Multiple sequence alignment - TraesCS6A01G291900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G291900 chr6A 100.000 6923 0 0 1 6923 523950831 523943909 0.000000e+00 12785.0
1 TraesCS6A01G291900 chr6A 88.288 222 19 5 2835 3050 523947280 523947060 6.890000e-65 259.0
2 TraesCS6A01G291900 chr6A 88.288 222 19 5 3552 3772 523947997 523947782 6.890000e-65 259.0
3 TraesCS6A01G291900 chr6A 90.244 164 14 2 3153 3315 411770407 411770245 5.440000e-51 213.0
4 TraesCS6A01G291900 chr6B 94.871 2398 65 10 2848 5200 570980427 570978043 0.000000e+00 3694.0
5 TraesCS6A01G291900 chr6B 88.187 2074 123 61 526 2552 570983136 570981138 0.000000e+00 2361.0
6 TraesCS6A01G291900 chr6B 93.682 1472 65 15 5260 6724 570977966 570976516 0.000000e+00 2178.0
7 TraesCS6A01G291900 chr6B 95.089 224 7 1 2629 2852 570980736 570980517 3.970000e-92 350.0
8 TraesCS6A01G291900 chr6B 86.364 242 23 7 3533 3772 570980458 570980225 8.910000e-64 255.0
9 TraesCS6A01G291900 chr6B 84.314 255 10 14 297 521 570995547 570995293 9.040000e-54 222.0
10 TraesCS6A01G291900 chr6B 91.045 134 9 3 2653 2784 570980221 570980089 1.980000e-40 178.0
11 TraesCS6A01G291900 chr6B 86.275 153 20 1 2 154 570995816 570995665 1.540000e-36 165.0
12 TraesCS6A01G291900 chr6B 91.379 116 3 2 2554 2663 570980881 570980767 1.200000e-32 152.0
13 TraesCS6A01G291900 chr6B 95.238 63 2 1 238 299 570995639 570995577 1.590000e-16 99.0
14 TraesCS6A01G291900 chr6D 97.148 1788 28 4 3424 5198 381997299 381995522 0.000000e+00 2998.0
15 TraesCS6A01G291900 chr6D 93.481 1902 73 12 661 2552 382000359 381998499 0.000000e+00 2778.0
16 TraesCS6A01G291900 chr6D 94.864 1246 54 3 5260 6505 381995444 381994209 0.000000e+00 1938.0
17 TraesCS6A01G291900 chr6D 98.532 545 7 1 2848 3392 381997844 381997301 0.000000e+00 961.0
18 TraesCS6A01G291900 chr6D 89.840 374 24 10 297 669 382000874 382000514 1.050000e-127 468.0
19 TraesCS6A01G291900 chr6D 90.604 298 15 2 2 299 382001191 382000907 3.920000e-102 383.0
20 TraesCS6A01G291900 chr6D 88.843 242 19 6 3533 3772 381997877 381997642 2.440000e-74 291.0
21 TraesCS6A01G291900 chr6D 87.783 221 21 4 2835 3050 381997178 381996959 3.200000e-63 254.0
22 TraesCS6A01G291900 chr6D 97.761 134 3 0 2718 2851 381998072 381997939 1.500000e-56 231.0
23 TraesCS6A01G291900 chr6D 91.935 124 3 2 2546 2663 381998469 381998347 4.300000e-37 167.0
24 TraesCS6A01G291900 chr6D 96.939 98 3 0 2624 2721 381998321 381998224 1.540000e-36 165.0
25 TraesCS6A01G291900 chr6D 89.062 128 8 4 6607 6733 381994177 381994055 3.340000e-33 154.0
26 TraesCS6A01G291900 chr6D 93.000 100 4 3 2653 2750 381997638 381997540 7.240000e-30 143.0
27 TraesCS6A01G291900 chr7D 82.609 483 61 16 1186 1664 169915322 169914859 8.360000e-109 405.0
28 TraesCS6A01G291900 chr7D 85.512 283 33 7 1206 1484 504174825 504175103 8.790000e-74 289.0
29 TraesCS6A01G291900 chr7D 79.273 275 53 4 5662 5933 169911309 169911036 9.170000e-44 189.0
30 TraesCS6A01G291900 chr7B 82.365 482 64 16 1186 1664 135582466 135582003 3.890000e-107 399.0
31 TraesCS6A01G291900 chr7B 85.159 283 34 7 1206 1484 532275765 532276043 4.090000e-72 283.0
32 TraesCS6A01G291900 chr7A 82.365 482 64 16 1186 1664 172469156 172468693 3.890000e-107 399.0
33 TraesCS6A01G291900 chr7A 85.159 283 34 7 1206 1484 571701720 571701998 4.090000e-72 283.0
34 TraesCS6A01G291900 chr7A 79.245 265 53 2 5662 5925 172465310 172465047 4.260000e-42 183.0
35 TraesCS6A01G291900 chr2B 88.627 255 26 1 1201 1455 91257421 91257672 2.430000e-79 307.0
36 TraesCS6A01G291900 chr2B 100.000 36 0 0 6511 6546 500656269 500656304 4.480000e-07 67.6
37 TraesCS6A01G291900 chr2A 92.258 155 11 1 3155 3309 141506318 141506471 1.170000e-52 219.0
38 TraesCS6A01G291900 chr2A 90.909 154 13 1 3155 3308 79316157 79316005 9.100000e-49 206.0
39 TraesCS6A01G291900 chr2A 97.143 35 1 0 6511 6545 733632806 733632840 7.500000e-05 60.2
40 TraesCS6A01G291900 chr3B 89.881 168 16 1 3146 3313 245935622 245935456 1.510000e-51 215.0
41 TraesCS6A01G291900 chr4D 90.062 161 16 0 3148 3308 74079511 74079351 7.040000e-50 209.0
42 TraesCS6A01G291900 chr1D 89.571 163 17 0 3155 3317 193504536 193504374 2.530000e-49 207.0
43 TraesCS6A01G291900 chr1A 88.957 163 17 1 3155 3317 240310282 240310121 4.230000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G291900 chr6A 523943909 523950831 6922 True 4434.333333 12785 92.192000 1 6923 3 chr6A.!!$R2 6922
1 TraesCS6A01G291900 chr6B 570976516 570983136 6620 True 1309.714286 3694 91.516714 526 6724 7 chr6B.!!$R1 6198
2 TraesCS6A01G291900 chr6D 381994055 382001191 7136 True 840.846154 2998 93.060923 2 6733 13 chr6D.!!$R1 6731
3 TraesCS6A01G291900 chr7D 169911036 169915322 4286 True 297.000000 405 80.941000 1186 5933 2 chr7D.!!$R1 4747
4 TraesCS6A01G291900 chr7A 172465047 172469156 4109 True 291.000000 399 80.805000 1186 5925 2 chr7A.!!$R1 4739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 1136 0.525029 GAATCGTCCGTCCGTCTTCC 60.525 60.000 0.00 0.00 0.00 3.46 F
1112 1343 0.461163 GGGCGGCTTTGTTTTTGTGT 60.461 50.000 9.56 0.00 0.00 3.72 F
1113 1344 0.649993 GGCGGCTTTGTTTTTGTGTG 59.350 50.000 0.00 0.00 0.00 3.82 F
1115 1346 1.060409 GCGGCTTTGTTTTTGTGTGTG 59.940 47.619 0.00 0.00 0.00 3.82 F
2582 3382 1.173043 GACGCAAACCATCCATCCAA 58.827 50.000 0.00 0.00 0.00 3.53 F
2721 3670 4.679197 GCACAACATGTTTCGCATTTCTTA 59.321 37.500 19.38 0.00 35.19 2.10 F
4610 5911 1.853319 CGAACGCACAAGGTGAGAC 59.147 57.895 7.10 0.83 36.85 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 2195 0.622665 CCAGCTCAATGGGAAGGAGT 59.377 55.000 0.00 0.00 36.64 3.85 R
2355 2679 0.741221 CTTCCGAGCCTGCAGGTAAC 60.741 60.000 32.81 21.77 37.57 2.50 R
2552 2965 1.265905 GGTTTGCGTCACCCTAACTTG 59.734 52.381 0.00 0.00 0.00 3.16 R
2671 3620 3.007614 CCTCGTACTTTGAAAAGAGGGGA 59.992 47.826 9.71 1.48 40.98 4.81 R
3401 4633 2.895404 TCCCTCCAGTATATAACACCGC 59.105 50.000 0.00 0.00 0.00 5.68 R
4699 6043 2.290641 GGTTAGGACTGCCGCAATTATG 59.709 50.000 0.00 0.00 39.96 1.90 R
5934 7333 0.040958 GCTTCACTTTCACACAGCCG 60.041 55.000 0.00 0.00 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.679944 CGTGCTCATCCCTTCCACAAT 60.680 52.381 0.00 0.00 0.00 2.71
28 29 2.450476 GTGCTCATCCCTTCCACAATT 58.550 47.619 0.00 0.00 0.00 2.32
30 31 3.259123 GTGCTCATCCCTTCCACAATTTT 59.741 43.478 0.00 0.00 0.00 1.82
35 36 6.097412 GCTCATCCCTTCCACAATTTTTCTAT 59.903 38.462 0.00 0.00 0.00 1.98
36 37 7.285401 GCTCATCCCTTCCACAATTTTTCTATA 59.715 37.037 0.00 0.00 0.00 1.31
39 40 6.795590 TCCCTTCCACAATTTTTCTATACCA 58.204 36.000 0.00 0.00 0.00 3.25
49 50 9.628500 ACAATTTTTCTATACCATCCTCTAACC 57.372 33.333 0.00 0.00 0.00 2.85
