTGGATTGTGATTATATTTGC 60.043 37.037 0.00 0.00 0.00 3.68
3093 6399 7.042523 GCTGTTTGGATTGTGATTATATTTGCC 60.043 37.037 0.00 0.00 0.00 4.52
3094 6400 7.845037 TGTTTGGATTGTGATTATATTTGCCA 58.155 30.769 0.00 0.00 0.00 4.92
3095 6401 8.484575 TGTTTGGATTGTGATTATATTTGCCAT 58.515 29.630 0.00 0.00 0.00 4.40
3096 6402 8.767085 GTTTGGATTGTGATTATATTTGCCATG 58.233 33.333 0.00 0.00 0.00 3.66
3097 6403 7.600231 TGGATTGTGATTATATTTGCCATGT 57.400 32.000 0.00 0.00 0.00 3.21
3098 6404 8.703378 TGGATTGTGATTATATTTGCCATGTA 57.297 30.769 0.00 0.00 0.00 2.29
3099 6405 9.311676 TGGATTGTGATTATATTTGCCATGTAT 57.688 29.630 0.00 0.00 0.00 2.29
3103 6409 9.964303 TTGTGATTATATTTGCCATGTATTGTC 57.036 29.630 0.00 0.00 0.00 3.18
3104 6410 9.129532 TGTGATTATATTTGCCATGTATTGTCA 57.870 29.630 0.00 0.00 0.00 3.58
3105 6411 9.398170 GTGATTATATTTGCCATGTATTGTCAC 57.602 33.333 0.00 0.00 0.00 3.67
3106 6412 9.129532 TGATTATATTTGCCATGTATTGTCACA 57.870 29.630 0.00 0.00 0.00 3.58
3118 6424 6.094193 TGTATTGTCACATGATTTTTGCCA 57.906 33.333 0.00 0.00 0.00 4.92
3119 6425 6.699366 TGTATTGTCACATGATTTTTGCCAT 58.301 32.000 0.00 0.00 0.00 4.40
3120 6426 7.834803 TGTATTGTCACATGATTTTTGCCATA 58.165 30.769 0.00 0.00 0.00 2.74
3121 6427 7.758980 TGTATTGTCACATGATTTTTGCCATAC 59.241 33.333 0.00 0.00 0.00 2.39
3122 6428 5.981088 TGTCACATGATTTTTGCCATACT 57.019 34.783 0.00 0.00 0.00 2.12
3123 6429 6.343716 TGTCACATGATTTTTGCCATACTT 57.656 33.333 0.00 0.00 0.00 2.24
3124 6430 6.157904 TGTCACATGATTTTTGCCATACTTG 58.842 36.000 0.00 0.00 0.00 3.16
3125 6431 6.158598 GTCACATGATTTTTGCCATACTTGT 58.841 36.000 0.00 0.00 0.00 3.16
3126 6432 6.308766 GTCACATGATTTTTGCCATACTTGTC 59.691 38.462 0.00 0.00 0.00 3.18
3127 6433 6.209192 TCACATGATTTTTGCCATACTTGTCT 59.791 34.615 0.00 0.00 0.00 3.41
3128 6434 6.869913 CACATGATTTTTGCCATACTTGTCTT 59.130 34.615 0.00 0.00 0.00 3.01
3129 6435 8.028354 CACATGATTTTTGCCATACTTGTCTTA 58.972 33.333 0.00 0.00 0.00 2.10
3130 6436 8.246180 ACATGATTTTTGCCATACTTGTCTTAG 58.754 33.333 0.00 0.00 0.00 2.18
3131 6437 7.759489 TGATTTTTGCCATACTTGTCTTAGT 57.241 32.000 0.00 0.00 0.00 2.24
3132 6438 8.177119 TGATTTTTGCCATACTTGTCTTAGTT 57.823 30.769 0.00 0.00 0.00 2.24
3133 6439 8.081633 TGATTTTTGCCATACTTGTCTTAGTTG 58.918 33.333 0.00 0.00 0.00 3.16
3134 6440 7.575414 TTTTTGCCATACTTGTCTTAGTTGA 57.425 32.000 0.00 0.00 0.00 3.18
3135 6441 7.575414 TTTTGCCATACTTGTCTTAGTTGAA 57.425 32.000 0.00 0.00 0.00 2.69
3136 6442 7.759489 TTTGCCATACTTGTCTTAGTTGAAT 57.241 32.000 0.00 0.00 0.00 2.57
3137 6443 7.759489 TTGCCATACTTGTCTTAGTTGAATT 57.241 32.000 0.00 0.00 0.00 2.17
3138 6444 7.144722 TGCCATACTTGTCTTAGTTGAATTG 57.855 36.000 0.00 0.00 0.00 2.32
3139 6445 6.030228 GCCATACTTGTCTTAGTTGAATTGC 58.970 40.000 0.00 0.00 0.00 3.56
3140 6446 6.127897 GCCATACTTGTCTTAGTTGAATTGCT 60.128 38.462 0.00 0.00 0.00 3.91
3141 6447 7.575720 GCCATACTTGTCTTAGTTGAATTGCTT 60.576 37.037 0.00 0.00 0.00 3.91
3142 6448 8.946085 CCATACTTGTCTTAGTTGAATTGCTTA 58.054 33.333 0.00 0.00 0.00 3.09
3153 6459 7.889589 AGTTGAATTGCTTAAATTGTTAGCC 57.110 32.000 0.00 0.00 38.64 3.93
3154 6460 7.441017 AGTTGAATTGCTTAAATTGTTAGCCA 58.559 30.769 0.00 0.00 38.64 4.75
3155 6461 8.096414 AGTTGAATTGCTTAAATTGTTAGCCAT 58.904 29.630 0.00 0.00 38.64 4.40
3156 6462 9.364989 GTTGAATTGCTTAAATTGTTAGCCATA 57.635 29.630 0.00 0.00 38.64 2.74
3174 6480 4.506758 CCATATTTTGGCTTGTCAAAGGG 58.493 43.478 0.71 0.00 39.09 3.95
3175 6481 4.222588 CCATATTTTGGCTTGTCAAAGGGA 59.777 41.667 0.71 0.00 39.09 4.20
3176 6482 5.279910 CCATATTTTGGCTTGTCAAAGGGAA 60.280 40.000 0.71 0.00 39.09 3.97
3177 6483 4.980339 ATTTTGGCTTGTCAAAGGGAAT 57.020 36.364 0.71 0.00 37.82 3.01
3178 6484 4.335400 TTTTGGCTTGTCAAAGGGAATC 57.665 40.909 0.71 0.00 37.82 2.52
3179 6485 2.978156 TGGCTTGTCAAAGGGAATCT 57.022 45.000 0.00 0.00 33.68 2.40
3180 6486 3.243359 TGGCTTGTCAAAGGGAATCTT 57.757 42.857 0.00 0.00 37.28 2.40
