Multiple sequence alignment - TraesCS6A01G290800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G290800 chr6A 100.000 3324 0 0 1 3324 522228481 522225158 0.000000e+00 6139
1 TraesCS6A01G290800 chr6B 92.141 2214 78 34 1168 3314 568258885 568256701 0.000000e+00 3037
2 TraesCS6A01G290800 chr6B 92.522 1003 61 10 174 1168 568259913 568258917 0.000000e+00 1424
3 TraesCS6A01G290800 chr6D 94.435 1761 63 13 1168 2912 380800566 380798825 0.000000e+00 2676
4 TraesCS6A01G290800 chr6D 94.450 1009 37 11 174 1168 380801602 380800599 0.000000e+00 1535
5 TraesCS6A01G290800 chr6D 88.235 340 25 9 2983 3314 380797301 380796969 3.110000e-105 392
6 TraesCS6A01G290800 chr4B 83.495 206 32 2 1467 1671 571049182 571048978 1.220000e-44 191
7 TraesCS6A01G290800 chr4B 80.263 228 39 5 1455 1679 593422892 593423116 2.050000e-37 167
8 TraesCS6A01G290800 chr4A 83.495 206 32 2 1467 1671 11297792 11297996 1.220000e-44 191
9 TraesCS6A01G290800 chr4A 79.913 229 38 7 1455 1679 678872423 678872647 9.540000e-36 161
10 TraesCS6A01G290800 chr4D 82.524 206 34 2 1467 1671 457075140 457075344 2.630000e-41 180
11 TraesCS6A01G290800 chr4D 79.386 228 41 5 1455 1679 471961679 471961903 4.440000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G290800 chr6A 522225158 522228481 3323 True 6139.000000 6139 100.000000 1 3324 1 chr6A.!!$R1 3323
1 TraesCS6A01G290800 chr6B 568256701 568259913 3212 True 2230.500000 3037 92.331500 174 3314 2 chr6B.!!$R1 3140
2 TraesCS6A01G290800 chr6D 380796969 380801602 4633 True 1534.333333 2676 92.373333 174 3314 3 chr6D.!!$R1 3140

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.098376 GCGAGGTCTCACGATACGTT 59.902 55.0 0.0 0.0 38.32 3.99 F
1365 1416 0.321564 CCGGAGCAGGTGACAATTCA 60.322 55.0 0.0 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1776 1834 0.249868 CACCTGACGCCACAAAGAGA 60.250 55.0 0.0 0.0 0.0 3.10 R
2929 4450 0.603975 GAGATAGGTTGCCGCCCATC 60.604 60.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.878667 AGAATAAACCTAAACTTAGAAGAGAGC 57.121 33.333 0.00 0.00 32.47 4.09
33 34 9.878667 GAATAAACCTAAACTTAGAAGAGAGCT 57.121 33.333 0.00 0.00 32.47 4.09
34 35 9.660180 AATAAACCTAAACTTAGAAGAGAGCTG 57.340 33.333 0.00 0.00 32.47 4.24
35 36 6.919775 AACCTAAACTTAGAAGAGAGCTGA 57.080 37.500 0.00 0.00 32.47 4.26
36 37 6.275494 ACCTAAACTTAGAAGAGAGCTGAC 57.725 41.667 0.00 0.00 32.47 3.51
37 38 5.186215 ACCTAAACTTAGAAGAGAGCTGACC 59.814 44.000 0.00 0.00 32.47 4.02
38 39 4.545208 AAACTTAGAAGAGAGCTGACCC 57.455 45.455 0.00 0.00 0.00 4.46
39 40 2.462723 ACTTAGAAGAGAGCTGACCCC 58.537 52.381 0.00 0.00 0.00 4.95
40 41 2.043801 ACTTAGAAGAGAGCTGACCCCT 59.956 50.000 0.00 0.00 0.00 4.79
41 42 3.269906 ACTTAGAAGAGAGCTGACCCCTA 59.730 47.826 0.00 0.00 0.00 3.53
42 43 2.452600 AGAAGAGAGCTGACCCCTAG 57.547 55.000 0.00 0.00 0.00 3.02
43 44 1.643811 AGAAGAGAGCTGACCCCTAGT 59.356 52.381 0.00 0.00 0.00 2.57
44 45 2.028876 GAAGAGAGCTGACCCCTAGTC 58.971 57.143 0.00 0.00 46.51 2.59