50 51 9.627123 CAATTTTTCTATACCATCCTCTAACCA 57.373 33.333 0.00 0.00 0.00 3.67
74 75 1.625818 AGTCCAAGAAGAGACGCCATT 59.374 47.619 0.00 0.00 38.08 3.16
92 93 6.015772 ACGCCATTTGTAACCATATATTTCCC 60.016 38.462 0.00 0.00 0.00 3.97
135 136 4.246206 CGATGCCGTGCCATGCAG 62.246 66.667 0.00 0.00 40.08 4.41
210 211 2.699954 GTGATCCTTGAACACCACGAT 58.300 47.619 0.00 0.00 30.75 3.73
232 233 4.451629 ACGACCACCAGAGTGTAATAAG 57.548 45.455 0.00 0.00 42.88 1.73
233 234 3.830755 ACGACCACCAGAGTGTAATAAGT 59.169 43.478 0.00 0.00 42.88 2.24
234 235 4.174009 CGACCACCAGAGTGTAATAAGTG 58.826 47.826 0.00 0.00 42.88 3.16
235 236 4.504858 GACCACCAGAGTGTAATAAGTGG 58.495 47.826 4.79 4.79 46.87 4.00
236 237 4.164981 ACCACCAGAGTGTAATAAGTGGA 58.835 43.478 12.88 0.00 44.85 4.02
277 278 5.249780 TCCACCCTAACAACATGTGTAAT 57.750 39.130 0.00 0.00 40.60 1.89
344 380 0.657840 GCCACGCACAATGGATAGAC 59.342 55.000 0.00 0.00 39.87 2.59
348 384 2.219445 CACGCACAATGGATAGACGATG 59.781 50.000 0.00 0.00 0.00 3.84
472 520 3.551496 CTTCCTGCCACCTTCCGCA 62.551 63.158 0.00 0.00 0.00 5.69
601 651 6.844829 ACTAGTAGTCCCTATCTTCTTCCTC 58.155 44.000 0.00 0.00 0.00 3.71
602 652 6.622348 ACTAGTAGTCCCTATCTTCTTCCTCT 59.378 42.308 0.00 0.00 0.00 3.69
603 653 6.349897 AGTAGTCCCTATCTTCTTCCTCTT 57.650 41.667 0.00 0.00 0.00 2.85
604 654 6.133356 AGTAGTCCCTATCTTCTTCCTCTTG 58.867 44.000 0.00 0.00 0.00 3.02
605 655 3.709141 AGTCCCTATCTTCTTCCTCTTGC 59.291 47.826 0.00 0.00 0.00 4.01
768 983 1.946475 CTTCCGTCTTCCCCCGTCTC 61.946 65.000 0.00 0.00 0.00 3.36
775 990 3.864983 TTCCCCCGTCTCCTTGGCT 62.865 63.158 0.00 0.00 0.00 4.75
917 1136 0.525029 GAATCGTCCGTCCGTCTTCC 60.525 60.000 0.00 0.00 0.00 3.46
926 1145 1.975407 TCCGTCTTCCTCCGGTGAC 60.975 63.158 4.76 4.89 44.51 3.67
979 1198 4.344865 ATTGAGGCGCGGGTGGTT 62.345 61.111 8.83 0.00 0.00 3.67
981 1200 4.572571 TGAGGCGCGGGTGGTTTT 62.573 61.111 8.83 0.00 0.00 2.43
982 1201 3.292159 GAGGCGCGGGTGGTTTTT 61.292 61.111 8.83 0.00 0.00 1.94
984 1203 3.906879 GGCGCGGGTGGTTTTTGT 61.907 61.111 8.83 0.00 0.00 2.83
988 1207 1.362355 GCGGGTGGTTTTTGTGGAG 59.638 57.895 0.00 0.00 0.00 3.86
995 1214 1.082104 GTTTTTGTGGAGGCGAGCG 60.082 57.895 0.00 0.00 0.00 5.03
1106 1337 3.670377 GCTCGGGCGGCTTTGTTT 61.670 61.111 9.56 0.00 0.00 2.83
1107 1338 3.039134 CTCGGGCGGCTTTGTTTT 58.961 55.556 9.56 0.00 0.00 2.43
1108 1339 1.362355 CTCGGGCGGCTTTGTTTTT 59.638 52.632 9.56 0.00 0.00 1.94
1109 1340 0.939106 CTCGGGCGGCTTTGTTTTTG 60.939 55.000 9.56 0.00 0.00 2.44
1110 1341 1.227118 CGGGCGGCTTTGTTTTTGT 60.227 52.632 9.56 0.00 0.00 2.83
1111 1342 1.486644 CGGGCGGCTTTGTTTTTGTG 61.487 55.000 9.56 0.00 0.00 3.33
1112 1343 0.461163 GGGCGGCTTTGTTTTTGTGT 60.461 50.000 9.56 0.00 0.00 3.72
1113 1344 0.649993 GGCGGCTTTGTTTTTGTGTG 59.350 50.000 0.00 0.00 0.00 3.82
1114 1345 1.355005 GCGGCTTTGTTTTTGTGTGT 58.645 45.000 0.00 0.00 0.00 3.72
1115 1346 1.060409 GCGGCTTTGTTTTTGTGTGTG 59.940 47.619 0.00 0.00 0.00 3.82
1116 1347 2.333014 CGGCTTTGTTTTTGTGTGTGT 58.667 42.857 0.00 0.00 0.00 3.72
1117 1348 2.091899 CGGCTTTGTTTTTGTGTGTGTG 59.908 45.455 0.00 0.00 0.00 3.82
1118 1349 3.063485 GGCTTTGTTTTTGTGTGTGTGT 58.937 40.909 0.00 0.00 0.00 3.72
1119 1350 3.120718 GGCTTTGTTTTTGTGTGTGTGTG 60.121 43.478 0.00 0.00 0.00 3.82
1154 1385 4.294232 GGTTTTGCTGCTTCTTCTTCTTC 58.706 43.478 0.00 0.00 0.00 2.87
1155 1386 4.037327 GGTTTTGCTGCTTCTTCTTCTTCT 59.963 41.667 0.00 0.00 0.00 2.85
1156 1387 5.451103 GGTTTTGCTGCTTCTTCTTCTTCTT 60.451 40.000 0.00 0.00 0.00 2.52
1383 1614 1.746220 CTCCCTCCTCAAGTACGTCTG 59.254 57.143 0.00 0.00 0.00 3.51
1679 1928 1.388065 CGGTTTGTTGCTTCACCCCA 61.388 55.000 0.00 0.00 0.00 4.96
1702 1951 1.539065 CCCTCCCATCTCGTTCAATCG 60.539 57.143 0.00 0.00 0.00 3.34
1834 2107 2.224314 CCAGTCCGTTTCTTCTTTCAGC 59.776 50.000 0.00 0.00 0.00 4.26
1835 2108 2.224314 CAGTCCGTTTCTTCTTTCAGCC 59.776 50.000 0.00 0.00 0.00 4.85
1856 2129 6.804295 CAGCCGTTTCTATCTACTATTGCTAG 59.196 42.308 0.00 0.00 0.00 3.42
1883 2195 6.588719 ACCAATGCTTGATTTTACTTGCTA 57.411 33.333 0.00 0.00 0.00 3.49
1884 2196 6.389906 ACCAATGCTTGATTTTACTTGCTAC 58.610 36.000 0.00 0.00 0.00 3.58
1885 2197 6.209391 ACCAATGCTTGATTTTACTTGCTACT 59.791 34.615 0.00 0.00 0.00 2.57
1886 2198 6.749118 CCAATGCTTGATTTTACTTGCTACTC 59.251 38.462 0.00 0.00 0.00 2.59
1887 2199 5.880054 TGCTTGATTTTACTTGCTACTCC 57.120 39.130 0.00 0.00 0.00 3.85
1892 2204 5.497474 TGATTTTACTTGCTACTCCTTCCC 58.503 41.667 0.00 0.00 0.00 3.97
1924 2241 5.163663 TGGTTTATCATTTGAGCATTCGACC 60.164 40.000 0.00 0.00 0.00 4.79
1927 2244 1.739466 TCATTTGAGCATTCGACCAGC 59.261 47.619 0.00 0.00 0.00 4.85
2033 2353 2.222217 GGTGACGTGCGCGATACTC 61.222 63.158 28.73 13.93 42.00 2.59
2183 2503 1.594564 GTATCGAGCCCTTTCGCCC 60.595 63.158 0.00 0.00 40.29 6.13
2229 2549 2.099652 GACCCAAAAAGGTGGCTGGC 62.100 60.000 0.00 0.00 41.42 4.85
2320 2644 3.244215 TGTGACTCTGTTGAGGGATTGTC 60.244 47.826 0.00 0.00 44.29 3.18
2331 2655 3.007940 TGAGGGATTGTCCTACACACAAG 59.992 47.826 0.00 0.00 37.18 3.16
2350 2674 7.641411 CACACAAGAACACAGACTTATTTGAAG 59.359 37.037 0.00 0.00 0.00 3.02
2355 2679 5.679734 ACACAGACTTATTTGAAGTGCTG 57.320 39.130 11.79 11.79 34.56 4.41
2407 2731 3.686726 AGATCTTGGACATTTCTCGCAAC 59.313 43.478 0.00 0.00 0.00 4.17
2473 2797 1.444836 TGCCAAATACGAACTTCCCG 58.555 50.000 0.00 0.00 0.00 5.14
2582 3382 1.173043 GACGCAAACCATCCATCCAA 58.827 50.000 0.00 0.00 0.00 3.53
2721 3670 4.679197 GCACAACATGTTTCGCATTTCTTA 59.321 37.500 19.38 0.00 35.19 2.10
3090 4292 8.754991 TTTACAATCCCTCTTTTCAAAGTACA 57.245 30.769 0.00 0.00 37.31 2.90
3283 4515 8.507249 CCGATTGAGAAAAGAAGTTAGAACATT 58.493 33.333 0.00 0.00 0.00 2.71
3401 4633 4.402793 TCCCGAGGAGAGTTTCAAATCTAG 59.597 45.833 0.00 0.00 32.87 2.43
3515 4748 9.893305 AATAGCGGTATTAGAAATTATTGTTGC 57.107 29.630 17.83 0.00 0.00 4.17
3516 4749 7.328277 AGCGGTATTAGAAATTATTGTTGCA 57.672 32.000 0.00 0.00 0.00 4.08
3517 4750 7.940850 AGCGGTATTAGAAATTATTGTTGCAT 58.059 30.769 0.00 0.00 0.00 3.96
3518 4751 8.076178 AGCGGTATTAGAAATTATTGTTGCATC 58.924 33.333 0.00 0.00 0.00 3.91
3519 4752 7.326063 GCGGTATTAGAAATTATTGTTGCATCC 59.674 37.037 0.00 0.00 0.00 3.51
3520 4753 8.567948 CGGTATTAGAAATTATTGTTGCATCCT 58.432 33.333 0.00 0.00 0.00 3.24
3780 5014 3.641437 TTGTTTTCTGCATAGGTGTGC 57.359 42.857 0.00 0.00 45.25 4.57
4254 5501 3.169512 ACCAGGTATCCTTTTTGGGTG 57.830 47.619 0.00 0.00 36.20 4.61
4610 5911 1.853319 CGAACGCACAAGGTGAGAC 59.147 57.895 7.10 0.83 36.85 3.36
5020 6364 6.209788 TCAAAACAAGGTTTCAGTAAACTGGT 59.790 34.615 10.11 0.00 43.76 4.00
