Multiple sequence alignment - TraesCS6A01G291100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G291100 chr6A 100.000 4561 0 0 1 4561 522606939 522611499 0.000000e+00 8423.0
1 TraesCS6A01G291100 chr6A 95.330 364 17 0 1 364 522540479 522540842 3.060000e-161 579.0
2 TraesCS6A01G291100 chr6A 90.191 367 30 5 1 364 582050686 582050323 1.490000e-129 473.0
3 TraesCS6A01G291100 chr6A 90.164 366 31 4 1 364 39612856 39612494 5.340000e-129 472.0
4 TraesCS6A01G291100 chr6A 89.757 371 27 8 1 364 511699206 511699572 8.940000e-127 464.0
5 TraesCS6A01G291100 chr6D 92.736 3056 141 27 358 3407 381343825 381346805 0.000000e+00 4338.0
6 TraesCS6A01G291100 chr6D 93.141 729 22 5 3357 4080 381346800 381347505 0.000000e+00 1044.0
7 TraesCS6A01G291100 chr6D 88.153 498 36 10 4072 4561 381347527 381348009 5.120000e-159 571.0
8 TraesCS6A01G291100 chr6B 94.638 1865 76 10 1414 3278 569047047 569045207 0.000000e+00 2868.0
9 TraesCS6A01G291100 chr6B 89.316 1198 54 31 3357 4522 569045032 569043877 0.000000e+00 1435.0
10 TraesCS6A01G291100 chr6B 87.615 654 31 17 823 1455 569047669 569047045 0.000000e+00 713.0
11 TraesCS6A01G291100 chr6B 86.752 468 49 6 365 830 569048564 569048108 4.070000e-140 508.0
12 TraesCS6A01G291100 chr6B 98.000 200 1 1 3208 3407 569045223 569045027 1.210000e-90 344.0
13 TraesCS6A01G291100 chr6B 95.000 40 2 0 4522 4561 569043858 569043819 3.810000e-06 63.9
14 TraesCS6A01G291100 chr6B 90.909 44 4 0 3235 3278 569045277 569045234 4.930000e-05 60.2
15 TraesCS6A01G291100 chr5A 91.713 362 25 4 4 364 290524484 290524841 8.810000e-137 497.0
16 TraesCS6A01G291100 chr5A 90.083 363 31 4 1 361 67718509 67718868 2.480000e-127 466.0
17 TraesCS6A01G291100 chr5A 89.646 367 32 5 1 364 526471660 526471297 3.210000e-126 462.0
18 TraesCS6A01G291100 chr2A 89.891 366 34 3 1 364 128212874 128213238 6.910000e-128 468.0
19 TraesCS6A01G291100 chr2A 89.779 362 33 3 4 364 769046502 769046144 1.160000e-125 460.0
20 TraesCS6A01G291100 chr5D 80.198 101 15 5 637 734 490163027 490163125 2.280000e-08 71.3
21 TraesCS6A01G291100 chr1B 95.238 42 2 0 3958 3999 288405111 288405152 2.940000e-07 67.6
22 TraesCS6A01G291100 chr2B 91.489 47 3 1 3954 4000 233272048 233272003 3.810000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G291100 chr6A 522606939 522611499 4560 False 8423.000000 8423 100.000000 1 4561 1 chr6A.!!$F3 4560
1 TraesCS6A01G291100 chr6D 381343825 381348009 4184 False 1984.333333 4338 91.343333 358 4561 3 chr6D.!!$F1 4203
2 TraesCS6A01G291100 chr6B 569043819 569048564 4745 True 856.014286 2868 91.747143 365 4561 7 chr6B.!!$R1 4196


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
645 648 0.036765 TTTCCAGCCGTGCTCGTAAT 60.037 50.0 7.47 0.0 36.40 1.89 F
1050 1517 0.178990 GAGCCCTCTCTCCCTCTCTC 60.179 65.0 0.00 0.0 36.42 3.20 F
1472 1982 0.246910 TTAGGATACACGGCGTTGCA 59.753 50.0 11.19 0.0 41.41 4.08 F
1742 2252 0.298707 CAGTGTCGTACATGCATCGC 59.701 55.0 0.00 0.0 0.00 4.58 F
1752 2262 0.723414 CATGCATCGCACGAGAAACT 59.277 50.0 0.00 0.0 43.04 2.66 F
3243 3753 0.329261 TGCTTATGTTCCTGGCAGCT 59.671 50.0 9.56 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2202 2712 0.692476 AGTGTACCTGCTTGCCATCA 59.308 50.000 0.00 0.00 0.00 3.07 R
2935 3445 0.597637 AGAACACAACTGGCGACTCG 60.598 55.000 0.00 0.00 0.00 4.18 R
3235 3745 0.534412 AGCACTACTGTAGCTGCCAG 59.466 55.000 25.08 12.27 37.20 4.85 R
3236 3746 0.976641 AAGCACTACTGTAGCTGCCA 59.023 50.000 25.08 0.00 38.86 4.92 R
3261 3771 1.269998 GCCGCTACTATAGTCACCAGG 59.730 57.143 9.12 8.31 0.00 4.45 R
4201 4870 0.600782 CAATGCAACCAAGGGCACAC 60.601 55.000 0.00 0.00 43.75 3.82 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.561932 GAAAGGTAAACTAAGTTGCTTCTTTG 57.438 34.615 0.00 1.56 0.00 2.77
26 27 6.635030 AGGTAAACTAAGTTGCTTCTTTGG 57.365 37.500 0.01 0.00 0.00 3.28
27 28 5.009710 AGGTAAACTAAGTTGCTTCTTTGGC 59.990 40.000 0.01 0.00 0.00 4.52
28 29 5.221165 GGTAAACTAAGTTGCTTCTTTGGCA 60.221 40.000 0.00 0.00 37.97 4.92
29 30 5.337578 AAACTAAGTTGCTTCTTTGGCAA 57.662 34.783 0.00 0.00 45.70 4.52
34 35 2.490328 TTGCTTCTTTGGCAAACGAG 57.510 45.000 8.93 10.56 45.05 4.18
35 36 1.388547 TGCTTCTTTGGCAAACGAGT 58.611 45.000 8.93 0.00 36.71 4.18
36 37 1.065401 TGCTTCTTTGGCAAACGAGTG 59.935 47.619 8.93 0.00 36.71 3.51
37 38 1.333619 GCTTCTTTGGCAAACGAGTGA 59.666 47.619 8.93 1.44 0.00 3.41
38 39 2.223479 GCTTCTTTGGCAAACGAGTGAA 60.223 45.455 8.93 9.66 0.00 3.18
39 40 3.733684 GCTTCTTTGGCAAACGAGTGAAA 60.734 43.478 8.93 0.00 0.00 2.69
40 41 3.414549 TCTTTGGCAAACGAGTGAAAC 57.585 42.857 8.93 0.00 0.00 2.78
41 42 2.098443 TCTTTGGCAAACGAGTGAAACC 59.902 45.455 8.93 0.00 37.80 3.27
42 43 1.464734 TTGGCAAACGAGTGAAACCA 58.535 45.000 0.00 0.00 37.80 3.67
43 44 1.464734 TGGCAAACGAGTGAAACCAA 58.535 45.000 0.00 0.00 37.80 3.67
44 45 1.819288 TGGCAAACGAGTGAAACCAAA 59.181 42.857 0.00 0.00 37.80 3.28
45 46 2.159310 TGGCAAACGAGTGAAACCAAAG 60.159 45.455 0.00 0.00 37.80 2.77
46 47 2.098443 GGCAAACGAGTGAAACCAAAGA 59.902 45.455 0.00 0.00 37.80 2.52
47 48 3.428316 GGCAAACGAGTGAAACCAAAGAA 60.428 43.478 0.00 0.00 37.80 2.52
48 49 3.546271 GCAAACGAGTGAAACCAAAGAAC 59.454 43.478 0.00 0.00 37.80 3.01
49 50 4.102649 CAAACGAGTGAAACCAAAGAACC 58.897 43.478 0.00 0.00 37.80 3.62
50 51 3.277142 ACGAGTGAAACCAAAGAACCT 57.723 42.857 0.00 0.00 37.80 3.50
51 52 3.617284 ACGAGTGAAACCAAAGAACCTT 58.383 40.909 0.00 0.00 37.80 3.50
52 53 3.377172 ACGAGTGAAACCAAAGAACCTTG 59.623 43.478 0.00 0.00 37.80 3.61
53 54 3.625764 CGAGTGAAACCAAAGAACCTTGA 59.374 43.478 0.00 0.00 37.80 3.02
54 55 4.260784 CGAGTGAAACCAAAGAACCTTGAG 60.261 45.833 0.00 0.00 37.80 3.02
55 56 4.855340 AGTGAAACCAAAGAACCTTGAGA 58.145 39.130 0.00 0.00 37.80 3.27
56 57 4.884164 AGTGAAACCAAAGAACCTTGAGAG 59.116 41.667 0.00 0.00 37.80 3.20
57 58 6.152611 AGTGAAACCAAAGAACCTTGAGAGG 61.153 44.000 0.00 0.00 43.91 3.69
73 74 8.579682 CCTTGAGAGGTTAAACAAATTGAAAG 57.420 34.615 0.00 0.00 38.32 2.62
74 75 8.413229 CCTTGAGAGGTTAAACAAATTGAAAGA 58.587 33.333 0.00 0.00 38.32 2.52
75 76 9.801873 CTTGAGAGGTTAAACAAATTGAAAGAA 57.198 29.630 0.00 0.00 0.00 2.52
77 78 9.801873 TGAGAGGTTAAACAAATTGAAAGAAAG 57.198 29.630 0.00 0.00 0.00 2.62
106 107 9.965748 AAAACACAATAAAGTTGAACGAATTTG 57.034 25.926 0.00 0.00 0.00 2.32
107 108 8.918961 AACACAATAAAGTTGAACGAATTTGA 57.081 26.923 0.00 0.00 0.00 2.69
108 109 8.560576 ACACAATAAAGTTGAACGAATTTGAG 57.439 30.769 0.00 5.89 0.00 3.02
109 110 8.402472 ACACAATAAAGTTGAACGAATTTGAGA 58.598 29.630 0.00 0.00 0.00 3.27
110 111 8.895845 CACAATAAAGTTGAACGAATTTGAGAG 58.104 33.333 0.00 0.00 0.00 3.20
111 112 7.591426 ACAATAAAGTTGAACGAATTTGAGAGC 59.409 33.333 0.00 0.00 0.00 4.09
112 113 5.499139 AAAGTTGAACGAATTTGAGAGCA 57.501 34.783 0.00 0.00 0.00 4.26
113 114 4.474226 AGTTGAACGAATTTGAGAGCAC 57.526 40.909 0.00 0.00 0.00 4.40
114 115 4.130118 AGTTGAACGAATTTGAGAGCACT 58.870 39.130 0.00 0.00 0.00 4.40
115 116 4.212214 AGTTGAACGAATTTGAGAGCACTC 59.788 41.667 3.95 3.95 42.88 3.51
116 117 3.067106 TGAACGAATTTGAGAGCACTCC 58.933 45.455 8.77 0.00 41.99 3.85
117 118 1.714794 ACGAATTTGAGAGCACTCCG 58.285 50.000 8.77 6.92 41.99 4.63
118 119 1.002366 CGAATTTGAGAGCACTCCGG 58.998 55.000 8.77 0.00 41.99 5.14
119 120 1.673033 CGAATTTGAGAGCACTCCGGT 60.673 52.381 8.77 0.00 41.99 5.28
120 121 2.416836 CGAATTTGAGAGCACTCCGGTA 60.417 50.000 8.77 0.00 41.99 4.02
121 122 2.969628 ATTTGAGAGCACTCCGGTAG 57.030 50.000 8.77 0.00 41.99 3.18
122 123 1.919240 TTTGAGAGCACTCCGGTAGA 58.081 50.000 8.77 0.00 41.99 2.59
123 124 1.919240 TTGAGAGCACTCCGGTAGAA 58.081 50.000 8.77 0.00 41.99 2.10
124 125 1.919240 TGAGAGCACTCCGGTAGAAA 58.081 50.000 8.77 0.00 41.99 2.52
125 126 2.244695 TGAGAGCACTCCGGTAGAAAA 58.755 47.619 8.77 0.00 41.99 2.29
126 127 2.029290 TGAGAGCACTCCGGTAGAAAAC 60.029 50.000 8.77 0.00 41.99 2.43
127 128 1.968493 AGAGCACTCCGGTAGAAAACA 59.032 47.619 0.00 0.00 0.00 2.83
128 129 2.028930 AGAGCACTCCGGTAGAAAACAG 60.029 50.000 0.00 0.00 0.00 3.16
129 130 1.968493 AGCACTCCGGTAGAAAACAGA 59.032 47.619 0.00 0.00 0.00 3.41
130 131 2.367567 AGCACTCCGGTAGAAAACAGAA 59.632 45.455 0.00 0.00 0.00 3.02
131 132 3.135994 GCACTCCGGTAGAAAACAGAAA 58.864 45.455 0.00 0.00 0.00 2.52
132 133 3.562557 GCACTCCGGTAGAAAACAGAAAA 59.437 43.478 0.00 0.00 0.00 2.29
133 134 4.035909 GCACTCCGGTAGAAAACAGAAAAA 59.964 41.667 0.00 0.00 0.00 1.94
155 156 8.762481 AAAAAGGAACATTACTAGAACCTTGT 57.238 30.769 0.00 0.00 36.57 3.16
156 157 9.856162 AAAAAGGAACATTACTAGAACCTTGTA 57.144 29.630 0.00 0.00 36.57 2.41