3181 6487 4.380843 TGGCTTGTCAAAGGGAATCTTA 57.619 40.909 0.00 0.00 34.78 2.10
3182 6488 4.079253 TGGCTTGTCAAAGGGAATCTTAC 58.921 43.478 0.00 0.00 34.78 2.34
3183 6489 3.444034 GGCTTGTCAAAGGGAATCTTACC 59.556 47.826 0.00 0.00 34.78 2.85
3184 6490 4.079253 GCTTGTCAAAGGGAATCTTACCA 58.921 43.478 0.00 0.00 34.78 3.25
3185 6491 4.082733 GCTTGTCAAAGGGAATCTTACCAC 60.083 45.833 0.00 0.00 34.78 4.16
3186 6492 4.715534 TGTCAAAGGGAATCTTACCACA 57.284 40.909 0.00 0.00 34.78 4.17
3187 6493 4.394729 TGTCAAAGGGAATCTTACCACAC 58.605 43.478 0.00 0.00 34.78 3.82
3188 6494 4.104102 TGTCAAAGGGAATCTTACCACACT 59.896 41.667 0.00 0.00 34.78 3.55
3189 6495 5.070685 GTCAAAGGGAATCTTACCACACTT 58.929 41.667 0.00 0.00 34.78 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
381 412 4.856801 CATTCGTGGCCGGGGAGG 62.857 72.222 2.18 0.00 44.97 4.30
437 468 2.228822 GTCACCGGATCAATTTGCAGTT 59.771 45.455 9.46 0.00 0.00 3.16
438 469 1.812571 GTCACCGGATCAATTTGCAGT 59.187 47.619 9.46 0.00 0.00 4.40
439 470 2.086869 AGTCACCGGATCAATTTGCAG 58.913 47.619 9.46 0.00 0.00 4.41
440 471 2.083774 GAGTCACCGGATCAATTTGCA 58.916 47.619 9.46 0.00 0.00 4.08
441 472 2.096496 CAGAGTCACCGGATCAATTTGC 59.904 50.000 9.46 0.00 0.00 3.68
442 473 2.679837 CCAGAGTCACCGGATCAATTTG 59.320 50.000 9.46 0.00 0.00 2.32
443 474 2.305927 ACCAGAGTCACCGGATCAATTT 59.694 45.455 9.46 0.00 0.00 1.82
452 483 0.248661 CATAGCGACCAGAGTCACCG 60.249 60.000 0.00 0.00 43.73 4.94
483 514 0.251033 TTCATGCTTGCAGCTCCACT 60.251 50.000 0.87 0.00 42.97 4.00
485 516 1.203758 CATTTCATGCTTGCAGCTCCA 59.796 47.619 0.87 0.00 42.97 3.86
486 517 1.475280 TCATTTCATGCTTGCAGCTCC 59.525 47.619 0.87 0.00 42.97 4.70
488 519 3.447586 AGATTCATTTCATGCTTGCAGCT 59.552 39.130 0.87 0.00 42.97 4.24
490 521 6.721571 AAAAGATTCATTTCATGCTTGCAG 57.278 33.333 0.87 0.00 0.00 4.41
492 523 7.638683 GCAATAAAAGATTCATTTCATGCTTGC 59.361 33.333 12.97 8.56 32.84 4.01
493 524 7.844169 CGCAATAAAAGATTCATTTCATGCTTG 59.156 33.333 15.87 0.00 33.14 4.01
495 526 6.477688 CCGCAATAAAAGATTCATTTCATGCT 59.522 34.615 15.87 0.00 33.14 3.79
496 527 6.292488 CCCGCAATAAAAGATTCATTTCATGC 60.292 38.462 11.33 11.33 32.53 4.06
497 528 6.201425 CCCCGCAATAAAAGATTCATTTCATG 59.799 38.462 0.00 0.00 0.00 3.07
498 529 6.127083 ACCCCGCAATAAAAGATTCATTTCAT 60.127 34.615 0.00 0.00 0.00 2.57
499 530 5.186797 ACCCCGCAATAAAAGATTCATTTCA 59.813 36.000 0.00 0.00 0.00 2.69
500 531 5.519927 CACCCCGCAATAAAAGATTCATTTC 59.480 40.000 0.00 0.00 0.00 2.17
502 533 4.466015 ACACCCCGCAATAAAAGATTCATT 59.534 37.500 0.00 0.00 0.00 2.57
503 534 4.023291 ACACCCCGCAATAAAAGATTCAT 58.977 39.130 0.00 0.00 0.00 2.57
504 535 3.192422 CACACCCCGCAATAAAAGATTCA 59.808 43.478 0.00 0.00 0.00 2.57
507 538 2.802719 ACACACCCCGCAATAAAAGAT 58.197 42.857 0.00 0.00 0.00 2.40
508 539 2.279935 ACACACCCCGCAATAAAAGA 57.720 45.000 0.00 0.00 0.00 2.52
509 540 3.056304 CAAACACACCCCGCAATAAAAG 58.944 45.455 0.00 0.00 0.00 2.27
510 541 2.431057 ACAAACACACCCCGCAATAAAA 59.569 40.909 0.00 0.00 0.00 1.52
511 542 2.032620 ACAAACACACCCCGCAATAAA 58.967 42.857 0.00 0.00 0.00 1.40
512 543 1.338337 CACAAACACACCCCGCAATAA 59.662 47.619 0.00 0.00 0.00 1.40
513 544 0.955178 CACAAACACACCCCGCAATA 59.045 50.000 0.00 0.00 0.00 1.90
514 545 0.753479 TCACAAACACACCCCGCAAT 60.753 50.000 0.00 0.00 0.00 3.56
515 546 0.753479 ATCACAAACACACCCCGCAA 60.753 50.000 0.00 0.00 0.00 4.85
516 547 1.152860 ATCACAAACACACCCCGCA 60.153 52.632 0.00 0.00 0.00 5.69
517 548 1.169661 TCATCACAAACACACCCCGC 61.170 55.000 0.00 0.00 0.00 6.13
519 550 0.591170 CGTCATCACAAACACACCCC 59.409 55.000 0.00 0.00 0.00 4.95
520 551 0.040425 GCGTCATCACAAACACACCC 60.040 55.000 0.00 0.00 0.00 4.61
521 552 0.384230 CGCGTCATCACAAACACACC 60.384 55.000 0.00 0.00 0.00 4.16
522 553 0.579630 TCGCGTCATCACAAACACAC 59.420 50.000 5.77 0.00 0.00 3.82