45 46 0.260523 AGAGAGCTGACCCCTAGTCC 59.739 60.000 0.00 0.00 45.68 3.85
46 47 0.260523 GAGAGCTGACCCCTAGTCCT 59.739 60.000 0.00 0.00 45.68 3.85
47 48 1.495574 GAGAGCTGACCCCTAGTCCTA 59.504 57.143 0.00 0.00 45.68 2.94
48 49 1.215924 AGAGCTGACCCCTAGTCCTAC 59.784 57.143 0.00 0.00 45.68 3.18
49 50 1.215924 GAGCTGACCCCTAGTCCTACT 59.784 57.143 0.00 0.00 45.68 2.57
50 51 1.063567 AGCTGACCCCTAGTCCTACTG 60.064 57.143 0.00 0.00 45.68 2.74
51 52 1.063867 GCTGACCCCTAGTCCTACTGA 60.064 57.143 0.00 0.00 45.68 3.41
52 53 2.425102 GCTGACCCCTAGTCCTACTGAT 60.425 54.545 0.00 0.00 45.68 2.90
53 54 3.492337 CTGACCCCTAGTCCTACTGATC 58.508 54.545 0.00 0.00 45.68 2.92
54 55 2.158652 TGACCCCTAGTCCTACTGATCG 60.159 54.545 0.00 0.00 45.68 3.69
55 56 1.249407 CCCCTAGTCCTACTGATCGC 58.751 60.000 0.00 0.00 0.00 4.58
56 57 1.249407 CCCTAGTCCTACTGATCGCC 58.751 60.000 0.00 0.00 0.00 5.54
57 58 0.875728 CCTAGTCCTACTGATCGCCG 59.124 60.000 0.00 0.00 0.00 6.46
58 59 0.875728 CTAGTCCTACTGATCGCCGG 59.124 60.000 0.00 0.00 0.00 6.13
59 60 1.170919 TAGTCCTACTGATCGCCGGC 61.171 60.000 19.07 19.07 0.00 6.13
60 61 2.441348 TCCTACTGATCGCCGGCA 60.441 61.111 28.98 14.46 0.00 5.69
61 62 2.055633 TCCTACTGATCGCCGGCAA 61.056 57.895 28.98 9.13 0.00 4.52
62 63 1.153449 CCTACTGATCGCCGGCAAA 60.153 57.895 28.98 14.85 0.00 3.68
63 64 1.154205 CCTACTGATCGCCGGCAAAG 61.154 60.000 28.98 19.09 0.00 2.77
64 65 1.153449 TACTGATCGCCGGCAAAGG 60.153 57.895 28.98 10.38 0.00 3.11
65 66 1.609635 TACTGATCGCCGGCAAAGGA 61.610 55.000 28.98 16.22 0.00 3.36
66 67 2.125147 TGATCGCCGGCAAAGGAG 60.125 61.111 28.98 9.08 0.00 3.69
67 68 2.897350 GATCGCCGGCAAAGGAGG 60.897 66.667 28.98 8.23 0.00 4.30
68 69 4.489771 ATCGCCGGCAAAGGAGGG 62.490 66.667 28.98 7.38 0.00 4.30
72 73 3.657350 CCGGCAAAGGAGGGGGAA 61.657 66.667 0.00 0.00 0.00 3.97
73 74 2.438795 CGGCAAAGGAGGGGGAAA 59.561 61.111 0.00 0.00 0.00 3.13
74 75 1.228737 CGGCAAAGGAGGGGGAAAA 60.229 57.895 0.00 0.00 0.00 2.29
75 76 1.250840 CGGCAAAGGAGGGGGAAAAG 61.251 60.000 0.00 0.00 0.00 2.27
76 77 0.904865 GGCAAAGGAGGGGGAAAAGG 60.905 60.000 0.00 0.00 0.00 3.11
77 78 0.904865 GCAAAGGAGGGGGAAAAGGG 60.905 60.000 0.00 0.00 0.00 3.95
78 79 0.252239 CAAAGGAGGGGGAAAAGGGG 60.252 60.000 0.00 0.00 0.00 4.79
79 80 0.405852 AAAGGAGGGGGAAAAGGGGA 60.406 55.000 0.00 0.00 0.00 4.81
80 81 0.851332 AAGGAGGGGGAAAAGGGGAG 60.851 60.000 0.00 0.00 0.00 4.30
81 82 2.317378 GGAGGGGGAAAAGGGGAGG 61.317 68.421 0.00 0.00 0.00 4.30
82 83 2.204464 AGGGGGAAAAGGGGAGGG 60.204 66.667 0.00 0.00 0.00 4.30
83 84 3.356212 GGGGGAAAAGGGGAGGGG 61.356 72.222 0.00 0.00 0.00 4.79
84 85 4.075793 GGGGAAAAGGGGAGGGGC 62.076 72.222 0.00 0.00 0.00 5.80
85 86 4.075793 GGGAAAAGGGGAGGGGCC 62.076 72.222 0.00 0.00 0.00 5.80
86 87 4.442454 GGAAAAGGGGAGGGGCCG 62.442 72.222 0.00 0.00 37.63 6.13
87 88 3.335729 GAAAAGGGGAGGGGCCGA 61.336 66.667 0.00 0.00 37.63 5.54
88 89 3.640257 GAAAAGGGGAGGGGCCGAC 62.640 68.421 0.00 0.00 37.63 4.79
96 97 4.779733 AGGGGCCGACGGTGAGAT 62.780 66.667 16.73 0.00 0.00 2.75