157 158 9.503399 AAAAGGAACATTACTAGAACCTTGTAG 57.497 33.333 0.00 0.00 36.57 2.74
158 159 7.184067 AGGAACATTACTAGAACCTTGTAGG 57.816 40.000 0.00 0.00 42.49 3.18
174 175 7.979444 CCTTGTAGGTTGAAAGACATAAGAA 57.021 36.000 0.00 0.00 0.00 2.52
175 176 8.391075 CCTTGTAGGTTGAAAGACATAAGAAA 57.609 34.615 0.00 0.00 0.00 2.52
176 177 8.846211 CCTTGTAGGTTGAAAGACATAAGAAAA 58.154 33.333 0.00 0.00 0.00 2.29
180 181 9.626045 GTAGGTTGAAAGACATAAGAAAAATGG 57.374 33.333 0.00 0.00 0.00 3.16
181 182 7.154656 AGGTTGAAAGACATAAGAAAAATGGC 58.845 34.615 0.00 0.00 32.10 4.40
182 183 7.015584 AGGTTGAAAGACATAAGAAAAATGGCT 59.984 33.333 0.00 0.00 44.81 4.75
183 184 7.116805 GGTTGAAAGACATAAGAAAAATGGCTG 59.883 37.037 0.00 0.00 42.00 4.85
184 185 6.158598 TGAAAGACATAAGAAAAATGGCTGC 58.841 36.000 0.00 0.00 42.00 5.25
185 186 5.726980 AAGACATAAGAAAAATGGCTGCA 57.273 34.783 0.50 0.00 42.00 4.41
186 187 5.726980 AGACATAAGAAAAATGGCTGCAA 57.273 34.783 0.50 0.00 41.27 4.08
187 188 6.290294 AGACATAAGAAAAATGGCTGCAAT 57.710 33.333 0.50 0.00 41.27 3.56
188 189 6.103997 AGACATAAGAAAAATGGCTGCAATG 58.896 36.000 0.50 0.00 41.27 2.82
189 190 5.180271 ACATAAGAAAAATGGCTGCAATGG 58.820 37.500 0.50 0.00 0.00 3.16
190 191 5.046448 ACATAAGAAAAATGGCTGCAATGGA 60.046 36.000 0.50 0.00 0.00 3.41
191 192 3.323751 AGAAAAATGGCTGCAATGGAC 57.676 42.857 0.50 0.00 0.00 4.02
192 193 2.633967 AGAAAAATGGCTGCAATGGACA 59.366 40.909 0.50 0.00 0.00 4.02
193 194 3.071312 AGAAAAATGGCTGCAATGGACAA 59.929 39.130 0.50 0.00 0.00 3.18
194 195 2.754946 AAATGGCTGCAATGGACAAG 57.245 45.000 0.50 0.00 0.00 3.16
195 196 1.927487 AATGGCTGCAATGGACAAGA 58.073 45.000 0.50 0.00 0.00 3.02
196 197 1.927487 ATGGCTGCAATGGACAAGAA 58.073 45.000 0.50 0.00 0.00 2.52
197 198 1.250328 TGGCTGCAATGGACAAGAAG 58.750 50.000 0.50 0.00 0.00 2.85
198 199 1.251251 GGCTGCAATGGACAAGAAGT 58.749 50.000 0.50 0.00 0.00 3.01
199 200 2.224744 TGGCTGCAATGGACAAGAAGTA 60.225 45.455 0.50 0.00 0.00 2.24
200 201 3.019564 GGCTGCAATGGACAAGAAGTAT 58.980 45.455 0.50 0.00 0.00 2.12
201 202 4.199310 GGCTGCAATGGACAAGAAGTATA 58.801 43.478 0.50 0.00 0.00 1.47
202 203 4.823989 GGCTGCAATGGACAAGAAGTATAT 59.176 41.667 0.50 0.00 0.00 0.86
203 204 5.278169 GGCTGCAATGGACAAGAAGTATATG 60.278 44.000 0.50 0.00 0.00 1.78
204 205 5.755813 CTGCAATGGACAAGAAGTATATGC 58.244 41.667 0.00 0.00 0.00 3.14
205 206 5.192176 TGCAATGGACAAGAAGTATATGCA 58.808 37.500 0.00 0.00 0.00 3.96
206 207 5.651576 TGCAATGGACAAGAAGTATATGCAA 59.348 36.000 0.00 0.00 0.00 4.08
207 208 6.183360 TGCAATGGACAAGAAGTATATGCAAG 60.183 38.462 0.00 0.00 0.00 4.01
208 209 6.204359 CAATGGACAAGAAGTATATGCAAGC 58.796 40.000 0.00 0.00 0.00 4.01
209 210 4.842574 TGGACAAGAAGTATATGCAAGCA 58.157 39.130 0.00 0.00 0.00 3.91
210 211 4.635765 TGGACAAGAAGTATATGCAAGCAC 59.364 41.667 0.00 0.00 0.00 4.40
211 212 4.878397 GGACAAGAAGTATATGCAAGCACT 59.122 41.667 0.00 0.00 0.00 4.40
212 213 5.007136 GGACAAGAAGTATATGCAAGCACTC 59.993 44.000 0.00 0.00 0.00 3.51
213 214 5.738909 ACAAGAAGTATATGCAAGCACTCT 58.261 37.500 0.00 0.00 0.00 3.24
214 215 5.583854 ACAAGAAGTATATGCAAGCACTCTG 59.416 40.000 0.00 0.00 0.00 3.35
215 216 4.701765 AGAAGTATATGCAAGCACTCTGG 58.298 43.478 0.00 0.00 0.00 3.86
216 217 4.163078 AGAAGTATATGCAAGCACTCTGGT 59.837 41.667 0.00 0.00 0.00 4.00
217 218 5.363868 AGAAGTATATGCAAGCACTCTGGTA 59.636 40.000 0.00 0.00 0.00 3.25
218 219 5.207110 AGTATATGCAAGCACTCTGGTAG 57.793 43.478 0.00 0.00 0.00 3.18
219 220 4.895889 AGTATATGCAAGCACTCTGGTAGA 59.104 41.667 0.00 0.00 0.00 2.59
220 221 4.760530 ATATGCAAGCACTCTGGTAGAA 57.239 40.909 0.00 0.00 0.00 2.10
221 222 2.928801 TGCAAGCACTCTGGTAGAAA 57.071 45.000 0.00 0.00 0.00 2.52
222 223 2.494059 TGCAAGCACTCTGGTAGAAAC 58.506 47.619 0.00 0.00 0.00 2.78
223 224 1.461127 GCAAGCACTCTGGTAGAAACG 59.539 52.381 0.00 0.00 0.00 3.60
224 225 2.866460 GCAAGCACTCTGGTAGAAACGA 60.866 50.000 0.00 0.00 0.00 3.85
225 226 2.989840 CAAGCACTCTGGTAGAAACGAG 59.010 50.000 0.00 0.00 33.05 4.18
226 227 2.515854 AGCACTCTGGTAGAAACGAGA 58.484 47.619 0.00 0.00 38.04 4.04
227 228 3.093057 AGCACTCTGGTAGAAACGAGAT 58.907 45.455 0.00 0.00 39.41 2.75
228 229 3.119316 AGCACTCTGGTAGAAACGAGATG 60.119 47.826 0.00 0.00 39.41 2.90
229 230 3.367498 GCACTCTGGTAGAAACGAGATGT 60.367 47.826 0.00 0.00 39.41 3.06
230 231 4.142447 GCACTCTGGTAGAAACGAGATGTA 60.142 45.833 0.00 0.00 39.41 2.29
231 232 5.333513 CACTCTGGTAGAAACGAGATGTAC 58.666 45.833 0.00 0.00 39.41 2.90
232 233 5.008331 ACTCTGGTAGAAACGAGATGTACA 58.992 41.667 0.00 0.00 39.41 2.90
233 234 5.475909 ACTCTGGTAGAAACGAGATGTACAA 59.524 40.000 0.00 0.00 39.41 2.41
234 235 6.015688 ACTCTGGTAGAAACGAGATGTACAAA 60.016 38.462 0.00 0.00 39.41 2.83
235 236 6.387465 TCTGGTAGAAACGAGATGTACAAAG 58.613 40.000 0.00 0.00 35.76 2.77
236 237 6.208007 TCTGGTAGAAACGAGATGTACAAAGA 59.792 38.462 0.00 0.00 35.76 2.52
237 238 6.751157 TGGTAGAAACGAGATGTACAAAGAA 58.249 36.000 0.00 0.00 0.00 2.52
238 239 6.643770 TGGTAGAAACGAGATGTACAAAGAAC 59.356 38.462 0.00 0.00 0.00 3.01
239 240 5.824243 AGAAACGAGATGTACAAAGAACG 57.176 39.130 0.00 4.82 0.00 3.95
240 241 5.526115 AGAAACGAGATGTACAAAGAACGA 58.474 37.500 0.00 0.00 0.00 3.85
241 242 6.157211 AGAAACGAGATGTACAAAGAACGAT 58.843 36.000 0.00 0.00 0.00 3.73
242 243 7.310664 AGAAACGAGATGTACAAAGAACGATA 58.689 34.615 0.00 0.00 0.00 2.92
243 244 7.811236 AGAAACGAGATGTACAAAGAACGATAA 59.189 33.333 0.00 0.00 0.00 1.75
244 245 7.507672 AACGAGATGTACAAAGAACGATAAG 57.492 36.000 0.00 0.00 0.00 1.73
245 246 6.034591 ACGAGATGTACAAAGAACGATAAGG 58.965 40.000 0.00 0.00 0.00 2.69
246 247 6.127814 ACGAGATGTACAAAGAACGATAAGGA 60.128 38.462 0.00 0.00 0.00 3.36
247 248 6.918569 CGAGATGTACAAAGAACGATAAGGAT 59.081 38.462 0.00 0.00 0.00 3.24
248 249 7.113684 CGAGATGTACAAAGAACGATAAGGATC 59.886 40.741 0.00 0.00 0.00 3.36
249 250 7.782049 AGATGTACAAAGAACGATAAGGATCA 58.218 34.615 0.00 0.00 31.78 2.92
250 251 8.258007 AGATGTACAAAGAACGATAAGGATCAA 58.742 33.333 0.00 0.00 31.78 2.57
251 252 8.964476 ATGTACAAAGAACGATAAGGATCAAT 57.036 30.769 0.00 0.00 31.78 2.57
252 253 8.786826 TGTACAAAGAACGATAAGGATCAATT 57.213 30.769 0.00 0.00 31.78 2.32
253 254 9.878667 TGTACAAAGAACGATAAGGATCAATTA 57.121 29.630 0.00 0.00 31.78 1.40
256 257 9.613428 ACAAAGAACGATAAGGATCAATTATGA 57.387 29.630 7.05 0.00 40.57 2.15
257 258 9.869844 CAAAGAACGATAAGGATCAATTATGAC 57.130 33.333 7.05 0.00 38.69 3.06
258 259 9.613428 AAAGAACGATAAGGATCAATTATGACA 57.387 29.630 7.05 0.00 38.69 3.58
259 260 9.613428 AAGAACGATAAGGATCAATTATGACAA 57.387 29.630 7.05 0.00 38.69 3.18
260 261 9.046296 AGAACGATAAGGATCAATTATGACAAC 57.954 33.333 7.05 0.00 38.69 3.32
261 262 8.731275 AACGATAAGGATCAATTATGACAACA 57.269 30.769 7.05 0.00 38.69 3.33
262 263 8.142994 ACGATAAGGATCAATTATGACAACAC 57.857 34.615 7.05 0.00 38.69 3.32
263 264 7.987458 ACGATAAGGATCAATTATGACAACACT 59.013 33.333 7.05 0.00 38.69 3.55
264 265 8.491152 CGATAAGGATCAATTATGACAACACTC 58.509 37.037 7.05 0.00 38.69 3.51
265 266 8.682936 ATAAGGATCAATTATGACAACACTCC 57.317 34.615 0.00 0.00 38.69 3.85
266 267 5.118990 AGGATCAATTATGACAACACTCCG 58.881 41.667 0.00 0.00 38.69 4.63
267 268 4.273480 GGATCAATTATGACAACACTCCGG 59.727 45.833 0.00 0.00 38.69 5.14
268 269 4.280436 TCAATTATGACAACACTCCGGT 57.720 40.909 0.00 0.00 0.00 5.28
269 270 4.647611 TCAATTATGACAACACTCCGGTT 58.352 39.130 0.00 0.00 0.00 4.44
276 277 2.704725 CAACACTCCGGTTGGAAATG 57.295 50.000 0.00 0.00 45.87 2.32
277 278 1.269448 CAACACTCCGGTTGGAAATGG 59.731 52.381 0.00 0.00 45.87 3.16
278 279 0.768622 ACACTCCGGTTGGAAATGGA 59.231 50.000 0.00 0.00 45.87 3.41
280 281 3.175133 CTCCGGTTGGAAATGGAGG 57.825 57.895 0.00 0.00 45.87 4.30
281 282 0.394352 CTCCGGTTGGAAATGGAGGG 60.394 60.000 0.00 0.00 45.87 4.30
282 283 2.052104 CCGGTTGGAAATGGAGGGC 61.052 63.158 0.00 0.00 37.49 5.19
283 284 1.304052 CGGTTGGAAATGGAGGGCA 60.304 57.895 0.00 0.00 0.00 5.36
284 285 1.315257 CGGTTGGAAATGGAGGGCAG 61.315 60.000 0.00 0.00 0.00 4.85
285 286 0.251787 GGTTGGAAATGGAGGGCAGT 60.252 55.000 0.00 0.00 0.00 4.40
286 287 1.005450 GGTTGGAAATGGAGGGCAGTA 59.995 52.381 0.00 0.00 0.00 2.74
287 288 2.556559 GGTTGGAAATGGAGGGCAGTAA 60.557 50.000 0.00 0.00 0.00 2.24
288 289 3.365472 GTTGGAAATGGAGGGCAGTAAT 58.635 45.455 0.00 0.00 0.00 1.89
289 290 4.532834 GTTGGAAATGGAGGGCAGTAATA 58.467 43.478 0.00 0.00 0.00 0.98
290 291 5.140454 GTTGGAAATGGAGGGCAGTAATAT 58.860 41.667 0.00 0.00 0.00 1.28
291 292 4.728772 TGGAAATGGAGGGCAGTAATATG 58.271 43.478 0.00 0.00 0.00 1.78