523 554 1.004398 GTTCGCGTCATCACAAACACA 60.004 47.619 5.77 0.00 0.00 3.72
524 555 1.260561 AGTTCGCGTCATCACAAACAC 59.739 47.619 5.77 0.00 0.00 3.32
525 556 1.577468 AGTTCGCGTCATCACAAACA 58.423 45.000 5.77 0.00 0.00 2.83
541 572 2.286772 CCGTTGCACGAAGCTTTTAGTT 60.287 45.455 0.00 0.00 46.05 2.24
546 577 2.331451 GCCGTTGCACGAAGCTTT 59.669 55.556 0.00 0.00 46.05 3.51
780 815 1.145571 TTTGGTTGGCTGTCCTAGGT 58.854 50.000 9.08 0.00 0.00 3.08
903 938 4.760047 CTCCTTGTGTCCCGGGCG 62.760 72.222 18.49 0.00 0.00 6.13
941 980 0.614979 TGACACCCTCCTAGTCCTGC 60.615 60.000 0.00 0.00 0.00 4.85
954 994 2.125512 CTGGCCTACGCTGACACC 60.126 66.667 3.32 0.00 34.44 4.16
1075 1124 1.005394 GACGCCGTGGGAGAAGAAA 60.005 57.895 0.00 0.00 0.00 2.52
1093 1142 2.182030 GCGACGAGGGGAGAAGTG 59.818 66.667 0.00 0.00 0.00 3.16
1123 1172 2.355756 TGAACGCAGTATAGGTACCGTC 59.644 50.000 6.18 0.00 45.00 4.79
1142 1191 4.017126 ACGTATCTGAGGTGACAAGATGA 58.983 43.478 0.00 0.00 36.86 2.92
1144 1193 5.297278 GTCTACGTATCTGAGGTGACAAGAT 59.703 44.000 0.00 1.30 38.88 2.40
1145 1194 4.634883 GTCTACGTATCTGAGGTGACAAGA 59.365 45.833 0.00 0.00 30.74 3.02
1147 1196 3.373130 CGTCTACGTATCTGAGGTGACAA 59.627 47.826 0.00 0.00 34.11 3.18
1149 1198 2.286301 GCGTCTACGTATCTGAGGTGAC 60.286 54.545 4.24 0.00 42.22 3.67
1150 1199 1.938577 GCGTCTACGTATCTGAGGTGA 59.061 52.381 4.24 0.00 42.22 4.02
1151 1200 1.002684 GGCGTCTACGTATCTGAGGTG 60.003 57.143 4.24 0.00 42.22 4.00
1152 1201 1.134159 AGGCGTCTACGTATCTGAGGT 60.134 52.381 4.24 0.00 42.22 3.85
1153 1202 1.595466 AGGCGTCTACGTATCTGAGG 58.405 55.000 4.24 0.00 42.22 3.86
1155 1204 3.940852 TGTTAAGGCGTCTACGTATCTGA 59.059 43.478 4.24 0.00 42.22 3.27
1242 1306 4.357947 TCGCGGCAGAGGTGTCAC 62.358 66.667 6.13 0.00 0.00 3.67
1328 1392 1.315257 GCCGTTCTACGTACTCCCCA 61.315 60.000 0.00 0.00 40.58 4.96
1407 1471 0.666577 CGGTGGACTTGTTCTCGACC 60.667 60.000 0.00 0.00 0.00 4.79
1473 1537 4.891727 ATGGCGCCGACGATGACC 62.892 66.667 23.90 0.00 43.93 4.02
1497 1561 2.970639 GTACGCACCAGAGGCAGA 59.029 61.111 0.00 0.00 0.00 4.26
1600 1686 5.103290 ACGCAGAAATTATTCAACGTGTT 57.897 34.783 0.00 0.00 43.32 3.32
1621 1707 1.404391 CATGATCTTGGGAAGCTGCAC 59.596 52.381 1.02 0.00 0.00 4.57
1723 1809 6.363065 TCTACCACCAGATACTACCAACTAG 58.637 44.000 0.00 0.00 0.00 2.57
1748 1834 5.858581 ACAAGTTTCTTGCAATCGAATTAGC 59.141 36.000 0.00 0.00 0.00 3.09
1769 1855 9.753674 ATCAAAGAGACCCTTAATGAATTACAA 57.246 29.630 0.00 0.00 34.00 2.41
1791 1877 9.705103 AGATCCTATGAAAATCCTTTGAATCAA 57.295 29.630 0.00 0.00 0.00 2.57
1792 1878 9.705103 AAGATCCTATGAAAATCCTTTGAATCA 57.295 29.630 0.00 0.00 0.00 2.57
1795 1881 9.532494 TCAAAGATCCTATGAAAATCCTTTGAA 57.468 29.630 0.00 0.00 35.21 2.69
1796 1882 9.532494 TTCAAAGATCCTATGAAAATCCTTTGA 57.468 29.630 0.00 0.00 35.97 2.69
1797 1883 9.798994 CTTCAAAGATCCTATGAAAATCCTTTG 57.201 33.333 0.00 0.00 33.08 2.77
1798 1884 8.975295 CCTTCAAAGATCCTATGAAAATCCTTT 58.025 33.333 6.81 0.00 33.08 3.11
1799 1885 8.339247 TCCTTCAAAGATCCTATGAAAATCCTT 58.661 33.333 6.81 0.00 33.08 3.36
1800 1886 7.876371 TCCTTCAAAGATCCTATGAAAATCCT 58.124 34.615 6.81 0.00 33.08 3.24
1801 1887 8.703378 ATCCTTCAAAGATCCTATGAAAATCC 57.297 34.615 6.81 0.00 33.08 3.01
1838 1924 4.074466 CGACCAACGTAGGAAAAATTCC 57.926 45.455 0.75 0.75 42.65 3.01
1852 1938 3.319755 TCCTACGAATCAAACGACCAAC 58.680 45.455 0.00 0.00 34.70 3.77
1853 1939 3.663995 TCCTACGAATCAAACGACCAA 57.336 42.857 0.00 0.00 34.70 3.67
1854 1940 3.880047 ATCCTACGAATCAAACGACCA 57.120 42.857 0.00 0.00 34.70 4.02
1855 1941 4.178540 TCAATCCTACGAATCAAACGACC 58.821 43.478 0.00 0.00 34.70 4.79
1856 1942 5.773239 TTCAATCCTACGAATCAAACGAC 57.227 39.130 0.00 0.00 34.70 4.34
1857 1943 5.522460 GGATTCAATCCTACGAATCAAACGA 59.478 40.000 9.43 0.00 46.12 3.85
1858 1944 5.738370 GGATTCAATCCTACGAATCAAACG 58.262 41.667 9.43 0.00 46.12 3.60