97 98 3.782443 GGGGCCGACGGTGAGATT 61.782 66.667 16.73 0.00 0.00 2.40
98 99 2.267961 GGGCCGACGGTGAGATTT 59.732 61.111 16.73 0.00 0.00 2.17
99 100 2.106683 GGGCCGACGGTGAGATTTG 61.107 63.158 16.73 0.00 0.00 2.32
100 101 2.106683 GGCCGACGGTGAGATTTGG 61.107 63.158 16.73 0.00 0.00 3.28
101 102 1.375523 GCCGACGGTGAGATTTGGT 60.376 57.895 16.73 0.00 0.00 3.67
102 103 1.635663 GCCGACGGTGAGATTTGGTG 61.636 60.000 16.73 0.00 0.00 4.17
103 104 0.320421 CCGACGGTGAGATTTGGTGT 60.320 55.000 5.48 0.00 0.00 4.16
104 105 0.790207 CGACGGTGAGATTTGGTGTG 59.210 55.000 0.00 0.00 0.00 3.82
105 106 1.604438 CGACGGTGAGATTTGGTGTGA 60.604 52.381 0.00 0.00 0.00 3.58
106 107 2.069273 GACGGTGAGATTTGGTGTGAG 58.931 52.381 0.00 0.00 0.00 3.51
107 108 1.270839 ACGGTGAGATTTGGTGTGAGG 60.271 52.381 0.00 0.00 0.00 3.86
108 109 1.826385 GGTGAGATTTGGTGTGAGGG 58.174 55.000 0.00 0.00 0.00 4.30
109 110 1.168714 GTGAGATTTGGTGTGAGGGC 58.831 55.000 0.00 0.00 0.00 5.19
110 111 0.770499 TGAGATTTGGTGTGAGGGCA 59.230 50.000 0.00 0.00 0.00 5.36
111 112 1.144708 TGAGATTTGGTGTGAGGGCAA 59.855 47.619 0.00 0.00 0.00 4.52
112 113 1.815003 GAGATTTGGTGTGAGGGCAAG 59.185 52.381 0.00 0.00 0.00 4.01
113 114 1.145738 AGATTTGGTGTGAGGGCAAGT 59.854 47.619 0.00 0.00 0.00 3.16
114 115 1.270550 GATTTGGTGTGAGGGCAAGTG 59.729 52.381 0.00 0.00 0.00 3.16
115 116 1.391157 TTTGGTGTGAGGGCAAGTGC 61.391 55.000 0.00 0.00 41.14 4.40
141 142 4.194720 GCGGCGAGGTCTCACGAT 62.195 66.667 12.98 0.00 33.36 3.73
142 143 2.831366 GCGGCGAGGTCTCACGATA 61.831 63.158 12.98 0.00 33.36 2.92
143 144 1.009900 CGGCGAGGTCTCACGATAC 60.010 63.158 0.00 0.00 33.36 2.24
144 145 1.009900 GGCGAGGTCTCACGATACG 60.010 63.158 0.00 0.00 0.00 3.06
145 146 1.712977 GGCGAGGTCTCACGATACGT 61.713 60.000 0.00 0.00 42.36 3.57
146 147 0.098376 GCGAGGTCTCACGATACGTT 59.902 55.000 0.00 0.00 38.32 3.99
147 148 1.811428 CGAGGTCTCACGATACGTTG 58.189 55.000 0.00 0.00 38.32 4.10
148 149 1.129998 CGAGGTCTCACGATACGTTGT 59.870 52.381 0.00 0.00 38.32 3.32
149 150 2.413765 CGAGGTCTCACGATACGTTGTT 60.414 50.000 0.00 0.00 38.32 2.83
150 151 3.572584 GAGGTCTCACGATACGTTGTTT 58.427 45.455 0.00 0.00 38.32 2.83
151 152 3.985925 GAGGTCTCACGATACGTTGTTTT 59.014 43.478 0.00 0.00 38.32 2.43
152 153 3.739300 AGGTCTCACGATACGTTGTTTTG 59.261 43.478 0.00 0.00 38.32 2.44
153 154 3.492011 GGTCTCACGATACGTTGTTTTGT 59.508 43.478 0.00 0.00 38.32 2.83
154 155 4.442705 GTCTCACGATACGTTGTTTTGTG 58.557 43.478 0.00 0.00 38.32 3.33
155 156 4.207635 GTCTCACGATACGTTGTTTTGTGA 59.792 41.667 0.00 9.22 38.32 3.58
156 157 4.804665 TCTCACGATACGTTGTTTTGTGAA 59.195 37.500 0.00 2.39 37.41 3.18
157 158 5.291371 TCTCACGATACGTTGTTTTGTGAAA 59.709 36.000 0.00 0.00 37.41 2.69
158 159 6.018588 TCTCACGATACGTTGTTTTGTGAAAT 60.019 34.615 0.00 0.00 37.41 2.17
159 160 7.169476 TCTCACGATACGTTGTTTTGTGAAATA 59.831 33.333 0.00 0.37 37.41 1.40
160 161 7.064674 TCACGATACGTTGTTTTGTGAAATAC 58.935 34.615 0.00 0.00 38.32 1.89
