Multiple sequence alignment - TraesCS6A01G291200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G291200 chr6A 100.000 5659 0 0 1 5659 522613980 522619638 0.000000e+00 10451.0
1 TraesCS6A01G291200 chr6A 100.000 31 0 0 2654 2684 522616542 522616572 2.200000e-04 58.4
2 TraesCS6A01G291200 chr6A 100.000 31 0 0 2563 2593 522616633 522616663 2.200000e-04 58.4
3 TraesCS6A01G291200 chr6D 94.405 5022 191 41 1 4979 381350439 381355413 0.000000e+00 7635.0
4 TraesCS6A01G291200 chr6D 88.663 344 30 4 4977 5311 381355494 381355837 1.470000e-110 411.0
5 TraesCS6A01G291200 chr6D 94.845 97 5 0 5314 5410 381355997 381356093 9.820000e-33 152.0
6 TraesCS6A01G291200 chr6B 94.767 4911 162 40 3 4846 569039028 569034146 0.000000e+00 7557.0
7 TraesCS6A01G291200 chr6B 86.614 254 20 12 5409 5659 666282814 666282572 9.350000e-68 268.0
8 TraesCS6A01G291200 chr6B 86.614 254 20 12 5409 5659 666314794 666314552 9.350000e-68 268.0
9 TraesCS6A01G291200 chr6B 96.330 109 2 2 4844 4951 569034033 569033926 1.620000e-40 178.0
10 TraesCS6A01G291200 chr6B 78.125 256 37 15 5411 5658 47869377 47869621 1.640000e-30 145.0
11 TraesCS6A01G291200 chr6B 100.000 31 0 0 2654 2684 569036433 569036403 2.200000e-04 58.4
12 TraesCS6A01G291200 chr7A 88.803 259 17 5 5408 5659 10153815 10154068 1.980000e-79 307.0
13 TraesCS6A01G291200 chr3B 90.865 208 16 3 3156 3362 52656855 52656650 5.580000e-70 276.0
14 TraesCS6A01G291200 chr2D 76.661 557 86 32 1873 2390 459811629 459811078 9.350000e-68 268.0
15 TraesCS6A01G291200 chr2B 76.208 559 86 36 1873 2390 541016518 541015966 9.410000e-63 252.0
16 TraesCS6A01G291200 chr2B 78.571 98 8 12 5563 5658 104051113 104051027 1.000000e-02 52.8
17 TraesCS6A01G291200 chr3A 76.536 537 75 27 1913 2403 693447430 693446899 4.380000e-61 246.0
18 TraesCS6A01G291200 chr2A 85.957 235 27 6 2161 2390 602769977 602769744 4.380000e-61 246.0
19 TraesCS6A01G291200 chr7B 87.215 219 21 6 2195 2408 162144094 162143878 5.660000e-60 243.0
20 TraesCS6A01G291200 chr7B 77.455 275 39 15 1870 2133 162144369 162144107 5.910000e-30 143.0
21 TraesCS6A01G291200 chr7D 78.866 194 26 10 1964 2145 197929883 197929693 3.580000e-22 117.0
22 TraesCS6A01G291200 chr4B 87.255 102 11 2 5503 5604 558032972 558032873 1.290000e-21 115.0
23 TraesCS6A01G291200 chrUn 76.587 252 32 21 5411 5658 96663259 96663487 4.630000e-21 113.0
24 TraesCS6A01G291200 chrUn 83.495 103 17 0 2734 2836 141495236 141495338 4.670000e-16 97.1
25 TraesCS6A01G291200 chrUn 83.495 103 17 0 2734 2836 141518850 141518952 4.670000e-16 97.1
26 TraesCS6A01G291200 chrUn 83.495 103 17 0 2734 2836 141558739 141558841 4.670000e-16 97.1
27 TraesCS6A01G291200 chrUn 83.495 103 17 0 2734 2836 141598655 141598757 4.670000e-16 97.1
28 TraesCS6A01G291200 chrUn 83.495 103 17 0 2734 2836 141622137 141622239 4.670000e-16 97.1
29 TraesCS6A01G291200 chr3D 84.884 86 7 4 1982 2064 557659749 557659667 1.310000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G291200 chr6A 522613980 522619638 5658 False 3522.600000 10451 100.000000 1 5659 3 chr6A.!!$F1 5658
1 TraesCS6A01G291200 chr6D 381350439 381356093 5654 False 2732.666667 7635 92.637667 1 5410 3 chr6D.!!$F1 5409
2 TraesCS6A01G291200 chr6B 569033926 569039028 5102 True 2597.800000 7557 97.032333 3 4951 3 chr6B.!!$R3 4948
3 TraesCS6A01G291200 chr2D 459811078 459811629 551 True 268.000000 268 76.661000 1873 2390 1 chr2D.!!$R1 517
4 TraesCS6A01G291200 chr2B 541015966 541016518 552 True 252.000000 252 76.208000 1873 2390 1 chr2B.!!$R2 517
5 TraesCS6A01G291200 chr3A 693446899 693447430 531 True 246.000000 246 76.536000 1913 2403 1 chr3A.!!$R1 490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 637 0.036858 AGGCTCGCTCTGTTTTCCTC 60.037 55.000 0.00 0.0 0.00 3.71 F
841 864 0.458669 CAATCATGCCCTTCTGTGCC 59.541 55.000 0.00 0.0 0.00 5.01 F
1359 1412 3.403276 CGAGACCAAGTCGTTCCTC 57.597 57.895 0.00 0.0 37.67 3.71 F
1503 1565 4.148825 GCGACATCGGCTGGGACT 62.149 66.667 3.08 0.0 40.23 3.85 F
3082 3205 0.874390 GTTGCAAGGCGATCAGAACA 59.126 50.000 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 1565 0.606604 GGAGCAGAACCGTGGAGTTA 59.393 55.000 0.00 0.0 0.00 2.24 R
2320 2439 1.081892 CCAATCCGAGTGTTGCTGAG 58.918 55.000 0.00 0.0 0.00 3.35 R
3082 3205 0.385029 TGCTTGCATGTTTCGCAGTT 59.615 45.000 1.14 0.0 41.18 3.16 R
3362 3485 2.409870 CCCATCGGTCTTTGCTGGC 61.410 63.158 0.00 0.0 0.00 4.85 R
5007 5350 0.183492 ACCAGTGAACACCATGCACT 59.817 50.000 0.00 0.0 43.16 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 4.407296 TGTGGCAATAAAATTCCCATACCC 59.593 41.667 0.00 0.00 0.00 3.69
76 79 0.103572 GTCCTCCGTAATTGCGCCTA 59.896 55.000 10.71 0.00 0.00 3.93
182 185 8.189119 TGCCAATAAATTTCAAAACTAGACCT 57.811 30.769 0.00 0.00 0.00 3.85
184 187 8.303876 GCCAATAAATTTCAAAACTAGACCTCA 58.696 33.333 0.00 0.00 0.00 3.86
214 218 1.145759 CGTCGCGGTAGCATCAACAT 61.146 55.000 6.13 0.00 45.49 2.71
225 229 2.409055 ATCAACATGCGCACGCCAT 61.409 52.632 14.90 0.00 41.09 4.40
226 230 1.094650 ATCAACATGCGCACGCCATA 61.095 50.000 14.90 0.00 41.09 2.74
227 231 1.297819 CAACATGCGCACGCCATAG 60.298 57.895 14.90 0.00 41.09 2.23
262 269 3.637273 GTCCACCAAGCTCCCCGT 61.637 66.667 0.00 0.00 0.00 5.28
266 273 1.002134 CACCAAGCTCCCCGTGATT 60.002 57.895 0.00 0.00 0.00 2.57
332 347 2.930562 GGCTGTGGTGAGAGGGGT 60.931 66.667 0.00 0.00 0.00 4.95
383 398 1.377463 ACCTCGTGAGACCTCCTCG 60.377 63.158 0.00 0.00 44.92 4.63
397 412 1.129251 CTCCTCGTAACGCTTCGTGTA 59.871 52.381 0.00 0.00 39.99 2.90
399 414 2.107178 CCTCGTAACGCTTCGTGTATC 58.893 52.381 0.00 0.00 39.99 2.24
400 415 1.766301 CTCGTAACGCTTCGTGTATCG 59.234 52.381 0.00 0.00 39.99 2.92
401 416 1.128507 TCGTAACGCTTCGTGTATCGT 59.871 47.619 0.00 0.00 39.99 3.73
402 417 1.506320 CGTAACGCTTCGTGTATCGTC 59.494 52.381 0.00 0.00 39.99 4.20
404 419 1.614385 AACGCTTCGTGTATCGTCTG 58.386 50.000 0.00 0.00 39.99 3.51
405 420 0.800631 ACGCTTCGTGTATCGTCTGA 59.199 50.000 0.00 0.00 39.18 3.27
406 421 1.198408 ACGCTTCGTGTATCGTCTGAA 59.802 47.619 0.00 0.00 39.18 3.02
407 422 1.578023 CGCTTCGTGTATCGTCTGAAC 59.422 52.381 0.00 0.00 40.80 3.18
454 470 4.067896 GCACAAAGAAGAGGTCAGATTGA 58.932 43.478 0.00 0.00 0.00 2.57
475 491 1.285078 AGGGGCTACAATTCAAGGTCC 59.715 52.381 0.00 0.00 0.00 4.46
521 538 3.724716 CGATGCACATTAACAACACTCGG 60.725 47.826 0.00 0.00 0.00 4.63
526 543 4.390603 GCACATTAACAACACTCGGACATA 59.609 41.667 0.00 0.00 0.00 2.29
568 585 5.345702 CGTCCACGTCCTGATTCTTATAAA 58.654 41.667 0.00 0.00 34.11 1.40