1898 1984 9.295825 TGTGAAATGTAGTACAAATGAATCCTT 57.704 29.630 7.16 0.00 0.00 3.36
1899 1985 8.862325 TGTGAAATGTAGTACAAATGAATCCT 57.138 30.769 7.16 0.00 0.00 3.24
1900 1986 8.184192 CCTGTGAAATGTAGTACAAATGAATCC 58.816 37.037 7.16 0.00 0.00 3.01
1901 1987 8.946085 TCCTGTGAAATGTAGTACAAATGAATC 58.054 33.333 7.16 1.09 0.00 2.52
1902 1988 8.862325 TCCTGTGAAATGTAGTACAAATGAAT 57.138 30.769 7.16 0.00 0.00 2.57
1903 1989 8.684386 TTCCTGTGAAATGTAGTACAAATGAA 57.316 30.769 7.16 0.25 0.00 2.57
1904 1990 8.862325 ATTCCTGTGAAATGTAGTACAAATGA 57.138 30.769 7.16 0.00 33.32 2.57
1905 1991 9.559958 GAATTCCTGTGAAATGTAGTACAAATG 57.440 33.333 7.16 0.00 33.32 2.32
1906 1992 9.520515 AGAATTCCTGTGAAATGTAGTACAAAT 57.479 29.630 7.16 0.00 33.32 2.32
1907 1993 8.918202 AGAATTCCTGTGAAATGTAGTACAAA 57.082 30.769 7.16 0.00 33.32 2.83
1909 1995 9.431887 GTTAGAATTCCTGTGAAATGTAGTACA 57.568 33.333 5.24 5.24 33.32 2.90
1910 1996 9.431887 TGTTAGAATTCCTGTGAAATGTAGTAC 57.568 33.333 0.65 0.00 33.32 2.73
1912 1998 9.167311 GATGTTAGAATTCCTGTGAAATGTAGT 57.833 33.333 0.65 0.00 33.32 2.73
1913 1999 8.616076 GGATGTTAGAATTCCTGTGAAATGTAG 58.384 37.037 0.65 0.00 33.32 2.74
1914 2000 8.106462 TGGATGTTAGAATTCCTGTGAAATGTA 58.894 33.333 0.65 0.00 33.32 2.29
1915 2001 6.947733 TGGATGTTAGAATTCCTGTGAAATGT 59.052 34.615 0.65 0.00 33.32 2.71
1916 2002 7.121759 AGTGGATGTTAGAATTCCTGTGAAATG 59.878 37.037 0.65 0.00 33.32 2.32
1917 2003 7.177878 AGTGGATGTTAGAATTCCTGTGAAAT 58.822 34.615 0.65 0.00 33.32 2.17
1918 2004 6.542821 AGTGGATGTTAGAATTCCTGTGAAA 58.457 36.000 0.65 0.00 33.32 2.69
1919 2005 6.126863 AGTGGATGTTAGAATTCCTGTGAA 57.873 37.500 0.65 0.00 34.33 3.18
1920 2006 5.338381 GGAGTGGATGTTAGAATTCCTGTGA 60.338 44.000 0.65 0.00 0.00 3.58
1921 2007 4.878397 GGAGTGGATGTTAGAATTCCTGTG 59.122 45.833 0.65 0.00 0.00 3.66
1922 2008 4.536090 TGGAGTGGATGTTAGAATTCCTGT 59.464 41.667 0.65 0.00 0.00 4.00
1923 2009 5.102953 TGGAGTGGATGTTAGAATTCCTG 57.897 43.478 0.65 0.00 0.00 3.86
1924 2010 5.501156 GTTGGAGTGGATGTTAGAATTCCT 58.499 41.667 0.65 0.00 0.00 3.36
1925 2011 4.640647 GGTTGGAGTGGATGTTAGAATTCC 59.359 45.833 0.65 0.00 0.00 3.01
1926 2012 5.501156 AGGTTGGAGTGGATGTTAGAATTC 58.499 41.667 0.00 0.00 0.00 2.17
1927 2013 5.251700 AGAGGTTGGAGTGGATGTTAGAATT 59.748 40.000 0.00 0.00 0.00 2.17
1928 2014 4.785376 AGAGGTTGGAGTGGATGTTAGAAT 59.215 41.667 0.00 0.00 0.00 2.40
1929 2015 4.168101 AGAGGTTGGAGTGGATGTTAGAA 58.832 43.478 0.00 0.00 0.00 2.10
1930 2016 3.791320 AGAGGTTGGAGTGGATGTTAGA 58.209 45.455 0.00 0.00 0.00 2.10
1931 2017 4.020218 TCAAGAGGTTGGAGTGGATGTTAG 60.020 45.833 0.00 0.00 34.09 2.34
1932 2018 3.907474 TCAAGAGGTTGGAGTGGATGTTA 59.093 43.478 0.00 0.00 34.09 2.41
1933 2019 2.711009 TCAAGAGGTTGGAGTGGATGTT 59.289 45.455 0.00 0.00 34.09 2.71
1934 2020 2.338809 TCAAGAGGTTGGAGTGGATGT 58.661 47.619 0.00 0.00 34.09 3.06
1935 2021 3.423539 TTCAAGAGGTTGGAGTGGATG 57.576 47.619 0.00 0.00 34.09 3.51
1936 2022 3.652869 TCTTTCAAGAGGTTGGAGTGGAT 59.347 43.478 0.00 0.00 34.09 3.41
1937 2023 3.045634 TCTTTCAAGAGGTTGGAGTGGA 58.954 45.455 0.00 0.00 34.09 4.02
1938 2024 3.492102 TCTTTCAAGAGGTTGGAGTGG 57.508 47.619 0.00 0.00 34.09 4.00
1939 2025 5.048434 GGATTTCTTTCAAGAGGTTGGAGTG 60.048 44.000 0.00 0.00 36.22 3.51
1940 2026 5.073428 GGATTTCTTTCAAGAGGTTGGAGT 58.927 41.667 0.00 0.00 36.22 3.85
1941 2027 5.320277 AGGATTTCTTTCAAGAGGTTGGAG 58.680 41.667 0.00 0.00 36.22 3.86
1942 2028 5.324832 AGGATTTCTTTCAAGAGGTTGGA 57.675 39.130 0.00 0.00 36.22 3.53
1943 2029 6.183360 ACAAAGGATTTCTTTCAAGAGGTTGG 60.183 38.462 0.00 0.00 43.32 3.77
1944 2030 6.809869 ACAAAGGATTTCTTTCAAGAGGTTG 58.190 36.000 0.00 0.00 43.32 3.77
1945 2031 7.423844 AACAAAGGATTTCTTTCAAGAGGTT 57.576 32.000 0.00 0.00 43.32 3.50
1946 2032 7.423844 AAACAAAGGATTTCTTTCAAGAGGT 57.576 32.000 0.00 0.00 43.32 3.85
1947 2033 8.722480 AAAAACAAAGGATTTCTTTCAAGAGG 57.278 30.769 0.00 0.00 43.32 3.69