161 162 6.846786 CACGATACGTTGTTTTGTGAAATACA 59.153 34.615 0.00 0.00 38.32 2.29
162 163 7.057903 CACGATACGTTGTTTTGTGAAATACAG 59.942 37.037 0.00 0.00 38.20 2.74
163 164 7.067116 CGATACGTTGTTTTGTGAAATACAGT 58.933 34.615 0.00 0.00 41.10 3.55
164 165 8.215792 CGATACGTTGTTTTGTGAAATACAGTA 58.784 33.333 0.00 0.00 41.10 2.74
165 166 9.309796 GATACGTTGTTTTGTGAAATACAGTAC 57.690 33.333 0.00 0.00 41.10 2.73
166 167 7.074507 ACGTTGTTTTGTGAAATACAGTACA 57.925 32.000 0.00 0.00 41.10 2.90
167 168 6.962678 ACGTTGTTTTGTGAAATACAGTACAC 59.037 34.615 0.00 0.00 41.10 2.90
168 169 6.137926 CGTTGTTTTGTGAAATACAGTACACG 59.862 38.462 0.00 0.00 41.10 4.49
169 170 6.905544 TGTTTTGTGAAATACAGTACACGA 57.094 33.333 0.00 0.00 41.10 4.35
170 171 7.304919 TGTTTTGTGAAATACAGTACACGAA 57.695 32.000 0.00 0.00 41.10 3.85
171 172 7.181418 TGTTTTGTGAAATACAGTACACGAAC 58.819 34.615 0.00 0.00 41.10 3.95
172 173 7.064847 TGTTTTGTGAAATACAGTACACGAACT 59.935 33.333 1.10 0.00 41.10 3.01
192 193 4.141287 ACTCATGGTTCGATCCACAAAAA 58.859 39.130 17.33 1.51 40.51 1.94
218 221 6.860080 TCTTGGTAGTATACAGTCTTTTCCG 58.140 40.000 5.50 0.00 45.43 4.30
225 228 0.685660 ACAGTCTTTTCCGACCTCCC 59.314 55.000 0.00 0.00 34.46 4.30
236 240 0.613853 CGACCTCCCCACCTGTAAGA 60.614 60.000 0.00 0.00 34.07 2.10
246 250 3.270877 CCACCTGTAAGATCTTTTCCGG 58.729 50.000 14.36 14.43 34.07 5.14
252 256 5.105310 CCTGTAAGATCTTTTCCGGAGAAGA 60.105 44.000 32.55 32.55 34.07 2.87
258 262 6.169800 AGATCTTTTCCGGAGAAGAGAAAAG 58.830 40.000 33.13 23.78 44.01 2.27
262 266 3.170991 TCCGGAGAAGAGAAAAGGAGA 57.829 47.619 0.00 0.00 0.00 3.71
266 270 4.323104 CCGGAGAAGAGAAAAGGAGAACAT 60.323 45.833 0.00 0.00 0.00 2.71
268 272 6.398918 CGGAGAAGAGAAAAGGAGAACATTA 58.601 40.000 0.00 0.00 0.00 1.90
421 433 2.556459 CGTCTCGATCCTCCGCCAT 61.556 63.158 0.00 0.00 0.00 4.40
616 629 8.171164 TCAAGAAAGAGATTTCCTTTTCTTCC 57.829 34.615 9.14 0.00 34.33 3.46
620 633 5.590976 AGAGATTTCCTTTTCTTCCTGGT 57.409 39.130 0.00 0.00 0.00 4.00
695 709 2.440430 TCTTCTCCGGCGAGAGGG 60.440 66.667 20.15 14.77 45.86 4.30
705 719 1.152715 GCGAGAGGGGTAGCTAGGT 60.153 63.158 0.00 0.00 0.00 3.08
713 727 0.618981 GGGTAGCTAGGTTTGCCTGT 59.381 55.000 0.00 0.00 46.47 4.00
940 954 7.326305 AGCAGCTGTATATATACGTCTTTTTCG 59.674 37.037 16.64 6.36 36.06 3.46
1128 1146 7.122048 TCCATCGAGGTATCATATTCTCATCT 58.878 38.462 0.00 0.00 39.02 2.90
1294 1345 2.202919 TCGCCGGATGACATGCTG 60.203 61.111 5.05 0.00 0.00 4.41
1365 1416 0.321564 CCGGAGCAGGTGACAATTCA 60.322 55.000 0.00 0.00 0.00 2.57
1366 1417 1.522668 CGGAGCAGGTGACAATTCAA 58.477 50.000 0.00 0.00 31.90 2.69
1367 1418 1.879380 CGGAGCAGGTGACAATTCAAA 59.121 47.619 0.00 0.00 31.90 2.69
1375 1426 4.516698 CAGGTGACAATTCAAAGCTACAGT 59.483 41.667 0.00 0.00 31.90 3.55
1376 1427 5.700832 CAGGTGACAATTCAAAGCTACAGTA 59.299 40.000 0.00 0.00 31.90 2.74
1377 1428 5.701290 AGGTGACAATTCAAAGCTACAGTAC 59.299 40.000 0.00 0.00 31.90 2.73
1387 1438 6.910995 TCAAAGCTACAGTACTAGTGAAGAC 58.089 40.000 5.39 0.00 0.00 3.01