569 586 5.808540 CGTCCACGTCCTGATTCTTATAAAA 59.191 40.000 0.00 0.00 34.11 1.52
570 587 6.479001 CGTCCACGTCCTGATTCTTATAAAAT 59.521 38.462 0.00 0.00 34.11 1.82
572 589 9.321562 GTCCACGTCCTGATTCTTATAAAATTA 57.678 33.333 0.00 0.00 0.00 1.40
573 590 9.321562 TCCACGTCCTGATTCTTATAAAATTAC 57.678 33.333 0.00 0.00 0.00 1.89
574 591 8.273557 CCACGTCCTGATTCTTATAAAATTACG 58.726 37.037 0.00 0.00 0.00 3.18
575 592 9.027129 CACGTCCTGATTCTTATAAAATTACGA 57.973 33.333 0.00 0.00 0.00 3.43
576 593 9.590451 ACGTCCTGATTCTTATAAAATTACGAA 57.410 29.630 0.00 5.80 0.00 3.85
577 594 9.845305 CGTCCTGATTCTTATAAAATTACGAAC 57.155 33.333 0.00 0.00 0.00 3.95
620 637 0.036858 AGGCTCGCTCTGTTTTCCTC 60.037 55.000 0.00 0.00 0.00 3.71
676 693 4.915667 GGTTTTGGTTTCATCGCTAAACTC 59.084 41.667 0.00 0.00 37.09 3.01
719 742 6.092670 GCACATGTCACCAGCGATTATATATT 59.907 38.462 0.00 0.00 0.00 1.28
720 743 7.277760 GCACATGTCACCAGCGATTATATATTA 59.722 37.037 0.00 0.00 0.00 0.98
721 744 9.317936 CACATGTCACCAGCGATTATATATTAT 57.682 33.333 0.00 0.00 0.00 1.28
766 789 2.478746 CGTAAGCCAATGCGCGTT 59.521 55.556 9.57 9.57 44.33 4.84
841 864 0.458669 CAATCATGCCCTTCTGTGCC 59.541 55.000 0.00 0.00 0.00 5.01
1359 1412 3.403276 CGAGACCAAGTCGTTCCTC 57.597 57.895 0.00 0.00 37.67 3.71
1503 1565 4.148825 GCGACATCGGCTGGGACT 62.149 66.667 3.08 0.00 40.23 3.85
1576 1638 5.992829 TGCGTACCAATTCTTCAGAAGTTTA 59.007 36.000 10.09 0.00 37.48 2.01
1633 1695 8.805175 TGCCTTATGATTCAATTTCAAGAAAGA 58.195 29.630 1.48 0.00 33.32 2.52
1795 1862 7.396907 AGAAAATGTTTGGGTGATGTGATGATA 59.603 33.333 0.00 0.00 0.00 2.15
1796 1863 6.455360 AATGTTTGGGTGATGTGATGATAC 57.545 37.500 0.00 0.00 0.00 2.24
1797 1864 5.178096 TGTTTGGGTGATGTGATGATACT 57.822 39.130 0.00 0.00 0.00 2.12
1802 1869 8.686334 GTTTGGGTGATGTGATGATACTATTTT 58.314 33.333 0.00 0.00 0.00 1.82
1844 1911 4.879545 ACAGGTTAGAAGTTTCGCTTTCAA 59.120 37.500 0.00 0.00 37.59 2.69
1898 1965 7.605449 AGTAAATTATATGTCCATTGCCATGC 58.395 34.615 0.00 0.00 0.00 4.06
1986 2057 7.502177 GATGAAATCATTTTAGGCATATGCG 57.498 36.000 21.04 5.92 44.70 4.73
2142 2258 6.336842 GCACATCCATAGCCATAAAGAAAT 57.663 37.500 0.00 0.00 0.00 2.17
2320 2439 7.715249 TGGTGTAGTAAAGAGAATATCCAATGC 59.285 37.037 0.00 0.00 0.00 3.56
2936 3059 9.890629 TTTGAGTATATCAGTTTGTGATTAGCT 57.109 29.630 0.00 0.00 44.05 3.32
3082 3205 0.874390 GTTGCAAGGCGATCAGAACA 59.126 50.000 0.00 0.00 0.00 3.18
3093 3216 2.220824 CGATCAGAACAACTGCGAAACA 59.779 45.455 0.00 0.00 45.38 2.83
3362 3485 0.890996 AAGGCCAGCTTTTGTCCTCG 60.891 55.000 5.01 0.00 0.00 4.63
3746 3881 4.709250 TGTCAGCAACTTATACCACACAA 58.291 39.130 0.00 0.00 0.00 3.33
3922 4057 2.690786 TCGTTTGGGTGAAGTTATCCG 58.309 47.619 0.00 0.00 0.00 4.18
3971 4106 9.334947 CTTGTAACATGTCAGATTAAGGATGAT 57.665 33.333 0.00 0.00 0.00 2.45
4016 4151 5.352284 AGCTCAGATACGACATTACCTTTG 58.648 41.667 0.00 0.00 0.00 2.77
4078 4213 1.209747 GATGTCTCTTTTAGGGGCGGT 59.790 52.381 0.00 0.00 0.00 5.68
4098 4233 4.697756 TTCGACAGGCAAGCCCCG 62.698 66.667 7.62 9.39 36.58 5.73
4341 4476 2.941064 TGCTGAGAACTCATGCTTATGC 59.059 45.455 18.76 12.26 39.13 3.14
4356 4499 6.271488 TGCTTATGCTTATTGTTCTTGCTT 57.729 33.333 1.96 0.00 40.48 3.91
4389 4532 3.711190 AGGAAAAGGGCAATGTTTGTCTT 59.289 39.130 0.00 0.00 35.12 3.01
4425 4568 3.465742 ACAGAGATCAATCATGGGTCG 57.534 47.619 0.00 0.00 0.00 4.79
4502 4645 4.397382 CTGTGCAGTGACACGATTAATTG 58.603 43.478 11.39 0.78 43.74 2.32
4503 4646 3.812609 TGTGCAGTGACACGATTAATTGT 59.187 39.130 2.21 2.21 43.74 2.71
4556 4699 3.005554 CCATTCAGATGTTTCTCTGCGT 58.994 45.455 0.00 0.00 42.00 5.24
4604 4747 2.447379 AGGCAGATCGGATGGGCT 60.447 61.111 8.86 8.86 0.00 5.19
4709 4852 4.060038 AGTGGCACAATAGAGAATACCG 57.940 45.455 21.41 0.00 44.16 4.02
4721 4864 0.727398 GAATACCGTTGGAGCTGCAC 59.273 55.000 7.72 2.39 0.00 4.57
4722 4865 0.036164 AATACCGTTGGAGCTGCACA 59.964 50.000 7.72 0.00 0.00 4.57
4725 4868 1.005037 CCGTTGGAGCTGCACACTA 60.005 57.895 7.72 0.00 0.00 2.74
4742 4885 2.036862 CACTAGATAGCAGCTGCCATCA 59.963 50.000 37.15 25.39 40.77 3.07
4748 4892 3.506096 CAGCTGCCATCAGTGCCG 61.506 66.667 0.00 0.00 42.29 5.69
4760 4904 5.056480 CCATCAGTGCCGTATTTCATCTAA 58.944 41.667 0.00 0.00 0.00 2.10
4784 4928 1.224592 CTAGCCATGGTTCCCGCTT 59.775 57.895 14.67 0.00 32.76 4.68
4813 4957 8.625651 TGTTGTAATACTTGTTTGTAATGCACT 58.374 29.630 0.00 0.00 0.00 4.40
4904 5164 2.363788 TTGAAGTCAATAGCGCGTCT 57.636 45.000 8.43 8.22 0.00 4.18
4917 5177 2.161410 AGCGCGTCTTGAAATTATGCAA 59.839 40.909 8.43 0.00 0.00 4.08
4993 5336 3.134081 TGTATGTAGTTTCCAGGCCTAGC 59.866 47.826 3.98 0.00 0.00 3.42
4994 5337 1.651737 TGTAGTTTCCAGGCCTAGCA 58.348 50.000 3.98 0.00 0.00 3.49
5013 5356 2.288640 GCAAAAAGCTCCTTCAGTGCAT 60.289 45.455 0.00 0.00 41.15 3.96
5016 5359 0.403271 AAGCTCCTTCAGTGCATGGT 59.597 50.000 0.00 0.00 37.44 3.55
5019 5362 1.901591 CTCCTTCAGTGCATGGTGTT 58.098 50.000 0.00 0.00 0.00 3.32
5025 5368 3.025924 AGTGCATGGTGTTCACTGG 57.974 52.632 2.57 0.00 39.36 4.00
5038 5381 5.885912 GGTGTTCACTGGTATGTTTATCCAT 59.114 40.000 2.98 0.00 0.00 3.41
5040 5383 5.885352 TGTTCACTGGTATGTTTATCCATGG 59.115 40.000 4.97 4.97 0.00 3.66
5067 5417 4.332819 ACATGAACTTGCTTAGCGATAACC 59.667 41.667 0.00 0.00 0.00 2.85
5072 5422 4.189231 ACTTGCTTAGCGATAACCGATTT 58.811 39.130 0.00 0.00 41.76 2.17
5092 5442 9.791838 CCGATTTATACAAAAACTTGAAAAAGC 57.208 29.630 0.00 0.00 0.00 3.51
5099 5449 9.986833 ATACAAAAACTTGAAAAAGCATGAAAC 57.013 25.926 0.00 0.00 0.00 2.78
5100 5450 8.098220 ACAAAAACTTGAAAAAGCATGAAACT 57.902 26.923 0.00 0.00 0.00 2.66
5101 5451 8.016801 ACAAAAACTTGAAAAAGCATGAAACTG 58.983 29.630 0.00 0.00 0.00 3.16
5112 5463 3.503748 AGCATGAAACTGGTCACTTAAGC 59.496 43.478 1.29 0.00 0.00 3.09
5120 5471 3.073062 ACTGGTCACTTAAGCCTTGATGT 59.927 43.478 1.29 0.00 0.00 3.06
5165 5516 1.332889 ATCAGCTGCCAGATCGGACA 61.333 55.000 9.47 0.00 36.56 4.02
5185 5536 0.179156 CCATGTCATCAAAGTGGCGC 60.179 55.000 0.00 0.00 0.00 6.53
5187 5538 2.202349 GTCATCAAAGTGGCGCGC 60.202 61.111 25.94 25.94 0.00 6.86
5188 5539 2.667874 TCATCAAAGTGGCGCGCA 60.668 55.556 34.42 16.55 0.00 6.09
5290 5642 9.325198 GAAATGAAAACTTGTAAAAATGGTCCT 57.675 29.630 0.00 0.00 0.00 3.85
5311 5663 4.385447 CCTGTTTTGCCATGAAATAACACG 59.615 41.667 0.00 0.00 0.00 4.49
5320 5829 6.183360 TGCCATGAAATAACACGTGTATGTAC 60.183 38.462 23.69 14.14 30.75 2.90
5326 5835 8.652463 TGAAATAACACGTGTATGTACTCAATG 58.348 33.333 23.69 0.00 30.75 2.82