292 293 4.415179 TGGAAATGGAGGGCAGTAATATGA 59.585 41.667 0.00 0.00 0.00 2.15
293 294 5.103728 TGGAAATGGAGGGCAGTAATATGAA 60.104 40.000 0.00 0.00 0.00 2.57
294 295 5.241728 GGAAATGGAGGGCAGTAATATGAAC 59.758 44.000 0.00 0.00 0.00 3.18
295 296 5.653255 AATGGAGGGCAGTAATATGAACT 57.347 39.130 0.00 0.00 0.00 3.01
296 297 5.653255 ATGGAGGGCAGTAATATGAACTT 57.347 39.130 0.00 0.00 0.00 2.66
297 298 4.780815 TGGAGGGCAGTAATATGAACTTG 58.219 43.478 0.00 0.00 0.00 3.16
298 299 4.473196 TGGAGGGCAGTAATATGAACTTGA 59.527 41.667 0.00 0.00 0.00 3.02
299 300 4.816925 GGAGGGCAGTAATATGAACTTGAC 59.183 45.833 0.00 0.00 0.00 3.18
300 301 5.428253 GAGGGCAGTAATATGAACTTGACA 58.572 41.667 0.00 0.00 0.00 3.58
301 302 5.815581 AGGGCAGTAATATGAACTTGACAA 58.184 37.500 0.00 0.00 0.00 3.18
302 303 6.245408 AGGGCAGTAATATGAACTTGACAAA 58.755 36.000 0.00 0.00 0.00 2.83
303 304 6.719370 AGGGCAGTAATATGAACTTGACAAAA 59.281 34.615 0.00 0.00 0.00 2.44
304 305 7.232534 AGGGCAGTAATATGAACTTGACAAAAA 59.767 33.333 0.00 0.00 0.00 1.94
327 328 3.944476 AGGCACTTGGATGTGAGTC 57.056 52.632 0.00 0.00 40.12 3.36
328 329 0.326264 AGGCACTTGGATGTGAGTCC 59.674 55.000 0.00 0.00 40.12 3.85
329 330 1.021390 GGCACTTGGATGTGAGTCCG 61.021 60.000 0.00 0.00 41.35 4.79
330 331 1.021390 GCACTTGGATGTGAGTCCGG 61.021 60.000 0.00 0.00 41.35 5.14
331 332 0.321671 CACTTGGATGTGAGTCCGGT 59.678 55.000 0.00 0.00 41.35 5.28
332 333 1.056660 ACTTGGATGTGAGTCCGGTT 58.943 50.000 0.00 0.00 41.35 4.44
333 334 2.028476 CACTTGGATGTGAGTCCGGTTA 60.028 50.000 0.00 0.00 41.35 2.85
334 335 2.233922 ACTTGGATGTGAGTCCGGTTAG 59.766 50.000 0.00 0.00 41.35 2.34
335 336 2.225382 TGGATGTGAGTCCGGTTAGA 57.775 50.000 0.00 0.00 41.35 2.10
336 337 2.531771 TGGATGTGAGTCCGGTTAGAA 58.468 47.619 0.00 0.00 41.35 2.10
337 338 2.496070 TGGATGTGAGTCCGGTTAGAAG 59.504 50.000 0.00 0.00 41.35 2.85
338 339 2.758979 GGATGTGAGTCCGGTTAGAAGA 59.241 50.000 0.00 0.00 0.00 2.87
339 340 3.181485 GGATGTGAGTCCGGTTAGAAGAG 60.181 52.174 0.00 0.00 0.00 2.85
340 341 2.168496 TGTGAGTCCGGTTAGAAGAGG 58.832 52.381 0.00 0.00 0.00 3.69
341 342 2.224942 TGTGAGTCCGGTTAGAAGAGGA 60.225 50.000 0.00 0.00 0.00 3.71
342 343 2.824341 GTGAGTCCGGTTAGAAGAGGAA 59.176 50.000 0.00 0.00 34.17 3.36
343 344 3.447944 GTGAGTCCGGTTAGAAGAGGAAT 59.552 47.826 0.00 0.00 34.17 3.01
344 345 3.447586 TGAGTCCGGTTAGAAGAGGAATG 59.552 47.826 0.00 0.00 34.17 2.67
345 346 3.700038 GAGTCCGGTTAGAAGAGGAATGA 59.300 47.826 0.00 0.00 34.17 2.57
346 347 4.290942 AGTCCGGTTAGAAGAGGAATGAT 58.709 43.478 0.00 0.00 34.17 2.45
347 348 5.455872 AGTCCGGTTAGAAGAGGAATGATA 58.544 41.667 0.00 0.00 34.17 2.15
348 349 5.536916 AGTCCGGTTAGAAGAGGAATGATAG 59.463 44.000 0.00 0.00 34.17 2.08
349 350 4.281182 TCCGGTTAGAAGAGGAATGATAGC 59.719 45.833 0.00 0.00 0.00 2.97
350 351 4.561105 CGGTTAGAAGAGGAATGATAGCC 58.439 47.826 0.00 0.00 0.00 3.93
351 352 4.039245 CGGTTAGAAGAGGAATGATAGCCA 59.961 45.833 0.00 0.00 0.00 4.75
352 353 5.301555 GGTTAGAAGAGGAATGATAGCCAC 58.698 45.833 0.00 0.00 0.00 5.01
353 354 5.163301 GGTTAGAAGAGGAATGATAGCCACA 60.163 44.000 0.00 0.00 0.00 4.17
354 355 6.349300 GTTAGAAGAGGAATGATAGCCACAA 58.651 40.000 0.00 0.00 0.00 3.33
355 356 4.775236 AGAAGAGGAATGATAGCCACAAC 58.225 43.478 0.00 0.00 0.00 3.32
356 357 4.225942 AGAAGAGGAATGATAGCCACAACA 59.774 41.667 0.00 0.00 0.00 3.33
362 363 0.249120 TGATAGCCACAACACTCCGG 59.751 55.000 0.00 0.00 0.00 5.14
363 364 0.249398 GATAGCCACAACACTCCGGT 59.751 55.000 0.00 0.00 0.00 5.28
374 375 4.803426 CTCCGGTGCGCTCCTCAC 62.803 72.222 24.75 6.60 0.00 3.51
384 385 2.266055 CTCCTCACTTGCCCCGAC 59.734 66.667 0.00 0.00 0.00 4.79
432 433 6.978343 TGTAGTAATCAATCAAAAGGGTCG 57.022 37.500 0.00 0.00 0.00 4.79
433 434 6.469410 TGTAGTAATCAATCAAAAGGGTCGT 58.531 36.000 0.00 0.00 0.00 4.34
439 440 4.204012 TCAATCAAAAGGGTCGTTGAAGT 58.796 39.130 0.00 0.00 37.31 3.01
448 449 0.318784 GTCGTTGAAGTGGCGAGAGT 60.319 55.000 0.00 0.00 35.22 3.24
453 454 2.154854 TGAAGTGGCGAGAGTGAAAG 57.845 50.000 0.00 0.00 0.00 2.62
471 472 7.967908 AGTGAAAGAGAGATTGAGGTAAGAAA 58.032 34.615 0.00 0.00 0.00 2.52
472 473 8.601546 AGTGAAAGAGAGATTGAGGTAAGAAAT 58.398 33.333 0.00 0.00 0.00 2.17
473 474 9.877178 GTGAAAGAGAGATTGAGGTAAGAAATA 57.123 33.333 0.00 0.00 0.00 1.40
502 503 9.860898 AAAAATAGAGTATGCTTTTCATGAACC 57.139 29.630 7.89 0.32 36.63 3.62
506 507 3.763897 AGTATGCTTTTCATGAACCCCAC 59.236 43.478 7.89 2.17 36.63 4.61
507 508 2.380064 TGCTTTTCATGAACCCCACT 57.620 45.000 7.89 0.00 0.00 4.00
515 516 3.605634 TCATGAACCCCACTACAAATCG 58.394 45.455 0.00 0.00 0.00 3.34
523 524 2.610976 CCCACTACAAATCGGACGTCAA 60.611 50.000 18.91 4.99 0.00 3.18
553 554 9.454859 TTTAACCATGGAAAATCAAACTTTTGT 57.545 25.926 21.47 0.00 39.18 2.83
593 595 4.630069 GCCGAGAATAGCAAGTTTAGTTGA 59.370 41.667 1.56 0.00 0.00 3.18
600 602 4.292977 AGCAAGTTTAGTTGACAAGCAC 57.707 40.909 1.56 0.00 0.00 4.40
602 604 3.617669 CAAGTTTAGTTGACAAGCACGG 58.382 45.455 0.00 0.00 0.00 4.94
645 648 0.036765 TTTCCAGCCGTGCTCGTAAT 60.037 50.000 7.47 0.00 36.40 1.89
670 673 0.904649 TCTGTCATCCTCACGCCAAT 59.095 50.000 0.00 0.00 0.00 3.16
732 736 9.841295 AAAAATATCATGCCAAATTTCTAGCAT 57.159 25.926 12.05 12.05 46.50 3.79
733 737 9.841295 AAAATATCATGCCAAATTTCTAGCATT 57.159 25.926 14.25 6.85 43.17 3.56
735 739 9.918630 AATATCATGCCAAATTTCTAGCATTAC 57.081 29.630 14.25 0.00 43.17 1.89
736 740 7.592885 ATCATGCCAAATTTCTAGCATTACT 57.407 32.000 14.25 3.59 43.17 2.24
737 741 7.031226 TCATGCCAAATTTCTAGCATTACTC 57.969 36.000 14.25 0.00 43.17 2.59
738 742 6.830324 TCATGCCAAATTTCTAGCATTACTCT 59.170 34.615 14.25 0.00 43.17 3.24
739 743 7.340232 TCATGCCAAATTTCTAGCATTACTCTT 59.660 33.333 14.25 0.00 43.17 2.85
740 744 7.466746 TGCCAAATTTCTAGCATTACTCTTT 57.533 32.000 3.54 0.00 0.00 2.52
741 745 7.895759 TGCCAAATTTCTAGCATTACTCTTTT 58.104 30.769 3.54 0.00 0.00 2.27
773 777 2.691732 ATGGGCCCCATGTTGAGG 59.308 61.111 22.27 0.00 43.39 3.86
778 782 2.751436 CCCCATGTTGAGGTGGCG 60.751 66.667 0.00 0.00 34.08 5.69
786 790 1.903860 TGTTGAGGTGGCGGTATAAGT 59.096 47.619 0.00 0.00 0.00 2.24
787 791 2.093869 TGTTGAGGTGGCGGTATAAGTC 60.094 50.000 0.00 0.00 0.00 3.01
838 1289 1.804326 CGGTGTAAACCGCCTCTCG 60.804 63.158 12.49 0.00 46.76 4.04
923 1390 1.995626 GGCCCAGCCTAGAGTTCCA 60.996 63.158 0.00 0.00 46.69 3.53
951 1418 3.869272 CAATCCCGCAGAGCACGC 61.869 66.667 0.00 0.00 0.00 5.34
1026 1493 2.739784 CAGGATGGAGCTAGCCCG 59.260 66.667 12.13 0.00 0.00 6.13
1045 1512 2.043450 CGTGAGCCCTCTCTCCCT 60.043 66.667 0.00 0.00 40.03 4.20
1046 1513 2.124693 CGTGAGCCCTCTCTCCCTC 61.125 68.421 0.00 0.00 40.03 4.30
1047 1514 1.309688 GTGAGCCCTCTCTCCCTCT 59.690 63.158 0.00 0.00 40.03 3.69
1048 1515 0.755327 GTGAGCCCTCTCTCCCTCTC 60.755 65.000 0.00 0.00 40.03 3.20
1049 1516 0.923729 TGAGCCCTCTCTCCCTCTCT 60.924 60.000 0.00 0.00 40.03 3.10
1050 1517 0.178990 GAGCCCTCTCTCCCTCTCTC 60.179 65.000 0.00 0.00 36.42 3.20
1051 1518 0.627469 AGCCCTCTCTCCCTCTCTCT 60.627 60.000 0.00 0.00 0.00 3.10
1052 1519 0.178990 GCCCTCTCTCCCTCTCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
1053 1520 0.478507 CCCTCTCTCCCTCTCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
1054 1521 0.478507 CCTCTCTCCCTCTCTCTCCC 59.521 65.000 0.00 0.00 0.00 4.30
1055 1522 1.522900 CTCTCTCCCTCTCTCTCCCT 58.477 60.000 0.00 0.00 0.00 4.20
1056 1523 1.421646 CTCTCTCCCTCTCTCTCCCTC 59.578 61.905 0.00 0.00 0.00 4.30
1057 1524 1.010793 TCTCTCCCTCTCTCTCCCTCT 59.989 57.143 0.00 0.00 0.00 3.69
1058 1525 1.421646 CTCTCCCTCTCTCTCCCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
1059 1526 1.010793 TCTCCCTCTCTCTCCCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
1060 1527 1.421646 CTCCCTCTCTCTCCCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
1061 1528 1.010793 TCCCTCTCTCTCCCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
1062 1529 1.421646 CCCTCTCTCTCCCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
1063 1530 1.421646 CCTCTCTCTCCCTCTCTCTCC 59.578 61.905 0.00 0.00 0.00 3.71
1064 1531 1.421646 CTCTCTCTCCCTCTCTCTCCC 59.578 61.905 0.00 0.00 0.00 4.30
1065 1532 1.010793 TCTCTCTCCCTCTCTCTCCCT 59.989 57.143 0.00 0.00 0.00 4.20
1069 1536 0.998945 CTCCCTCTCTCTCCCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
1079 1546 2.518825 CCCTCCCTCCTCGTACCG 60.519 72.222 0.00 0.00 0.00 4.02
1143 1613 4.667948 CGTGCTTTCGCTGATTATGATTTC 59.332 41.667 0.00 0.00 36.97 2.17
1146 1616 6.195983 GTGCTTTCGCTGATTATGATTTCTTG 59.804 38.462 0.00 0.00 36.97 3.02