1404 1455 2.106566 AGACGATGCTCTGTTCATCCT 58.893 47.619 0.00 0.00 37.60 3.24
1415 1466 8.442632 TGCTCTGTTCATCCTAATTAATTCTG 57.557 34.615 3.39 0.00 0.00 3.02
1416 1467 8.267183 TGCTCTGTTCATCCTAATTAATTCTGA 58.733 33.333 3.39 3.14 0.00 3.27
1417 1468 8.772705 GCTCTGTTCATCCTAATTAATTCTGAG 58.227 37.037 3.39 7.63 0.00 3.35
1418 1469 9.829507 CTCTGTTCATCCTAATTAATTCTGAGT 57.170 33.333 3.39 0.00 0.00 3.41
1424 1475 9.823647 TCATCCTAATTAATTCTGAGTTCTGAC 57.176 33.333 3.39 0.00 0.00 3.51
1702 1753 1.079336 GGCTCCGGTCACAGGTAAC 60.079 63.158 0.00 0.00 0.00 2.50
1774 1832 5.197224 TGAGTTTGATTTGGGAGATCCAT 57.803 39.130 0.47 0.00 46.52 3.41
1775 1833 6.325993 TGAGTTTGATTTGGGAGATCCATA 57.674 37.500 0.47 0.00 46.52 2.74
1776 1834 6.914665 TGAGTTTGATTTGGGAGATCCATAT 58.085 36.000 0.47 0.00 46.52 1.78
2332 2409 4.492160 TGGAACTAGGCTCGCGCG 62.492 66.667 26.76 26.76 36.88 6.86
2335 2412 4.514577 AACTAGGCTCGCGCGCAT 62.515 61.111 32.61 19.23 36.88 4.73
2384 2467 5.696270 TGGAATCGATCAATTTCGGAGTATG 59.304 40.000 0.00 0.00 39.56 2.39
2565 2650 0.884704 GCACGGAGTCAAAGCCTCAA 60.885 55.000 0.00 0.00 41.61 3.02
2677 2775 0.168348 CACTACTGTACGTGCGCTCT 59.832 55.000 9.73 0.00 0.00 4.09
2691 2792 3.668656 GTGCGCTCTTGGTTTTGTATTTC 59.331 43.478 9.73 0.00 0.00 2.17
2720 2821 6.036577 TCTCCAAAAATATGAAAAGGCCAC 57.963 37.500 5.01 0.00 0.00 5.01
2778 2879 4.111916 GCATTTCCCACGTCCATAAATTG 58.888 43.478 0.00 0.00 0.00 2.32
2786 2887 5.007626 CCCACGTCCATAAATTGTGTCATAG 59.992 44.000 0.00 0.00 0.00 2.23
2792 2893 8.233868 CGTCCATAAATTGTGTCATAGTTTTCA 58.766 33.333 0.00 0.00 0.00 2.69
2929 4450 7.168972 TGAACCTTGCGAATTCAACAAAATAAG 59.831 33.333 6.22 0.00 29.56 1.73
2966 4495 8.107095 ACCTATCTCAAAGCCTATTAACAACAA 58.893 33.333 0.00 0.00 0.00 2.83
3068 4624 3.308323 GCACGGTTCAGCATTTTGAAAAA 59.692 39.130 0.00 0.00 38.69 1.94
3177 4733 2.693074 ACTTGCGGTCCAAATTGAAACT 59.307 40.909 0.00 0.00 31.94 2.66
3188 4744 7.764901 GGTCCAAATTGAAACTACTACTAGGAG 59.235 40.741 0.00 0.00 0.00 3.69
3261 4833 1.196104 TCCACCGTTGGTTAGGAGGG 61.196 60.000 0.00 0.00 44.35 4.30
3320 4892 7.614124 TTTTTACAAAAGTCTTACGTCTGGT 57.386 32.000 0.00 0.00 0.00 4.00
3321 4893 6.592798 TTTACAAAAGTCTTACGTCTGGTG 57.407 37.500 0.00 0.00 0.00 4.17
3322 4894 4.395959 ACAAAAGTCTTACGTCTGGTGA 57.604 40.909 0.00 0.00 0.00 4.02
3323 4895 4.117685 ACAAAAGTCTTACGTCTGGTGAC 58.882 43.478 0.00 0.00 39.70 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.878667 GCTCTCTTCTAAGTTTAGGTTTATTCT 57.121 33.333 0.00 0.00 0.00 2.40
7 8 9.878667 AGCTCTCTTCTAAGTTTAGGTTTATTC 57.121 33.333 0.00 0.00 0.00 1.75
8 9 9.660180 CAGCTCTCTTCTAAGTTTAGGTTTATT 57.340 33.333 0.00 0.00 0.00 1.40
9 10 9.036980 TCAGCTCTCTTCTAAGTTTAGGTTTAT 57.963 33.333 0.00 0.00 0.00 1.40
10 11 8.305317 GTCAGCTCTCTTCTAAGTTTAGGTTTA 58.695 37.037 0.00 0.00 0.00 2.01
11 12 7.156000 GTCAGCTCTCTTCTAAGTTTAGGTTT 58.844 38.462 0.00 0.00 0.00 3.27
12 13 6.295405 GGTCAGCTCTCTTCTAAGTTTAGGTT 60.295 42.308 0.00 0.00 0.00 3.50