5357 5866 0.473755 TCAAGAGCTTGGTGCCTCAA 59.526 50.000 10.09 0.00 44.23 3.02
5378 5887 7.110043 TCAATTTTGTTAGGTTTTTACCCGT 57.890 32.000 0.00 0.00 0.00 5.28
5388 5897 8.985805 GTTAGGTTTTTACCCGTATATGATCAG 58.014 37.037 0.09 0.00 0.00 2.90
5437 5946 9.804547 TTTTTGCGAAAATAATTCTTGCATTAC 57.195 25.926 7.81 0.00 30.07 1.89
5438 5947 8.755696 TTTGCGAAAATAATTCTTGCATTACT 57.244 26.923 0.00 0.00 0.00 2.24
5439 5948 7.969387 TGCGAAAATAATTCTTGCATTACTC 57.031 32.000 0.00 0.00 0.00 2.59
5440 5949 7.534282 TGCGAAAATAATTCTTGCATTACTCA 58.466 30.769 0.00 0.00 0.00 3.41
5441 5950 8.026026 TGCGAAAATAATTCTTGCATTACTCAA 58.974 29.630 0.00 0.00 0.00 3.02
5442 5951 8.859156 GCGAAAATAATTCTTGCATTACTCAAA 58.141 29.630 0.00 0.00 0.00 2.69
5449 5958 6.942532 TTCTTGCATTACTCAAAGTTCAGT 57.057 33.333 0.00 0.00 0.00 3.41
5450 5959 6.942532 TCTTGCATTACTCAAAGTTCAGTT 57.057 33.333 0.00 0.00 0.00 3.16
5451 5960 7.333528 TCTTGCATTACTCAAAGTTCAGTTT 57.666 32.000 0.00 0.00 0.00 2.66
5452 5961 8.445275 TCTTGCATTACTCAAAGTTCAGTTTA 57.555 30.769 0.00 0.00 0.00 2.01
5453 5962 8.342634 TCTTGCATTACTCAAAGTTCAGTTTAC 58.657 33.333 0.00 0.00 0.00 2.01
5454 5963 7.561021 TGCATTACTCAAAGTTCAGTTTACA 57.439 32.000 0.00 0.00 0.00 2.41
5455 5964 8.165239 TGCATTACTCAAAGTTCAGTTTACAT 57.835 30.769 0.00 0.00 0.00 2.29
5456 5965 8.289618 TGCATTACTCAAAGTTCAGTTTACATC 58.710 33.333 0.00 0.00 0.00 3.06
5457 5966 8.507249 GCATTACTCAAAGTTCAGTTTACATCT 58.493 33.333 0.00 0.00 0.00 2.90
5459 5968 6.771188 ACTCAAAGTTCAGTTTACATCTCG 57.229 37.500 0.00 0.00 0.00 4.04
5460 5969 6.281405 ACTCAAAGTTCAGTTTACATCTCGT 58.719 36.000 0.00 0.00 0.00 4.18
5461 5970 6.761714 ACTCAAAGTTCAGTTTACATCTCGTT 59.238 34.615 0.00 0.00 0.00 3.85
5462 5971 7.042658 ACTCAAAGTTCAGTTTACATCTCGTTC 60.043 37.037 0.00 0.00 0.00 3.95
5463 5972 6.759356 TCAAAGTTCAGTTTACATCTCGTTCA 59.241 34.615 0.00 0.00 0.00 3.18
5464 5973 7.279090 TCAAAGTTCAGTTTACATCTCGTTCAA 59.721 33.333 0.00 0.00 0.00 2.69
5465 5974 6.526566 AGTTCAGTTTACATCTCGTTCAAC 57.473 37.500 0.00 0.00 0.00 3.18
5466 5975 6.046593 AGTTCAGTTTACATCTCGTTCAACA 58.953 36.000 0.00 0.00 0.00 3.33
5467 5976 6.537301 AGTTCAGTTTACATCTCGTTCAACAA 59.463 34.615 0.00 0.00 0.00 2.83
5468 5977 7.226720 AGTTCAGTTTACATCTCGTTCAACAAT 59.773 33.333 0.00 0.00 0.00 2.71
5469 5978 7.117241 TCAGTTTACATCTCGTTCAACAATC 57.883 36.000 0.00 0.00 0.00 2.67
5470 5979 6.929049 TCAGTTTACATCTCGTTCAACAATCT 59.071 34.615 0.00 0.00 0.00 2.40
5471 5980 7.116376 TCAGTTTACATCTCGTTCAACAATCTC 59.884 37.037 0.00 0.00 0.00 2.75
5472 5981 6.369065 AGTTTACATCTCGTTCAACAATCTCC 59.631 38.462 0.00 0.00 0.00 3.71
5473 5982 4.271696 ACATCTCGTTCAACAATCTCCA 57.728 40.909 0.00 0.00 0.00 3.86
5474 5983 4.248859 ACATCTCGTTCAACAATCTCCAG 58.751 43.478 0.00 0.00 0.00 3.86
5475 5984 3.319137 TCTCGTTCAACAATCTCCAGG 57.681 47.619 0.00 0.00 0.00 4.45
5476 5985 2.897326 TCTCGTTCAACAATCTCCAGGA 59.103 45.455 0.00 0.00 0.00 3.86
5477 5986 2.996621 CTCGTTCAACAATCTCCAGGAC 59.003 50.000 0.00 0.00 0.00 3.85
5478 5987 2.076863 CGTTCAACAATCTCCAGGACC 58.923 52.381 0.00 0.00 0.00 4.46
5479 5988 2.289694 CGTTCAACAATCTCCAGGACCT 60.290 50.000 0.00 0.00 0.00 3.85
5480 5989 3.756117 GTTCAACAATCTCCAGGACCTT 58.244 45.455 0.00 0.00 0.00 3.50
5481 5990 4.145052 GTTCAACAATCTCCAGGACCTTT 58.855 43.478 0.00 0.00 0.00 3.11
5482 5991 4.453480 TCAACAATCTCCAGGACCTTTT 57.547 40.909 0.00 0.00 0.00 2.27
5483 5992 4.398319 TCAACAATCTCCAGGACCTTTTC 58.602 43.478 0.00 0.00 0.00 2.29
5484 5993 3.441500 ACAATCTCCAGGACCTTTTCC 57.558 47.619 0.00 0.00 46.33 3.13
5491 6000 4.716003 GGACCTTTTCCGGACCAG 57.284 61.111 1.83 2.22 38.53 4.00
5492 6001 2.063774 GGACCTTTTCCGGACCAGA 58.936 57.895 1.83 0.00 38.53 3.86
5493 6002 0.036294 GGACCTTTTCCGGACCAGAG 60.036 60.000 1.83 0.00 38.53 3.35
5494 6003 0.673956 GACCTTTTCCGGACCAGAGC 60.674 60.000 1.83 0.00 0.00 4.09
5495 6004 1.377333 CCTTTTCCGGACCAGAGCC 60.377 63.158 1.83 0.00 0.00 4.70
5496 6005 1.679898 CTTTTCCGGACCAGAGCCT 59.320 57.895 1.83 0.00 0.00 4.58
5497 6006 0.902531 CTTTTCCGGACCAGAGCCTA 59.097 55.000 1.83 0.00 0.00 3.93
5498 6007 0.902531 TTTTCCGGACCAGAGCCTAG 59.097 55.000 1.83 0.00 0.00 3.02
5499 6008 1.614241 TTTCCGGACCAGAGCCTAGC 61.614 60.000 1.83 0.00 0.00 3.42
5500 6009 3.541713 CCGGACCAGAGCCTAGCC 61.542 72.222 0.00 0.00 0.00 3.93
5501 6010 2.759973 CGGACCAGAGCCTAGCCA 60.760 66.667 0.00 0.00 0.00 4.75
5502 6011 2.359169 CGGACCAGAGCCTAGCCAA 61.359 63.158 0.00 0.00 0.00 4.52
5503 6012 1.899437 CGGACCAGAGCCTAGCCAAA 61.899 60.000 0.00 0.00 0.00 3.28
5504 6013 0.393132 GGACCAGAGCCTAGCCAAAC 60.393 60.000 0.00 0.00 0.00 2.93
5505 6014 0.324943 GACCAGAGCCTAGCCAAACA 59.675 55.000 0.00 0.00 0.00 2.83
5506 6015 0.326264 ACCAGAGCCTAGCCAAACAG 59.674 55.000 0.00 0.00 0.00 3.16
5507 6016 1.028868 CCAGAGCCTAGCCAAACAGC 61.029 60.000 0.00 0.00 0.00 4.40
5508 6017 0.321919 CAGAGCCTAGCCAAACAGCA 60.322 55.000 0.00 0.00 34.23 4.41
5509 6018 0.035630 AGAGCCTAGCCAAACAGCAG 60.036 55.000 0.00 0.00 34.23 4.24
5510 6019 0.322008 GAGCCTAGCCAAACAGCAGT 60.322 55.000 0.00 0.00 34.23 4.40
5511 6020 0.111253 AGCCTAGCCAAACAGCAGTT 59.889 50.000 0.00 0.00 40.40 3.16
5520 6029 1.585297 AAACAGCAGTTTGGCATTGC 58.415 45.000 6.41 0.00 45.79 3.56
5521 6030 0.464870 AACAGCAGTTTGGCATTGCA 59.535 45.000 11.39 0.00 40.22 4.08
5522 6031 0.464870 ACAGCAGTTTGGCATTGCAA 59.535 45.000 11.39 0.00 40.22 4.08
5523 6032 0.863144 CAGCAGTTTGGCATTGCAAC 59.137 50.000 11.39 7.32 40.22 4.17
5524 6033 0.249996 AGCAGTTTGGCATTGCAACC 60.250 50.000 11.39 0.00 40.22 3.77
5525 6034 0.249996 GCAGTTTGGCATTGCAACCT 60.250 50.000 11.39 0.00 37.75 3.50
5526 6035 1.000731 GCAGTTTGGCATTGCAACCTA 59.999 47.619 11.39 0.00 37.75 3.08
5527 6036 2.676076 CAGTTTGGCATTGCAACCTAC 58.324 47.619 11.39 2.79 0.00 3.18
5528 6037 1.618343 AGTTTGGCATTGCAACCTACC 59.382 47.619 11.39 1.20 0.00 3.18
5529 6038 1.342819 GTTTGGCATTGCAACCTACCA 59.657 47.619 11.39 4.22 0.00 3.25
5530 6039 1.709578 TTGGCATTGCAACCTACCAA 58.290 45.000 16.20 16.20 34.91 3.67
5531 6040 1.709578 TGGCATTGCAACCTACCAAA 58.290 45.000 11.39 0.00 0.00 3.28
5532 6041 2.042464 TGGCATTGCAACCTACCAAAA 58.958 42.857 11.39 0.00 0.00 2.44
5533 6042 2.636893 TGGCATTGCAACCTACCAAAAT 59.363 40.909 11.39 0.00 0.00 1.82
5534 6043 3.072184 TGGCATTGCAACCTACCAAAATT 59.928 39.130 11.39 0.00 0.00 1.82
5535 6044 4.284490 TGGCATTGCAACCTACCAAAATTA 59.716 37.500 11.39 0.00 0.00 1.40
5536 6045 4.869861 GGCATTGCAACCTACCAAAATTAG 59.130 41.667 11.39 0.00 0.00 1.73