1148 1618 6.749118 GCTTTCGCTGATTATGATTTCTTGTT 59.251 34.615 0.00 0.00 0.00 2.83
1153 1623 7.754924 TCGCTGATTATGATTTCTTGTTTTTCC 59.245 33.333 0.00 0.00 0.00 3.13
1158 1628 9.578439 GATTATGATTTCTTGTTTTTCCTCTGG 57.422 33.333 0.00 0.00 0.00 3.86
1161 1631 1.995376 TCTTGTTTTTCCTCTGGGGC 58.005 50.000 0.00 0.00 34.39 5.80
1249 1720 4.458295 TCCGTTCTAGACTTGACCTTGTAG 59.542 45.833 0.00 0.00 0.00 2.74
1261 1732 6.038271 ACTTGACCTTGTAGCTTGTTTACTTG 59.962 38.462 0.00 0.00 0.00 3.16
1285 1756 2.029288 CTGCCGCAAGCTTCTCGAA 61.029 57.895 16.58 6.17 44.23 3.71
1291 1762 1.266598 CGCAAGCTTCTCGAATTCGTC 60.267 52.381 25.93 11.86 40.80 4.20
1322 1793 6.973474 CCGTTCGTATTCTTTCAGATCTAGTT 59.027 38.462 0.00 0.00 0.00 2.24
1384 1855 1.300542 GTAGCCTCGCAGATCCAGC 60.301 63.158 0.00 0.00 33.89 4.85
1435 1945 2.073056 TGTGATTTGGTTGGATCGTCG 58.927 47.619 0.00 0.00 0.00 5.12
1456 1966 3.546020 CGTTAGGGCATGCGAATTGTTAG 60.546 47.826 12.44 0.00 0.00 2.34
1472 1982 0.246910 TTAGGATACACGGCGTTGCA 59.753 50.000 11.19 0.00 41.41 4.08
1488 1998 3.809832 CGTTGCAGTTAGATATGAAGGGG 59.190 47.826 0.00 0.00 0.00 4.79
1504 2014 3.100039 GGGGGTAGACCTGGAAGTT 57.900 57.895 0.00 0.00 40.03 2.66
1530 2040 7.622081 TCTGTTATGGAGTCTATTTGGGTAGAA 59.378 37.037 0.00 0.00 32.81 2.10
1593 2103 7.779798 ACTGGGTGCATATGTTAACTGATTAAT 59.220 33.333 7.22 0.00 32.91 1.40
1594 2104 8.532186 TGGGTGCATATGTTAACTGATTAATT 57.468 30.769 7.22 0.00 32.91 1.40
1595 2105 9.634021 TGGGTGCATATGTTAACTGATTAATTA 57.366 29.630 7.22 0.00 32.91 1.40
1666 2176 3.322541 TGGCGTTCTATATCCGATTTCCA 59.677 43.478 0.00 0.00 0.00 3.53
1668 2178 4.567159 GGCGTTCTATATCCGATTTCCATC 59.433 45.833 0.00 0.00 0.00 3.51
1669 2179 4.567159 GCGTTCTATATCCGATTTCCATCC 59.433 45.833 0.00 0.00 0.00 3.51
1742 2252 0.298707 CAGTGTCGTACATGCATCGC 59.701 55.000 0.00 0.00 0.00 4.58
1752 2262 0.723414 CATGCATCGCACGAGAAACT 59.277 50.000 0.00 0.00 43.04 2.66
1790 2300 2.584791 GGATTTGTGAACACATGTCGC 58.415 47.619 8.46 0.00 41.52 5.19
1827 2337 7.603963 TTTATGCAGTTATTAAGTCGAGCAA 57.396 32.000 0.00 0.00 34.15 3.91
1847 2357 4.615541 GCAATAGTTAAAGCGTTCCACAAC 59.384 41.667 0.00 0.00 0.00 3.32
1866 2376 7.939039 TCCACAACTGATATTCACTTTCTTCTT 59.061 33.333 0.00 0.00 0.00 2.52
2015 2525 1.340248 TCTCCTGTTGAACACCGACTC 59.660 52.381 0.00 0.00 0.00 3.36
2016 2526 1.068588 CTCCTGTTGAACACCGACTCA 59.931 52.381 0.00 0.00 0.00 3.41
2036 2546 7.148573 CGACTCACTACTAATTGATTTGCTTGT 60.149 37.037 0.00 0.00 0.00 3.16
2130 2640 1.379843 CCGCCATACCCAAAAGCCT 60.380 57.895 0.00 0.00 0.00 4.58
2202 2712 8.051535 AGAGTGATTGAAGATAACCATGTCATT 58.948 33.333 0.00 0.00 0.00 2.57
2222 2732 1.339055 TGATGGCAAGCAGGTACACTC 60.339 52.381 0.00 0.00 0.00 3.51
2224 2734 1.741770 GGCAAGCAGGTACACTCCG 60.742 63.158 0.00 0.00 0.00 4.63
2267 2777 7.147320 TGGAATTATATCAGTTCACATGGGAGT 60.147 37.037 0.00 0.00 0.00 3.85
2332 2842 9.965902 ATGTTATGAAGTTTAAGATCCTTGACT 57.034 29.630 0.00 0.00 0.00 3.41
2393 2903 9.913310 ATGGGGTTTCTTTTTAAGAATCAAAAA 57.087 25.926 2.97 0.00 46.15 1.94
2556 3066 8.031864 CCTACTGCTCTAACAGATGGTATTATG 58.968 40.741 0.00 0.00 40.25 1.90
2557 3067 7.366847 ACTGCTCTAACAGATGGTATTATGT 57.633 36.000 0.00 0.00 40.25 2.29
2558 3068 7.212976 ACTGCTCTAACAGATGGTATTATGTG 58.787 38.462 0.00 0.00 40.25 3.21
2561 3071 7.710907 TGCTCTAACAGATGGTATTATGTGTTC 59.289 37.037 4.81 0.00 41.76 3.18
2813 3323 6.194967 TGATCTAAATGGTACTCAGGTGAGA 58.805 40.000 13.99 0.00 44.74 3.27
2845 3355 4.024809 GTGCTTTCTAAACTTTCGTGAGCT 60.025 41.667 0.00 0.00 0.00 4.09
2855 3365 3.489785 ACTTTCGTGAGCTTAGTTTCGTG 59.510 43.478 0.00 0.00 0.00 4.35
2935 3445 2.726066 CGCCTGATTTGCTCTTTCGTTC 60.726 50.000 0.00 0.00 0.00 3.95
3171 3681 1.068816 GTTACAACAATGGTGGTCGCC 60.069 52.381 2.39 0.00 32.09 5.54
3191 3701 2.490902 CCTTGCCCCCTATAAATCACCC 60.491 54.545 0.00 0.00 0.00 4.61
3235 3745 4.806247 CAGCTACAGTAGTGCTTATGTTCC 59.194 45.833 9.42 0.00 32.37 3.62
3236 3746 4.712337 AGCTACAGTAGTGCTTATGTTCCT 59.288 41.667 9.42 0.00 31.19 3.36
3237 3747 4.806247 GCTACAGTAGTGCTTATGTTCCTG 59.194 45.833 9.42 0.00 0.00 3.86
3238 3748 4.207891 ACAGTAGTGCTTATGTTCCTGG 57.792 45.455 0.00 0.00 0.00 4.45
3239 3749 2.939103 CAGTAGTGCTTATGTTCCTGGC 59.061 50.000 0.00 0.00 0.00 4.85
3240 3750 2.571653 AGTAGTGCTTATGTTCCTGGCA 59.428 45.455 0.00 0.00 0.00 4.92
3241 3751 2.119801 AGTGCTTATGTTCCTGGCAG 57.880 50.000 7.75 7.75 33.47 4.85
3242 3752 0.453390 GTGCTTATGTTCCTGGCAGC 59.547 55.000 9.56 0.00 33.47 5.25
3243 3753 0.329261 TGCTTATGTTCCTGGCAGCT 59.671 50.000 9.56 0.00 0.00 4.24
3244 3754 1.559219 TGCTTATGTTCCTGGCAGCTA 59.441 47.619 9.56 0.00 0.00 3.32
3245 3755 1.943340 GCTTATGTTCCTGGCAGCTAC 59.057 52.381 9.56 9.51 0.00 3.58
3246 3756 2.680805 GCTTATGTTCCTGGCAGCTACA 60.681 50.000 18.17 18.17 0.00 2.74
3247 3757 2.988010 TATGTTCCTGGCAGCTACAG 57.012 50.000 19.80 9.94 35.74 2.74
3248 3758 0.987294 ATGTTCCTGGCAGCTACAGT 59.013 50.000 19.80 9.61 34.16 3.55
3249 3759 1.639722 TGTTCCTGGCAGCTACAGTA 58.360 50.000 9.56 0.00 34.16 2.74
3250 3760 1.550524 TGTTCCTGGCAGCTACAGTAG 59.449 52.381 9.56 2.85 34.16 2.57
3251 3761 1.550976 GTTCCTGGCAGCTACAGTAGT 59.449 52.381 9.56 0.00 34.16 2.73
3252 3762 1.186200 TCCTGGCAGCTACAGTAGTG 58.814 55.000 9.56 7.45 34.16 2.74
3253 3763 0.460987 CCTGGCAGCTACAGTAGTGC 60.461 60.000 19.20 19.20 34.16 4.40
3254 3764 0.534412 CTGGCAGCTACAGTAGTGCT 59.466 55.000 23.22 10.49 35.02 4.40
3255 3765 0.976641 TGGCAGCTACAGTAGTGCTT 59.023 50.000 23.22 3.78 35.02 3.91
3256 3766 2.166459 CTGGCAGCTACAGTAGTGCTTA 59.834 50.000 23.22 16.12 35.02 3.09
3257 3767 2.766263 TGGCAGCTACAGTAGTGCTTAT 59.234 45.455 23.22 0.76 35.02 1.73
3258 3768 3.126831 GGCAGCTACAGTAGTGCTTATG 58.873 50.000 23.22 10.57 35.02 1.90
3259 3769 3.430929 GGCAGCTACAGTAGTGCTTATGT 60.431 47.826 23.22 0.53 35.02 2.29
3260 3770 4.184629 GCAGCTACAGTAGTGCTTATGTT 58.815 43.478 19.73 0.00 32.37 2.71
3261 3771 4.268884 GCAGCTACAGTAGTGCTTATGTTC 59.731 45.833 19.73 0.00 32.37 3.18
3474 4107 2.615986 TCCTAGTGTTAGGTCTGGCA 57.384 50.000 0.89 0.00 45.71 4.92
3478 4111 1.362224 AGTGTTAGGTCTGGCATGGT 58.638 50.000 0.00 0.00 0.00 3.55
3631 4264 5.394663 GCAGCTAGAAGAACCTTGTGATCTA 60.395 44.000 0.00 0.00 0.00 1.98
3722 4355 9.832445 ACTGAAGTTGAAATTTAGACTTACTCA 57.168 29.630 15.00 10.32 32.85 3.41
3771 4404 3.940209 TGCCAAGTTCCATGTGAAATC 57.060 42.857 0.00 0.00 33.94 2.17
3797 4430 5.637006 TGCTATATCGGTTTTGCTTGTTT 57.363 34.783 0.00 0.00 0.00 2.83
3843 4476 1.468127 TCACATACAGCATTGCCAACG 59.532 47.619 4.70 0.00 0.00 4.10
3855 4488 0.615850 TGCCAACGTATCCACCATCA 59.384 50.000 0.00 0.00 0.00 3.07
3858 4491 2.705730 CCAACGTATCCACCATCACAA 58.294 47.619 0.00 0.00 0.00 3.33
3869 4502 4.996122 TCCACCATCACAATTTTCAATTGC 59.004 37.500 8.77 0.00 32.55 3.56
3893 4526 4.524714 TGATCCTATAGTGCTCTAGGTTGC 59.475 45.833 9.53 0.00 36.64 4.17
3939 4572 4.478317 TGGGATGACATTATGGTCCTTTCT 59.522 41.667 11.35 0.00 36.97 2.52
3979 4612 4.043435 AGGCCTTTGTCAGTTAATCCTCTT 59.957 41.667 0.00 0.00 0.00 2.85
4016 4654 1.351350 AGGGTTAGACCTCTGGTTTGC 59.649 52.381 0.00 0.00 38.64 3.68
4023 4661 2.087646 GACCTCTGGTTTGCAGGAATC 58.912 52.381 0.00 0.00 35.25 2.52
4083 4752 3.366052 TCCCTTTGATCCCTTTGTAGC 57.634 47.619 0.00 0.00 0.00 3.58
4129 4798 9.341899 GAAAATAAACATTACGCAAGACTCAAT 57.658 29.630 0.00 0.00 43.62 2.57
4167 4836 6.318900 CCTATCCTGTGAACCAAGATTTAACC 59.681 42.308 0.00 0.00 0.00 2.85
4201 4870 0.698238 TCCATCCCCACCAAACTGAG 59.302 55.000 0.00 0.00 0.00 3.35
4202 4871 0.405585 CCATCCCCACCAAACTGAGT 59.594 55.000 0.00 0.00 0.00 3.41
4227 4896 2.102925 CCCTTGGTTGCATTGTGAACTT 59.897 45.455 0.00 0.00 0.00 2.66
4228 4897 3.125316 CCTTGGTTGCATTGTGAACTTG 58.875 45.455 0.00 0.00 0.00 3.16
4270 4939 5.412526 TGGTTTGTCGAGTTTACATGTTC 57.587 39.130 2.30 0.00 0.00 3.18
4280 4949 8.875803 GTCGAGTTTACATGTTCAATTATACCA 58.124 33.333 2.30 0.00 0.00 3.25
4325 4999 5.403166 TGTGTAACATTGTAGTACGCACTTC 59.597 40.000 9.68 0.00 45.67 3.01
4404 5079 7.915293 TGGAACTAAATTGACGTATTCATGT 57.085 32.000 0.00 0.00 32.84 3.21
4414 5089 5.000591 TGACGTATTCATGTGTTCAATGGT 58.999 37.500 0.00 0.00 0.00 3.55
4521 5207 0.037447 GCCTCTCACCAAAGAAGCCT 59.963 55.000 0.00 0.00 28.28 4.58
4522 5208 1.279271 GCCTCTCACCAAAGAAGCCTA 59.721 52.381 0.00 0.00 28.28 3.93
4523 5209 2.679349 GCCTCTCACCAAAGAAGCCTAG 60.679 54.545 0.00 0.00 28.28 3.02
4524 5210 2.093235 CCTCTCACCAAAGAAGCCTAGG 60.093 54.545 3.67 3.67 0.00 3.02
4525 5211 2.834549 CTCTCACCAAAGAAGCCTAGGA 59.165 50.000 14.75 0.00 0.00 2.94