13 14 5.186215 GGTCAGCTCTCTTCTAAGTTTAGGT 59.814 44.000 0.00 0.00 0.00 3.08
14 15 5.394773 GGGTCAGCTCTCTTCTAAGTTTAGG 60.395 48.000 0.00 0.00 0.00 2.69
15 16 5.394773 GGGGTCAGCTCTCTTCTAAGTTTAG 60.395 48.000 0.00 0.00 0.00 1.85
16 17 4.466726 GGGGTCAGCTCTCTTCTAAGTTTA 59.533 45.833 0.00 0.00 0.00 2.01
17 18 3.262151 GGGGTCAGCTCTCTTCTAAGTTT 59.738 47.826 0.00 0.00 0.00 2.66
18 19 2.835156 GGGGTCAGCTCTCTTCTAAGTT 59.165 50.000 0.00 0.00 0.00 2.66
19 20 2.043801 AGGGGTCAGCTCTCTTCTAAGT 59.956 50.000 0.00 0.00 0.00 2.24
20 21 2.745968 AGGGGTCAGCTCTCTTCTAAG 58.254 52.381 0.00 0.00 0.00 2.18
21 22 2.930109 AGGGGTCAGCTCTCTTCTAA 57.070 50.000 0.00 0.00 0.00 2.10
22 23 2.853707 ACTAGGGGTCAGCTCTCTTCTA 59.146 50.000 0.00 0.00 0.00 2.10
23 24 1.643811 ACTAGGGGTCAGCTCTCTTCT 59.356 52.381 0.00 0.00 0.00 2.85
24 25 2.028876 GACTAGGGGTCAGCTCTCTTC 58.971 57.143 0.00 0.00 43.94 2.87
25 26 1.342574 GGACTAGGGGTCAGCTCTCTT 60.343 57.143 0.00 0.00 46.16 2.85
26 27 0.260523 GGACTAGGGGTCAGCTCTCT 59.739 60.000 0.00 0.00 46.16 3.10
27 28 0.260523 AGGACTAGGGGTCAGCTCTC 59.739 60.000 0.00 0.00 46.16 3.20
28 29 1.215924 GTAGGACTAGGGGTCAGCTCT 59.784 57.143 0.00 0.00 46.16 4.09
29 30 1.215924 AGTAGGACTAGGGGTCAGCTC 59.784 57.143 0.00 0.00 46.16 4.09
30 31 1.063567 CAGTAGGACTAGGGGTCAGCT 60.064 57.143 0.00 0.00 46.16 4.24
31 32 1.063867 TCAGTAGGACTAGGGGTCAGC 60.064 57.143 0.00 0.00 46.16 4.26
32 33 3.492337 GATCAGTAGGACTAGGGGTCAG 58.508 54.545 0.00 0.00 46.16 3.51
33 34 2.158652 CGATCAGTAGGACTAGGGGTCA 60.159 54.545 0.00 0.00 46.16 4.02
34 35 2.506444 CGATCAGTAGGACTAGGGGTC 58.494 57.143 0.00 0.00 43.79 4.46
35 36 1.479021 GCGATCAGTAGGACTAGGGGT 60.479 57.143 0.00 0.00 0.00 4.95
36 37 1.249407 GCGATCAGTAGGACTAGGGG 58.751 60.000 0.00 0.00 0.00 4.79
37 38 1.249407 GGCGATCAGTAGGACTAGGG 58.751 60.000 0.00 0.00 0.00 3.53
38 39 0.875728 CGGCGATCAGTAGGACTAGG 59.124 60.000 0.00 0.00 0.00 3.02
39 40 0.875728 CCGGCGATCAGTAGGACTAG 59.124 60.000 9.30 0.00 0.00 2.57
40 41 1.170919 GCCGGCGATCAGTAGGACTA 61.171 60.000 12.58 0.00 0.00 2.59
41 42 2.491022 GCCGGCGATCAGTAGGACT 61.491 63.158 12.58 0.00 0.00 3.85
42 43 2.027751 GCCGGCGATCAGTAGGAC 59.972 66.667 12.58 0.00 0.00 3.85
43 44 1.609635 TTTGCCGGCGATCAGTAGGA 61.610 55.000 23.90 0.00 0.00 2.94
44 45 1.153449 TTTGCCGGCGATCAGTAGG 60.153 57.895 23.90 0.00 0.00 3.18
45 46 1.154205 CCTTTGCCGGCGATCAGTAG 61.154 60.000 23.90 13.69 0.00 2.57
46 47 1.153449 CCTTTGCCGGCGATCAGTA 60.153 57.895 23.90 2.93 0.00 2.74
47 48 2.436646 CCTTTGCCGGCGATCAGT 60.437 61.111 23.90 0.00 0.00 3.41
48 49 2.125147 TCCTTTGCCGGCGATCAG 60.125 61.111 23.90 15.27 0.00 2.90
49 50 2.125147 CTCCTTTGCCGGCGATCA 60.125 61.111 23.90 4.67 0.00 2.92
50 51 2.897350 CCTCCTTTGCCGGCGATC 60.897 66.667 23.90 0.00 0.00 3.69
51 52 4.489771 CCCTCCTTTGCCGGCGAT 62.490 66.667 23.90 0.00 0.00 4.58
55 56 2.723464 TTTTCCCCCTCCTTTGCCGG 62.723 60.000 0.00 0.00 0.00 6.13
56 57 1.228737 TTTTCCCCCTCCTTTGCCG 60.229 57.895 0.00 0.00 0.00 5.69