5537 6046 4.329801 GCATTGCAACCTACCAAAATTAGC 59.670 41.667 0.00 0.00 0.00 3.09
5538 6047 4.529109 TTGCAACCTACCAAAATTAGCC 57.471 40.909 0.00 0.00 0.00 3.93
5539 6048 3.501349 TGCAACCTACCAAAATTAGCCA 58.499 40.909 0.00 0.00 0.00 4.75
5540 6049 4.093011 TGCAACCTACCAAAATTAGCCAT 58.907 39.130 0.00 0.00 0.00 4.40
5541 6050 4.081752 TGCAACCTACCAAAATTAGCCATG 60.082 41.667 0.00 0.00 0.00 3.66
5542 6051 4.159506 GCAACCTACCAAAATTAGCCATGA 59.840 41.667 0.00 0.00 0.00 3.07
5543 6052 5.337169 GCAACCTACCAAAATTAGCCATGAA 60.337 40.000 0.00 0.00 0.00 2.57
5544 6053 6.332630 CAACCTACCAAAATTAGCCATGAAG 58.667 40.000 0.00 0.00 0.00 3.02
5545 6054 5.580022 ACCTACCAAAATTAGCCATGAAGT 58.420 37.500 0.00 0.00 0.00 3.01
5546 6055 5.418840 ACCTACCAAAATTAGCCATGAAGTG 59.581 40.000 0.00 0.00 0.00 3.16
5547 6056 5.652014 CCTACCAAAATTAGCCATGAAGTGA 59.348 40.000 0.00 0.00 0.00 3.41
5548 6057 5.391312 ACCAAAATTAGCCATGAAGTGAC 57.609 39.130 0.00 0.00 0.00 3.67
5549 6058 5.079643 ACCAAAATTAGCCATGAAGTGACT 58.920 37.500 0.00 0.00 0.00 3.41
5550 6059 6.245408 ACCAAAATTAGCCATGAAGTGACTA 58.755 36.000 0.00 0.00 0.00 2.59
5551 6060 6.375455 ACCAAAATTAGCCATGAAGTGACTAG 59.625 38.462 0.00 0.00 0.00 2.57
5552 6061 6.261118 CAAAATTAGCCATGAAGTGACTAGC 58.739 40.000 0.00 0.00 0.00 3.42
5553 6062 3.543680 TTAGCCATGAAGTGACTAGCC 57.456 47.619 0.00 0.00 0.00 3.93
5554 6063 0.543749 AGCCATGAAGTGACTAGCCC 59.456 55.000 0.00 0.00 0.00 5.19
5555 6064 0.543749 GCCATGAAGTGACTAGCCCT 59.456 55.000 0.00 0.00 0.00 5.19
5556 6065 1.762957 GCCATGAAGTGACTAGCCCTA 59.237 52.381 0.00 0.00 0.00 3.53
5557 6066 2.370189 GCCATGAAGTGACTAGCCCTAT 59.630 50.000 0.00 0.00 0.00 2.57
5558 6067 3.181450 GCCATGAAGTGACTAGCCCTATT 60.181 47.826 0.00 0.00 0.00 1.73
5559 6068 4.040461 GCCATGAAGTGACTAGCCCTATTA 59.960 45.833 0.00 0.00 0.00 0.98
5560 6069 5.542779 CCATGAAGTGACTAGCCCTATTAC 58.457 45.833 0.00 0.00 0.00 1.89
5561 6070 5.070446 CCATGAAGTGACTAGCCCTATTACA 59.930 44.000 0.00 0.00 0.00 2.41
5562 6071 6.408092 CCATGAAGTGACTAGCCCTATTACAA 60.408 42.308 0.00 0.00 0.00 2.41
5563 6072 6.808321 TGAAGTGACTAGCCCTATTACAAT 57.192 37.500 0.00 0.00 0.00 2.71
5564 6073 7.195374 TGAAGTGACTAGCCCTATTACAATT 57.805 36.000 0.00 0.00 0.00 2.32
5565 6074 7.272978 TGAAGTGACTAGCCCTATTACAATTC 58.727 38.462 0.00 0.00 33.58 2.17
5566 6075 6.176014 AGTGACTAGCCCTATTACAATTCC 57.824 41.667 0.00 0.00 0.00 3.01
5567 6076 4.989168 GTGACTAGCCCTATTACAATTCCG 59.011 45.833 0.00 0.00 0.00 4.30
5568 6077 4.897076 TGACTAGCCCTATTACAATTCCGA 59.103 41.667 0.00 0.00 0.00 4.55
5569 6078 5.211174 ACTAGCCCTATTACAATTCCGAC 57.789 43.478 0.00 0.00 0.00 4.79
5570 6079 3.107642 AGCCCTATTACAATTCCGACG 57.892 47.619 0.00 0.00 0.00 5.12
5571 6080 2.696707 AGCCCTATTACAATTCCGACGA 59.303 45.455 0.00 0.00 0.00 4.20
5572 6081 3.057734 GCCCTATTACAATTCCGACGAG 58.942 50.000 0.00 0.00 0.00 4.18
5573 6082 3.243636 GCCCTATTACAATTCCGACGAGA 60.244 47.826 0.00 0.00 0.00 4.04
5574 6083 4.738541 GCCCTATTACAATTCCGACGAGAA 60.739 45.833 0.00 0.00 0.00 2.87
5575 6084 5.539048 CCCTATTACAATTCCGACGAGAAT 58.461 41.667 0.00 0.88 38.11 2.40
5576 6085 5.405571 CCCTATTACAATTCCGACGAGAATG 59.594 44.000 10.88 8.54 36.59 2.67
5577 6086 6.213677 CCTATTACAATTCCGACGAGAATGA 58.786 40.000 10.88 0.00 36.59 2.57
5578 6087 6.363626 CCTATTACAATTCCGACGAGAATGAG 59.636 42.308 10.88 9.64 36.59 2.90
5579 6088 3.594603 ACAATTCCGACGAGAATGAGT 57.405 42.857 10.88 10.10 36.59 3.41
5580 6089 4.713824 ACAATTCCGACGAGAATGAGTA 57.286 40.909 10.88 0.00 36.59 2.59
5581 6090 5.068234 ACAATTCCGACGAGAATGAGTAA 57.932 39.130 10.88 0.00 36.59 2.24
5582 6091 5.661458 ACAATTCCGACGAGAATGAGTAAT 58.339 37.500 10.88 0.00 36.59 1.89
5583 6092 5.520288 ACAATTCCGACGAGAATGAGTAATG 59.480 40.000 10.88 7.85 36.59 1.90
5584 6093 3.079960 TCCGACGAGAATGAGTAATGC 57.920 47.619 0.00 0.00 0.00 3.56
5585 6094 2.425668 TCCGACGAGAATGAGTAATGCA 59.574 45.455 0.00 0.00 0.00 3.96
5586 6095 3.119280 TCCGACGAGAATGAGTAATGCAA 60.119 43.478 0.00 0.00 0.00 4.08
5587 6096 3.243877 CCGACGAGAATGAGTAATGCAAG 59.756 47.826 0.00 0.00 0.00 4.01
5588 6097 4.105486 CGACGAGAATGAGTAATGCAAGA 58.895 43.478 0.00 0.00 0.00 3.02
5589 6098 4.562789 CGACGAGAATGAGTAATGCAAGAA 59.437 41.667 0.00 0.00 0.00 2.52
5590 6099 5.233050 CGACGAGAATGAGTAATGCAAGAAT 59.767 40.000 0.00 0.00 0.00 2.40
5591 6100 6.561166 CGACGAGAATGAGTAATGCAAGAATC 60.561 42.308 0.00 0.00 0.00 2.52
5592 6101 6.344500 ACGAGAATGAGTAATGCAAGAATCT 58.656 36.000 0.00 0.00 0.00 2.40
5593 6102 6.478344 ACGAGAATGAGTAATGCAAGAATCTC 59.522 38.462 0.00 0.00 0.00 2.75
5594 6103 6.700960 CGAGAATGAGTAATGCAAGAATCTCT 59.299 38.462 0.00 0.00 0.00 3.10
5595 6104 7.096106 CGAGAATGAGTAATGCAAGAATCTCTC 60.096 40.741 0.00 0.00 0.00 3.20
5596 6105 7.794041 AGAATGAGTAATGCAAGAATCTCTCT 58.206 34.615 0.00 0.00 35.13 3.10
5597 6106 7.927629 AGAATGAGTAATGCAAGAATCTCTCTC 59.072 37.037 0.00 0.00 31.02 3.20
5598 6107 6.788598 TGAGTAATGCAAGAATCTCTCTCT 57.211 37.500 0.00 0.00 31.02 3.10
5599 6108 6.804677 TGAGTAATGCAAGAATCTCTCTCTC 58.195 40.000 0.00 0.00 31.02 3.20
5600 6109 6.606796 TGAGTAATGCAAGAATCTCTCTCTCT 59.393 38.462 0.00 0.00 31.02 3.10
5601 6110 7.042797 AGTAATGCAAGAATCTCTCTCTCTC 57.957 40.000 0.00 0.00 31.02 3.20
5602 6111 6.835488 AGTAATGCAAGAATCTCTCTCTCTCT 59.165 38.462 0.00 0.00 31.02 3.10
5603 6112 5.779529 ATGCAAGAATCTCTCTCTCTCTC 57.220 43.478 0.00 0.00 31.02 3.20
5604 6113 4.858850 TGCAAGAATCTCTCTCTCTCTCT 58.141 43.478 0.00 0.00 31.02 3.10
5605 6114 4.883585 TGCAAGAATCTCTCTCTCTCTCTC 59.116 45.833 0.00 0.00 31.02 3.20
5606 6115 5.128919 GCAAGAATCTCTCTCTCTCTCTCT 58.871 45.833 0.00 0.00 31.02 3.10
5607 6116 5.238214 GCAAGAATCTCTCTCTCTCTCTCTC 59.762 48.000 0.00 0.00 31.02 3.20
5608 6117 6.351711 CAAGAATCTCTCTCTCTCTCTCTCA 58.648 44.000 0.00 0.00 31.02 3.27
5609 6118 6.760440 AGAATCTCTCTCTCTCTCTCTCAT 57.240 41.667 0.00 0.00 0.00 2.90
5610 6119 7.862274 AGAATCTCTCTCTCTCTCTCTCATA 57.138 40.000 0.00 0.00 0.00 2.15
5611 6120 7.675062 AGAATCTCTCTCTCTCTCTCTCATAC 58.325 42.308 0.00 0.00 0.00 2.39
5612 6121 7.512058 AGAATCTCTCTCTCTCTCTCTCATACT 59.488 40.741 0.00 0.00 0.00 2.12
5613 6122 6.410942 TCTCTCTCTCTCTCTCTCATACTG 57.589 45.833 0.00 0.00 0.00 2.74
5614 6123 5.899547 TCTCTCTCTCTCTCTCTCATACTGT 59.100 44.000 0.00 0.00 0.00 3.55
5615 6124 7.066781 TCTCTCTCTCTCTCTCTCATACTGTA 58.933 42.308 0.00 0.00 0.00 2.74
5616 6125 7.014326 TCTCTCTCTCTCTCTCTCATACTGTAC 59.986 44.444 0.00 0.00 0.00 2.90