4553 5263 0.672342 AACCACGAAGTCGCTAGTGT 59.328 50.000 2.66 0.00 41.61 3.55
4554 5264 0.039437 ACCACGAAGTCGCTAGTGTG 60.039 55.000 2.66 0.00 41.61 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.648112 CCAAAGAAGCAACTTAGTTTACCTTTC 59.352 37.037 0.00 0.00 0.00 2.62
1 2 7.489160 CCAAAGAAGCAACTTAGTTTACCTTT 58.511 34.615 0.00 1.03 0.00 3.11
2 3 6.461092 GCCAAAGAAGCAACTTAGTTTACCTT 60.461 38.462 0.00 0.00 0.00 3.50
3 4 5.009710 GCCAAAGAAGCAACTTAGTTTACCT 59.990 40.000 0.00 0.00 0.00 3.08
4 5 5.220381 GCCAAAGAAGCAACTTAGTTTACC 58.780 41.667 0.00 0.00 0.00 2.85
5 6 5.827666 TGCCAAAGAAGCAACTTAGTTTAC 58.172 37.500 0.00 0.00 37.28 2.01
6 7 6.458232 TTGCCAAAGAAGCAACTTAGTTTA 57.542 33.333 0.00 0.00 44.95 2.01
7 8 5.337578 TTGCCAAAGAAGCAACTTAGTTT 57.662 34.783 0.00 0.00 44.95 2.66
16 17 1.065401 CACTCGTTTGCCAAAGAAGCA 59.935 47.619 0.00 0.00 38.81 3.91
17 18 1.333619 TCACTCGTTTGCCAAAGAAGC 59.666 47.619 0.00 0.00 0.00 3.86
18 19 3.691049 TTCACTCGTTTGCCAAAGAAG 57.309 42.857 0.00 0.00 0.00 2.85
19 20 3.428316 GGTTTCACTCGTTTGCCAAAGAA 60.428 43.478 0.00 0.00 0.00 2.52
20 21 2.098443 GGTTTCACTCGTTTGCCAAAGA 59.902 45.455 0.00 0.00 0.00 2.52
21 22 2.159310 TGGTTTCACTCGTTTGCCAAAG 60.159 45.455 0.00 0.00 0.00 2.77
22 23 1.819288 TGGTTTCACTCGTTTGCCAAA 59.181 42.857 0.00 0.00 0.00 3.28
23 24 1.464734 TGGTTTCACTCGTTTGCCAA 58.535 45.000 0.00 0.00 0.00 4.52
24 25 1.464734 TTGGTTTCACTCGTTTGCCA 58.535 45.000 0.00 0.00 0.00 4.92
25 26 2.098443 TCTTTGGTTTCACTCGTTTGCC 59.902 45.455 0.00 0.00 0.00 4.52
26 27 3.414549 TCTTTGGTTTCACTCGTTTGC 57.585 42.857 0.00 0.00 0.00 3.68
27 28 4.102649 GGTTCTTTGGTTTCACTCGTTTG 58.897 43.478 0.00 0.00 0.00 2.93
28 29 4.014406 AGGTTCTTTGGTTTCACTCGTTT 58.986 39.130 0.00 0.00 0.00 3.60
29 30 3.617284 AGGTTCTTTGGTTTCACTCGTT 58.383 40.909 0.00 0.00 0.00 3.85
30 31 3.277142 AGGTTCTTTGGTTTCACTCGT 57.723 42.857 0.00 0.00 0.00 4.18
31 32 3.625764 TCAAGGTTCTTTGGTTTCACTCG 59.374 43.478 0.00 0.00 0.00 4.18
32 33 4.881850 TCTCAAGGTTCTTTGGTTTCACTC 59.118 41.667 0.00 0.00 0.00 3.51
33 34 4.855340 TCTCAAGGTTCTTTGGTTTCACT 58.145 39.130 0.00 0.00 0.00 3.41
34 35 4.036852 CCTCTCAAGGTTCTTTGGTTTCAC 59.963 45.833 0.00 0.00 37.94 3.18
35 36 4.207165 CCTCTCAAGGTTCTTTGGTTTCA 58.793 43.478 0.00 0.00 37.94 2.69
36 37 4.837896 CCTCTCAAGGTTCTTTGGTTTC 57.162 45.455 0.00 0.00 37.94 2.78
49 50 9.801873 TTCTTTCAATTTGTTTAACCTCTCAAG 57.198 29.630 0.00 0.00 0.00 3.02
51 52 9.801873 CTTTCTTTCAATTTGTTTAACCTCTCA 57.198 29.630 0.00 0.00 0.00 3.27
80 81 9.965748 CAAATTCGTTCAACTTTATTGTGTTTT 57.034 25.926 0.00 0.00 0.00 2.43
81 82 9.360093 TCAAATTCGTTCAACTTTATTGTGTTT 57.640 25.926 0.00 0.00 0.00 2.83
82 83 8.918961 TCAAATTCGTTCAACTTTATTGTGTT 57.081 26.923 0.00 0.00 0.00 3.32
83 84 8.402472 TCTCAAATTCGTTCAACTTTATTGTGT 58.598 29.630 0.00 0.00 0.00 3.72
84 85 8.781067 TCTCAAATTCGTTCAACTTTATTGTG 57.219 30.769 0.00 0.00 0.00 3.33
85 86 7.591426 GCTCTCAAATTCGTTCAACTTTATTGT 59.409 33.333 0.00 0.00 0.00 2.71
86 87 7.591057 TGCTCTCAAATTCGTTCAACTTTATTG 59.409 33.333 0.00 0.00 0.00 1.90
87 88 7.591426 GTGCTCTCAAATTCGTTCAACTTTATT 59.409 33.333 0.00 0.00 0.00 1.40
88 89 7.041098 AGTGCTCTCAAATTCGTTCAACTTTAT 60.041 33.333 0.00 0.00 0.00 1.40
89 90 6.260050 AGTGCTCTCAAATTCGTTCAACTTTA 59.740 34.615 0.00 0.00 0.00 1.85
90 91 5.066505 AGTGCTCTCAAATTCGTTCAACTTT 59.933 36.000 0.00 0.00 0.00 2.66
91 92 4.576463 AGTGCTCTCAAATTCGTTCAACTT 59.424 37.500 0.00 0.00 0.00 2.66
92 93 4.130118 AGTGCTCTCAAATTCGTTCAACT 58.870 39.130 0.00 0.00 0.00 3.16
93 94 4.458708 GAGTGCTCTCAAATTCGTTCAAC 58.541 43.478 10.86 0.00 40.18 3.18
94 95 3.498397 GGAGTGCTCTCAAATTCGTTCAA 59.502 43.478 17.04 0.00 42.05 2.69
95 96 3.067106 GGAGTGCTCTCAAATTCGTTCA 58.933 45.455 17.04 0.00 42.05 3.18
96 97 2.092838 CGGAGTGCTCTCAAATTCGTTC 59.907 50.000 17.04 0.00 42.05 3.95
97 98 2.069273 CGGAGTGCTCTCAAATTCGTT 58.931 47.619 17.04 0.00 42.05 3.85
98 99 1.673033 CCGGAGTGCTCTCAAATTCGT 60.673 52.381 17.04 0.00 42.05 3.85
99 100 1.002366 CCGGAGTGCTCTCAAATTCG 58.998 55.000 17.04 10.47 42.05 3.34
100 101 2.100605 ACCGGAGTGCTCTCAAATTC 57.899 50.000 9.46 0.00 42.05 2.17
101 102 2.832129 TCTACCGGAGTGCTCTCAAATT 59.168 45.455 9.46 1.68 42.05 1.82
102 103 2.457598 TCTACCGGAGTGCTCTCAAAT 58.542 47.619 9.46 4.48 42.05 2.32
103 104 1.919240 TCTACCGGAGTGCTCTCAAA 58.081 50.000 9.46 0.00 42.05 2.69
104 105 1.919240 TTCTACCGGAGTGCTCTCAA 58.081 50.000 9.46 0.00 42.05 3.02
105 106 1.919240 TTTCTACCGGAGTGCTCTCA 58.081 50.000 9.46 0.00 42.05 3.27
106 107 2.029290 TGTTTTCTACCGGAGTGCTCTC 60.029 50.000 9.46 7.26 39.76 3.20
107 108 1.968493 TGTTTTCTACCGGAGTGCTCT 59.032 47.619 9.46 0.00 0.00 4.09
108 109 2.029290 TCTGTTTTCTACCGGAGTGCTC 60.029 50.000 9.46 0.00 0.00 4.26
109 110 1.968493 TCTGTTTTCTACCGGAGTGCT 59.032 47.619 9.46 0.00 0.00 4.40
110 111 2.450609 TCTGTTTTCTACCGGAGTGC 57.549 50.000 9.46 0.00 0.00 4.40
111 112 5.744666 TTTTTCTGTTTTCTACCGGAGTG 57.255 39.130 9.46 0.00 0.00 3.51
130 131 8.762481 ACAAGGTTCTAGTAATGTTCCTTTTT 57.238 30.769 0.00 0.00 32.48 1.94
131 132 9.503399 CTACAAGGTTCTAGTAATGTTCCTTTT 57.497 33.333 0.00 0.00 32.48 2.27
132 133 8.101419 CCTACAAGGTTCTAGTAATGTTCCTTT 58.899 37.037 0.00 0.00 32.48 3.11
133 134 7.621796 CCTACAAGGTTCTAGTAATGTTCCTT 58.378 38.462 0.00 0.00 34.69 3.36
134 135 7.184067 CCTACAAGGTTCTAGTAATGTTCCT 57.816 40.000 0.00 0.00 0.00 3.36
150 151 7.979444 TTCTTATGTCTTTCAACCTACAAGG 57.021 36.000 0.00 0.00 42.49 3.61
154 155 9.626045 CCATTTTTCTTATGTCTTTCAACCTAC 57.374 33.333 0.00 0.00 0.00 3.18
155 156 8.303876 GCCATTTTTCTTATGTCTTTCAACCTA 58.696 33.333 0.00 0.00 0.00 3.08
156 157 7.015584 AGCCATTTTTCTTATGTCTTTCAACCT 59.984 33.333 0.00 0.00 0.00 3.50
157 158 7.116805 CAGCCATTTTTCTTATGTCTTTCAACC 59.883 37.037 0.00 0.00 0.00 3.77
158 159 7.359514 GCAGCCATTTTTCTTATGTCTTTCAAC 60.360 37.037 0.00 0.00 0.00 3.18
159 160 6.646240 GCAGCCATTTTTCTTATGTCTTTCAA 59.354 34.615 0.00 0.00 0.00 2.69
160 161 6.158598 GCAGCCATTTTTCTTATGTCTTTCA 58.841 36.000 0.00 0.00 0.00 2.69
161 162 6.158598 TGCAGCCATTTTTCTTATGTCTTTC 58.841 36.000 0.00 0.00 0.00 2.62
162 163 6.100404 TGCAGCCATTTTTCTTATGTCTTT 57.900 33.333 0.00 0.00 0.00 2.52
163 164 5.726980 TGCAGCCATTTTTCTTATGTCTT 57.273 34.783 0.00 0.00 0.00 3.01
164 165 5.726980 TTGCAGCCATTTTTCTTATGTCT 57.273 34.783 0.00 0.00 0.00 3.41
165 166 5.292589 CCATTGCAGCCATTTTTCTTATGTC 59.707 40.000 0.00 0.00 0.00 3.06
166 167 5.046448 TCCATTGCAGCCATTTTTCTTATGT 60.046 36.000 0.00 0.00 0.00 2.29
167 168 5.292589 GTCCATTGCAGCCATTTTTCTTATG 59.707 40.000 0.00 0.00 0.00 1.90
168 169 5.046448 TGTCCATTGCAGCCATTTTTCTTAT 60.046 36.000 0.00 0.00 0.00 1.73
169 170 4.282957 TGTCCATTGCAGCCATTTTTCTTA 59.717 37.500 0.00 0.00 0.00 2.10
170 171 3.071312 TGTCCATTGCAGCCATTTTTCTT 59.929 39.130 0.00 0.00 0.00 2.52
171 172 2.633967 TGTCCATTGCAGCCATTTTTCT 59.366 40.909 0.00 0.00 0.00 2.52
172 173 3.042871 TGTCCATTGCAGCCATTTTTC 57.957 42.857 0.00 0.00 0.00 2.29
173 174 3.071312 TCTTGTCCATTGCAGCCATTTTT 59.929 39.130 0.00 0.00 0.00 1.94
174 175 2.633967 TCTTGTCCATTGCAGCCATTTT 59.366 40.909 0.00 0.00 0.00 1.82
175 176 2.250031 TCTTGTCCATTGCAGCCATTT 58.750 42.857 0.00 0.00 0.00 2.32
176 177 1.927487 TCTTGTCCATTGCAGCCATT 58.073 45.000 0.00 0.00 0.00 3.16
177 178 1.822990 CTTCTTGTCCATTGCAGCCAT 59.177 47.619 0.00 0.00 0.00 4.40
178 179 1.250328 CTTCTTGTCCATTGCAGCCA 58.750 50.000 0.00 0.00 0.00 4.75
179 180 1.251251 ACTTCTTGTCCATTGCAGCC 58.749 50.000 0.00 0.00 0.00 4.85
180 181 5.755813 CATATACTTCTTGTCCATTGCAGC 58.244 41.667 0.00 0.00 0.00 5.25
181 182 5.297527 TGCATATACTTCTTGTCCATTGCAG 59.702 40.000 0.00 0.00 0.00 4.41
182 183 5.192176 TGCATATACTTCTTGTCCATTGCA 58.808 37.500 0.00 0.00 0.00 4.08
183 184 5.756195 TGCATATACTTCTTGTCCATTGC 57.244 39.130 0.00 0.00 0.00 3.56
184 185 6.183360 TGCTTGCATATACTTCTTGTCCATTG 60.183 38.462 0.00 0.00 0.00 2.82
185 186 5.887598 TGCTTGCATATACTTCTTGTCCATT 59.112 36.000 0.00 0.00 0.00 3.16
186 187 5.297776 GTGCTTGCATATACTTCTTGTCCAT 59.702 40.000 0.00 0.00 0.00 3.41
187 188 4.635765 GTGCTTGCATATACTTCTTGTCCA 59.364 41.667 0.00 0.00 0.00 4.02
188 189 4.878397 AGTGCTTGCATATACTTCTTGTCC 59.122 41.667 0.00 0.00 0.00 4.02
189 190 5.814705 AGAGTGCTTGCATATACTTCTTGTC 59.185 40.000 0.00 0.00 0.00 3.18
190 191 5.583854 CAGAGTGCTTGCATATACTTCTTGT 59.416 40.000 0.00 0.00 0.00 3.16
191 192 5.007430 CCAGAGTGCTTGCATATACTTCTTG 59.993 44.000 0.00 0.00 0.00 3.02