1948 2034 8.820933 GGAAAAACAAAGGATTTCTTTCAAGAG 58.179 33.333 0.00 0.00 43.32 2.85
1949 2035 7.768582 GGGAAAAACAAAGGATTTCTTTCAAGA 59.231 33.333 0.00 0.00 43.32 3.02
1950 2036 7.552330 TGGGAAAAACAAAGGATTTCTTTCAAG 59.448 33.333 0.00 0.00 43.32 3.02
1951 2037 7.398024 TGGGAAAAACAAAGGATTTCTTTCAA 58.602 30.769 0.00 0.00 43.32 2.69
1952 2038 6.951971 TGGGAAAAACAAAGGATTTCTTTCA 58.048 32.000 0.00 0.00 43.32 2.69
1953 2039 7.714813 TCATGGGAAAAACAAAGGATTTCTTTC 59.285 33.333 0.00 0.00 43.32 2.62
1954 2040 7.498900 GTCATGGGAAAAACAAAGGATTTCTTT 59.501 33.333 0.00 0.00 45.85 2.52
1955 2041 6.992123 GTCATGGGAAAAACAAAGGATTTCTT 59.008 34.615 0.00 0.00 35.03 2.52
1956 2042 6.099557 TGTCATGGGAAAAACAAAGGATTTCT 59.900 34.615 0.00 0.00 35.03 2.52
1957 2043 6.202762 GTGTCATGGGAAAAACAAAGGATTTC 59.797 38.462 0.00 0.00 35.03 2.17
1958 2044 6.054941 GTGTCATGGGAAAAACAAAGGATTT 58.945 36.000 0.00 0.00 40.26 2.17
1959 2045 5.130145 TGTGTCATGGGAAAAACAAAGGATT 59.870 36.000 0.00 0.00 0.00 3.01
1960 2046 4.653341 TGTGTCATGGGAAAAACAAAGGAT 59.347 37.500 0.00 0.00 0.00 3.24
1961 2047 4.026744 TGTGTCATGGGAAAAACAAAGGA 58.973 39.130 0.00 0.00 0.00 3.36
1962 2048 4.399004 TGTGTCATGGGAAAAACAAAGG 57.601 40.909 0.00 0.00 0.00 3.11
1963 2049 6.047870 TGATTGTGTCATGGGAAAAACAAAG 58.952 36.000 0.00 0.00 31.17 2.77
1964 2050 5.982356 TGATTGTGTCATGGGAAAAACAAA 58.018 33.333 0.00 0.00 31.17 2.83
1965 2051 5.604758 TGATTGTGTCATGGGAAAAACAA 57.395 34.783 0.00 0.00 31.63 2.83
1966 2052 5.604758 TTGATTGTGTCATGGGAAAAACA 57.395 34.783 0.00 0.00 36.54 2.83
1967 2053 5.814705 TGTTTGATTGTGTCATGGGAAAAAC 59.185 36.000 0.00 0.00 36.54 2.43
1968 2054 5.982356 TGTTTGATTGTGTCATGGGAAAAA 58.018 33.333 0.00 0.00 36.54 1.94
1969 2055 5.604758 TGTTTGATTGTGTCATGGGAAAA 57.395 34.783 0.00 0.00 36.54 2.29
1970 2056 5.604758 TTGTTTGATTGTGTCATGGGAAA 57.395 34.783 0.00 0.00 36.54 3.13
1971 2057 5.128499 AGTTTGTTTGATTGTGTCATGGGAA 59.872 36.000 0.00 0.00 36.54 3.97
1972 2058 4.648762 AGTTTGTTTGATTGTGTCATGGGA 59.351 37.500 0.00 0.00 36.54 4.37
1973 2059 4.947645 AGTTTGTTTGATTGTGTCATGGG 58.052 39.130 0.00 0.00 36.54 4.00
1974 2060 5.590145 TGAGTTTGTTTGATTGTGTCATGG 58.410 37.500 0.00 0.00 36.54 3.66
1975 2061 7.522901 TTTGAGTTTGTTTGATTGTGTCATG 57.477 32.000 0.00 0.00 36.54 3.07
1976 2062 7.439056 GGATTTGAGTTTGTTTGATTGTGTCAT 59.561 33.333 0.00 0.00 36.54 3.06
1977 2063 6.756074 GGATTTGAGTTTGTTTGATTGTGTCA 59.244 34.615 0.00 0.00 34.25 3.58
1978 2064 6.980397 AGGATTTGAGTTTGTTTGATTGTGTC 59.020 34.615 0.00 0.00 0.00 3.67
1979 2065 6.877236 AGGATTTGAGTTTGTTTGATTGTGT 58.123 32.000 0.00 0.00 0.00 3.72
1982 2068 9.793252 CCTATAGGATTTGAGTTTGTTTGATTG 57.207 33.333 14.11 0.00 37.39 2.67
1983 2069 8.971073 CCCTATAGGATTTGAGTTTGTTTGATT 58.029 33.333 21.07 0.00 38.24 2.57
1984 2070 8.336235 TCCCTATAGGATTTGAGTTTGTTTGAT 58.664 33.333 21.07 0.00 40.93 2.57
1985 2071 7.695055 TCCCTATAGGATTTGAGTTTGTTTGA 58.305 34.615 21.07 0.00 40.93 2.69
1986 2072 7.938140 TCCCTATAGGATTTGAGTTTGTTTG 57.062 36.000 21.07 0.00 40.93 2.93
2001 2087 4.627255 GCATGACCATTGGATCCCTATAGG 60.627 50.000 12.27 12.27 0.00 2.57
2002 2088 4.521146 GCATGACCATTGGATCCCTATAG 58.479 47.826 10.37 0.00 0.00 1.31
2003 2089 3.266772 GGCATGACCATTGGATCCCTATA 59.733 47.826 10.37 0.00 38.86 1.31
2004 2090 2.042162 GGCATGACCATTGGATCCCTAT 59.958 50.000 10.37 0.00 38.86 2.57
2005 2091 1.425066 GGCATGACCATTGGATCCCTA 59.575 52.381 10.37 0.00 38.86 3.53
2006 2092 0.186873 GGCATGACCATTGGATCCCT 59.813 55.000 10.37 0.00 38.86 4.20
2007 2093 0.106066 TGGCATGACCATTGGATCCC 60.106 55.000 10.37 3.03 46.36 3.85
2008 2094 3.518766 TGGCATGACCATTGGATCC 57.481 52.632 10.37 4.20 46.36 3.36
2017 2103 2.077687 AGGATTGGAATGGCATGACC 57.922 50.000 14.48 14.48 39.84 4.02
2018 2104 2.549754 CGTAGGATTGGAATGGCATGAC 59.450 50.000 0.00 0.00 0.00 3.06