57 58 0.904865 CCTTTTCCCCCTCCTTTGCC 60.905 60.000 0.00 0.00 0.00 4.52
58 59 0.904865 CCCTTTTCCCCCTCCTTTGC 60.905 60.000 0.00 0.00 0.00 3.68
59 60 0.252239 CCCCTTTTCCCCCTCCTTTG 60.252 60.000 0.00 0.00 0.00 2.77
60 61 0.405852 TCCCCTTTTCCCCCTCCTTT 60.406 55.000 0.00 0.00 0.00 3.11
61 62 0.851332 CTCCCCTTTTCCCCCTCCTT 60.851 60.000 0.00 0.00 0.00 3.36
62 63 1.230314 CTCCCCTTTTCCCCCTCCT 60.230 63.158 0.00 0.00 0.00 3.69
63 64 2.317378 CCTCCCCTTTTCCCCCTCC 61.317 68.421 0.00 0.00 0.00 4.30
64 65 2.317378 CCCTCCCCTTTTCCCCCTC 61.317 68.421 0.00 0.00 0.00 4.30
65 66 2.204464 CCCTCCCCTTTTCCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
66 67 3.356212 CCCCTCCCCTTTTCCCCC 61.356 72.222 0.00 0.00 0.00 5.40
67 68 4.075793 GCCCCTCCCCTTTTCCCC 62.076 72.222 0.00 0.00 0.00 4.81
68 69 4.075793 GGCCCCTCCCCTTTTCCC 62.076 72.222 0.00 0.00 0.00 3.97
69 70 4.442454 CGGCCCCTCCCCTTTTCC 62.442 72.222 0.00 0.00 0.00 3.13
70 71 3.335729 TCGGCCCCTCCCCTTTTC 61.336 66.667 0.00 0.00 0.00 2.29
71 72 3.658422 GTCGGCCCCTCCCCTTTT 61.658 66.667 0.00 0.00 0.00 2.27
79 80 4.779733 ATCTCACCGTCGGCCCCT 62.780 66.667 12.28 0.00 0.00 4.79
80 81 3.325201 AAATCTCACCGTCGGCCCC 62.325 63.158 12.28 0.00 0.00 5.80
81 82 2.106683 CAAATCTCACCGTCGGCCC 61.107 63.158 12.28 0.00 0.00 5.80
82 83 2.106683 CCAAATCTCACCGTCGGCC 61.107 63.158 12.28 0.00 0.00 6.13
83 84 1.375523 ACCAAATCTCACCGTCGGC 60.376 57.895 12.28 0.00 0.00 5.54
84 85 0.320421 ACACCAAATCTCACCGTCGG 60.320 55.000 10.48 10.48 0.00 4.79
85 86 0.790207 CACACCAAATCTCACCGTCG 59.210 55.000 0.00 0.00 0.00 5.12
86 87 2.069273 CTCACACCAAATCTCACCGTC 58.931 52.381 0.00 0.00 0.00 4.79
87 88 1.270839 CCTCACACCAAATCTCACCGT 60.271 52.381 0.00 0.00 0.00 4.83
88 89 1.442769 CCTCACACCAAATCTCACCG 58.557 55.000 0.00 0.00 0.00 4.94
89 90 1.826385 CCCTCACACCAAATCTCACC 58.174 55.000 0.00 0.00 0.00 4.02
90 91 1.168714 GCCCTCACACCAAATCTCAC 58.831 55.000 0.00 0.00 0.00 3.51
91 92 0.770499 TGCCCTCACACCAAATCTCA 59.230 50.000 0.00 0.00 0.00 3.27
92 93 1.815003 CTTGCCCTCACACCAAATCTC 59.185 52.381 0.00 0.00 0.00 2.75
93 94 1.145738 ACTTGCCCTCACACCAAATCT 59.854 47.619 0.00 0.00 0.00 2.40
94 95 1.270550 CACTTGCCCTCACACCAAATC 59.729 52.381 0.00 0.00 0.00 2.17
95 96 1.331214 CACTTGCCCTCACACCAAAT 58.669 50.000 0.00 0.00 0.00 2.32
96 97 1.391157 GCACTTGCCCTCACACCAAA 61.391 55.000 0.00 0.00 34.31 3.28
97 98 1.827789 GCACTTGCCCTCACACCAA 60.828 57.895 0.00 0.00 34.31 3.67
98 99 2.203337 GCACTTGCCCTCACACCA 60.203 61.111 0.00 0.00 34.31 4.17
124 125 2.831366 TATCGTGAGACCTCGCCGC 61.831 63.158 5.14 0.00 46.97 6.53
125 126 1.009900 GTATCGTGAGACCTCGCCG 60.010 63.158 5.14 4.25 46.97 6.46
126 127 1.009900 CGTATCGTGAGACCTCGCC 60.010 63.158 5.14 0.00 46.97 5.54
127 128 0.098376 AACGTATCGTGAGACCTCGC 59.902 55.000 0.00 0.71 46.97 5.03
128 129 1.129998 ACAACGTATCGTGAGACCTCG 59.870 52.381 0.00 0.00 46.97 4.63
129 130 2.915738 ACAACGTATCGTGAGACCTC 57.084 50.000 0.00 0.00 46.97 3.85