5023 6367 6.688637 ACAAGGTTTCAGTAAACTGGTTAC 57.311 37.500 7.52 7.52 43.76 2.50
5094 6438 5.570973 GCTGATACATACAGAGCTTATGTCG 59.429 44.000 11.85 6.76 40.09 4.35
5171 6515 2.613026 TGGACGCACCTTACCATATG 57.387 50.000 0.00 0.00 39.86 1.78
5199 6543 4.019792 TGTTTCAGCTTGCATCCTTCTA 57.980 40.909 0.00 0.00 0.00 2.10
5201 6545 5.012239 TGTTTCAGCTTGCATCCTTCTATT 58.988 37.500 0.00 0.00 0.00 1.73
5203 6547 5.824904 TTCAGCTTGCATCCTTCTATTTC 57.175 39.130 0.00 0.00 0.00 2.17
5204 6548 4.847198 TCAGCTTGCATCCTTCTATTTCA 58.153 39.130 0.00 0.00 0.00 2.69
5209 6553 5.975939 GCTTGCATCCTTCTATTTCATCAAC 59.024 40.000 0.00 0.00 0.00 3.18
5218 6562 8.298854 TCCTTCTATTTCATCAACATGTTTGTG 58.701 33.333 8.77 10.70 35.83 3.33
5221 6565 7.592938 TCTATTTCATCAACATGTTTGTGGAC 58.407 34.615 8.77 0.00 38.63 4.02
5231 6575 7.450014 TCAACATGTTTGTGGACCAACTTATAT 59.550 33.333 8.77 0.00 35.83 0.86
5232 6576 8.735315 CAACATGTTTGTGGACCAACTTATATA 58.265 33.333 8.77 0.00 35.83 0.86
5234 6578 8.736244 ACATGTTTGTGGACCAACTTATATAAC 58.264 33.333 0.00 0.00 33.85 1.89
5236 6580 8.330466 TGTTTGTGGACCAACTTATATAACAG 57.670 34.615 0.00 0.00 31.20 3.16
5238 6582 8.789762 GTTTGTGGACCAACTTATATAACAGTT 58.210 33.333 0.00 0.00 33.29 3.16
5242 6586 9.836076 GTGGACCAACTTATATAACAGTTTTTC 57.164 33.333 0.00 0.00 30.48 2.29
5243 6587 9.802039 TGGACCAACTTATATAACAGTTTTTCT 57.198 29.630 0.00 0.00 30.48 2.52
5258 6602 5.468746 CAGTTTTTCTGAATTGTACCTCGGA 59.531 40.000 0.00 0.00 46.27 4.55
5276 6645 2.924290 CGGAAGCTTGTAGAGTGCTTAC 59.076 50.000 2.10 0.00 45.56 2.34
5585 6972 4.083862 GTGGGAGGAGGACGGTGC 62.084 72.222 0.00 0.00 0.00 5.01
5586 6973 4.316823 TGGGAGGAGGACGGTGCT 62.317 66.667 0.31 0.31 0.00 4.40
5638 7037 5.552178 ACAAGGAGATAAACCAACAGACTC 58.448 41.667 0.00 0.00 0.00 3.36
5763 7162 0.743097 GCATGTCCTTCATTCTGGGC 59.257 55.000 0.00 0.00 34.09 5.36
5817 7216 0.248498 TCGTGAAGCGGATCGTGATC 60.248 55.000 1.11 1.11 41.72 2.92
5853 7252 2.125350 CTGAGGAGGAACAGCCGC 60.125 66.667 0.00 0.00 43.43 6.53
5928 7327 4.275810 TGGTCTACCAGGTGTGATAGTAC 58.724 47.826 0.76 0.00 42.01 2.73
5929 7328 3.314635 GGTCTACCAGGTGTGATAGTACG 59.685 52.174 0.76 0.00 35.64 3.67
5930 7329 3.944015 GTCTACCAGGTGTGATAGTACGT 59.056 47.826 0.76 0.00 0.00 3.57
5931 7330 5.118990 GTCTACCAGGTGTGATAGTACGTA 58.881 45.833 0.76 0.00 0.00 3.57
5932 7331 5.236047 GTCTACCAGGTGTGATAGTACGTAG 59.764 48.000 0.76 0.00 0.00 3.51
5933 7332 2.686915 ACCAGGTGTGATAGTACGTAGC 59.313 50.000 0.00 0.00 0.00 3.58
5934 7333 2.034305 CCAGGTGTGATAGTACGTAGCC 59.966 54.545 0.00 0.00 0.00 3.93
5935 7334 1.945394 AGGTGTGATAGTACGTAGCCG 59.055 52.381 0.00 0.00 40.83 5.52
5949 7350 0.602638 TAGCCGGCTGTGTGAAAGTG 60.603 55.000 38.98 0.00 0.00 3.16
5953 7354 0.040958 CGGCTGTGTGAAAGTGAAGC 60.041 55.000 0.00 0.00 0.00 3.86
5968 7369 6.639632 AAGTGAAGCTAGAGAGATCAGATC 57.360 41.667 1.64 1.64 0.00 2.75
6101 7502 0.469070 CAGATCCTTGGAGAGCCCTG 59.531 60.000 0.00 0.00 35.38 4.45
6420 7828 3.565482 TCTGTTGGCTGTTGATGTTCTTC 59.435 43.478 0.00 0.00 0.00 2.87
6434 7842 7.645058 TGATGTTCTTCTTCTTGTTCCTTTT 57.355 32.000 0.00 0.00 0.00 2.27
6468 7876 0.036732 GGAAGTCTGCATGGGTCACA 59.963 55.000 0.00 0.00 0.00 3.58
6512 7920 6.819397 AAAGTTATTTTGTACTCCCTCAGC 57.181 37.500 0.00 0.00 0.00 4.26
6513 7921 4.504858 AGTTATTTTGTACTCCCTCAGCG 58.495 43.478 0.00 0.00 0.00 5.18
6514 7922 4.020485 AGTTATTTTGTACTCCCTCAGCGT 60.020 41.667 0.00 0.00 0.00 5.07
6515 7923 2.922740 TTTTGTACTCCCTCAGCGTT 57.077 45.000 0.00 0.00 0.00 4.84
6516 7924 2.922740 TTTGTACTCCCTCAGCGTTT 57.077 45.000 0.00 0.00 0.00 3.60
6518 7926 3.587797 TTGTACTCCCTCAGCGTTTAG 57.412 47.619 0.00 0.00 0.00 1.85
6519 7927 2.799017 TGTACTCCCTCAGCGTTTAGA 58.201 47.619 0.00 0.00 0.00 2.10
6520 7928 3.362706 TGTACTCCCTCAGCGTTTAGAT 58.637 45.455 0.00 0.00 0.00 1.98
6521 7929 3.380637 TGTACTCCCTCAGCGTTTAGATC 59.619 47.826 0.00 0.00 0.00 2.75
6522 7930 2.457598 ACTCCCTCAGCGTTTAGATCA 58.542 47.619 0.00 0.00 0.00 2.92
6523 7931 2.166664 ACTCCCTCAGCGTTTAGATCAC 59.833 50.000 0.00 0.00 0.00 3.06
6524 7932 2.428890 CTCCCTCAGCGTTTAGATCACT 59.571 50.000 0.00 0.00 0.00 3.41
6525 7933 3.628008 TCCCTCAGCGTTTAGATCACTA 58.372 45.455 0.00 0.00 0.00 2.74
6526 7934 4.215908 TCCCTCAGCGTTTAGATCACTAT 58.784 43.478 0.00 0.00 0.00 2.12
6528 7936 4.985409 CCCTCAGCGTTTAGATCACTATTC 59.015 45.833 0.00 0.00 0.00 1.75
6529 7937 5.221342 CCCTCAGCGTTTAGATCACTATTCT 60.221 44.000 0.00 0.00 0.00 2.40
6530 7938 6.276847 CCTCAGCGTTTAGATCACTATTCTT 58.723 40.000 0.00 0.00 0.00 2.52
6531 7939 6.758886 CCTCAGCGTTTAGATCACTATTCTTT 59.241 38.462 0.00 0.00 0.00 2.52
6532 7940 7.921214 CCTCAGCGTTTAGATCACTATTCTTTA 59.079 37.037 0.00 0.00 0.00 1.85
6534 7942 7.431376 TCAGCGTTTAGATCACTATTCTTTACG 59.569 37.037 0.00 0.00 34.59 3.18
6535 7943 6.696148 AGCGTTTAGATCACTATTCTTTACGG 59.304 38.462 0.00 0.00 33.30 4.02
6536 7944 6.694411 GCGTTTAGATCACTATTCTTTACGGA 59.306 38.462 0.00 0.00 33.30 4.69
6537 7945 7.096558 GCGTTTAGATCACTATTCTTTACGGAG 60.097 40.741 0.00 0.00 33.30 4.63
6538 7946 7.378995 CGTTTAGATCACTATTCTTTACGGAGG 59.621 40.741 0.00 0.00 31.12 4.30
6539 7947 5.793030 AGATCACTATTCTTTACGGAGGG 57.207 43.478 0.00 0.00 0.00 4.30
6540 7948 5.455872 AGATCACTATTCTTTACGGAGGGA 58.544 41.667 0.00 0.00 0.00 4.20
6541 7949 5.536916 AGATCACTATTCTTTACGGAGGGAG 59.463 44.000 0.00 0.00 0.00 4.30
6547 7955 7.284034 CACTATTCTTTACGGAGGGAGTACTAA 59.716 40.741 0.00 0.00 0.00 2.24
6555 7963 6.897706 ACGGAGGGAGTACTAATATTCTTC 57.102 41.667 0.00 0.00 0.00 2.87
6573 7981 5.282055 TCTTCGAAGCACCATATCTTGAT 57.718 39.130 20.56 0.00 0.00 2.57
6642 8050 5.473162 TCAATGTCCAAACTACACATTCCTG 59.527 40.000 0.00 0.00 38.43 3.86
6649 8057 6.016360 TCCAAACTACACATTCCTGACAAATG 60.016 38.462 0.00 0.00 39.50 2.32
6651 8059 7.309377 CCAAACTACACATTCCTGACAAATGAT 60.309 37.037 6.82 0.00 37.51 2.45
6698 8107 8.374743 GGGTGCCAAATGGAAATGTAATTATAT 58.625 33.333 2.98 0.00 33.01 0.86
6733 8142 5.442391 ACCTTTTTGGCACTAGTGTAGAAA 58.558 37.500 23.44 17.04 40.22 2.52
6734 8143 5.531287 ACCTTTTTGGCACTAGTGTAGAAAG 59.469 40.000 23.44 23.38 40.22 2.62
6735 8144 5.531287 CCTTTTTGGCACTAGTGTAGAAAGT 59.469 40.000 25.52 0.00 0.00 2.66
6736 8145 6.708949 CCTTTTTGGCACTAGTGTAGAAAGTA 59.291 38.462 25.52 14.83 0.00 2.24
6737 8146 7.095187 CCTTTTTGGCACTAGTGTAGAAAGTAG 60.095 40.741 25.52 19.39 0.00 2.57
6738 8147 6.659745 TTTGGCACTAGTGTAGAAAGTAGA 57.340 37.500 23.44 0.00 0.00 2.59
6739 8148 6.659745 TTGGCACTAGTGTAGAAAGTAGAA 57.340 37.500 23.44 0.67 0.00 2.10
6740 8149 6.852420 TGGCACTAGTGTAGAAAGTAGAAT 57.148 37.500 23.44 0.00 0.00 2.40
6741 8150 6.631016 TGGCACTAGTGTAGAAAGTAGAATG 58.369 40.000 23.44 0.00 0.00 2.67