2019 2105 2.172505 ACGTAGGATTGGAATGGCATGA 59.827 45.455 0.00 0.00 0.00 3.07
2020 2106 2.575532 ACGTAGGATTGGAATGGCATG 58.424 47.619 0.00 0.00 0.00 4.06
2021 2107 3.297134 AACGTAGGATTGGAATGGCAT 57.703 42.857 0.00 0.00 0.00 4.40
2022 2108 2.799126 AACGTAGGATTGGAATGGCA 57.201 45.000 0.00 0.00 0.00 4.92
2023 2109 4.450082 AAAAACGTAGGATTGGAATGGC 57.550 40.909 0.00 0.00 0.00 4.40
2024 2110 6.753107 AGTAAAAACGTAGGATTGGAATGG 57.247 37.500 0.00 0.00 0.00 3.16
2025 2111 9.931210 GAATAGTAAAAACGTAGGATTGGAATG 57.069 33.333 0.00 0.00 0.00 2.67
2026 2112 9.901172 AGAATAGTAAAAACGTAGGATTGGAAT 57.099 29.630 0.00 0.00 0.00 3.01
2027 2113 9.729281 AAGAATAGTAAAAACGTAGGATTGGAA 57.271 29.630 0.00 0.00 0.00 3.53
2028 2114 9.158233 CAAGAATAGTAAAAACGTAGGATTGGA 57.842 33.333 0.00 0.00 0.00 3.53
2029 2115 8.943002 ACAAGAATAGTAAAAACGTAGGATTGG 58.057 33.333 0.00 0.00 0.00 3.16
2051 2137 9.806203 TGATTCATAGGATTGCAAAAATACAAG 57.194 29.630 1.71 0.00 0.00 3.16
2056 2142 9.595823 CTCTTTGATTCATAGGATTGCAAAAAT 57.404 29.630 1.71 0.00 0.00 1.82
2057 2143 8.036575 CCTCTTTGATTCATAGGATTGCAAAAA 58.963 33.333 1.71 0.00 0.00 1.94
2058 2144 7.549839 CCTCTTTGATTCATAGGATTGCAAAA 58.450 34.615 1.71 0.00 0.00 2.44
2059 2145 6.406177 GCCTCTTTGATTCATAGGATTGCAAA 60.406 38.462 1.71 0.00 0.00 3.68
2060 2146 5.068198 GCCTCTTTGATTCATAGGATTGCAA 59.932 40.000 0.00 0.00 0.00 4.08
2061 2147 4.581824 GCCTCTTTGATTCATAGGATTGCA 59.418 41.667 12.17 0.00 0.00 4.08
2062 2148 4.022503 GGCCTCTTTGATTCATAGGATTGC 60.023 45.833 12.17 6.85 0.00 3.56
2063 2149 4.522022 GGGCCTCTTTGATTCATAGGATTG 59.478 45.833 0.84 0.00 0.00 2.67
2064 2150 4.418190 AGGGCCTCTTTGATTCATAGGATT 59.582 41.667 0.00 0.00 0.00 3.01
2065 2151 3.986134 AGGGCCTCTTTGATTCATAGGAT 59.014 43.478 0.00 0.00 0.00 3.24
2066 2152 3.397527 AGGGCCTCTTTGATTCATAGGA 58.602 45.455 0.00 0.85 0.00 2.94
2067 2153 3.872459 AGGGCCTCTTTGATTCATAGG 57.128 47.619 0.00 5.38 0.00 2.57
2068 2154 5.684704 TGTTAGGGCCTCTTTGATTCATAG 58.315 41.667 10.74 0.00 0.00 2.23
2069 2155 5.708736 TGTTAGGGCCTCTTTGATTCATA 57.291 39.130 10.74 0.00 0.00 2.15
2070 2156 4.591321 TGTTAGGGCCTCTTTGATTCAT 57.409 40.909 10.74 0.00 0.00 2.57
2071 2157 4.018506 TCATGTTAGGGCCTCTTTGATTCA 60.019 41.667 10.74 0.00 0.00 2.57
2072 2158 4.526970 TCATGTTAGGGCCTCTTTGATTC 58.473 43.478 10.74 0.00 0.00 2.52
2073 2159 4.591321 TCATGTTAGGGCCTCTTTGATT 57.409 40.909 10.74 0.00 0.00 2.57
2074 2160 4.414846 AGATCATGTTAGGGCCTCTTTGAT 59.585 41.667 10.74 14.69 0.00 2.57
2075 2161 3.782523 AGATCATGTTAGGGCCTCTTTGA 59.217 43.478 10.74 10.13 0.00 2.69
2076 2162 4.162040 AGATCATGTTAGGGCCTCTTTG 57.838 45.455 10.74 4.18 0.00 2.77
2077 2163 4.530875 CAAGATCATGTTAGGGCCTCTTT 58.469 43.478 10.74 0.00 0.00 2.52
2078 2164 3.117738 CCAAGATCATGTTAGGGCCTCTT 60.118 47.826 10.74 1.17 0.00 2.85
2079 2165 2.441001 CCAAGATCATGTTAGGGCCTCT 59.559 50.000 10.74 0.00 0.00 3.69
2080 2166 2.439507 TCCAAGATCATGTTAGGGCCTC 59.560 50.000 10.74 0.00 0.00 4.70
2081 2167 2.173569 GTCCAAGATCATGTTAGGGCCT 59.826 50.000 12.58 12.58 0.00 5.19
2082 2168 2.092429 TGTCCAAGATCATGTTAGGGCC 60.092 50.000 0.00 0.00 0.00 5.80
2083 2169 3.281727 TGTCCAAGATCATGTTAGGGC 57.718 47.619 0.00 0.00 0.00 5.19
2084 2170 6.780457 ATTTTGTCCAAGATCATGTTAGGG 57.220 37.500 0.00 0.00 0.00 3.53
2085 2171 8.511604 AGTATTTTGTCCAAGATCATGTTAGG 57.488 34.615 0.00 0.00 0.00 2.69
2227 2316 5.677319 AAGGGTTCTCTGAATAATCGTCA 57.323 39.130 0.00 0.00 0.00 4.35
2246 2335 3.690460 ACAAGCAAACCCTCTGATAAGG 58.310 45.455 0.00 0.00 36.08 2.69
2309 2400 8.073768 TGACGGATTTTGTCTAAATGTTCTTTC 58.926 33.333 0.00 0.00 36.59 2.62
2317 2408 7.391620 TCCTACTTGACGGATTTTGTCTAAAT 58.608 34.615 0.00 0.00 39.15 1.40
2335 2426 7.454225 AGAGTAATTGCTCTGTTTTCCTACTT 58.546 34.615 23.30 0.00 43.54 2.24
2348 2439 4.708726 AATGCCACAAGAGTAATTGCTC 57.291 40.909 15.05 15.05 33.28 4.26
2373 2467 0.955919 GGGCCTGCACACTTGAGTAC 60.956 60.000 0.84 0.00 0.00 2.73