192 193 5.121811 CCAGAGTGCTTGCATATACTTCTT 58.878 41.667 0.00 0.00 0.00 2.52
193 194 4.163078 ACCAGAGTGCTTGCATATACTTCT 59.837 41.667 0.00 0.00 0.00 2.85
194 195 4.446371 ACCAGAGTGCTTGCATATACTTC 58.554 43.478 0.00 0.00 0.00 3.01
195 196 4.494091 ACCAGAGTGCTTGCATATACTT 57.506 40.909 0.00 0.00 0.00 2.24
196 197 4.895889 TCTACCAGAGTGCTTGCATATACT 59.104 41.667 0.00 0.00 0.00 2.12
197 198 5.201713 TCTACCAGAGTGCTTGCATATAC 57.798 43.478 0.00 0.00 0.00 1.47
198 199 5.869649 TTCTACCAGAGTGCTTGCATATA 57.130 39.130 0.00 0.00 0.00 0.86
199 200 4.760530 TTCTACCAGAGTGCTTGCATAT 57.239 40.909 0.00 0.00 0.00 1.78
200 201 4.253685 GTTTCTACCAGAGTGCTTGCATA 58.746 43.478 0.00 0.00 0.00 3.14
201 202 3.077359 GTTTCTACCAGAGTGCTTGCAT 58.923 45.455 0.00 0.00 0.00 3.96
202 203 2.494059 GTTTCTACCAGAGTGCTTGCA 58.506 47.619 0.00 0.00 0.00 4.08
203 204 1.461127 CGTTTCTACCAGAGTGCTTGC 59.539 52.381 0.00 0.00 0.00 4.01
204 205 2.989840 CTCGTTTCTACCAGAGTGCTTG 59.010 50.000 0.00 0.00 0.00 4.01
205 206 2.891580 TCTCGTTTCTACCAGAGTGCTT 59.108 45.455 0.00 0.00 32.90 3.91
206 207 2.515854 TCTCGTTTCTACCAGAGTGCT 58.484 47.619 0.00 0.00 32.90 4.40
207 208 3.182967 CATCTCGTTTCTACCAGAGTGC 58.817 50.000 0.00 0.00 32.90 4.40
208 209 4.442375 ACATCTCGTTTCTACCAGAGTG 57.558 45.455 0.00 0.00 32.90 3.51
209 210 5.008331 TGTACATCTCGTTTCTACCAGAGT 58.992 41.667 0.00 0.00 32.90 3.24
210 211 5.562506 TGTACATCTCGTTTCTACCAGAG 57.437 43.478 0.00 0.00 0.00 3.35
211 212 5.970317 TTGTACATCTCGTTTCTACCAGA 57.030 39.130 0.00 0.00 0.00 3.86
212 213 6.387465 TCTTTGTACATCTCGTTTCTACCAG 58.613 40.000 0.00 0.00 0.00 4.00
213 214 6.335471 TCTTTGTACATCTCGTTTCTACCA 57.665 37.500 0.00 0.00 0.00 3.25
214 215 6.183359 CGTTCTTTGTACATCTCGTTTCTACC 60.183 42.308 0.00 0.00 0.00 3.18
215 216 6.580041 TCGTTCTTTGTACATCTCGTTTCTAC 59.420 38.462 0.00 0.00 0.00 2.59
216 217 6.671190 TCGTTCTTTGTACATCTCGTTTCTA 58.329 36.000 0.00 0.00 0.00 2.10
217 218 5.526115 TCGTTCTTTGTACATCTCGTTTCT 58.474 37.500 0.00 0.00 0.00 2.52
218 219 5.817616 TCGTTCTTTGTACATCTCGTTTC 57.182 39.130 0.00 0.00 0.00 2.78
219 220 7.063074 CCTTATCGTTCTTTGTACATCTCGTTT 59.937 37.037 0.00 0.00 0.00 3.60
220 221 6.530534 CCTTATCGTTCTTTGTACATCTCGTT 59.469 38.462 0.00 0.00 0.00 3.85
221 222 6.034591 CCTTATCGTTCTTTGTACATCTCGT 58.965 40.000 0.00 0.00 0.00 4.18
222 223 6.263344 TCCTTATCGTTCTTTGTACATCTCG 58.737 40.000 0.00 0.00 0.00 4.04
223 224 7.921214 TGATCCTTATCGTTCTTTGTACATCTC 59.079 37.037 0.00 0.00 34.60 2.75
224 225 7.782049 TGATCCTTATCGTTCTTTGTACATCT 58.218 34.615 0.00 0.00 34.60 2.90
225 226 8.420374 TTGATCCTTATCGTTCTTTGTACATC 57.580 34.615 0.00 0.00 34.60 3.06
226 227 8.964476 ATTGATCCTTATCGTTCTTTGTACAT 57.036 30.769 0.00 0.00 34.60 2.29
227 228 8.786826 AATTGATCCTTATCGTTCTTTGTACA 57.213 30.769 0.00 0.00 34.60 2.90
230 231 9.613428 TCATAATTGATCCTTATCGTTCTTTGT 57.387 29.630 0.00 0.00 34.60 2.83
231 232 9.869844 GTCATAATTGATCCTTATCGTTCTTTG 57.130 33.333 0.00 0.00 34.60 2.77
232 233 9.613428 TGTCATAATTGATCCTTATCGTTCTTT 57.387 29.630 0.00 0.00 34.60 2.52
233 234 9.613428 TTGTCATAATTGATCCTTATCGTTCTT 57.387 29.630 0.00 0.00 34.60 2.52
234 235 9.046296 GTTGTCATAATTGATCCTTATCGTTCT 57.954 33.333 0.00 0.00 34.60 3.01
235 236 8.826710 TGTTGTCATAATTGATCCTTATCGTTC 58.173 33.333 0.00 0.00 34.60 3.95
236 237 8.612619 GTGTTGTCATAATTGATCCTTATCGTT 58.387 33.333 0.00 0.00 34.60 3.85
237 238 7.987458 AGTGTTGTCATAATTGATCCTTATCGT 59.013 33.333 0.00 0.00 34.60 3.73
238 239 8.370493 AGTGTTGTCATAATTGATCCTTATCG 57.630 34.615 0.00 0.00 34.60 2.92
239 240 8.778358 GGAGTGTTGTCATAATTGATCCTTATC 58.222 37.037 0.00 0.00 33.56 1.75
240 241 7.442364 CGGAGTGTTGTCATAATTGATCCTTAT 59.558 37.037 0.00 0.00 33.56 1.73
241 242 6.761242 CGGAGTGTTGTCATAATTGATCCTTA 59.239 38.462 0.00 0.00 33.56 2.69
242 243 5.586243 CGGAGTGTTGTCATAATTGATCCTT 59.414 40.000 0.00 0.00 33.56 3.36
243 244 5.118990 CGGAGTGTTGTCATAATTGATCCT 58.881 41.667 0.00 0.00 33.56 3.24
244 245 4.273480 CCGGAGTGTTGTCATAATTGATCC 59.727 45.833 0.00 0.00 33.56 3.36
245 246 4.876107 ACCGGAGTGTTGTCATAATTGATC 59.124 41.667 9.46 0.00 33.56 2.92
246 247 4.843728 ACCGGAGTGTTGTCATAATTGAT 58.156 39.130 9.46 0.00 33.56 2.57
247 248 4.280436 ACCGGAGTGTTGTCATAATTGA 57.720 40.909 9.46 0.00 0.00 2.57
248 249 4.379394 CCAACCGGAGTGTTGTCATAATTG 60.379 45.833 9.46 0.00 43.22 2.32
249 250 3.756434 CCAACCGGAGTGTTGTCATAATT 59.244 43.478 9.46 0.00 43.22 1.40
250 251 3.008594 TCCAACCGGAGTGTTGTCATAAT 59.991 43.478 9.46 0.00 43.22 1.28
251 252 2.369203 TCCAACCGGAGTGTTGTCATAA 59.631 45.455 9.46 0.00 43.22 1.90
252 253 1.972075 TCCAACCGGAGTGTTGTCATA 59.028 47.619 9.46 0.00 43.22 2.15
253 254 0.762418 TCCAACCGGAGTGTTGTCAT 59.238 50.000 9.46 0.00 43.22 3.06
254 255 0.542333 TTCCAACCGGAGTGTTGTCA 59.458 50.000 9.46 0.00 44.10 3.58
255 256 1.670791 TTTCCAACCGGAGTGTTGTC 58.329 50.000 9.46 0.00 44.10 3.18
256 257 1.953686 CATTTCCAACCGGAGTGTTGT 59.046 47.619 9.46 0.00 44.10 3.32
257 258 1.269448 CCATTTCCAACCGGAGTGTTG 59.731 52.381 9.46 1.03 44.10 3.33
258 259 1.144093 TCCATTTCCAACCGGAGTGTT 59.856 47.619 9.46 0.00 44.10 3.32
259 260 0.768622 TCCATTTCCAACCGGAGTGT 59.231 50.000 9.46 0.00 44.10 3.55
260 261 1.453155 CTCCATTTCCAACCGGAGTG 58.547 55.000 9.46 5.56 44.10 3.51
261 262 0.328258 CCTCCATTTCCAACCGGAGT 59.672 55.000 9.46 0.00 44.10 3.85
262 263 0.394352 CCCTCCATTTCCAACCGGAG 60.394 60.000 9.46 0.00 44.10 4.63
263 264 1.688811 CCCTCCATTTCCAACCGGA 59.311 57.895 9.46 0.00 40.60 5.14
264 265 2.052104 GCCCTCCATTTCCAACCGG 61.052 63.158 0.00 0.00 0.00 5.28
265 266 1.304052 TGCCCTCCATTTCCAACCG 60.304 57.895 0.00 0.00 0.00 4.44
266 267 0.251787 ACTGCCCTCCATTTCCAACC 60.252 55.000 0.00 0.00 0.00 3.77
267 268 2.507407 TACTGCCCTCCATTTCCAAC 57.493 50.000 0.00 0.00 0.00 3.77
268 269 3.756082 ATTACTGCCCTCCATTTCCAA 57.244 42.857 0.00 0.00 0.00 3.53
269 270 4.415179 TCATATTACTGCCCTCCATTTCCA 59.585 41.667 0.00 0.00 0.00 3.53
270 271 4.985538 TCATATTACTGCCCTCCATTTCC 58.014 43.478 0.00 0.00 0.00 3.13
271 272 6.064717 AGTTCATATTACTGCCCTCCATTTC 58.935 40.000 0.00 0.00 0.00 2.17
272 273 6.018433 AGTTCATATTACTGCCCTCCATTT 57.982 37.500 0.00 0.00 0.00 2.32
273 274 5.653255 AGTTCATATTACTGCCCTCCATT 57.347 39.130 0.00 0.00 0.00 3.16
274 275 5.132648 TCAAGTTCATATTACTGCCCTCCAT 59.867 40.000 0.00 0.00 0.00 3.41
275 276 4.473196 TCAAGTTCATATTACTGCCCTCCA 59.527 41.667 0.00 0.00 0.00 3.86
276 277 4.816925 GTCAAGTTCATATTACTGCCCTCC 59.183 45.833 0.00 0.00 0.00 4.30
277 278 5.428253 TGTCAAGTTCATATTACTGCCCTC 58.572 41.667 0.00 0.00 0.00 4.30
278 279 5.435686 TGTCAAGTTCATATTACTGCCCT 57.564 39.130 0.00 0.00 0.00 5.19
279 280 6.509418 TTTGTCAAGTTCATATTACTGCCC 57.491 37.500 0.00 0.00 0.00 5.36
301 302 4.344679 TCACATCCAAGTGCCTTCATTTTT 59.655 37.500 0.00 0.00 39.35 1.94
302 303 3.896888 TCACATCCAAGTGCCTTCATTTT 59.103 39.130 0.00 0.00 39.35 1.82
303 304 3.499338 TCACATCCAAGTGCCTTCATTT 58.501 40.909 0.00 0.00 39.35 2.32
304 305 3.087031 CTCACATCCAAGTGCCTTCATT 58.913 45.455 0.00 0.00 39.35 2.57
305 306 2.040813 ACTCACATCCAAGTGCCTTCAT 59.959 45.455 0.00 0.00 39.35 2.57
306 307 1.421268 ACTCACATCCAAGTGCCTTCA 59.579 47.619 0.00 0.00 39.35 3.02
307 308 2.079925 GACTCACATCCAAGTGCCTTC 58.920 52.381 0.00 0.00 39.35 3.46
308 309 1.271597 GGACTCACATCCAAGTGCCTT 60.272 52.381 0.00 0.00 39.35 4.35
309 310 0.326264 GGACTCACATCCAAGTGCCT 59.674 55.000 0.00 0.00 39.35 4.75
310 311 1.021390 CGGACTCACATCCAAGTGCC 61.021 60.000 0.00 0.00 38.87 5.01
311 312 1.021390 CCGGACTCACATCCAAGTGC 61.021 60.000 0.00 0.00 38.87 4.40
312 313 0.321671 ACCGGACTCACATCCAAGTG 59.678 55.000 9.46 0.00 38.87 3.16
313 314 1.056660 AACCGGACTCACATCCAAGT 58.943 50.000 9.46 0.00 38.87 3.16
314 315 2.496070 TCTAACCGGACTCACATCCAAG 59.504 50.000 9.46 0.00 38.87 3.61
315 316 2.531771 TCTAACCGGACTCACATCCAA 58.468 47.619 9.46 0.00 38.87 3.53
316 317 2.225382 TCTAACCGGACTCACATCCA 57.775 50.000 9.46 0.00 38.87 3.41
317 318 2.758979 TCTTCTAACCGGACTCACATCC 59.241 50.000 9.46 0.00 35.16 3.51
318 319 3.181485 CCTCTTCTAACCGGACTCACATC 60.181 52.174 9.46 0.00 0.00 3.06
319 320 2.761208 CCTCTTCTAACCGGACTCACAT 59.239 50.000 9.46 0.00 0.00 3.21
320 321 2.168496 CCTCTTCTAACCGGACTCACA 58.832 52.381 9.46 0.00 0.00 3.58
321 322 2.444421 TCCTCTTCTAACCGGACTCAC 58.556 52.381 9.46 0.00 0.00 3.51
322 323 2.893215 TCCTCTTCTAACCGGACTCA 57.107 50.000 9.46 0.00 0.00 3.41
323 324 3.700038 TCATTCCTCTTCTAACCGGACTC 59.300 47.826 9.46 0.00 0.00 3.36
324 325 3.709587 TCATTCCTCTTCTAACCGGACT 58.290 45.455 9.46 0.00 0.00 3.85