6742 8151 6.436218 TGGCACTAGTGTAGAAAGTAGAATGA 59.564 38.462 23.44 0.00 0.00 2.57
6743 8152 7.124298 TGGCACTAGTGTAGAAAGTAGAATGAT 59.876 37.037 23.44 0.00 0.00 2.45
6744 8153 7.436673 GGCACTAGTGTAGAAAGTAGAATGATG 59.563 40.741 23.44 0.00 0.00 3.07
6745 8154 7.436673 GCACTAGTGTAGAAAGTAGAATGATGG 59.563 40.741 23.44 0.00 0.00 3.51
6746 8155 8.470805 CACTAGTGTAGAAAGTAGAATGATGGT 58.529 37.037 15.06 0.00 0.00 3.55
6747 8156 9.696572 ACTAGTGTAGAAAGTAGAATGATGGTA 57.303 33.333 0.00 0.00 0.00 3.25
6750 8159 9.201989 AGTGTAGAAAGTAGAATGATGGTATCA 57.798 33.333 0.00 0.00 44.55 2.15
6751 8160 9.469807 GTGTAGAAAGTAGAATGATGGTATCAG 57.530 37.037 0.00 0.00 43.53 2.90
6752 8161 9.421399 TGTAGAAAGTAGAATGATGGTATCAGA 57.579 33.333 0.00 0.00 43.53 3.27
6755 8164 8.428063 AGAAAGTAGAATGATGGTATCAGAAGG 58.572 37.037 0.00 0.00 43.53 3.46
6756 8165 6.107901 AGTAGAATGATGGTATCAGAAGGC 57.892 41.667 0.00 0.00 43.53 4.35
6757 8166 5.843421 AGTAGAATGATGGTATCAGAAGGCT 59.157 40.000 0.00 0.00 43.53 4.58
6758 8167 7.013220 AGTAGAATGATGGTATCAGAAGGCTA 58.987 38.462 0.00 0.00 43.53 3.93
6759 8168 6.949117 AGAATGATGGTATCAGAAGGCTAT 57.051 37.500 0.00 0.00 43.53 2.97
6760 8169 7.327064 AGAATGATGGTATCAGAAGGCTATT 57.673 36.000 0.00 0.00 43.53 1.73
6761 8170 8.441311 AGAATGATGGTATCAGAAGGCTATTA 57.559 34.615 0.00 0.00 43.53 0.98
6762 8171 8.538701 AGAATGATGGTATCAGAAGGCTATTAG 58.461 37.037 0.00 0.00 43.53 1.73
6763 8172 6.611613 TGATGGTATCAGAAGGCTATTAGG 57.388 41.667 0.00 0.00 33.59 2.69
6764 8173 4.891992 TGGTATCAGAAGGCTATTAGGC 57.108 45.455 9.15 9.15 41.73 3.93
6765 8174 4.231273 TGGTATCAGAAGGCTATTAGGCA 58.769 43.478 18.38 0.00 44.19 4.75
6766 8175 4.284490 TGGTATCAGAAGGCTATTAGGCAG 59.716 45.833 18.38 6.40 44.19 4.85
6767 8176 2.918712 TCAGAAGGCTATTAGGCAGC 57.081 50.000 18.38 9.93 44.19 5.25
6775 8184 2.772287 GCTATTAGGCAGCCAAGTAGG 58.228 52.381 15.80 0.00 41.84 3.18
6776 8185 2.368875 GCTATTAGGCAGCCAAGTAGGA 59.631 50.000 15.80 0.00 41.22 2.94
6777 8186 3.008485 GCTATTAGGCAGCCAAGTAGGAT 59.992 47.826 15.80 0.00 41.22 3.24
6778 8187 3.778954 ATTAGGCAGCCAAGTAGGATC 57.221 47.619 15.80 0.00 41.22 3.36
6779 8188 2.478872 TAGGCAGCCAAGTAGGATCT 57.521 50.000 15.80 0.00 41.22 2.75
6780 8189 2.478872 AGGCAGCCAAGTAGGATCTA 57.521 50.000 15.80 0.00 41.22 1.98
6781 8190 2.043227 AGGCAGCCAAGTAGGATCTAC 58.957 52.381 15.80 0.00 41.22 2.59
6782 8191 1.762957 GGCAGCCAAGTAGGATCTACA 59.237 52.381 6.55 0.00 41.22 2.74
6783 8192 2.170607 GGCAGCCAAGTAGGATCTACAA 59.829 50.000 6.55 0.00 41.22 2.41
6784 8193 3.370527 GGCAGCCAAGTAGGATCTACAAA 60.371 47.826 6.55 0.00 41.22 2.83
6785 8194 3.873952 GCAGCCAAGTAGGATCTACAAAG 59.126 47.826 7.68 0.00 41.22 2.77
6786 8195 4.383118 GCAGCCAAGTAGGATCTACAAAGA 60.383 45.833 7.68 0.00 41.22 2.52
6787 8196 5.734720 CAGCCAAGTAGGATCTACAAAGAA 58.265 41.667 7.68 0.00 41.22 2.52
6788 8197 6.173339 CAGCCAAGTAGGATCTACAAAGAAA 58.827 40.000 7.68 0.00 41.22 2.52
6789 8198 6.092807 CAGCCAAGTAGGATCTACAAAGAAAC 59.907 42.308 7.68 0.00 41.22 2.78
6790 8199 6.013293 AGCCAAGTAGGATCTACAAAGAAACT 60.013 38.462 7.68 0.00 41.22 2.66
6791 8200 6.655425 GCCAAGTAGGATCTACAAAGAAACTT 59.345 38.462 7.68 0.00 41.22 2.66
6792 8201 7.822822 GCCAAGTAGGATCTACAAAGAAACTTA 59.177 37.037 7.68 0.00 41.22 2.24
6793 8202 9.892130 CCAAGTAGGATCTACAAAGAAACTTAT 57.108 33.333 7.68 0.00 41.22 1.73
6803 8212 9.209175 TCTACAAAGAAACTTATGAAAGAGAGC 57.791 33.333 0.00 0.00 36.50 4.09
6804 8213 7.208225 ACAAAGAAACTTATGAAAGAGAGCC 57.792 36.000 0.00 0.00 36.50 4.70
6805 8214 7.001073 ACAAAGAAACTTATGAAAGAGAGCCT 58.999 34.615 0.00 0.00 36.50 4.58
6806 8215 7.040823 ACAAAGAAACTTATGAAAGAGAGCCTG 60.041 37.037 0.00 0.00 36.50 4.85
6807 8216 6.365970 AGAAACTTATGAAAGAGAGCCTGA 57.634 37.500 0.00 0.00 36.50 3.86
6808 8217 6.773638 AGAAACTTATGAAAGAGAGCCTGAA 58.226 36.000 0.00 0.00 36.50 3.02
6809 8218 7.401246 AGAAACTTATGAAAGAGAGCCTGAAT 58.599 34.615 0.00 0.00 36.50 2.57
6810 8219 6.998968 AACTTATGAAAGAGAGCCTGAATG 57.001 37.500 0.00 0.00 36.50 2.67
6811 8220 4.880696 ACTTATGAAAGAGAGCCTGAATGC 59.119 41.667 0.00 0.00 36.50 3.56
6812 8221 2.119801 TGAAAGAGAGCCTGAATGCC 57.880 50.000 0.00 0.00 0.00 4.40
6813 8222 1.632409 TGAAAGAGAGCCTGAATGCCT 59.368 47.619 0.00 0.00 0.00 4.75
6814 8223 2.840038 TGAAAGAGAGCCTGAATGCCTA 59.160 45.455 0.00 0.00 0.00 3.93
6815 8224 3.457380 TGAAAGAGAGCCTGAATGCCTAT 59.543 43.478 0.00 0.00 0.00 2.57
6816 8225 4.080129 TGAAAGAGAGCCTGAATGCCTATT 60.080 41.667 0.00 0.00 0.00 1.73
6817 8226 3.488778 AGAGAGCCTGAATGCCTATTG 57.511 47.619 0.00 0.00 0.00 1.90
6818 8227 3.044156 AGAGAGCCTGAATGCCTATTGA 58.956 45.455 0.00 0.00 0.00 2.57
6819 8228 3.651904 AGAGAGCCTGAATGCCTATTGAT 59.348 43.478 0.00 0.00 0.00 2.57
6820 8229 3.752222 GAGAGCCTGAATGCCTATTGATG 59.248 47.826 0.00 0.00 0.00 3.07
6821 8230 2.818432 GAGCCTGAATGCCTATTGATGG 59.182 50.000 0.00 0.00 0.00 3.51
6822 8231 1.891150 GCCTGAATGCCTATTGATGGG 59.109 52.381 0.00 0.00 0.00 4.00
6823 8232 2.489619 GCCTGAATGCCTATTGATGGGA 60.490 50.000 0.00 0.00 0.00 4.37
6824 8233 3.836146 CCTGAATGCCTATTGATGGGAA 58.164 45.455 0.00 0.00 0.00 3.97
6825 8234 4.217510 CCTGAATGCCTATTGATGGGAAA 58.782 43.478 0.00 0.00 0.00 3.13
6826 8235 4.836736 CCTGAATGCCTATTGATGGGAAAT 59.163 41.667 0.00 0.00 0.00 2.17
6827 8236 6.012113 CCTGAATGCCTATTGATGGGAAATA 58.988 40.000 0.00 0.00 0.00 1.40
6828 8237 6.152323 CCTGAATGCCTATTGATGGGAAATAG 59.848 42.308 0.00 0.00 37.36 1.73
6829 8238 6.613699 TGAATGCCTATTGATGGGAAATAGT 58.386 36.000 0.00 0.00 36.35 2.12
6830 8239 6.491062 TGAATGCCTATTGATGGGAAATAGTG 59.509 38.462 0.00 0.00 36.35 2.74
6831 8240 5.387113 TGCCTATTGATGGGAAATAGTGT 57.613 39.130 0.00 0.00 36.35 3.55
6832 8241 5.765510 TGCCTATTGATGGGAAATAGTGTT 58.234 37.500 0.00 0.00 36.35 3.32
6833 8242 5.827797 TGCCTATTGATGGGAAATAGTGTTC 59.172 40.000 0.00 0.00 36.35 3.18
6834 8243 5.827797 GCCTATTGATGGGAAATAGTGTTCA 59.172 40.000 0.00 0.00 36.35 3.18
6835 8244 6.321181 GCCTATTGATGGGAAATAGTGTTCAA 59.679 38.462 0.00 0.00 36.35 2.69
6836 8245 7.014615 GCCTATTGATGGGAAATAGTGTTCAAT 59.985 37.037 0.00 0.00 36.35 2.57
6837 8246 9.573166 CCTATTGATGGGAAATAGTGTTCAATA 57.427 33.333 0.00 0.00 36.35 1.90
6846 8255 9.442047 GGGAAATAGTGTTCAATATATGAGAGG 57.558 37.037 0.00 0.00 39.77 3.69
6869 8278 7.097834 AGGAACTCATAGTAAAAGTAGTGTGC 58.902 38.462 0.00 0.00 0.00 4.57
6870 8279 6.313164 GGAACTCATAGTAAAAGTAGTGTGCC 59.687 42.308 0.00 0.00 0.00 5.01
6871 8280 5.731591 ACTCATAGTAAAAGTAGTGTGCCC 58.268 41.667 0.00 0.00 0.00 5.36
6872 8281 5.247564 ACTCATAGTAAAAGTAGTGTGCCCA 59.752 40.000 0.00 0.00 0.00 5.36