2400 2494 4.590647 TCAAAGAGGAGGATAGGCTATGTG 59.409 45.833 12.68 0.00 0.00 3.21
2401 2495 4.820775 TCAAAGAGGAGGATAGGCTATGT 58.179 43.478 12.68 0.00 0.00 2.29
2402 2496 5.721000 AGATCAAAGAGGAGGATAGGCTATG 59.279 44.000 12.68 0.00 0.00 2.23
2403 2497 5.914452 AGATCAAAGAGGAGGATAGGCTAT 58.086 41.667 6.76 6.76 0.00 2.97
2404 2498 5.346782 AGATCAAAGAGGAGGATAGGCTA 57.653 43.478 0.00 0.00 0.00 3.93
2419 2514 6.642540 CGATGGTGATTATCTCGAAGATCAAA 59.357 38.462 0.00 0.00 36.20 2.69
2486 3232 4.776349 TGCTTGTTAGGTGAGAAGTTTGA 58.224 39.130 0.00 0.00 0.00 2.69
2526 5828 1.310933 TGAAGGACTAGCCGGTCGAC 61.311 60.000 7.13 7.13 43.43 4.20
2536 5838 1.075050 AGTGACCTCGGTGAAGGACTA 59.925 52.381 0.00 0.00 38.87 2.59
2569 5871 4.657504 TGGGCTCTATCAGATCATGACTTT 59.342 41.667 0.00 0.00 41.91 2.66
2573 5875 4.202398 GGTTTGGGCTCTATCAGATCATGA 60.202 45.833 0.00 0.00 43.70 3.07
2580 5882 3.853355 ATCTGGTTTGGGCTCTATCAG 57.147 47.619 0.00 0.00 0.00 2.90
2585 5887 2.237392 GTCACTATCTGGTTTGGGCTCT 59.763 50.000 0.00 0.00 0.00 4.09
2594 5896 2.032620 GGTCGGATGTCACTATCTGGT 58.967 52.381 0.00 0.00 34.80 4.00
2599 5901 6.174720 ACATATTTGGTCGGATGTCACTAT 57.825 37.500 0.00 0.00 0.00 2.12
2607 5909 3.536956 ACGTGACATATTTGGTCGGAT 57.463 42.857 0.00 0.00 38.10 4.18
2624 5926 6.590292 CCTCATTTGTCACTACAGATAAACGT 59.410 38.462 0.00 0.00 36.83 3.99
2681 5986 0.541764 AAACCATCGGTTGTGCCCAT 60.542 50.000 0.00 0.00 46.20 4.00
2682 5987 1.152652 AAACCATCGGTTGTGCCCA 60.153 52.632 0.00 0.00 46.20 5.36
2710 6015 1.135199 GGTCGATAGGTTGCTTCGTCA 60.135 52.381 0.00 0.00 34.60 4.35
2732 6037 0.109086 CAGGATAGAGTATGGGCGCG 60.109 60.000 0.00 0.00 0.00 6.86
2733 6038 0.247736 CCAGGATAGAGTATGGGCGC 59.752 60.000 0.00 0.00 0.00 6.53
2734 6039 1.924731 TCCAGGATAGAGTATGGGCG 58.075 55.000 0.00 0.00 33.45 6.13
2735 6040 3.445008 TCATCCAGGATAGAGTATGGGC 58.555 50.000 0.00 0.00 33.45 5.36
2736 6041 6.183360 GCTTATCATCCAGGATAGAGTATGGG 60.183 46.154 0.00 0.00 31.77 4.00
2740 6045 5.903923 TGGCTTATCATCCAGGATAGAGTA 58.096 41.667 0.00 0.00 31.77 2.59
2796 6101 1.419381 TCACAGTGTGGAGTGCCTAA 58.581 50.000 22.79 0.00 35.76 2.69
2797 6102 1.419381 TTCACAGTGTGGAGTGCCTA 58.581 50.000 22.79 0.00 35.76 3.93
2802 6107 2.799126 TGGTTTTCACAGTGTGGAGT 57.201 45.000 22.79 0.00 33.87 3.85
2902 6207 5.131142 CCTAAGGAGTCCTGAACACCATTAT 59.869 44.000 13.89 0.00 40.80 1.28
2912 6217 1.717077 ACCTCACCTAAGGAGTCCTGA 59.283 52.381 13.89 3.68 38.87 3.86
2918 6223 6.268617 TCATATTGATCACCTCACCTAAGGAG 59.731 42.308 0.00 0.00 38.87 3.69
2924 6229 6.841229 TCTTACTCATATTGATCACCTCACCT 59.159 38.462 0.00 0.00 32.17 4.00
2945 6250 5.263872 TGTTGCCCTTAGGGAAAATCTTA 57.736 39.130 23.58 0.00 43.07 2.10
2971 6277 2.205074 GTCAATAGAGCACATCCACGG 58.795 52.381 0.00 0.00 0.00 4.94
3049 6355 3.423154 CCCTTCGAACTGCACGGC 61.423 66.667 0.00 0.00 0.00 5.68
3061 6367 1.273327 CACAATCCAAACAGCCCCTTC 59.727 52.381 0.00 0.00 0.00 3.46
3062 6368 1.133199 TCACAATCCAAACAGCCCCTT 60.133 47.619 0.00 0.00 0.00 3.95
3063 6369 0.482446 TCACAATCCAAACAGCCCCT 59.518 50.000 0.00 0.00 0.00 4.79
3064 6370 1.560505 ATCACAATCCAAACAGCCCC 58.439 50.000 0.00 0.00 0.00 5.80
3065 6371 6.655078 ATATAATCACAATCCAAACAGCCC 57.345 37.500 0.00 0.00 0.00 5.19
3066 6372 7.042523 GCAAATATAATCACAATCCAAACAGCC 60.043 37.037 0.00 0.00 0.00 4.85
3067 6373 7.042523 GGCAAATATAATCACAATCCAAACAGC 60.043 37.037 0.00 0.00 0.00 4.40
3068 6374 7.980662 TGGCAAATATAATCACAATCCAAACAG 59.019 33.333 0.00 0.00 0.00 3.16
3069 6375 7.845037 TGGCAAATATAATCACAATCCAAACA 58.155 30.769 0.00 0.00 0.00 2.83
3070 6376 8.767085 CATGGCAAATATAATCACAATCCAAAC 58.233 33.333 0.00 0.00 0.00 2.93
3071 6377 8.484575 ACATGGCAAATATAATCACAATCCAAA 58.515 29.630 0.00 0.00 0.00 3.28
3072 6378 8.020777 ACATGGCAAATATAATCACAATCCAA 57.979 30.769 0.00 0.00 0.00 3.53