5617 6126 6.839134 TCTCTCTCTCTCTCTCATACTGTACT 59.161 42.308 0.00 0.00 0.00 2.73
5618 6127 8.002459 TCTCTCTCTCTCTCTCATACTGTACTA 58.998 40.741 0.00 0.00 0.00 1.82
5619 6128 8.721133 TCTCTCTCTCTCTCATACTGTACTAT 57.279 38.462 0.00 0.00 0.00 2.12
5620 6129 8.803235 TCTCTCTCTCTCTCATACTGTACTATC 58.197 40.741 0.00 0.00 0.00 2.08
5621 6130 8.485578 TCTCTCTCTCTCATACTGTACTATCA 57.514 38.462 0.00 0.00 0.00 2.15
5622 6131 8.929487 TCTCTCTCTCTCATACTGTACTATCAA 58.071 37.037 0.00 0.00 0.00 2.57
5623 6132 9.725019 CTCTCTCTCTCATACTGTACTATCAAT 57.275 37.037 0.00 0.00 0.00 2.57
5624 6133 9.500785 TCTCTCTCTCATACTGTACTATCAATG 57.499 37.037 0.00 0.00 0.00 2.82
5625 6134 9.500785 CTCTCTCTCATACTGTACTATCAATGA 57.499 37.037 0.00 0.00 0.00 2.57
5632 6141 9.799106 TCATACTGTACTATCAATGATCTCTCA 57.201 33.333 0.00 0.00 35.41 3.27
5633 6142 9.838975 CATACTGTACTATCAATGATCTCTCAC 57.161 37.037 0.00 0.00 33.22 3.51
5634 6143 9.806448 ATACTGTACTATCAATGATCTCTCACT 57.194 33.333 0.00 0.00 33.22 3.41
5635 6144 7.939782 ACTGTACTATCAATGATCTCTCACTG 58.060 38.462 0.00 0.00 33.22 3.66
5636 6145 7.559533 ACTGTACTATCAATGATCTCTCACTGT 59.440 37.037 0.00 0.52 33.22 3.55
5637 6146 8.980481 TGTACTATCAATGATCTCTCACTGTA 57.020 34.615 0.00 0.00 33.22 2.74
5638 6147 9.408648 TGTACTATCAATGATCTCTCACTGTAA 57.591 33.333 0.00 0.00 33.22 2.41
5641 6150 9.814899 ACTATCAATGATCTCTCACTGTAAAAG 57.185 33.333 0.00 0.00 33.22 2.27
5642 6151 6.974932 TCAATGATCTCTCACTGTAAAAGC 57.025 37.500 0.00 0.00 33.22 3.51
5643 6152 6.466812 TCAATGATCTCTCACTGTAAAAGCA 58.533 36.000 0.00 0.00 33.22 3.91
5644 6153 7.108194 TCAATGATCTCTCACTGTAAAAGCAT 58.892 34.615 0.00 0.00 33.22 3.79
5645 6154 8.260114 TCAATGATCTCTCACTGTAAAAGCATA 58.740 33.333 0.00 0.00 33.22 3.14
5646 6155 9.053840 CAATGATCTCTCACTGTAAAAGCATAT 57.946 33.333 0.00 0.00 33.22 1.78
5647 6156 9.624373 AATGATCTCTCACTGTAAAAGCATATT 57.376 29.630 0.00 0.00 33.22 1.28
5648 6157 9.624373 ATGATCTCTCACTGTAAAAGCATATTT 57.376 29.630 0.00 0.00 33.22 1.40
5649 6158 9.453572 TGATCTCTCACTGTAAAAGCATATTTT 57.546 29.630 0.00 0.00 0.00 1.82
5650 6159 9.713740 GATCTCTCACTGTAAAAGCATATTTTG 57.286 33.333 0.00 0.00 0.00 2.44
5651 6160 8.846943 TCTCTCACTGTAAAAGCATATTTTGA 57.153 30.769 0.00 0.00 0.00 2.69
5652 6161 9.453572 TCTCTCACTGTAAAAGCATATTTTGAT 57.546 29.630 0.00 0.00 0.00 2.57
5656 6165 9.979578 TCACTGTAAAAGCATATTTTGATTTGT 57.020 25.926 0.00 0.00 42.89 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 79 3.458857 AGTGATCAAGGAGATGGAGCAAT 59.541 43.478 0.00 0.00 37.00 3.56
158 161 8.303876 TGAGGTCTAGTTTTGAAATTTATTGGC 58.696 33.333 0.00 0.00 0.00 4.52
178 181 0.244994 ACGAGTGTGCTGATGAGGTC 59.755 55.000 0.00 0.00 0.00 3.85
182 185 1.444383 GCGACGAGTGTGCTGATGA 60.444 57.895 0.00 0.00 0.00 2.92
184 187 2.504899 CGCGACGAGTGTGCTGAT 60.505 61.111 0.00 0.00 0.00 2.90
188 192 2.874780 CTACCGCGACGAGTGTGC 60.875 66.667 8.23 0.00 0.00 4.57
225 229 2.602676 GGAGGTTGGTGGGCTGCTA 61.603 63.158 0.00 0.00 0.00 3.49
226 230 3.971702 GGAGGTTGGTGGGCTGCT 61.972 66.667 0.00 0.00 0.00 4.24
262 269 2.361104 GCAGCGGGGTTCCAATCA 60.361 61.111 0.00 0.00 0.00 2.57
312 327 4.087892 CCTCTCACCACAGCCGGG 62.088 72.222 2.18 0.00 0.00 5.73
314 329 4.087892 CCCCTCTCACCACAGCCG 62.088 72.222 0.00 0.00 0.00 5.52
318 333 0.544357 CTACCACCCCTCTCACCACA 60.544 60.000 0.00 0.00 0.00 4.17
332 347 2.886134 GCCACCAACCCGTCTACCA 61.886 63.158 0.00 0.00 0.00 3.25
365 380 1.377463 CGAGGAGGTCTCACGAGGT 60.377 63.158 9.76 0.00 42.55 3.85
383 398 2.525096 CAGACGATACACGAAGCGTTAC 59.475 50.000 0.00 0.00 45.77 2.50
454 470 2.291605 GGACCTTGAATTGTAGCCCCTT 60.292 50.000 0.00 0.00 0.00 3.95
475 491 4.457834 AGACGTGTTCCAAGAATAGGAG 57.542 45.455 0.00 0.00 36.33 3.69
526 543 2.500098 ACGTGTAGATGTAACATGGGCT 59.500 45.455 0.00 0.00 38.02 5.19
576 593 4.024048 CGTTGCAATGTTGAACTAGGAAGT 60.024 41.667 10.65 0.00 37.65 3.01
577 594 4.024048 ACGTTGCAATGTTGAACTAGGAAG 60.024 41.667 18.63 0.00 0.00 3.46
620 637 0.326264 ACTGCTTAGTGCCAAGGAGG 59.674 55.000 13.36 0.00 45.38 4.30
676 693 3.799963 TGTGCGTTATATAAGTTGCCGAG 59.200 43.478 6.61 0.00 0.00 4.63
719 742 7.283127 GGGAGTGAACATTGCTTCTGAATAATA 59.717 37.037 0.00 0.00 0.00 0.98
720 743 6.096001 GGGAGTGAACATTGCTTCTGAATAAT 59.904 38.462 0.00 0.00 0.00 1.28
721 744 5.415701 GGGAGTGAACATTGCTTCTGAATAA 59.584 40.000 0.00 0.00 0.00 1.40
766 789 4.747108 CCATGATTTTTGTTTACGTTGGCA 59.253 37.500 0.00 0.00 0.00 4.92
801 824 7.884877 TGATTGGAATTTCTCGGCAGATAATAT 59.115 33.333 0.00 0.00 0.00 1.28
802 825 7.223584 TGATTGGAATTTCTCGGCAGATAATA 58.776 34.615 0.00 0.00 0.00 0.98
841 864 1.264288 GGTCCGCTGACTTGACTTTTG 59.736 52.381 8.25 0.00 41.47 2.44
1161 1214 3.537874 GCGGTAGCCATCGGAGGT 61.538 66.667 0.00 0.00 37.42 3.85
1359 1412 0.543749 CCTTGGGGTAGAGCTGGAAG 59.456 60.000 0.00 0.00 0.00 3.46
1503 1565 0.606604 GGAGCAGAACCGTGGAGTTA 59.393 55.000 0.00 0.00 0.00 2.24
1586 1648 6.072673 AGGCAACGGAGTAAAATTTACTCTTG 60.073 38.462 32.23 29.13 45.00 3.02
1640 1705 8.791327 TTAGTACATCTGATCATCAAAAGCAA 57.209 30.769 0.00 0.00 0.00 3.91
1690 1755 1.523758 AGTTCGCTTTGTCCATCCAC 58.476 50.000 0.00 0.00 0.00 4.02
1836 1903 4.455917 AATGTGCAATTTGTTGAAAGCG 57.544 36.364 0.00 0.00 0.00 4.68
1844 1911 5.021033 TGGAACAGAAATGTGCAATTTGT 57.979 34.783 10.33 5.32 0.00 2.83
1970 2041 5.173774 ACTTCACGCATATGCCTAAAATG 57.826 39.130 21.77 8.41 37.91 2.32
1986 2057 6.456988 CCCGAGTTTTGCATCTTATACTTCAC 60.457 42.308 0.00 0.00 0.00 3.18
2070 2158 9.642343 TCCAGATACAGAAGTAGCTATTCTTAA 57.358 33.333 12.82 7.21 44.65 1.85
2120 2214 9.850628 CATTATTTCTTTATGGCTATGGATGTG 57.149 33.333 0.00 0.00 0.00 3.21
2320 2439 1.081892 CCAATCCGAGTGTTGCTGAG 58.918 55.000 0.00 0.00 0.00 3.35
2936 3059 6.989759 TGAATAAACTTGGATAGAATAGCGCA 59.010 34.615 11.47 0.00 0.00 6.09
3082 3205 0.385029 TGCTTGCATGTTTCGCAGTT 59.615 45.000 1.14 0.00 41.18 3.16
3093 3216 4.520179 TCTCATAGTCACATTGCTTGCAT 58.480 39.130 0.00 0.00 0.00 3.96
3362 3485 2.409870 CCCATCGGTCTTTGCTGGC 61.410 63.158 0.00 0.00 0.00 4.85
3746 3881 7.182060 TCTCCATAATTTACTTTCTGGGCTTT 58.818 34.615 0.00 0.00 0.00 3.51
3942 4077 7.676004 TCCTTAATCTGACATGTTACAAGACA 58.324 34.615 0.00 0.00 0.00 3.41
3943 4078 8.607459 CATCCTTAATCTGACATGTTACAAGAC 58.393 37.037 0.00 0.00 0.00 3.01
3955 4090 6.179906 TGGGAGAATCATCCTTAATCTGAC 57.820 41.667 0.00 0.00 39.50 3.51
3971 4106 3.943671 TCTTGGACAAAACTGGGAGAA 57.056 42.857 0.00 0.00 0.00 2.87
4078 4213 1.295423 GGGCTTGCCTGTCGAACTA 59.705 57.895 11.71 0.00 0.00 2.24