6873 8282 6.070194 ACTCATAGTAAAAGTAGTGTGCCCAT 60.070 38.462 0.00 0.00 0.00 4.00
6874 8283 6.112734 TCATAGTAAAAGTAGTGTGCCCATG 58.887 40.000 0.00 0.00 0.00 3.66
6875 8284 4.634012 AGTAAAAGTAGTGTGCCCATGA 57.366 40.909 0.00 0.00 0.00 3.07
6876 8285 4.980573 AGTAAAAGTAGTGTGCCCATGAA 58.019 39.130 0.00 0.00 0.00 2.57
6877 8286 5.570320 AGTAAAAGTAGTGTGCCCATGAAT 58.430 37.500 0.00 0.00 0.00 2.57
6878 8287 6.717289 AGTAAAAGTAGTGTGCCCATGAATA 58.283 36.000 0.00 0.00 0.00 1.75
6879 8288 6.823689 AGTAAAAGTAGTGTGCCCATGAATAG 59.176 38.462 0.00 0.00 0.00 1.73
6880 8289 4.844349 AAGTAGTGTGCCCATGAATAGT 57.156 40.909 0.00 0.00 0.00 2.12
6881 8290 4.844349 AGTAGTGTGCCCATGAATAGTT 57.156 40.909 0.00 0.00 0.00 2.24
6882 8291 4.517285 AGTAGTGTGCCCATGAATAGTTG 58.483 43.478 0.00 0.00 0.00 3.16
6883 8292 3.719268 AGTGTGCCCATGAATAGTTGA 57.281 42.857 0.00 0.00 0.00 3.18
6884 8293 4.032960 AGTGTGCCCATGAATAGTTGAA 57.967 40.909 0.00 0.00 0.00 2.69
6885 8294 4.012374 AGTGTGCCCATGAATAGTTGAAG 58.988 43.478 0.00 0.00 0.00 3.02
6886 8295 3.129287 GTGTGCCCATGAATAGTTGAAGG 59.871 47.826 0.00 0.00 0.00 3.46
6887 8296 3.245229 TGTGCCCATGAATAGTTGAAGGT 60.245 43.478 0.00 0.00 0.00 3.50
6888 8297 3.763897 GTGCCCATGAATAGTTGAAGGTT 59.236 43.478 0.00 0.00 0.00 3.50
6889 8298 3.763360 TGCCCATGAATAGTTGAAGGTTG 59.237 43.478 0.00 0.00 0.00 3.77
6890 8299 3.763897 GCCCATGAATAGTTGAAGGTTGT 59.236 43.478 0.00 0.00 0.00 3.32
6891 8300 4.947388 GCCCATGAATAGTTGAAGGTTGTA 59.053 41.667 0.00 0.00 0.00 2.41
6892 8301 5.417580 GCCCATGAATAGTTGAAGGTTGTAA 59.582 40.000 0.00 0.00 0.00 2.41
6893 8302 6.071616 GCCCATGAATAGTTGAAGGTTGTAAA 60.072 38.462 0.00 0.00 0.00 2.01
6894 8303 7.363793 GCCCATGAATAGTTGAAGGTTGTAAAT 60.364 37.037 0.00 0.00 0.00 1.40
6895 8304 8.190784 CCCATGAATAGTTGAAGGTTGTAAATC 58.809 37.037 0.00 0.00 0.00 2.17
6896 8305 8.960591 CCATGAATAGTTGAAGGTTGTAAATCT 58.039 33.333 0.00 0.00 40.59 2.40
6901 8310 9.787435 AATAGTTGAAGGTTGTAAATCTACACA 57.213 29.630 0.00 0.00 35.13 3.72
6902 8311 9.959721 ATAGTTGAAGGTTGTAAATCTACACAT 57.040 29.630 0.00 0.00 35.13 3.21
6903 8312 8.324163 AGTTGAAGGTTGTAAATCTACACATC 57.676 34.615 0.00 0.00 35.13 3.06
6904 8313 8.157476 AGTTGAAGGTTGTAAATCTACACATCT 58.843 33.333 0.00 0.00 35.13 2.90
6905 8314 9.431887 GTTGAAGGTTGTAAATCTACACATCTA 57.568 33.333 0.00 0.00 35.13 1.98
6906 8315 9.653287 TTGAAGGTTGTAAATCTACACATCTAG 57.347 33.333 0.00 0.00 35.13 2.43
6907 8316 9.031537 TGAAGGTTGTAAATCTACACATCTAGA 57.968 33.333 0.00 0.00 35.13 2.43
6910 8319 8.643324 AGGTTGTAAATCTACACATCTAGATCC 58.357 37.037 1.03 0.00 33.78 3.36
6911 8320 8.421784 GGTTGTAAATCTACACATCTAGATCCA 58.578 37.037 1.03 0.00 37.77 3.41
6912 8321 9.250624 GTTGTAAATCTACACATCTAGATCCAC 57.749 37.037 1.03 0.00 37.77 4.02
6913 8322 7.952671 TGTAAATCTACACATCTAGATCCACC 58.047 38.462 1.03 0.00 33.11 4.61
6914 8323 5.713792 AATCTACACATCTAGATCCACCG 57.286 43.478 1.03 0.00 33.11 4.94
6915 8324 4.432980 TCTACACATCTAGATCCACCGA 57.567 45.455 1.03 0.00 0.00 4.69
6916 8325 4.390264 TCTACACATCTAGATCCACCGAG 58.610 47.826 1.03 0.00 0.00 4.63
6917 8326 3.019799 ACACATCTAGATCCACCGAGT 57.980 47.619 1.03 0.00 0.00 4.18
6918 8327 2.690497 ACACATCTAGATCCACCGAGTG 59.310 50.000 1.03 8.71 0.00 3.51
6919 8328 2.952310 CACATCTAGATCCACCGAGTGA 59.048 50.000 1.03 0.00 35.23 3.41
6920 8329 3.571828 CACATCTAGATCCACCGAGTGAT 59.428 47.826 1.03 0.00 35.23 3.06
6921 8330 3.571828 ACATCTAGATCCACCGAGTGATG 59.428 47.826 1.03 0.00 35.23 3.07
6922 8331 3.298686 TCTAGATCCACCGAGTGATGT 57.701 47.619 5.71 0.00 35.23 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.321564 TTGTGGAAGGGATGAGCACG 60.322 55.000 0.00 0.00 0.00 5.34
9 10 2.905415 AATTGTGGAAGGGATGAGCA 57.095 45.000 0.00 0.00 0.00 4.26
27 28 7.719633 GCATGGTTAGAGGATGGTATAGAAAAA 59.280 37.037 0.00 0.00 0.00 1.94
28 29 7.147391 TGCATGGTTAGAGGATGGTATAGAAAA 60.147 37.037 0.00 0.00 0.00 2.29
30 31 5.843969 TGCATGGTTAGAGGATGGTATAGAA 59.156 40.000 0.00 0.00 0.00 2.10
35 36 3.384168 ACTGCATGGTTAGAGGATGGTA 58.616 45.455 0.00 0.00 0.00 3.25
36 37 2.171448 GACTGCATGGTTAGAGGATGGT 59.829 50.000 0.00 0.00 0.00 3.55
39 40 2.481441 TGGACTGCATGGTTAGAGGAT 58.519 47.619 0.00 0.00 0.00 3.24
49 50 1.998315 CGTCTCTTCTTGGACTGCATG 59.002 52.381 0.00 0.00 0.00 4.06
50 51 1.674221 GCGTCTCTTCTTGGACTGCAT 60.674 52.381 0.00 0.00 34.66 3.96
74 75 5.370289 AGGGACGGGAAATATATGGTTACAA 59.630 40.000 0.00 0.00 0.00 2.41
210 211 5.012239 ACTTATTACACTCTGGTGGTCGTA 58.988 41.667 1.29 0.00 46.85 3.43
232 233 3.654414 CGGGAATCTGCTTATACTCCAC 58.346 50.000 0.00 0.00 0.00 4.02
233 234 2.037251 GCGGGAATCTGCTTATACTCCA 59.963 50.000 0.00 0.00 41.88 3.86
234 235 2.689646 GCGGGAATCTGCTTATACTCC 58.310 52.381 0.00 0.00 41.88 3.85
344 380 0.586802 TATCTCGTCTGCGACCATCG 59.413 55.000 0.00 0.00 42.81 3.84
348 384 2.273370 TTTGTATCTCGTCTGCGACC 57.727 50.000 0.00 0.00 42.81 4.79
356 392 0.108992 TCGCGGCTTTTGTATCTCGT 60.109 50.000 6.13 0.00 0.00 4.18
359 395 0.036765 TGGTCGCGGCTTTTGTATCT 60.037 50.000 11.94 0.00 0.00 1.98
362 398 2.311701 CGTGGTCGCGGCTTTTGTA 61.312 57.895 11.94 0.00 0.00 2.41
427 475 4.329697 ACGGATCGATCGGAGCGC 62.330 66.667 32.19 12.43 0.00 5.92
428 476 2.127194 GACGGATCGATCGGAGCG 60.127 66.667 32.19 24.41 0.00 5.03
429 477 2.255856 GGACGGATCGATCGGAGC 59.744 66.667 32.19 23.39 0.00 4.70
430 478 2.556792 CGGACGGATCGATCGGAG 59.443 66.667 32.19 21.51 0.00 4.63
431 479 3.657059 GCGGACGGATCGATCGGA 61.657 66.667 32.19 2.25 0.00 4.55
432 480 4.702081 GGCGGACGGATCGATCGG 62.702 72.222 26.13 26.13 0.00 4.18
433 481 4.702081 GGGCGGACGGATCGATCG 62.702 72.222 18.81 9.36 0.00 3.69
472 520 2.128729 GGAGCGGATCCTTGTAGCT 58.871 57.895 10.75 10.60 45.64 3.32
601 651 2.674380 AAGCGGAGGCAAGGCAAG 60.674 61.111 0.00 0.00 43.41 4.01
602 652 2.985282 CAAGCGGAGGCAAGGCAA 60.985 61.111 0.00 0.00 43.41 4.52
605 655 2.282462 AACCAAGCGGAGGCAAGG 60.282 61.111 0.00 0.00 43.41 3.61
677 890 3.786048 CGAGTCAAACAAAACAAGTGAGC 59.214 43.478 0.00 0.00 0.00 4.26
678 891 4.969816 ACGAGTCAAACAAAACAAGTGAG 58.030 39.130 0.00 0.00 0.00 3.51
768 983 2.364317 TCCTCCTCCGAGCCAAGG 60.364 66.667 4.19 4.19 34.49 3.61
775 990 1.610673 AGCTTTGCTCCTCCTCCGA 60.611 57.895 0.00 0.00 30.62 4.55
926 1145 2.743928 GAGCACCCGCACTCCAAG 60.744 66.667 0.00 0.00 42.27 3.61
979 1198 1.667830 CTCGCTCGCCTCCACAAAA 60.668 57.895 0.00 0.00 0.00 2.44
981 1200 4.069232 CCTCGCTCGCCTCCACAA 62.069 66.667 0.00 0.00 0.00 3.33
988 1207 4.615815 ATCCATGCCTCGCTCGCC 62.616 66.667 0.00 0.00 0.00 5.54
995 1214 0.035176 GAGCTCCAGATCCATGCCTC 59.965 60.000 0.87 0.00 0.00 4.70