3073 6379 7.600231 ACATGGCAAATATAATCACAATCCA 57.400 32.000 0.00 0.00 0.00 3.41
3077 6383 9.964303 GACAATACATGGCAAATATAATCACAA 57.036 29.630 0.00 0.00 36.87 3.33
3078 6384 9.129532 TGACAATACATGGCAAATATAATCACA 57.870 29.630 0.00 0.00 46.71 3.58
3094 6400 6.699366 TGGCAAAAATCATGTGACAATACAT 58.301 32.000 0.00 0.00 41.77 2.29
3095 6401 6.094193 TGGCAAAAATCATGTGACAATACA 57.906 33.333 0.00 0.00 34.63 2.29
3096 6402 7.975616 AGTATGGCAAAAATCATGTGACAATAC 59.024 33.333 0.00 0.00 33.02 1.89
3097 6403 8.065473 AGTATGGCAAAAATCATGTGACAATA 57.935 30.769 0.00 0.00 33.02 1.90
3098 6404 6.938507 AGTATGGCAAAAATCATGTGACAAT 58.061 32.000 0.00 0.00 33.02 2.71
3099 6405 6.343716 AGTATGGCAAAAATCATGTGACAA 57.656 33.333 0.00 0.00 33.02 3.18
3100 6406 5.981088 AGTATGGCAAAAATCATGTGACA 57.019 34.783 0.00 0.00 34.03 3.58
3101 6407 6.158598 ACAAGTATGGCAAAAATCATGTGAC 58.841 36.000 0.00 0.00 0.00 3.67
3102 6408 6.209192 AGACAAGTATGGCAAAAATCATGTGA 59.791 34.615 0.00 0.00 36.86 3.58
3103 6409 6.392354 AGACAAGTATGGCAAAAATCATGTG 58.608 36.000 0.00 0.00 36.86 3.21
3104 6410 6.594788 AGACAAGTATGGCAAAAATCATGT 57.405 33.333 0.00 0.00 36.86 3.21
3105 6411 8.246180 ACTAAGACAAGTATGGCAAAAATCATG 58.754 33.333 0.00 0.00 36.86 3.07
3106 6412 8.353423 ACTAAGACAAGTATGGCAAAAATCAT 57.647 30.769 0.00 0.00 36.86 2.45
3107 6413 7.759489 ACTAAGACAAGTATGGCAAAAATCA 57.241 32.000 0.00 0.00 36.86 2.57
3108 6414 8.296713 TCAACTAAGACAAGTATGGCAAAAATC 58.703 33.333 0.00 0.00 36.86 2.17
3109 6415 8.177119 TCAACTAAGACAAGTATGGCAAAAAT 57.823 30.769 0.00 0.00 36.86 1.82
3110 6416 7.575414 TCAACTAAGACAAGTATGGCAAAAA 57.425 32.000 0.00 0.00 36.86 1.94
3111 6417 7.575414 TTCAACTAAGACAAGTATGGCAAAA 57.425 32.000 0.00 0.00 36.86 2.44
3112 6418 7.759489 ATTCAACTAAGACAAGTATGGCAAA 57.241 32.000 0.00 0.00 36.86 3.68
3113 6419 7.592938 CAATTCAACTAAGACAAGTATGGCAA 58.407 34.615 0.00 0.00 36.86 4.52
3114 6420 6.349280 GCAATTCAACTAAGACAAGTATGGCA 60.349 38.462 0.00 0.00 36.86 4.92
3115 6421 6.030228 GCAATTCAACTAAGACAAGTATGGC 58.970 40.000 0.00 0.00 33.34 4.40
3116 6422 7.383102 AGCAATTCAACTAAGACAAGTATGG 57.617 36.000 0.00 0.00 0.00 2.74
3127 6433 9.418045 GGCTAACAATTTAAGCAATTCAACTAA 57.582 29.630 5.95 0.00 32.24 2.24
3128 6434 8.580720 TGGCTAACAATTTAAGCAATTCAACTA 58.419 29.630 5.95 0.00 32.24 2.24
3129 6435 7.441017 TGGCTAACAATTTAAGCAATTCAACT 58.559 30.769 5.95 0.00 32.24 3.16
3130 6436 7.650834 TGGCTAACAATTTAAGCAATTCAAC 57.349 32.000 5.95 0.00 32.24 3.18
3136 6442 9.160496 CCAAAATATGGCTAACAATTTAAGCAA 57.840 29.630 5.95 0.00 43.80 3.91
3137 6443 8.715191 CCAAAATATGGCTAACAATTTAAGCA 57.285 30.769 5.95 0.00 43.80 3.91
3153 6459 5.404466 TCCCTTTGACAAGCCAAAATATG 57.596 39.130 0.00 0.00 35.83 1.78
3154 6460 6.441604 AGATTCCCTTTGACAAGCCAAAATAT 59.558 34.615 0.00 0.00 35.83 1.28
3155 6461 5.779771 AGATTCCCTTTGACAAGCCAAAATA 59.220 36.000 0.00 0.00 35.83 1.40
3156 6462 4.594491 AGATTCCCTTTGACAAGCCAAAAT 59.406 37.500 0.00 0.00 35.83 1.82
3157 6463 3.966665 AGATTCCCTTTGACAAGCCAAAA 59.033 39.130 0.00 0.00 35.83 2.44
3158 6464 3.575805 AGATTCCCTTTGACAAGCCAAA 58.424 40.909 0.00 0.00 35.09 3.28
3159 6465 3.243359 AGATTCCCTTTGACAAGCCAA 57.757 42.857 0.00 0.00 0.00 4.52
3160 6466 2.978156 AGATTCCCTTTGACAAGCCA 57.022 45.000 0.00 0.00 0.00 4.75
3161 6467 3.444034 GGTAAGATTCCCTTTGACAAGCC 59.556 47.826 0.00 0.00 36.34 4.35
3162 6468 4.079253 TGGTAAGATTCCCTTTGACAAGC 58.921 43.478 0.00 0.00 36.34 4.01
3163 6469 5.048713 GTGTGGTAAGATTCCCTTTGACAAG 60.049 44.000 0.00 0.00 36.34 3.16
3164 6470 4.825085 GTGTGGTAAGATTCCCTTTGACAA 59.175 41.667 0.00 0.00 36.34 3.18
3165 6471 4.104102 AGTGTGGTAAGATTCCCTTTGACA 59.896 41.667 0.00 0.00 36.34 3.58
3166 6472 4.652822 AGTGTGGTAAGATTCCCTTTGAC 58.347 43.478 0.00 0.00 36.34 3.18
3167 6473 4.993705 AGTGTGGTAAGATTCCCTTTGA 57.006 40.909 0.00 0.00 36.34 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.