4341 4476 8.514594 TGGAATAAGTCAAGCAAGAACAATAAG 58.485 33.333 0.00 0.00 0.00 1.73
4356 4499 3.075283 TGCCCTTTTCCTGGAATAAGTCA 59.925 43.478 10.45 12.29 0.00 3.41
4389 4532 1.354031 TCTGTTCCATTTAGCAGCCCA 59.646 47.619 0.00 0.00 0.00 5.36
4425 4568 6.585695 TCTATACCTCCGACAATTATGGTC 57.414 41.667 0.00 0.00 0.00 4.02
4502 4645 6.643770 AGAAATGATCATTGCAAGTTTGACAC 59.356 34.615 25.32 3.39 0.00 3.67
4503 4646 6.751157 AGAAATGATCATTGCAAGTTTGACA 58.249 32.000 25.32 5.90 0.00 3.58
4556 4699 4.709250 TGTCATACACAACTAGTTTGCCA 58.291 39.130 5.07 0.00 39.01 4.92
4604 4747 2.224744 TGGCTTGGTGCACTCTGAATTA 60.225 45.455 17.98 0.00 45.15 1.40
4697 4840 3.243907 GCAGCTCCAACGGTATTCTCTAT 60.244 47.826 0.00 0.00 0.00 1.98
4709 4852 2.393271 ATCTAGTGTGCAGCTCCAAC 57.607 50.000 0.00 0.00 0.00 3.77
4721 4864 2.835580 ATGGCAGCTGCTATCTAGTG 57.164 50.000 35.82 0.00 37.75 2.74
4742 4885 5.581085 GTGACTTTAGATGAAATACGGCACT 59.419 40.000 0.00 0.00 29.92 4.40
4748 4892 8.768955 CATGGCTAGTGACTTTAGATGAAATAC 58.231 37.037 0.00 0.00 0.00 1.89
4760 4904 2.789409 GGAACCATGGCTAGTGACTT 57.211 50.000 13.04 0.00 0.00 3.01
4784 4928 9.672086 GCATTACAAACAAGTATTACAACAGAA 57.328 29.630 0.00 0.00 0.00 3.02
4904 5164 4.989797 CACCACAGCTTTGCATAATTTCAA 59.010 37.500 0.00 0.00 0.00 2.69
4957 5217 2.528564 ACATACAGCCTTTGGTTGCAT 58.471 42.857 0.38 0.00 37.43 3.96
4993 5336 3.314553 CATGCACTGAAGGAGCTTTTTG 58.685 45.455 0.00 0.00 0.00 2.44
4994 5337 2.298163 CCATGCACTGAAGGAGCTTTTT 59.702 45.455 0.00 0.00 0.00 1.94
5007 5350 0.183492 ACCAGTGAACACCATGCACT 59.817 50.000 0.00 0.00 43.16 4.40
5013 5356 5.221945 TGGATAAACATACCAGTGAACACCA 60.222 40.000 1.11 0.00 0.00 4.17
5016 5359 5.885352 CCATGGATAAACATACCAGTGAACA 59.115 40.000 5.56 0.00 37.12 3.18
5019 5362 5.428457 ACTCCATGGATAAACATACCAGTGA 59.572 40.000 16.63 0.00 37.12 3.41
5038 5381 4.253685 GCTAAGCAAGTTCATGTACTCCA 58.746 43.478 5.37 0.00 0.00 3.86
5040 5383 4.174009 TCGCTAAGCAAGTTCATGTACTC 58.826 43.478 5.37 0.00 0.00 2.59
5056 5406 9.919348 GTTTTTGTATAAATCGGTTATCGCTAA 57.081 29.630 0.00 0.00 39.05 3.09
5057 5407 9.316730 AGTTTTTGTATAAATCGGTTATCGCTA 57.683 29.630 0.00 0.00 39.05 4.26
5092 5442 4.074970 AGGCTTAAGTGACCAGTTTCATG 58.925 43.478 4.02 0.00 0.00 3.07
5099 5449 3.438087 CACATCAAGGCTTAAGTGACCAG 59.562 47.826 16.33 2.10 0.00 4.00
5100 5450 3.411446 CACATCAAGGCTTAAGTGACCA 58.589 45.455 16.33 0.00 0.00 4.02
5101 5451 2.749621 CCACATCAAGGCTTAAGTGACC 59.250 50.000 20.62 0.00 0.00 4.02
5112 5463 5.964958 ATCAAACTGTTACCACATCAAGG 57.035 39.130 0.00 0.00 30.39 3.61
5120 5471 7.339721 TCAAGGTTTTGTATCAAACTGTTACCA 59.660 33.333 12.43 0.00 35.73 3.25
5128 5479 6.583806 CAGCTGATCAAGGTTTTGTATCAAAC 59.416 38.462 8.42 0.00 34.01 2.93
5142 5493 1.218763 CGATCTGGCAGCTGATCAAG 58.781 55.000 20.43 8.43 39.06 3.02
5165 5516 1.167851 CGCCACTTTGATGACATGGT 58.832 50.000 0.00 0.00 32.71 3.55
5209 5560 3.831911 GTGATTCAATCAGGGGGTTTTCA 59.168 43.478 0.00 0.00 40.53 2.69
5245 5597 7.331026 TCATTTCATCTCATCGTTAAGGACTT 58.669 34.615 0.00 0.00 0.00 3.01
5253 5605 7.651808 ACAAGTTTTCATTTCATCTCATCGTT 58.348 30.769 0.00 0.00 0.00 3.85
5254 5606 7.206981 ACAAGTTTTCATTTCATCTCATCGT 57.793 32.000 0.00 0.00 0.00 3.73
5283 5635 2.307496 TCATGGCAAAACAGGACCAT 57.693 45.000 0.00 0.00 43.70 3.55
5286 5638 5.405269 GTGTTATTTCATGGCAAAACAGGAC 59.595 40.000 0.00 0.00 30.02 3.85
5287 5639 5.537188 GTGTTATTTCATGGCAAAACAGGA 58.463 37.500 0.00 0.00 0.00 3.86
5290 5642 4.742167 CACGTGTTATTTCATGGCAAAACA 59.258 37.500 7.58 0.00 0.00 2.83
5311 5663 3.063997 GCAGCCACATTGAGTACATACAC 59.936 47.826 0.00 0.00 0.00 2.90
5320 5829 0.747283 GAGGGAGCAGCCACATTGAG 60.747 60.000 0.00 0.00 38.95 3.02
5326 5835 1.078567 CTCTTGAGGGAGCAGCCAC 60.079 63.158 0.00 0.00 38.95 5.01
5411 5920 9.804547 GTAATGCAAGAATTATTTTCGCAAAAA 57.195 25.926 0.00 0.00 38.66 1.94
5412 5921 9.202273 AGTAATGCAAGAATTATTTTCGCAAAA 57.798 25.926 0.00 0.00 34.41 2.44
5413 5922 8.755696 AGTAATGCAAGAATTATTTTCGCAAA 57.244 26.923 0.00 0.00 0.00 3.68
5414 5923 8.026026 TGAGTAATGCAAGAATTATTTTCGCAA 58.974 29.630 0.00 0.00 0.00 4.85
5415 5924 7.534282 TGAGTAATGCAAGAATTATTTTCGCA 58.466 30.769 0.00 0.00 0.00 5.10
5416 5925 7.969387 TGAGTAATGCAAGAATTATTTTCGC 57.031 32.000 0.00 0.00 0.00 4.70
5423 5932 9.066892 ACTGAACTTTGAGTAATGCAAGAATTA 57.933 29.630 0.00 0.00 0.00 1.40
5424 5933 7.945134 ACTGAACTTTGAGTAATGCAAGAATT 58.055 30.769 0.00 0.00 0.00 2.17
5425 5934 7.516198 ACTGAACTTTGAGTAATGCAAGAAT 57.484 32.000 0.00 0.00 0.00 2.40
5426 5935 6.942532 ACTGAACTTTGAGTAATGCAAGAA 57.057 33.333 0.00 0.00 0.00 2.52
5427 5936 6.942532 AACTGAACTTTGAGTAATGCAAGA 57.057 33.333 0.00 0.00 0.00 3.02
5428 5937 8.128582 TGTAAACTGAACTTTGAGTAATGCAAG 58.871 33.333 0.00 0.00 0.00 4.01
5429 5938 7.990917 TGTAAACTGAACTTTGAGTAATGCAA 58.009 30.769 0.00 0.00 0.00 4.08
5430 5939 7.561021 TGTAAACTGAACTTTGAGTAATGCA 57.439 32.000 0.00 0.00 0.00 3.96
5431 5940 8.507249 AGATGTAAACTGAACTTTGAGTAATGC 58.493 33.333 0.00 0.00 0.00 3.56
5433 5942 8.926710 CGAGATGTAAACTGAACTTTGAGTAAT 58.073 33.333 0.00 0.00 0.00 1.89
5434 5943 7.924412 ACGAGATGTAAACTGAACTTTGAGTAA 59.076 33.333 0.00 0.00 0.00 2.24
5435 5944 7.431249 ACGAGATGTAAACTGAACTTTGAGTA 58.569 34.615 0.00 0.00 0.00 2.59
5436 5945 6.281405 ACGAGATGTAAACTGAACTTTGAGT 58.719 36.000 0.00 0.00 0.00 3.41
5437 5946 6.771188 ACGAGATGTAAACTGAACTTTGAG 57.229 37.500 0.00 0.00 0.00 3.02
5438 5947 6.759356 TGAACGAGATGTAAACTGAACTTTGA 59.241 34.615 0.00 0.00 0.00 2.69
5439 5948 6.943981 TGAACGAGATGTAAACTGAACTTTG 58.056 36.000 0.00 0.00 0.00 2.77
5440 5949 7.065324 TGTTGAACGAGATGTAAACTGAACTTT 59.935 33.333 0.00 0.00 31.68 2.66
5441 5950 6.537301 TGTTGAACGAGATGTAAACTGAACTT 59.463 34.615 0.00 0.00 31.68 2.66
5442 5951 6.046593 TGTTGAACGAGATGTAAACTGAACT 58.953 36.000 0.00 0.00 31.68 3.01
5443 5952 6.281848 TGTTGAACGAGATGTAAACTGAAC 57.718 37.500 0.00 0.00 31.68 3.18
5444 5953 6.912203 TTGTTGAACGAGATGTAAACTGAA 57.088 33.333 0.00 0.00 31.68 3.02
5445 5954 6.929049 AGATTGTTGAACGAGATGTAAACTGA 59.071 34.615 0.00 0.00 31.68 3.41
5446 5955 7.121974 AGATTGTTGAACGAGATGTAAACTG 57.878 36.000 0.00 0.00 31.68 3.16
5447 5956 6.369065 GGAGATTGTTGAACGAGATGTAAACT 59.631 38.462 0.00 0.00 31.68 2.66
5448 5957 6.147164 TGGAGATTGTTGAACGAGATGTAAAC 59.853 38.462 0.00 0.00 0.00 2.01
5449 5958 6.227522 TGGAGATTGTTGAACGAGATGTAAA 58.772 36.000 0.00 0.00 0.00 2.01
5450 5959 5.789521 TGGAGATTGTTGAACGAGATGTAA 58.210 37.500 0.00 0.00 0.00 2.41