1063 1294 2.180204 CGGCGCCGAATCCAAGAAT 61.180 57.895 44.86 0.00 42.83 2.40
1106 1337 1.335415 GCACACACACACACACACAAA 60.335 47.619 0.00 0.00 0.00 2.83
1107 1338 0.239613 GCACACACACACACACACAA 59.760 50.000 0.00 0.00 0.00 3.33
1108 1339 0.605050 AGCACACACACACACACACA 60.605 50.000 0.00 0.00 0.00 3.72
1109 1340 0.179192 CAGCACACACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
1110 1341 0.321122 TCAGCACACACACACACACA 60.321 50.000 0.00 0.00 0.00 3.72
1111 1342 0.096976 GTCAGCACACACACACACAC 59.903 55.000 0.00 0.00 0.00 3.82
1112 1343 1.357991 CGTCAGCACACACACACACA 61.358 55.000 0.00 0.00 0.00 3.72
1113 1344 1.348250 CGTCAGCACACACACACAC 59.652 57.895 0.00 0.00 0.00 3.82
1114 1345 1.813337 CCGTCAGCACACACACACA 60.813 57.895 0.00 0.00 0.00 3.72
1115 1346 2.534019 CCCGTCAGCACACACACAC 61.534 63.158 0.00 0.00 0.00 3.82
1116 1347 2.203001 CCCGTCAGCACACACACA 60.203 61.111 0.00 0.00 0.00 3.72
1117 1348 1.373590 AAACCCGTCAGCACACACAC 61.374 55.000 0.00 0.00 0.00 3.82
1118 1349 0.678366 AAAACCCGTCAGCACACACA 60.678 50.000 0.00 0.00 0.00 3.72
1119 1350 0.248458 CAAAACCCGTCAGCACACAC 60.248 55.000 0.00 0.00 0.00 3.82
1597 1846 3.549150 CCGAGCAGCGCGAAGAAG 61.549 66.667 21.13 0.00 39.11 2.85
1679 1928 0.041238 TGAACGAGATGGGAGGGAGT 59.959 55.000 0.00 0.00 0.00 3.85
1702 1951 1.599576 GTCAGAGGGCCAAGAGACC 59.400 63.158 6.18 0.00 0.00 3.85
1731 1994 0.881796 GAAAAGGGTTGGAGGAAGCG 59.118 55.000 0.00 0.00 32.41 4.68
1856 2129 7.761249 AGCAAGTAAAATCAAGCATTGGTAATC 59.239 33.333 0.00 0.00 39.53 1.75
1883 2195 0.622665 CCAGCTCAATGGGAAGGAGT 59.377 55.000 0.00 0.00 36.64 3.85
1884 2196 0.622665 ACCAGCTCAATGGGAAGGAG 59.377 55.000 0.00 0.00 45.25 3.69
1885 2197 1.075601 AACCAGCTCAATGGGAAGGA 58.924 50.000 0.00 0.00 45.25 3.36
1886 2198 1.928868 AAACCAGCTCAATGGGAAGG 58.071 50.000 0.00 0.00 45.25 3.46
1887 2199 4.272489 TGATAAACCAGCTCAATGGGAAG 58.728 43.478 0.00 0.00 45.25 3.46
1892 2204 5.747197 GCTCAAATGATAAACCAGCTCAATG 59.253 40.000 0.00 0.00 0.00 2.82
1927 2244 8.177663 CCAATCAAACATAGCAAGTTAGTAGTG 58.822 37.037 0.00 0.00 0.00 2.74
2027 2347 4.806247 AGAGCAAACAAGCATACGAGTATC 59.194 41.667 0.00 0.00 36.85 2.24
2033 2353 1.197492 TGCAGAGCAAACAAGCATACG 59.803 47.619 0.00 0.00 34.76 3.06
2229 2549 0.987294 AGGATTCCACCCAGTGACAG 59.013 55.000 5.29 0.00 35.23 3.51
2320 2644 4.060038 AGTCTGTGTTCTTGTGTGTAGG 57.940 45.455 0.00 0.00 0.00 3.18
2331 2655 6.138761 CAGCACTTCAAATAAGTCTGTGTTC 58.861 40.000 0.00 0.00 0.00 3.18
2355 2679 0.741221 CTTCCGAGCCTGCAGGTAAC 60.741 60.000 32.81 21.77 37.57 2.50
2407 2731 3.770666 ACAGTCGTACCTGAATTGATCG 58.229 45.455 6.18 0.00 36.30 3.69
2552 2965 1.265905 GGTTTGCGTCACCCTAACTTG 59.734 52.381 0.00 0.00 0.00 3.16
2582 3382 3.452627 ACTTAATCACTTGAGCCTCCGAT 59.547 43.478 0.00 0.00 0.00 4.18
2671 3620 3.007614 CCTCGTACTTTGAAAAGAGGGGA 59.992 47.826 9.71 1.48 40.98 4.81
3090 4292 4.261994 GTGAAACATGGTGTGCAATACCTT 60.262 41.667 18.96 11.93 43.02 3.50
3221 4453 7.271936 CACGTTTTAGTGTGTTTGTTCAATT 57.728 32.000 0.00 0.00 37.35 2.32
3401 4633 2.895404 TCCCTCCAGTATATAACACCGC 59.105 50.000 0.00 0.00 0.00 5.68
3517 4750 9.316594 TGATCCACGTATATAAAGGATAAAGGA 57.683 33.333 10.31 0.00 39.10 3.36
3518 4751 9.367444 GTGATCCACGTATATAAAGGATAAAGG 57.633 37.037 10.31 0.00 39.10 3.11
3519 4752 9.923143 TGTGATCCACGTATATAAAGGATAAAG 57.077 33.333 10.31 0.00 39.10 1.85
3627 4861 3.257375 GTGGACCAAACAAGGGGATAAAC 59.743 47.826 0.00 0.00 0.00 2.01
4109 5356 5.237996 CCACTGATATGAACGCAATCTGATT 59.762 40.000 0.00 0.00 0.00 2.57
4610 5911 8.543774 GGAAAGAACTGTCATCATATTAACTCG 58.456 37.037 0.00 0.00 0.00 4.18
4699 6043 2.290641 GGTTAGGACTGCCGCAATTATG 59.709 50.000 0.00 0.00 39.96 1.90
5020 6364 0.611714 GAAGGGCCGAGGTTCAGTAA 59.388 55.000 0.00 0.00 0.00 2.24
5023 6367 1.376037 GTGAAGGGCCGAGGTTCAG 60.376 63.158 6.21 0.00 30.94 3.02
5094 6438 2.432146 GGAGAAAATGGCTGGAATTCCC 59.568 50.000 21.90 7.11 34.29 3.97
5178 6522 2.867624 AGAAGGATGCAAGCTGAAACA 58.132 42.857 0.00 0.00 0.00 2.83
5179 6523 5.573337 AATAGAAGGATGCAAGCTGAAAC 57.427 39.130 0.00 0.00 0.00 2.78
5187 6531 7.123098 ACATGTTGATGAAATAGAAGGATGCAA 59.877 33.333 0.00 0.00 33.36 4.08
5199 6543 5.070180 TGGTCCACAAACATGTTGATGAAAT 59.930 36.000 12.82 0.00 33.36 2.17
5201 6545 3.956848 TGGTCCACAAACATGTTGATGAA 59.043 39.130 12.82 0.00 33.36 2.57
5203 6547 4.050553 GTTGGTCCACAAACATGTTGATG 58.949 43.478 12.82 13.00 41.58 3.07
5204 6548 3.960102 AGTTGGTCCACAAACATGTTGAT 59.040 39.130 12.82 0.00 41.58 2.57
5209 6553 8.735315 TGTTATATAAGTTGGTCCACAAACATG 58.265 33.333 0.00 0.00 41.58 3.21
5231 6575 7.041644 CCGAGGTACAATTCAGAAAAACTGTTA 60.042 37.037 0.00 0.00 45.86 2.41
5232 6576 6.238648 CCGAGGTACAATTCAGAAAAACTGTT 60.239 38.462 0.00 0.00 45.86 3.16
5234 6578 5.468746 TCCGAGGTACAATTCAGAAAAACTG 59.531 40.000 0.00 0.00 46.97 3.16
5236 6580 5.934935 TCCGAGGTACAATTCAGAAAAAC 57.065 39.130 0.00 0.00 0.00 2.43
5238 6582 4.454504 GCTTCCGAGGTACAATTCAGAAAA 59.545 41.667 0.00 0.00 0.00 2.29
5242 6586 3.252974 AGCTTCCGAGGTACAATTCAG 57.747 47.619 0.00 0.00 0.00 3.02
5243 6587 3.244422 ACAAGCTTCCGAGGTACAATTCA 60.244 43.478 0.00 0.00 32.23 2.57
5244 6588 3.335579 ACAAGCTTCCGAGGTACAATTC 58.664 45.455 0.00 0.00 32.23 2.17
5245 6589 3.418684 ACAAGCTTCCGAGGTACAATT 57.581 42.857 0.00 0.00 32.23 2.32
5246 6590 3.767673 TCTACAAGCTTCCGAGGTACAAT 59.232 43.478 0.00 0.00 32.23 2.71
5253 6597 1.203523 AGCACTCTACAAGCTTCCGAG 59.796 52.381 0.00 5.32 34.37 4.63
5255 6599 2.086054 AAGCACTCTACAAGCTTCCG 57.914 50.000 0.00 0.00 44.67 4.30
5292 6661 3.574396 CACAGAGAAAGACCAGTACCTGA 59.426 47.826 0.00 0.00 32.44 3.86
5585 6972 1.308069 CGGCCCATCAACTTCACCAG 61.308 60.000 0.00 0.00 0.00 4.00
5586 6973 1.303236 CGGCCCATCAACTTCACCA 60.303 57.895 0.00 0.00 0.00 4.17
5638 7037 1.165907 TTCTTTCGCTGTGGTGCCAG 61.166 55.000 0.00 0.00 35.49 4.85
5763 7162 1.379044 GGCCTTCATGTGGGAGTGG 60.379 63.158 0.00 0.00 0.00 4.00
5817 7216 5.122512 TCAGGAACTCGTAGAAGAAGTTG 57.877 43.478 0.00 0.00 34.60 3.16
5919 7318 0.950116 AGCCGGCTACGTACTATCAC 59.050 55.000 31.86 0.00 38.78 3.06
5928 7327 1.626654 CTTTCACACAGCCGGCTACG 61.627 60.000 32.30 25.02 40.55 3.51
5929 7328 0.602905 ACTTTCACACAGCCGGCTAC 60.603 55.000 32.30 0.00 0.00 3.58
5930 7329 0.602638 CACTTTCACACAGCCGGCTA 60.603 55.000 32.30 10.98 0.00 3.93
5931 7330 1.893808 CACTTTCACACAGCCGGCT 60.894 57.895 27.08 27.08 0.00 5.52
5932 7331 1.444119 TTCACTTTCACACAGCCGGC 61.444 55.000 21.89 21.89 0.00 6.13
5933 7332 0.588252 CTTCACTTTCACACAGCCGG 59.412 55.000 0.00 0.00 0.00 6.13
5934 7333 0.040958 GCTTCACTTTCACACAGCCG 60.041 55.000 0.00 0.00 0.00 5.52