325 326 4.674281 ATCATTCCTCTTCTAACCGGAC 57.326 45.455 9.46 0.00 0.00 4.79
326 327 4.281182 GCTATCATTCCTCTTCTAACCGGA 59.719 45.833 9.46 0.00 0.00 5.14
327 328 4.561105 GCTATCATTCCTCTTCTAACCGG 58.439 47.826 0.00 0.00 0.00 5.28
328 329 4.039245 TGGCTATCATTCCTCTTCTAACCG 59.961 45.833 0.00 0.00 0.00 4.44
329 330 5.163301 TGTGGCTATCATTCCTCTTCTAACC 60.163 44.000 0.00 0.00 0.00 2.85
330 331 5.918608 TGTGGCTATCATTCCTCTTCTAAC 58.081 41.667 0.00 0.00 0.00 2.34
331 332 6.070251 TGTTGTGGCTATCATTCCTCTTCTAA 60.070 38.462 0.00 0.00 0.00 2.10
332 333 5.425217 TGTTGTGGCTATCATTCCTCTTCTA 59.575 40.000 0.00 0.00 0.00 2.10
333 334 4.225942 TGTTGTGGCTATCATTCCTCTTCT 59.774 41.667 0.00 0.00 0.00 2.85
334 335 4.333926 GTGTTGTGGCTATCATTCCTCTTC 59.666 45.833 0.00 0.00 0.00 2.87
335 336 4.018960 AGTGTTGTGGCTATCATTCCTCTT 60.019 41.667 0.00 0.00 0.00 2.85
336 337 3.521126 AGTGTTGTGGCTATCATTCCTCT 59.479 43.478 0.00 0.00 0.00 3.69
337 338 3.873952 GAGTGTTGTGGCTATCATTCCTC 59.126 47.826 0.00 0.00 0.00 3.71
338 339 3.370953 GGAGTGTTGTGGCTATCATTCCT 60.371 47.826 0.00 0.00 35.05 3.36
339 340 2.945668 GGAGTGTTGTGGCTATCATTCC 59.054 50.000 0.00 0.00 31.68 3.01
340 341 2.609459 CGGAGTGTTGTGGCTATCATTC 59.391 50.000 0.00 0.00 0.00 2.67
341 342 2.632377 CGGAGTGTTGTGGCTATCATT 58.368 47.619 0.00 0.00 0.00 2.57
342 343 1.134401 CCGGAGTGTTGTGGCTATCAT 60.134 52.381 0.00 0.00 0.00 2.45
343 344 0.249120 CCGGAGTGTTGTGGCTATCA 59.751 55.000 0.00 0.00 0.00 2.15
344 345 0.249398 ACCGGAGTGTTGTGGCTATC 59.751 55.000 9.46 0.00 0.00 2.08
345 346 0.036388 CACCGGAGTGTTGTGGCTAT 60.036 55.000 9.46 0.00 39.30 2.97
346 347 1.369692 CACCGGAGTGTTGTGGCTA 59.630 57.895 9.46 0.00 39.30 3.93
347 348 2.111043 CACCGGAGTGTTGTGGCT 59.889 61.111 9.46 0.00 39.30 4.75
348 349 3.660111 GCACCGGAGTGTTGTGGC 61.660 66.667 9.46 0.00 46.35 5.01
349 350 3.345808 CGCACCGGAGTGTTGTGG 61.346 66.667 9.46 0.00 46.35 4.17
350 351 4.012895 GCGCACCGGAGTGTTGTG 62.013 66.667 9.46 2.70 46.35 3.33
351 352 4.235762 AGCGCACCGGAGTGTTGT 62.236 61.111 9.46 0.00 46.35 3.32
352 353 3.414700 GAGCGCACCGGAGTGTTG 61.415 66.667 9.46 0.00 46.35 3.33
353 354 4.681978 GGAGCGCACCGGAGTGTT 62.682 66.667 9.46 4.45 46.35 3.32
362 363 3.426568 GGCAAGTGAGGAGCGCAC 61.427 66.667 11.47 1.97 34.50 5.34
363 364 4.704833 GGGCAAGTGAGGAGCGCA 62.705 66.667 11.47 0.00 40.46 6.09
384 385 1.509787 CTTGACGCAAACGCATCGG 60.510 57.895 0.00 0.00 45.53 4.18
391 392 1.064060 ACAACTGAGCTTGACGCAAAC 59.936 47.619 0.00 0.00 42.61 2.93
393 394 2.135139 CTACAACTGAGCTTGACGCAA 58.865 47.619 0.00 0.00 42.61 4.85
398 399 7.386059 TGATTGATTACTACAACTGAGCTTGA 58.614 34.615 0.00 0.00 0.00 3.02
404 405 7.942341 ACCCTTTTGATTGATTACTACAACTGA 59.058 33.333 0.00 0.00 0.00 3.41
406 407 7.119262 CGACCCTTTTGATTGATTACTACAACT 59.881 37.037 0.00 0.00 0.00 3.16
409 410 6.469410 ACGACCCTTTTGATTGATTACTACA 58.531 36.000 0.00 0.00 0.00 2.74
432 433 1.865865 TTCACTCTCGCCACTTCAAC 58.134 50.000 0.00 0.00 0.00 3.18
433 434 2.102420 TCTTTCACTCTCGCCACTTCAA 59.898 45.455 0.00 0.00 0.00 2.69
439 440 1.911057 TCTCTCTTTCACTCTCGCCA 58.089 50.000 0.00 0.00 0.00 5.69
490 491 5.782893 TTTGTAGTGGGGTTCATGAAAAG 57.217 39.130 10.35 0.00 0.00 2.27
494 495 3.605634 CGATTTGTAGTGGGGTTCATGA 58.394 45.455 0.00 0.00 0.00 3.07
502 503 1.067425 TGACGTCCGATTTGTAGTGGG 60.067 52.381 14.12 0.00 0.00 4.61
530 531 9.054922 CATACAAAAGTTTGATTTTCCATGGTT 57.945 29.630 12.58 0.00 40.55 3.67
552 553 4.541779 TCGGCAAACACAAATTGTCATAC 58.458 39.130 0.00 0.00 37.51 2.39
553 554 4.517075 TCTCGGCAAACACAAATTGTCATA 59.483 37.500 0.00 0.00 37.51 2.15
602 604 4.425577 AAATGAACTCAGACGGATTTGC 57.574 40.909 0.00 0.00 0.00 3.68
645 648 3.759086 GGCGTGAGGATGACAGATATAGA 59.241 47.826 0.00 0.00 0.00 1.98
714 718 7.035840 AGAGTAATGCTAGAAATTTGGCATG 57.964 36.000 17.70 0.00 43.39 4.06
726 730 9.547753 TCAGCCTAATAAAAAGAGTAATGCTAG 57.452 33.333 0.00 0.00 0.00 3.42
729 733 7.910683 GTGTCAGCCTAATAAAAAGAGTAATGC 59.089 37.037 0.00 0.00 0.00 3.56
730 734 8.946085 TGTGTCAGCCTAATAAAAAGAGTAATG 58.054 33.333 0.00 0.00 0.00 1.90
731 735 9.686683 ATGTGTCAGCCTAATAAAAAGAGTAAT 57.313 29.630 0.00 0.00 0.00 1.89
732 736 8.946085 CATGTGTCAGCCTAATAAAAAGAGTAA 58.054 33.333 0.00 0.00 0.00 2.24
733 737 7.552687 CCATGTGTCAGCCTAATAAAAAGAGTA 59.447 37.037 0.00 0.00 0.00 2.59
734 738 6.375455 CCATGTGTCAGCCTAATAAAAAGAGT 59.625 38.462 0.00 0.00 0.00 3.24
735 739 6.183360 CCCATGTGTCAGCCTAATAAAAAGAG 60.183 42.308 0.00 0.00 0.00 2.85
736 740 5.652014 CCCATGTGTCAGCCTAATAAAAAGA 59.348 40.000 0.00 0.00 0.00 2.52
737 741 5.679638 GCCCATGTGTCAGCCTAATAAAAAG 60.680 44.000 0.00 0.00 0.00 2.27
738 742 4.159506 GCCCATGTGTCAGCCTAATAAAAA 59.840 41.667 0.00 0.00 0.00 1.94
739 743 3.699038 GCCCATGTGTCAGCCTAATAAAA 59.301 43.478 0.00 0.00 0.00 1.52
740 744 3.287222 GCCCATGTGTCAGCCTAATAAA 58.713 45.455 0.00 0.00 0.00 1.40
741 745 2.422803 GGCCCATGTGTCAGCCTAATAA 60.423 50.000 0.00 0.00 42.34 1.40
838 1289 3.590824 CCCCCTCGCAATGTTGTC 58.409 61.111 0.00 0.00 0.00 3.18
856 1307 1.606668 TCTCACAATTCGGCAACAACC 59.393 47.619 0.00 0.00 0.00 3.77
862 1313 0.601057 TCGAGTCTCACAATTCGGCA 59.399 50.000 0.00 0.00 34.08 5.69
923 1390 1.329913 GCGGGATTGGGGATTTTGCT 61.330 55.000 0.00 0.00 0.00 3.91
1043 1510 1.421646 GGAGAGAGAGGGAGAGAGAGG 59.578 61.905 0.00 0.00 0.00 3.69
1045 1512 1.010793 AGGGAGAGAGAGGGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
1046 1513 1.421646 GAGGGAGAGAGAGGGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
1047 1514 1.518367 GAGGGAGAGAGAGGGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
1048 1515 0.478507 GGAGGGAGAGAGAGGGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
1049 1516 0.996762 GGGAGGGAGAGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
1050 1517 0.998945 AGGGAGGGAGAGAGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
1051 1518 0.996762 GAGGGAGGGAGAGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
1052 1519 1.541672 GAGGGAGGGAGAGAGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
1053 1520 0.998945 AGGAGGGAGGGAGAGAGAGG 60.999 65.000 0.00 0.00 0.00 3.69
1054 1521 0.478507 GAGGAGGGAGGGAGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
1055 1522 1.349542 CGAGGAGGGAGGGAGAGAGA 61.350 65.000 0.00 0.00 0.00 3.10
1056 1523 1.150536 CGAGGAGGGAGGGAGAGAG 59.849 68.421 0.00 0.00 0.00 3.20
1057 1524 0.327287 TACGAGGAGGGAGGGAGAGA 60.327 60.000 0.00 0.00 0.00 3.10
1058 1525 0.179012 GTACGAGGAGGGAGGGAGAG 60.179 65.000 0.00 0.00 0.00 3.20
1059 1526 1.643475 GGTACGAGGAGGGAGGGAGA 61.643 65.000 0.00 0.00 0.00 3.71
1060 1527 1.152715 GGTACGAGGAGGGAGGGAG 60.153 68.421 0.00 0.00 0.00 4.30
1061 1528 3.013631 GGTACGAGGAGGGAGGGA 58.986 66.667 0.00 0.00 0.00 4.20
1143 1613 0.598065 CGCCCCAGAGGAAAAACAAG 59.402 55.000 0.00 0.00 38.24 3.16
1146 1616 0.323451 ATCCGCCCCAGAGGAAAAAC 60.323 55.000 0.00 0.00 45.90 2.43
1148 1618 0.034477 GAATCCGCCCCAGAGGAAAA 60.034 55.000 0.00 0.00 45.90 2.29
1153 1623 2.202932 CACGAATCCGCCCCAGAG 60.203 66.667 0.00 0.00 39.95 3.35
1161 1631 0.027194 CATCTTGCTGCACGAATCCG 59.973 55.000 12.99 0.00 42.50 4.18
1249 1720 4.671766 CGGCAGGATAACAAGTAAACAAGC 60.672 45.833 0.00 0.00 0.00 4.01
1261 1732 0.378610 GAAGCTTGCGGCAGGATAAC 59.621 55.000 16.93 4.12 44.79 1.89
1285 1756 0.316204 ACGAACGGAACCTGACGAAT 59.684 50.000 0.00 0.00 0.00 3.34
1291 1762 3.991773 TGAAAGAATACGAACGGAACCTG 59.008 43.478 0.00 0.00 0.00 4.00
1322 1793 2.695359 GACATCTAGGGCAAACAACGA 58.305 47.619 0.00 0.00 0.00 3.85
1384 1855 1.197721 GAACAAACAGACTGCCATCCG 59.802 52.381 1.25 0.00 0.00 4.18
1390 1861 2.187351 TTTGCGAACAAACAGACTGC 57.813 45.000 1.25 0.00 40.84 4.40
1413 1884 3.666902 CGACGATCCAACCAAATCACAAC 60.667 47.826 0.00 0.00 0.00 3.32
1435 1945 2.939460 AACAATTCGCATGCCCTAAC 57.061 45.000 13.15 0.00 0.00 2.34
1456 1966 1.296056 AACTGCAACGCCGTGTATCC 61.296 55.000 0.00 0.00 0.00 2.59
1488 1998 2.258109 ACAGAACTTCCAGGTCTACCC 58.742 52.381 0.00 0.00 41.10 3.69
1492 2002 4.168101 TCCATAACAGAACTTCCAGGTCT 58.832 43.478 0.00 0.00 44.62 3.85
1496 2006 5.413309 AGACTCCATAACAGAACTTCCAG 57.587 43.478 0.00 0.00 0.00 3.86
1500 2010 7.112779 CCCAAATAGACTCCATAACAGAACTT 58.887 38.462 0.00 0.00 0.00 2.66
1504 2014 7.130099 TCTACCCAAATAGACTCCATAACAGA 58.870 38.462 0.00 0.00 0.00 3.41
1530 2040 8.791327 ATTTTCCAACAAACAATTCACTTCTT 57.209 26.923 0.00 0.00 0.00 2.52
1644 2154 3.322541 TGGAAATCGGATATAGAACGCCA 59.677 43.478 0.00 0.00 0.00 5.69