5451 5960 5.400066 TGGAGATTGTTGAACGAGATGTA 57.600 39.130 0.00 0.00 0.00 2.29
5452 5961 4.248859 CTGGAGATTGTTGAACGAGATGT 58.751 43.478 0.00 0.00 0.00 3.06
5453 5962 3.620374 CCTGGAGATTGTTGAACGAGATG 59.380 47.826 0.00 0.00 0.00 2.90
5454 5963 3.515502 TCCTGGAGATTGTTGAACGAGAT 59.484 43.478 0.00 0.00 0.00 2.75
5455 5964 2.897326 TCCTGGAGATTGTTGAACGAGA 59.103 45.455 0.00 0.00 0.00 4.04
5456 5965 2.996621 GTCCTGGAGATTGTTGAACGAG 59.003 50.000 0.00 0.00 0.00 4.18
5457 5966 2.289444 GGTCCTGGAGATTGTTGAACGA 60.289 50.000 0.00 0.00 0.00 3.85
5458 5967 2.076863 GGTCCTGGAGATTGTTGAACG 58.923 52.381 0.00 0.00 0.00 3.95
5459 5968 3.425162 AGGTCCTGGAGATTGTTGAAC 57.575 47.619 0.00 0.00 0.00 3.18
5460 5969 4.453480 AAAGGTCCTGGAGATTGTTGAA 57.547 40.909 0.00 0.00 0.00 2.69
5461 5970 4.398319 GAAAAGGTCCTGGAGATTGTTGA 58.602 43.478 0.00 0.00 0.00 3.18
5462 5971 3.507622 GGAAAAGGTCCTGGAGATTGTTG 59.492 47.826 0.00 0.00 43.98 3.33
5463 5972 3.767711 GGAAAAGGTCCTGGAGATTGTT 58.232 45.455 0.00 0.00 43.98 2.83
5464 5973 2.290323 CGGAAAAGGTCCTGGAGATTGT 60.290 50.000 0.00 0.00 45.36 2.71
5465 5974 2.359900 CGGAAAAGGTCCTGGAGATTG 58.640 52.381 0.00 0.00 45.36 2.67
5466 5975 1.282157 CCGGAAAAGGTCCTGGAGATT 59.718 52.381 0.00 0.00 45.36 2.40
5467 5976 0.912486 CCGGAAAAGGTCCTGGAGAT 59.088 55.000 0.00 0.00 45.36 2.75
5468 5977 0.178915 TCCGGAAAAGGTCCTGGAGA 60.179 55.000 0.00 0.00 45.36 3.71
5469 5978 0.036294 GTCCGGAAAAGGTCCTGGAG 60.036 60.000 5.23 0.00 44.57 3.86
5470 5979 1.486145 GGTCCGGAAAAGGTCCTGGA 61.486 60.000 5.23 0.00 45.36 3.86
5471 5980 1.002502 GGTCCGGAAAAGGTCCTGG 60.003 63.158 5.23 0.00 45.36 4.45
5472 5981 0.321653 CTGGTCCGGAAAAGGTCCTG 60.322 60.000 5.23 1.89 45.36 3.86
5473 5982 0.473117 TCTGGTCCGGAAAAGGTCCT 60.473 55.000 5.23 0.00 45.36 3.85
5474 5983 0.036294 CTCTGGTCCGGAAAAGGTCC 60.036 60.000 5.23 1.78 43.90 4.46
5475 5984 0.673956 GCTCTGGTCCGGAAAAGGTC 60.674 60.000 5.23 0.00 0.00 3.85
5476 5985 1.375326 GCTCTGGTCCGGAAAAGGT 59.625 57.895 5.23 0.00 0.00 3.50
5477 5986 1.377333 GGCTCTGGTCCGGAAAAGG 60.377 63.158 5.23 2.41 0.00 3.11
5478 5987 0.902531 TAGGCTCTGGTCCGGAAAAG 59.097 55.000 5.23 7.07 0.00 2.27
5479 5988 0.902531 CTAGGCTCTGGTCCGGAAAA 59.097 55.000 5.23 0.00 0.00 2.29
5480 5989 1.614241 GCTAGGCTCTGGTCCGGAAA 61.614 60.000 5.23 0.00 0.00 3.13
5481 5990 2.058595 GCTAGGCTCTGGTCCGGAA 61.059 63.158 5.23 0.00 0.00 4.30
5482 5991 2.442272 GCTAGGCTCTGGTCCGGA 60.442 66.667 0.00 0.00 0.00 5.14
5483 5992 3.541713 GGCTAGGCTCTGGTCCGG 61.542 72.222 9.46 0.00 0.00 5.14
5484 5993 1.899437 TTTGGCTAGGCTCTGGTCCG 61.899 60.000 18.18 0.00 0.00 4.79
5485 5994 0.393132 GTTTGGCTAGGCTCTGGTCC 60.393 60.000 18.18 0.00 0.00 4.46
5486 5995 0.324943 TGTTTGGCTAGGCTCTGGTC 59.675 55.000 18.18 3.21 0.00 4.02
5487 5996 0.326264 CTGTTTGGCTAGGCTCTGGT 59.674 55.000 18.18 0.00 0.00 4.00
5488 5997 1.028868 GCTGTTTGGCTAGGCTCTGG 61.029 60.000 18.18 5.34 0.00 3.86
5489 5998 0.321919 TGCTGTTTGGCTAGGCTCTG 60.322 55.000 18.18 12.08 0.00 3.35
5490 5999 0.035630 CTGCTGTTTGGCTAGGCTCT 60.036 55.000 18.18 0.00 0.00 4.09
5491 6000 0.322008 ACTGCTGTTTGGCTAGGCTC 60.322 55.000 18.18 8.56 0.00 4.70
5492 6001 0.111253 AACTGCTGTTTGGCTAGGCT 59.889 50.000 18.18 0.00 31.37 4.58
5493 6002 0.961753 AAACTGCTGTTTGGCTAGGC 59.038 50.000 19.47 9.85 43.90 3.93
5501 6010 1.134461 TGCAATGCCAAACTGCTGTTT 60.134 42.857 15.19 15.19 46.20 2.83
5502 6011 0.464870 TGCAATGCCAAACTGCTGTT 59.535 45.000 1.53 2.72 37.00 3.16
5503 6012 0.464870 TTGCAATGCCAAACTGCTGT 59.535 45.000 1.53 0.00 37.00 4.40
5504 6013 0.863144 GTTGCAATGCCAAACTGCTG 59.137 50.000 0.59 0.00 37.00 4.41
5505 6014 0.249996 GGTTGCAATGCCAAACTGCT 60.250 50.000 0.59 0.00 37.00 4.24
5506 6015 0.249996 AGGTTGCAATGCCAAACTGC 60.250 50.000 0.59 0.00 41.01 4.40
5507 6016 2.610232 GGTAGGTTGCAATGCCAAACTG 60.610 50.000 14.90 0.00 42.41 3.16
5508 6017 1.618343 GGTAGGTTGCAATGCCAAACT 59.382 47.619 0.59 7.90 44.46 2.66
5509 6018 1.342819 TGGTAGGTTGCAATGCCAAAC 59.657 47.619 0.59 0.87 32.60 2.93
5510 6019 1.709578 TGGTAGGTTGCAATGCCAAA 58.290 45.000 0.59 0.00 0.00 3.28
5511 6020 1.709578 TTGGTAGGTTGCAATGCCAA 58.290 45.000 15.94 15.94 34.12 4.52
5512 6021 1.709578 TTTGGTAGGTTGCAATGCCA 58.290 45.000 0.59 3.78 0.00 4.92
5513 6022 2.829741 TTTTGGTAGGTTGCAATGCC 57.170 45.000 0.59 0.58 0.00 4.40
5514 6023 4.329801 GCTAATTTTGGTAGGTTGCAATGC 59.670 41.667 0.59 0.00 0.00 3.56
5515 6024 4.869861 GGCTAATTTTGGTAGGTTGCAATG 59.130 41.667 0.59 0.00 0.00 2.82
5516 6025 4.530161 TGGCTAATTTTGGTAGGTTGCAAT 59.470 37.500 0.59 0.00 0.00 3.56
5517 6026 3.898123 TGGCTAATTTTGGTAGGTTGCAA 59.102 39.130 0.00 0.00 0.00 4.08
5518 6027 3.501349 TGGCTAATTTTGGTAGGTTGCA 58.499 40.909 0.00 0.00 0.00 4.08
5519 6028 4.159506 TCATGGCTAATTTTGGTAGGTTGC 59.840 41.667 0.00 0.00 0.00 4.17
5520 6029 5.913137 TCATGGCTAATTTTGGTAGGTTG 57.087 39.130 0.00 0.00 0.00 3.77
5521 6030 6.016555 ACTTCATGGCTAATTTTGGTAGGTT 58.983 36.000 0.00 0.00 0.00 3.50
5522 6031 5.418840 CACTTCATGGCTAATTTTGGTAGGT 59.581 40.000 0.00 0.00 0.00 3.08
5523 6032 5.652014 TCACTTCATGGCTAATTTTGGTAGG 59.348 40.000 0.00 0.00 0.00 3.18
5524 6033 6.375455 AGTCACTTCATGGCTAATTTTGGTAG 59.625 38.462 0.00 0.00 43.28 3.18
5525 6034 6.245408 AGTCACTTCATGGCTAATTTTGGTA 58.755 36.000 0.00 0.00 43.28 3.25
5526 6035 5.079643 AGTCACTTCATGGCTAATTTTGGT 58.920 37.500 0.00 0.00 43.28 3.67
5527 6036 5.649782 AGTCACTTCATGGCTAATTTTGG 57.350 39.130 0.00 0.00 43.28 3.28
5528 6037 6.261118 GCTAGTCACTTCATGGCTAATTTTG 58.739 40.000 0.00 0.00 44.97 2.44
5529 6038 5.358160 GGCTAGTCACTTCATGGCTAATTTT 59.642 40.000 0.00 0.00 44.97 1.82
5530 6039 4.884164 GGCTAGTCACTTCATGGCTAATTT 59.116 41.667 0.00 0.00 44.97 1.82
5531 6040 4.455606 GGCTAGTCACTTCATGGCTAATT 58.544 43.478 0.00 0.00 44.97 1.40
5532 6041 3.181450 GGGCTAGTCACTTCATGGCTAAT 60.181 47.826 0.00 0.00 44.97 1.73
5533 6042 2.170607 GGGCTAGTCACTTCATGGCTAA 59.829 50.000 0.00 0.00 44.97 3.09
5534 6043 1.762957 GGGCTAGTCACTTCATGGCTA 59.237 52.381 0.00 0.00 43.28 3.93
5536 6045 0.543749 AGGGCTAGTCACTTCATGGC 59.456 55.000 0.00 0.00 0.00 4.40
5537 6046 4.696479 AATAGGGCTAGTCACTTCATGG 57.304 45.455 0.00 0.00 0.00 3.66
5538 6047 6.161855 TGTAATAGGGCTAGTCACTTCATG 57.838 41.667 0.00 0.00 0.00 3.07
5539 6048 6.808321 TTGTAATAGGGCTAGTCACTTCAT 57.192 37.500 0.00 0.00 0.00 2.57
5540 6049 6.808321 ATTGTAATAGGGCTAGTCACTTCA 57.192 37.500 0.00 0.00 0.00 3.02
5541 6050 6.706716 GGAATTGTAATAGGGCTAGTCACTTC 59.293 42.308 0.00 0.00 0.00 3.01