5935 7334 1.312815 AGCTTCACTTTCACACAGCC 58.687 50.000 0.00 0.00 0.00 4.85
5949 7350 6.039717 ACACTTGATCTGATCTCTCTAGCTTC 59.960 42.308 17.82 0.00 0.00 3.86
5953 7354 7.099266 ACAACACTTGATCTGATCTCTCTAG 57.901 40.000 17.82 9.84 0.00 2.43
5968 7369 2.936498 ACAGACGGAGAAACAACACTTG 59.064 45.455 0.00 0.00 0.00 3.16
6057 7458 1.095600 GCCTGTTTGTTAGCCTAGCC 58.904 55.000 0.00 0.00 0.00 3.93
6058 7459 1.740025 CTGCCTGTTTGTTAGCCTAGC 59.260 52.381 0.00 0.00 0.00 3.42
6059 7460 1.740025 GCTGCCTGTTTGTTAGCCTAG 59.260 52.381 0.00 0.00 0.00 3.02
6060 7461 1.073125 TGCTGCCTGTTTGTTAGCCTA 59.927 47.619 0.00 0.00 33.60 3.93
6061 7462 0.178992 TGCTGCCTGTTTGTTAGCCT 60.179 50.000 0.00 0.00 33.60 4.58
6434 7842 3.714798 AGACTTCCAGTTCCACCAGTAAA 59.285 43.478 0.00 0.00 0.00 2.01
6511 7919 6.694411 TCCGTAAAGAATAGTGATCTAAACGC 59.306 38.462 0.00 0.00 35.52 4.84
6512 7920 7.378995 CCTCCGTAAAGAATAGTGATCTAAACG 59.621 40.741 0.00 0.00 36.09 3.60
6513 7921 7.652507 CCCTCCGTAAAGAATAGTGATCTAAAC 59.347 40.741 0.00 0.00 0.00 2.01
6514 7922 7.562454 TCCCTCCGTAAAGAATAGTGATCTAAA 59.438 37.037 0.00 0.00 0.00 1.85
6515 7923 7.064866 TCCCTCCGTAAAGAATAGTGATCTAA 58.935 38.462 0.00 0.00 0.00 2.10
6516 7924 6.607970 TCCCTCCGTAAAGAATAGTGATCTA 58.392 40.000 0.00 0.00 0.00 1.98
6518 7926 5.302313 ACTCCCTCCGTAAAGAATAGTGATC 59.698 44.000 0.00 0.00 0.00 2.92
6519 7927 5.209659 ACTCCCTCCGTAAAGAATAGTGAT 58.790 41.667 0.00 0.00 0.00 3.06
6520 7928 4.607239 ACTCCCTCCGTAAAGAATAGTGA 58.393 43.478 0.00 0.00 0.00 3.41
6521 7929 5.593502 AGTACTCCCTCCGTAAAGAATAGTG 59.406 44.000 0.00 0.00 0.00 2.74
6522 7930 5.764432 AGTACTCCCTCCGTAAAGAATAGT 58.236 41.667 0.00 0.00 0.00 2.12
6523 7931 7.814264 TTAGTACTCCCTCCGTAAAGAATAG 57.186 40.000 0.00 0.00 0.00 1.73
6525 7933 8.953223 ATATTAGTACTCCCTCCGTAAAGAAT 57.047 34.615 0.00 0.00 0.00 2.40
6526 7934 8.773033 AATATTAGTACTCCCTCCGTAAAGAA 57.227 34.615 0.00 0.00 0.00 2.52
6528 7936 8.406730 AGAATATTAGTACTCCCTCCGTAAAG 57.593 38.462 0.00 0.00 0.00 1.85
6529 7937 8.773033 AAGAATATTAGTACTCCCTCCGTAAA 57.227 34.615 0.00 0.00 0.00 2.01
6530 7938 7.173907 CGAAGAATATTAGTACTCCCTCCGTAA 59.826 40.741 0.00 0.00 0.00 3.18
6531 7939 6.652481 CGAAGAATATTAGTACTCCCTCCGTA 59.348 42.308 0.00 0.00 0.00 4.02
6532 7940 5.472820 CGAAGAATATTAGTACTCCCTCCGT 59.527 44.000 0.00 0.00 0.00 4.69
6534 7942 7.521871 TTCGAAGAATATTAGTACTCCCTCC 57.478 40.000 0.00 0.00 45.90 4.30
6535 7943 7.085746 GCTTCGAAGAATATTAGTACTCCCTC 58.914 42.308 28.95 0.25 45.90 4.30
6536 7944 6.550108 TGCTTCGAAGAATATTAGTACTCCCT 59.450 38.462 28.95 0.00 45.90 4.20
6537 7945 6.641723 GTGCTTCGAAGAATATTAGTACTCCC 59.358 42.308 28.95 5.42 45.90 4.30
6538 7946 6.641723 GGTGCTTCGAAGAATATTAGTACTCC 59.358 42.308 28.95 12.28 45.90 3.85
6539 7947 7.201145 TGGTGCTTCGAAGAATATTAGTACTC 58.799 38.462 28.95 6.50 45.90 2.59
6540 7948 7.108841 TGGTGCTTCGAAGAATATTAGTACT 57.891 36.000 28.95 0.00 45.90 2.73
6541 7949 7.948278 ATGGTGCTTCGAAGAATATTAGTAC 57.052 36.000 28.95 9.13 45.90 2.73
6547 7955 7.445121 TCAAGATATGGTGCTTCGAAGAATAT 58.555 34.615 28.95 21.21 45.90 1.28
6598 8006 7.920682 ACATTGACACATTCTTCAAGGTAAAAC 59.079 33.333 0.13 0.00 43.07 2.43
6649 8057 9.030452 ACCCAAGATACTCATGATTCTACTATC 57.970 37.037 0.00 0.00 0.00 2.08
6651 8059 7.255977 GCACCCAAGATACTCATGATTCTACTA 60.256 40.741 0.00 0.00 0.00 1.82
6698 8107 4.830046 TGCCAAAAAGGTAAATGACTGCTA 59.170 37.500 0.00 0.00 40.61 3.49
6699 8108 3.640967 TGCCAAAAAGGTAAATGACTGCT 59.359 39.130 0.00 0.00 40.61 4.24
6700 8109 3.740832 GTGCCAAAAAGGTAAATGACTGC 59.259 43.478 0.00 0.00 40.61 4.40
6701 8110 5.200368 AGTGCCAAAAAGGTAAATGACTG 57.800 39.130 0.00 0.00 40.61 3.51
6702 8111 6.016276 CACTAGTGCCAAAAAGGTAAATGACT 60.016 38.462 10.54 0.00 40.61 3.41
6705 8114 6.084326 ACACTAGTGCCAAAAAGGTAAATG 57.916 37.500 22.90 0.00 40.61 2.32
6733 8142 5.843421 AGCCTTCTGATACCATCATTCTACT 59.157 40.000 0.00 0.00 38.85 2.57
6734 8143 6.107901 AGCCTTCTGATACCATCATTCTAC 57.892 41.667 0.00 0.00 38.85 2.59
6735 8144 8.441311 AATAGCCTTCTGATACCATCATTCTA 57.559 34.615 0.00 0.00 38.85 2.10
6736 8145 6.949117 ATAGCCTTCTGATACCATCATTCT 57.051 37.500 0.00 0.00 38.85 2.40
6737 8146 7.768120 CCTAATAGCCTTCTGATACCATCATTC 59.232 40.741 0.00 0.00 38.85 2.67
6738 8147 7.628234 CCTAATAGCCTTCTGATACCATCATT 58.372 38.462 0.00 0.00 38.85 2.57
6739 8148 6.352565 GCCTAATAGCCTTCTGATACCATCAT 60.353 42.308 0.00 0.00 38.85 2.45
6740 8149 5.046304 GCCTAATAGCCTTCTGATACCATCA 60.046 44.000 0.00 0.00 37.76 3.07
6741 8150 5.046304 TGCCTAATAGCCTTCTGATACCATC 60.046 44.000 0.00 0.00 0.00 3.51
6742 8151 4.846367 TGCCTAATAGCCTTCTGATACCAT 59.154 41.667 0.00 0.00 0.00 3.55
6743 8152 4.231273 TGCCTAATAGCCTTCTGATACCA 58.769 43.478 0.00 0.00 0.00 3.25
6744 8153 4.826556 CTGCCTAATAGCCTTCTGATACC 58.173 47.826 0.00 0.00 0.00 2.73
6745 8154 4.249661 GCTGCCTAATAGCCTTCTGATAC 58.750 47.826 0.00 0.00 35.15 2.24
6746 8155 4.543590 GCTGCCTAATAGCCTTCTGATA 57.456 45.455 0.00 0.00 35.15 2.15
6747 8156 3.415457 GCTGCCTAATAGCCTTCTGAT 57.585 47.619 0.00 0.00 35.15 2.90
6748 8157 2.918712 GCTGCCTAATAGCCTTCTGA 57.081 50.000 0.00 0.00 35.15 3.27
6755 8164 2.368875 TCCTACTTGGCTGCCTAATAGC 59.631 50.000 21.03 0.00 40.41 2.97
6756 8165 4.530161 AGATCCTACTTGGCTGCCTAATAG 59.470 45.833 21.03 15.42 35.26 1.73
6757 8166 4.493618 AGATCCTACTTGGCTGCCTAATA 58.506 43.478 21.03 5.62 35.26 0.98
6758 8167 3.321950 AGATCCTACTTGGCTGCCTAAT 58.678 45.455 21.03 4.52 35.26 1.73
6759 8168 2.764269 AGATCCTACTTGGCTGCCTAA 58.236 47.619 21.03 11.34 35.26 2.69
6760 8169 2.478872 AGATCCTACTTGGCTGCCTA 57.521 50.000 21.03 11.84 35.26 3.93
6761 8170 2.043227 GTAGATCCTACTTGGCTGCCT 58.957 52.381 21.03 1.67 35.26 4.75
6762 8171 1.762957 TGTAGATCCTACTTGGCTGCC 59.237 52.381 12.87 12.87 35.26 4.85
6763 8172 3.543680 TTGTAGATCCTACTTGGCTGC 57.456 47.619 5.82 0.00 35.26 5.25
6764 8173 5.344743 TCTTTGTAGATCCTACTTGGCTG 57.655 43.478 5.82 0.00 35.26 4.85
6765 8174 6.013293 AGTTTCTTTGTAGATCCTACTTGGCT 60.013 38.462 5.82 0.00 35.26 4.75
6766 8175 6.174049 AGTTTCTTTGTAGATCCTACTTGGC 58.826 40.000 5.82 0.00 35.26 4.52
6767 8176 9.892130 ATAAGTTTCTTTGTAGATCCTACTTGG 57.108 33.333 5.82 0.00 37.10 3.61
6777 8186 9.209175 GCTCTCTTTCATAAGTTTCTTTGTAGA 57.791 33.333 0.00 0.00 32.98 2.59
6778 8187 8.447053 GGCTCTCTTTCATAAGTTTCTTTGTAG 58.553 37.037 0.00 0.00 32.98 2.74
6779 8188 8.157476 AGGCTCTCTTTCATAAGTTTCTTTGTA 58.843 33.333 0.00 0.00 32.98 2.41
6780 8189 7.001073 AGGCTCTCTTTCATAAGTTTCTTTGT 58.999 34.615 0.00 0.00 32.98 2.83
6781 8190 7.173907 TCAGGCTCTCTTTCATAAGTTTCTTTG 59.826 37.037 0.00 0.00 32.98 2.77