1666 2176 2.662857 CGATGCATGACGGCGGAT 60.663 61.111 13.24 0.00 36.28 4.18
1668 2178 3.630148 GACGATGCATGACGGCGG 61.630 66.667 13.24 0.00 36.28 6.13
1742 2252 4.469552 TGTACATACGACAGTTTCTCGTG 58.530 43.478 3.79 0.00 44.01 4.35
1752 2262 4.746535 ATCCCACAATGTACATACGACA 57.253 40.909 9.21 0.00 0.00 4.35
1827 2337 5.302360 TCAGTTGTGGAACGCTTTAACTAT 58.698 37.500 0.00 0.00 42.39 2.12
1896 2406 7.599630 TCAAAAATATCGTAAAGGTTAGCGT 57.400 32.000 0.00 0.00 0.00 5.07
1941 2451 3.273434 GCTAACTCATCATCAAGCACCA 58.727 45.455 0.00 0.00 0.00 4.17
2015 2525 9.683069 AAGAAACAAGCAAATCAATTAGTAGTG 57.317 29.630 0.00 0.00 0.00 2.74
2016 2526 9.683069 CAAGAAACAAGCAAATCAATTAGTAGT 57.317 29.630 0.00 0.00 0.00 2.73
2036 2546 1.493772 CGTACCTGCACGTCAAGAAA 58.506 50.000 0.00 0.00 37.16 2.52
2202 2712 0.692476 AGTGTACCTGCTTGCCATCA 59.308 50.000 0.00 0.00 0.00 3.07
2222 2732 2.550978 CAGCAGTAATAGGAACCACGG 58.449 52.381 0.00 0.00 0.00 4.94
2224 2734 3.906720 TCCAGCAGTAATAGGAACCAC 57.093 47.619 0.00 0.00 0.00 4.16
2267 2777 3.940209 AATGCAAGGAAAAGCGATGAA 57.060 38.095 0.00 0.00 0.00 2.57
2393 2903 1.146982 TGAAACTGGGGGCTTTAAGCT 59.853 47.619 16.89 0.00 41.99 3.74
2855 3365 7.396419 CCGTACTAATTATTAGTGTGTGTTGC 58.604 38.462 23.33 2.25 45.58 4.17
2899 3409 4.681074 TCAGGCGAATATGGTGTGATTA 57.319 40.909 0.00 0.00 0.00 1.75
2935 3445 0.597637 AGAACACAACTGGCGACTCG 60.598 55.000 0.00 0.00 0.00 4.18
3171 3681 2.814097 CGGGTGATTTATAGGGGGCAAG 60.814 54.545 0.00 0.00 0.00 4.01
3235 3745 0.534412 AGCACTACTGTAGCTGCCAG 59.466 55.000 25.08 12.27 37.20 4.85
3236 3746 0.976641 AAGCACTACTGTAGCTGCCA 59.023 50.000 25.08 0.00 38.86 4.92
3237 3747 2.961526 TAAGCACTACTGTAGCTGCC 57.038 50.000 25.08 14.91 38.86 4.85
3238 3748 3.786635 ACATAAGCACTACTGTAGCTGC 58.213 45.455 23.09 23.09 38.86 5.25
3239 3749 4.806247 GGAACATAAGCACTACTGTAGCTG 59.194 45.833 14.55 12.38 38.86 4.24
3240 3750 4.712337 AGGAACATAAGCACTACTGTAGCT 59.288 41.667 14.55 5.30 41.03 3.32
3241 3751 4.806247 CAGGAACATAAGCACTACTGTAGC 59.194 45.833 14.55 2.93 0.00 3.58
3242 3752 5.105310 ACCAGGAACATAAGCACTACTGTAG 60.105 44.000 13.13 13.13 0.00 2.74
3243 3753 4.775780 ACCAGGAACATAAGCACTACTGTA 59.224 41.667 0.00 0.00 0.00 2.74
3244 3754 3.583086 ACCAGGAACATAAGCACTACTGT 59.417 43.478 0.00 0.00 0.00 3.55
3245 3755 3.935203 CACCAGGAACATAAGCACTACTG 59.065 47.826 0.00 0.00 0.00 2.74
3246 3756 3.838317 TCACCAGGAACATAAGCACTACT 59.162 43.478 0.00 0.00 0.00 2.57
3247 3757 3.933332 GTCACCAGGAACATAAGCACTAC 59.067 47.826 0.00 0.00 0.00 2.73
3248 3758 3.838317 AGTCACCAGGAACATAAGCACTA 59.162 43.478 0.00 0.00 0.00 2.74
3249 3759 2.639839 AGTCACCAGGAACATAAGCACT 59.360 45.455 0.00 0.00 0.00 4.40
3250 3760 3.059352 AGTCACCAGGAACATAAGCAC 57.941 47.619 0.00 0.00 0.00 4.40
3251 3761 5.661312 ACTATAGTCACCAGGAACATAAGCA 59.339 40.000 0.00 0.00 0.00 3.91
3252 3762 6.163135 ACTATAGTCACCAGGAACATAAGC 57.837 41.667 0.00 0.00 0.00 3.09
3253 3763 7.371936 GCTACTATAGTCACCAGGAACATAAG 58.628 42.308 9.12 0.00 0.00 1.73
3254 3764 6.016527 CGCTACTATAGTCACCAGGAACATAA 60.017 42.308 9.12 0.00 0.00 1.90
3255 3765 5.472478 CGCTACTATAGTCACCAGGAACATA 59.528 44.000 9.12 0.00 0.00 2.29
3256 3766 4.278669 CGCTACTATAGTCACCAGGAACAT 59.721 45.833 9.12 0.00 0.00 2.71
3257 3767 3.630769 CGCTACTATAGTCACCAGGAACA 59.369 47.826 9.12 0.00 0.00 3.18
3258 3768 3.004524 CCGCTACTATAGTCACCAGGAAC 59.995 52.174 9.12 0.00 0.00 3.62
3259 3769 3.220110 CCGCTACTATAGTCACCAGGAA 58.780 50.000 9.12 0.00 0.00 3.36
3260 3770 2.860009 CCGCTACTATAGTCACCAGGA 58.140 52.381 9.12 0.00 0.00 3.86
3261 3771 1.269998 GCCGCTACTATAGTCACCAGG 59.730 57.143 9.12 8.31 0.00 4.45
3474 4107 2.200081 AGCACCATAGAGTCCAACCAT 58.800 47.619 0.00 0.00 0.00 3.55
3478 4111 2.398588 CCCTAGCACCATAGAGTCCAA 58.601 52.381 0.00 0.00 0.00 3.53
3631 4264 4.910458 ACCATGGAGTAGCAAACTAAGT 57.090 40.909 21.47 0.00 39.07 2.24
3704 4337 9.832445 ACAAGTCTTGAGTAAGTCTAAATTTCA 57.168 29.630 19.53 0.00 32.33 2.69
3706 4339 8.560374 GCACAAGTCTTGAGTAAGTCTAAATTT 58.440 33.333 19.53 0.00 32.33 1.82
3707 4340 7.715249 TGCACAAGTCTTGAGTAAGTCTAAATT 59.285 33.333 19.53 0.00 32.33 1.82
3708 4341 7.217200 TGCACAAGTCTTGAGTAAGTCTAAAT 58.783 34.615 19.53 0.00 32.33 1.40
3709 4342 6.578944 TGCACAAGTCTTGAGTAAGTCTAAA 58.421 36.000 19.53 0.00 32.33 1.85
3710 4343 6.156748 TGCACAAGTCTTGAGTAAGTCTAA 57.843 37.500 19.53 0.00 32.33 2.10
3711 4344 5.784578 TGCACAAGTCTTGAGTAAGTCTA 57.215 39.130 19.53 0.00 32.33 2.59
3712 4345 4.672587 TGCACAAGTCTTGAGTAAGTCT 57.327 40.909 19.53 0.00 34.46 3.24
3713 4346 4.752101 ACATGCACAAGTCTTGAGTAAGTC 59.248 41.667 19.53 0.00 35.38 3.01
3714 4347 4.708177 ACATGCACAAGTCTTGAGTAAGT 58.292 39.130 19.53 10.85 35.38 2.24
3715 4348 5.679734 AACATGCACAAGTCTTGAGTAAG 57.320 39.130 19.53 10.23 35.16 2.34
3716 4349 5.822519 AGAAACATGCACAAGTCTTGAGTAA 59.177 36.000 19.53 4.99 0.00 2.24
3717 4350 5.368145 AGAAACATGCACAAGTCTTGAGTA 58.632 37.500 19.53 11.23 0.00 2.59
3718 4351 4.202441 AGAAACATGCACAAGTCTTGAGT 58.798 39.130 19.53 6.58 0.00 3.41
3719 4352 4.825546 AGAAACATGCACAAGTCTTGAG 57.174 40.909 19.53 12.40 0.00 3.02
3720 4353 5.581126 AAAGAAACATGCACAAGTCTTGA 57.419 34.783 19.53 0.00 0.00 3.02
3721 4354 4.438797 CGAAAGAAACATGCACAAGTCTTG 59.561 41.667 11.17 11.17 0.00 3.02
3722 4355 4.498009 CCGAAAGAAACATGCACAAGTCTT 60.498 41.667 0.00 0.00 0.00 3.01
3723 4356 3.003689 CCGAAAGAAACATGCACAAGTCT 59.996 43.478 0.00 0.00 0.00 3.24
3724 4357 3.243068 ACCGAAAGAAACATGCACAAGTC 60.243 43.478 0.00 0.00 0.00 3.01
3771 4404 2.287915 AGCAAAACCGATATAGCAAGCG 59.712 45.455 0.00 0.00 0.00 4.68
3797 4430 5.123027 GCAACTTCCAAATCAACAACCAAAA 59.877 36.000 0.00 0.00 0.00 2.44
3843 4476 7.201548 GCAATTGAAAATTGTGATGGTGGATAC 60.202 37.037 10.34 0.00 0.00 2.24
3855 4488 9.193806 ACTATAGGATCAGCAATTGAAAATTGT 57.806 29.630 10.34 0.00 39.77 2.71
3858 4491 7.504911 AGCACTATAGGATCAGCAATTGAAAAT 59.495 33.333 10.34 0.00 39.77 1.82
3869 4502 5.336372 GCAACCTAGAGCACTATAGGATCAG 60.336 48.000 22.05 10.86 45.03 2.90
3893 4526 8.937634 CCAAAGAAGGGAAATTAAATGATCAG 57.062 34.615 0.09 0.00 0.00 2.90
3924 4557 9.125026 AGCTTATTACAAGAAAGGACCATAATG 57.875 33.333 0.00 0.00 0.00 1.90
3939 4572 7.886446 ACAAAGGCCTAAACTAGCTTATTACAA 59.114 33.333 5.16 0.00 0.00 2.41
4016 4654 7.234371 TCCTACAGAATTCCTATGAGATTCCTG 59.766 40.741 0.65 0.00 0.00 3.86
4073 4742 5.722021 AAAGTTACCAATGCTACAAAGGG 57.278 39.130 0.00 0.00 0.00 3.95
4077 4746 7.708752 CCTTTGAAAAAGTTACCAATGCTACAA 59.291 33.333 0.00 0.00 0.00 2.41
4167 4836 3.093172 GGAAGAGGGCTGAGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
4201 4870 0.600782 CAATGCAACCAAGGGCACAC 60.601 55.000 0.00 0.00 43.75 3.82
4202 4871 1.047596 ACAATGCAACCAAGGGCACA 61.048 50.000 0.00 0.00 43.75 4.57
4280 4949 8.743085 ACACACATCAGAGCATAAGAAATAAT 57.257 30.769 0.00 0.00 0.00 1.28
4312 4986 2.907392 GACGTGAAGAAGTGCGTACTAC 59.093 50.000 6.58 0.00 37.71 2.73
4315 4989 2.047679 AGACGTGAAGAAGTGCGTAC 57.952 50.000 0.00 0.00 37.71 3.67
4318 4992 1.858458 TGAAAGACGTGAAGAAGTGCG 59.142 47.619 0.00 0.00 0.00 5.34
4346 5020 4.154195 GCGGAGACATTTAGTTCACAACAT 59.846 41.667 0.00 0.00 0.00 2.71
4349 5023 4.002906 AGCGGAGACATTTAGTTCACAA 57.997 40.909 0.00 0.00 0.00 3.33
4414 5089 2.897271 TTGCCAGGGCTTCTATCAAA 57.103 45.000 12.19 0.00 42.51 2.69
4441 5118 8.854117 GGATGATCATGCTTCTATTAACCTTTT 58.146 33.333 19.05 0.00 0.00 2.27
4442 5119 8.000709 TGGATGATCATGCTTCTATTAACCTTT 58.999 33.333 25.23 0.00 0.00 3.11
4443 5120 7.520798 TGGATGATCATGCTTCTATTAACCTT 58.479 34.615 25.23 0.00 0.00 3.50
4444 5121 7.083062 TGGATGATCATGCTTCTATTAACCT 57.917 36.000 25.23 0.00 0.00 3.50
4445 5122 7.609146 TCATGGATGATCATGCTTCTATTAACC 59.391 37.037 25.23 10.90 42.96 2.85
4459 5136 5.651612 ATACTTTGGGTCATGGATGATCA 57.348 39.130 0.00 0.00 39.68 2.92
4495 5181 3.239449 TCTTTGGTGAGAGGCTTCTACA 58.761 45.455 0.00 0.00 32.53 2.74
4505 5191 2.902608 TCCTAGGCTTCTTTGGTGAGA 58.097 47.619 2.96 0.00 0.00 3.27
4506 5192 3.539604 CATCCTAGGCTTCTTTGGTGAG 58.460 50.000 2.96 0.00 0.00 3.51
4521 5207 2.542550 TCGTGGTTTTCTCCCATCCTA 58.457 47.619 0.00 0.00 33.76 2.94
4522 5208 1.358152 TCGTGGTTTTCTCCCATCCT 58.642 50.000 0.00 0.00 33.76 3.24
4523 5209 2.084546 CTTCGTGGTTTTCTCCCATCC 58.915 52.381 0.00 0.00 33.76 3.51
4524 5210 2.742589 GACTTCGTGGTTTTCTCCCATC 59.257 50.000 0.00 0.00 33.76 3.51
4525 5211 2.779506 GACTTCGTGGTTTTCTCCCAT 58.220 47.619 0.00 0.00 33.76 4.00



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.