5542 6051 6.592870 GGAATTGTAATAGGGCTAGTCACTT 58.407 40.000 0.00 0.00 0.00 3.16
5543 6052 5.221461 CGGAATTGTAATAGGGCTAGTCACT 60.221 44.000 0.00 0.00 0.00 3.41
5544 6053 4.989168 CGGAATTGTAATAGGGCTAGTCAC 59.011 45.833 0.00 0.00 0.00 3.67
5545 6054 4.897076 TCGGAATTGTAATAGGGCTAGTCA 59.103 41.667 0.00 0.00 0.00 3.41
5546 6055 5.228665 GTCGGAATTGTAATAGGGCTAGTC 58.771 45.833 0.00 0.00 0.00 2.59
5547 6056 4.261909 CGTCGGAATTGTAATAGGGCTAGT 60.262 45.833 0.00 0.00 0.00 2.57
5548 6057 4.022589 TCGTCGGAATTGTAATAGGGCTAG 60.023 45.833 0.00 0.00 0.00 3.42
5549 6058 3.890756 TCGTCGGAATTGTAATAGGGCTA 59.109 43.478 0.00 0.00 0.00 3.93
5550 6059 2.696707 TCGTCGGAATTGTAATAGGGCT 59.303 45.455 0.00 0.00 0.00 5.19
5551 6060 3.057734 CTCGTCGGAATTGTAATAGGGC 58.942 50.000 0.00 0.00 0.00 5.19
5552 6061 4.579454 TCTCGTCGGAATTGTAATAGGG 57.421 45.455 0.00 0.00 0.00 3.53
5553 6062 6.213677 TCATTCTCGTCGGAATTGTAATAGG 58.786 40.000 6.30 0.00 34.15 2.57
5554 6063 6.918569 ACTCATTCTCGTCGGAATTGTAATAG 59.081 38.462 6.30 0.00 34.15 1.73
5555 6064 6.802608 ACTCATTCTCGTCGGAATTGTAATA 58.197 36.000 6.30 0.00 34.15 0.98
5556 6065 5.661458 ACTCATTCTCGTCGGAATTGTAAT 58.339 37.500 6.30 0.00 34.15 1.89
5557 6066 5.068234 ACTCATTCTCGTCGGAATTGTAA 57.932 39.130 6.30 0.00 34.15 2.41
5558 6067 4.713824 ACTCATTCTCGTCGGAATTGTA 57.286 40.909 6.30 0.00 34.15 2.41
5559 6068 3.594603 ACTCATTCTCGTCGGAATTGT 57.405 42.857 6.30 6.29 34.15 2.71
5560 6069 5.557136 GCATTACTCATTCTCGTCGGAATTG 60.557 44.000 6.30 5.84 34.15 2.32
5561 6070 4.508124 GCATTACTCATTCTCGTCGGAATT 59.492 41.667 6.30 0.00 34.15 2.17
5562 6071 4.051922 GCATTACTCATTCTCGTCGGAAT 58.948 43.478 0.00 0.00 36.49 3.01
5563 6072 3.119280 TGCATTACTCATTCTCGTCGGAA 60.119 43.478 0.00 0.00 0.00 4.30
5564 6073 2.425668 TGCATTACTCATTCTCGTCGGA 59.574 45.455 0.00 0.00 0.00 4.55
5565 6074 2.809446 TGCATTACTCATTCTCGTCGG 58.191 47.619 0.00 0.00 0.00 4.79
5566 6075 4.105486 TCTTGCATTACTCATTCTCGTCG 58.895 43.478 0.00 0.00 0.00 5.12
5567 6076 6.478344 AGATTCTTGCATTACTCATTCTCGTC 59.522 38.462 0.00 0.00 0.00 4.20
5568 6077 6.344500 AGATTCTTGCATTACTCATTCTCGT 58.656 36.000 0.00 0.00 0.00 4.18
5569 6078 6.700960 AGAGATTCTTGCATTACTCATTCTCG 59.299 38.462 0.00 0.00 33.02 4.04
5570 6079 7.927629 AGAGAGATTCTTGCATTACTCATTCTC 59.072 37.037 0.00 0.00 29.61 2.87
5571 6080 7.794041 AGAGAGATTCTTGCATTACTCATTCT 58.206 34.615 0.00 0.00 29.61 2.40
5572 6081 7.927629 AGAGAGAGATTCTTGCATTACTCATTC 59.072 37.037 0.00 0.00 35.87 2.67
5573 6082 7.794041 AGAGAGAGATTCTTGCATTACTCATT 58.206 34.615 0.00 0.00 35.87 2.57
5574 6083 7.288389 AGAGAGAGAGATTCTTGCATTACTCAT 59.712 37.037 0.00 0.00 35.87 2.90
5575 6084 6.606796 AGAGAGAGAGATTCTTGCATTACTCA 59.393 38.462 0.00 0.00 35.87 3.41
5576 6085 7.013655 AGAGAGAGAGAGATTCTTGCATTACTC 59.986 40.741 0.00 0.00 35.87 2.59
5577 6086 6.835488 AGAGAGAGAGAGATTCTTGCATTACT 59.165 38.462 0.00 0.00 35.87 2.24
5578 6087 7.013655 AGAGAGAGAGAGAGATTCTTGCATTAC 59.986 40.741 0.00 0.00 35.87 1.89
5579 6088 7.062322 AGAGAGAGAGAGAGATTCTTGCATTA 58.938 38.462 0.00 0.00 35.87 1.90
5580 6089 5.895534 AGAGAGAGAGAGAGATTCTTGCATT 59.104 40.000 0.00 0.00 35.87 3.56
5581 6090 5.452255 AGAGAGAGAGAGAGATTCTTGCAT 58.548 41.667 0.00 0.00 35.87 3.96
5582 6091 4.858850 AGAGAGAGAGAGAGATTCTTGCA 58.141 43.478 0.00 0.00 35.87 4.08
5583 6092 5.128919 AGAGAGAGAGAGAGAGATTCTTGC 58.871 45.833 0.00 0.00 35.87 4.01
5584 6093 6.351711 TGAGAGAGAGAGAGAGAGATTCTTG 58.648 44.000 0.00 0.00 35.87 3.02
5585 6094 6.566079 TGAGAGAGAGAGAGAGAGATTCTT 57.434 41.667 0.00 0.00 35.87 2.52
5586 6095 6.760440 ATGAGAGAGAGAGAGAGAGATTCT 57.240 41.667 0.00 0.00 39.43 2.40
5587 6096 7.601886 CAGTATGAGAGAGAGAGAGAGAGATTC 59.398 44.444 0.00 0.00 39.69 2.52
5588 6097 7.071698 ACAGTATGAGAGAGAGAGAGAGAGATT 59.928 40.741 0.00 0.00 39.69 2.40
5589 6098 6.556495 ACAGTATGAGAGAGAGAGAGAGAGAT 59.444 42.308 0.00 0.00 39.69 2.75
5590 6099 5.899547 ACAGTATGAGAGAGAGAGAGAGAGA 59.100 44.000 0.00 0.00 39.69 3.10
5591 6100 6.166984 ACAGTATGAGAGAGAGAGAGAGAG 57.833 45.833 0.00 0.00 39.69 3.20
5592 6101 6.839134 AGTACAGTATGAGAGAGAGAGAGAGA 59.161 42.308 0.00 0.00 39.69 3.10
5593 6102 7.055667 AGTACAGTATGAGAGAGAGAGAGAG 57.944 44.000 0.00 0.00 39.69 3.20
5594 6103 8.721133 ATAGTACAGTATGAGAGAGAGAGAGA 57.279 38.462 0.00 0.00 39.69 3.10
5595 6104 8.585018 TGATAGTACAGTATGAGAGAGAGAGAG 58.415 40.741 0.00 0.00 39.69 3.20
5596 6105 8.485578 TGATAGTACAGTATGAGAGAGAGAGA 57.514 38.462 0.00 0.00 39.69 3.10
5597 6106 9.725019 ATTGATAGTACAGTATGAGAGAGAGAG 57.275 37.037 0.00 0.00 39.69 3.20
5598 6107 9.500785 CATTGATAGTACAGTATGAGAGAGAGA 57.499 37.037 0.00 0.00 39.69 3.10
5599 6108 9.500785 TCATTGATAGTACAGTATGAGAGAGAG 57.499 37.037 0.00 0.00 39.69 3.20
5606 6115 9.799106 TGAGAGATCATTGATAGTACAGTATGA 57.201 33.333 0.00 0.00 39.69 2.15
5607 6116 9.838975 GTGAGAGATCATTGATAGTACAGTATG 57.161 37.037 0.00 0.00 46.00 2.39
5608 6117 9.806448 AGTGAGAGATCATTGATAGTACAGTAT 57.194 33.333 0.00 0.00 0.00 2.12
5609 6118 9.061435 CAGTGAGAGATCATTGATAGTACAGTA 57.939 37.037 0.00 0.00 30.20 2.74
5610 6119 7.559533 ACAGTGAGAGATCATTGATAGTACAGT 59.440 37.037 7.62 0.00 32.63 3.55
5611 6120 7.939782 ACAGTGAGAGATCATTGATAGTACAG 58.060 38.462 7.62 0.00 32.63 2.74
5612 6121 7.888250 ACAGTGAGAGATCATTGATAGTACA 57.112 36.000 7.62 0.00 32.63 2.90
5615 6124 9.814899 CTTTTACAGTGAGAGATCATTGATAGT 57.185 33.333 7.62 0.00 32.63 2.12
5616 6125 8.763356 GCTTTTACAGTGAGAGATCATTGATAG 58.237 37.037 7.62 1.72 32.63 2.08
5617 6126 8.260114 TGCTTTTACAGTGAGAGATCATTGATA 58.740 33.333 7.62 0.00 32.63 2.15
5618 6127 7.108194 TGCTTTTACAGTGAGAGATCATTGAT 58.892 34.615 7.62 0.00 32.63 2.57
5619 6128 6.466812 TGCTTTTACAGTGAGAGATCATTGA 58.533 36.000 7.62 0.00 32.63 2.57
5620 6129 6.732531 TGCTTTTACAGTGAGAGATCATTG 57.267 37.500 0.00 0.00 34.17 2.82
5621 6130 9.624373 AATATGCTTTTACAGTGAGAGATCATT 57.376 29.630 0.00 0.00 0.00 2.57
5622 6131 9.624373 AAATATGCTTTTACAGTGAGAGATCAT 57.376 29.630 0.00 0.00 0.00 2.45
5623 6132 9.453572 AAAATATGCTTTTACAGTGAGAGATCA 57.546 29.630 0.00 0.00 0.00 2.92
5624 6133 9.713740 CAAAATATGCTTTTACAGTGAGAGATC 57.286 33.333 0.00 0.00 0.00 2.75
5625 6134 9.453572 TCAAAATATGCTTTTACAGTGAGAGAT 57.546 29.630 0.00 0.00 0.00 2.75
5626 6135 8.846943 TCAAAATATGCTTTTACAGTGAGAGA 57.153 30.769 0.00 0.00 0.00 3.10
5630 6139 9.979578 ACAAATCAAAATATGCTTTTACAGTGA 57.020 25.926 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.