6782 8191 7.227156 TCAGGCTCTCTTTCATAAGTTTCTTT 58.773 34.615 0.00 0.00 32.98 2.52
6783 8192 6.773638 TCAGGCTCTCTTTCATAAGTTTCTT 58.226 36.000 0.00 0.00 32.98 2.52
6784 8193 6.365970 TCAGGCTCTCTTTCATAAGTTTCT 57.634 37.500 0.00 0.00 32.98 2.52
6785 8194 7.470900 CATTCAGGCTCTCTTTCATAAGTTTC 58.529 38.462 0.00 0.00 32.98 2.78
6786 8195 6.127786 GCATTCAGGCTCTCTTTCATAAGTTT 60.128 38.462 0.00 0.00 32.98 2.66
6787 8196 5.356470 GCATTCAGGCTCTCTTTCATAAGTT 59.644 40.000 0.00 0.00 32.98 2.66
6788 8197 4.880696 GCATTCAGGCTCTCTTTCATAAGT 59.119 41.667 0.00 0.00 32.98 2.24
6789 8198 4.275443 GGCATTCAGGCTCTCTTTCATAAG 59.725 45.833 0.00 0.00 40.24 1.73
6790 8199 4.202441 GGCATTCAGGCTCTCTTTCATAA 58.798 43.478 0.00 0.00 40.24 1.90
6791 8200 3.813443 GGCATTCAGGCTCTCTTTCATA 58.187 45.455 0.00 0.00 40.24 2.15
6792 8201 2.652590 GGCATTCAGGCTCTCTTTCAT 58.347 47.619 0.00 0.00 40.24 2.57
6793 8202 2.119801 GGCATTCAGGCTCTCTTTCA 57.880 50.000 0.00 0.00 40.24 2.69
6802 8211 1.891150 CCCATCAATAGGCATTCAGGC 59.109 52.381 0.00 0.00 44.61 4.85
6803 8212 3.513909 TCCCATCAATAGGCATTCAGG 57.486 47.619 0.00 0.00 0.00 3.86
6804 8213 6.718454 ACTATTTCCCATCAATAGGCATTCAG 59.282 38.462 5.02 0.00 38.19 3.02
6805 8214 6.491062 CACTATTTCCCATCAATAGGCATTCA 59.509 38.462 5.02 0.00 38.19 2.57
6806 8215 6.491403 ACACTATTTCCCATCAATAGGCATTC 59.509 38.462 5.02 0.00 38.19 2.67
6807 8216 6.376248 ACACTATTTCCCATCAATAGGCATT 58.624 36.000 5.02 0.00 38.19 3.56
6808 8217 5.957132 ACACTATTTCCCATCAATAGGCAT 58.043 37.500 5.02 0.00 38.19 4.40
6809 8218 5.387113 ACACTATTTCCCATCAATAGGCA 57.613 39.130 5.02 0.00 38.19 4.75
6810 8219 5.827797 TGAACACTATTTCCCATCAATAGGC 59.172 40.000 5.02 0.00 38.19 3.93
6811 8220 7.880160 TTGAACACTATTTCCCATCAATAGG 57.120 36.000 5.02 0.00 38.19 2.57
6820 8229 9.442047 CCTCTCATATATTGAACACTATTTCCC 57.558 37.037 0.00 0.00 32.78 3.97
6826 8235 9.421399 TGAGTTCCTCTCATATATTGAACACTA 57.579 33.333 0.00 0.00 46.77 2.74
6827 8236 8.311395 TGAGTTCCTCTCATATATTGAACACT 57.689 34.615 0.00 0.00 46.77 3.55
6841 8250 8.741841 ACACTACTTTTACTATGAGTTCCTCTC 58.258 37.037 0.00 0.00 43.03 3.20
6842 8251 8.524487 CACACTACTTTTACTATGAGTTCCTCT 58.476 37.037 0.00 0.00 0.00 3.69
6843 8252 7.275999 GCACACTACTTTTACTATGAGTTCCTC 59.724 40.741 0.00 0.00 0.00 3.71
6844 8253 7.097834 GCACACTACTTTTACTATGAGTTCCT 58.902 38.462 0.00 0.00 0.00 3.36
6845 8254 6.313164 GGCACACTACTTTTACTATGAGTTCC 59.687 42.308 0.00 0.00 0.00 3.62
6846 8255 6.313164 GGGCACACTACTTTTACTATGAGTTC 59.687 42.308 0.00 0.00 0.00 3.01
6847 8256 6.171213 GGGCACACTACTTTTACTATGAGTT 58.829 40.000 0.00 0.00 0.00 3.01
6848 8257 5.247564 TGGGCACACTACTTTTACTATGAGT 59.752 40.000 0.00 0.00 0.00 3.41
6849 8258 5.730550 TGGGCACACTACTTTTACTATGAG 58.269 41.667 0.00 0.00 0.00 2.90
6850 8259 5.748670 TGGGCACACTACTTTTACTATGA 57.251 39.130 0.00 0.00 0.00 2.15
6851 8260 6.112734 TCATGGGCACACTACTTTTACTATG 58.887 40.000 0.00 0.00 0.00 2.23
6852 8261 6.308015 TCATGGGCACACTACTTTTACTAT 57.692 37.500 0.00 0.00 0.00 2.12
6853 8262 5.748670 TCATGGGCACACTACTTTTACTA 57.251 39.130 0.00 0.00 0.00 1.82
6854 8263 4.634012 TCATGGGCACACTACTTTTACT 57.366 40.909 0.00 0.00 0.00 2.24
6855 8264 5.897377 ATTCATGGGCACACTACTTTTAC 57.103 39.130 0.00 0.00 0.00 2.01
6856 8265 6.717289 ACTATTCATGGGCACACTACTTTTA 58.283 36.000 0.00 0.00 0.00 1.52
6857 8266 5.570320 ACTATTCATGGGCACACTACTTTT 58.430 37.500 0.00 0.00 0.00 2.27
6858 8267 5.179452 ACTATTCATGGGCACACTACTTT 57.821 39.130 0.00 0.00 0.00 2.66
6859 8268 4.844349 ACTATTCATGGGCACACTACTT 57.156 40.909 0.00 0.00 0.00 2.24
6860 8269 4.225042 TCAACTATTCATGGGCACACTACT 59.775 41.667 0.00 0.00 0.00 2.57
6861 8270 4.513442 TCAACTATTCATGGGCACACTAC 58.487 43.478 0.00 0.00 0.00 2.73
6862 8271 4.835284 TCAACTATTCATGGGCACACTA 57.165 40.909 0.00 0.00 0.00 2.74
6863 8272 3.719268 TCAACTATTCATGGGCACACT 57.281 42.857 0.00 0.00 0.00 3.55
6864 8273 3.129287 CCTTCAACTATTCATGGGCACAC 59.871 47.826 0.00 0.00 0.00 3.82
6865 8274 3.245229 ACCTTCAACTATTCATGGGCACA 60.245 43.478 0.00 0.00 0.00 4.57
6866 8275 3.356290 ACCTTCAACTATTCATGGGCAC 58.644 45.455 0.00 0.00 0.00 5.01
6867 8276 3.737559 ACCTTCAACTATTCATGGGCA 57.262 42.857 0.00 0.00 0.00 5.36
6868 8277 3.763897 ACAACCTTCAACTATTCATGGGC 59.236 43.478 0.00 0.00 0.00 5.36
6869 8278 7.461182 TTTACAACCTTCAACTATTCATGGG 57.539 36.000 0.00 0.00 0.00 4.00
6870 8279 8.960591 AGATTTACAACCTTCAACTATTCATGG 58.039 33.333 0.00 0.00 0.00 3.66
6875 8284 9.787435 TGTGTAGATTTACAACCTTCAACTATT 57.213 29.630 0.00 0.00 41.25 1.73
6876 8285 9.959721 ATGTGTAGATTTACAACCTTCAACTAT 57.040 29.630 0.00 0.00 41.25 2.12
6877 8286 9.431887 GATGTGTAGATTTACAACCTTCAACTA 57.568 33.333 0.00 0.00 41.25 2.24
6878 8287 8.157476 AGATGTGTAGATTTACAACCTTCAACT 58.843 33.333 0.00 0.00 41.25 3.16
6879 8288 8.324163 AGATGTGTAGATTTACAACCTTCAAC 57.676 34.615 0.00 0.00 41.25 3.18
6880 8289 9.653287 CTAGATGTGTAGATTTACAACCTTCAA 57.347 33.333 0.00 0.00 41.25 2.69
6881 8290 9.031537 TCTAGATGTGTAGATTTACAACCTTCA 57.968 33.333 0.00 0.00 41.25 3.02
6884 8293 8.643324 GGATCTAGATGTGTAGATTTACAACCT 58.357 37.037 10.74 0.00 41.25 3.50
6885 8294 8.421784 TGGATCTAGATGTGTAGATTTACAACC 58.578 37.037 10.74 0.00 41.25 3.77
6886 8295 9.250624 GTGGATCTAGATGTGTAGATTTACAAC 57.749 37.037 10.74 0.00 41.25 3.32
6887 8296 8.421784 GGTGGATCTAGATGTGTAGATTTACAA 58.578 37.037 10.74 0.00 41.25 2.41
6888 8297 7.255486 CGGTGGATCTAGATGTGTAGATTTACA 60.255 40.741 10.74 0.00 39.44 2.41
6889 8298 7.040617 TCGGTGGATCTAGATGTGTAGATTTAC 60.041 40.741 10.74 4.51 39.44 2.01
6890 8299 7.002276 TCGGTGGATCTAGATGTGTAGATTTA 58.998 38.462 10.74 0.00 39.44 1.40
6891 8300 5.833667 TCGGTGGATCTAGATGTGTAGATTT 59.166 40.000 10.74 0.00 39.44 2.17
6892 8301 5.386060 TCGGTGGATCTAGATGTGTAGATT 58.614 41.667 10.74 0.00 39.44 2.40
6893 8302 4.986783 TCGGTGGATCTAGATGTGTAGAT 58.013 43.478 10.74 0.00 41.59 1.98
6894 8303 4.141459 ACTCGGTGGATCTAGATGTGTAGA 60.141 45.833 10.74 3.56 33.52 2.59
6895 8304 4.023622 CACTCGGTGGATCTAGATGTGTAG 60.024 50.000 10.74 2.79 0.00 2.74
6896 8305 3.883489 CACTCGGTGGATCTAGATGTGTA 59.117 47.826 10.74 0.00 0.00 2.90
6897 8306 2.690497 CACTCGGTGGATCTAGATGTGT 59.310 50.000 10.74 0.00 0.00 3.72
6898 8307 2.952310 TCACTCGGTGGATCTAGATGTG 59.048 50.000 10.74 10.07 33.87 3.21
6899 8308 3.298686 TCACTCGGTGGATCTAGATGT 57.701 47.619 10.74 0.00 33.87 3.06
6900 8309 3.571828 ACATCACTCGGTGGATCTAGATG 59.428 47.826 10.74 0.00 38.02 2.90
6901 8310 3.838565 ACATCACTCGGTGGATCTAGAT 58.161 45.455 4.47 4.47 33.87 1.98
6902 8311 3.298686 ACATCACTCGGTGGATCTAGA 57.701 47.619 0.00 0.00 33.87 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.