130 131 3.655276 AAACAACGTATCGTGAGACCT 57.345 42.857 0.00 0.00 46.97 3.85
131 132 3.492011 ACAAAACAACGTATCGTGAGACC 59.508 43.478 0.00 0.00 46.97 3.85
132 133 4.207635 TCACAAAACAACGTATCGTGAGAC 59.792 41.667 0.00 0.00 46.97 3.36
134 135 4.702247 TCACAAAACAACGTATCGTGAG 57.298 40.909 0.00 0.00 39.99 3.51
135 136 5.466432 TTTCACAAAACAACGTATCGTGA 57.534 34.783 0.00 0.00 39.99 4.35
136 137 6.846786 TGTATTTCACAAAACAACGTATCGTG 59.153 34.615 0.00 0.00 35.39 4.35
137 138 6.946165 TGTATTTCACAAAACAACGTATCGT 58.054 32.000 0.00 0.00 36.34 3.73
138 139 7.067116 ACTGTATTTCACAAAACAACGTATCG 58.933 34.615 0.00 0.00 36.48 2.92
139 140 9.309796 GTACTGTATTTCACAAAACAACGTATC 57.690 33.333 0.00 0.00 36.48 2.24
140 141 8.828644 TGTACTGTATTTCACAAAACAACGTAT 58.171 29.630 0.00 0.00 36.48 3.06
141 142 8.115520 GTGTACTGTATTTCACAAAACAACGTA 58.884 33.333 0.00 0.00 36.48 3.57
142 143 6.962678 GTGTACTGTATTTCACAAAACAACGT 59.037 34.615 0.00 0.00 36.48 3.99
143 144 6.137926 CGTGTACTGTATTTCACAAAACAACG 59.862 38.462 7.53 0.00 36.48 4.10
144 145 7.181418 TCGTGTACTGTATTTCACAAAACAAC 58.819 34.615 7.53 0.00 36.48 3.32
145 146 7.304919 TCGTGTACTGTATTTCACAAAACAA 57.695 32.000 7.53 0.00 36.48 2.83
146 147 6.905544 TCGTGTACTGTATTTCACAAAACA 57.094 33.333 7.53 0.00 36.48 2.83
147 148 7.404203 AGTTCGTGTACTGTATTTCACAAAAC 58.596 34.615 7.53 9.40 36.48 2.43
148 149 7.278203 TGAGTTCGTGTACTGTATTTCACAAAA 59.722 33.333 7.53 0.39 36.48 2.44
149 150 6.757478 TGAGTTCGTGTACTGTATTTCACAAA 59.243 34.615 7.53 0.00 36.48 2.83
150 151 6.274579 TGAGTTCGTGTACTGTATTTCACAA 58.725 36.000 7.53 0.62 36.48 3.33
151 152 5.834169 TGAGTTCGTGTACTGTATTTCACA 58.166 37.500 7.53 0.00 35.30 3.58
152 153 6.183360 CCATGAGTTCGTGTACTGTATTTCAC 60.183 42.308 0.00 0.00 0.00 3.18
153 154 5.867174 CCATGAGTTCGTGTACTGTATTTCA 59.133 40.000 0.00 0.00 0.00 2.69
154 155 5.867716 ACCATGAGTTCGTGTACTGTATTTC 59.132 40.000 0.00 0.00 0.00 2.17
155 156 5.790593 ACCATGAGTTCGTGTACTGTATTT 58.209 37.500 0.00 0.00 0.00 1.40
156 157 5.401531 ACCATGAGTTCGTGTACTGTATT 57.598 39.130 0.00 0.00 0.00 1.89
157 158 5.401531 AACCATGAGTTCGTGTACTGTAT 57.598 39.130 0.00 0.00 30.99 2.29
158 159 4.801891 GAACCATGAGTTCGTGTACTGTA 58.198 43.478 10.14 0.00 45.21 2.74
159 160 3.650139 GAACCATGAGTTCGTGTACTGT 58.350 45.455 10.14 0.00 45.21 3.55
169 170 3.417069 TTGTGGATCGAACCATGAGTT 57.583 42.857 18.19 0.00 42.17 3.01
170 171 3.417069 TTTGTGGATCGAACCATGAGT 57.583 42.857 18.19 0.00 42.17 3.41
171 172 4.764679 TTTTTGTGGATCGAACCATGAG 57.235 40.909 18.19 0.00 42.17 2.90
192 193 7.980099 CGGAAAAGACTGTATACTACCAAGATT 59.020 37.037 4.17 0.00 0.00 2.40
199 200 6.448207 AGGTCGGAAAAGACTGTATACTAC 57.552 41.667 4.17 0.00 40.76 2.73
203 204 3.703052 GGGAGGTCGGAAAAGACTGTATA 59.297 47.826 0.00 0.00 40.76 1.47
207 208 0.036294 GGGGAGGTCGGAAAAGACTG 60.036 60.000 0.00 0.00 40.76 3.51
210 211 1.486145 GGTGGGGAGGTCGGAAAAGA 61.486 60.000 0.00 0.00 0.00 2.52
214 217 2.096707 TACAGGTGGGGAGGTCGGAA 62.097 60.000 0.00 0.00 0.00 4.30
218 221 1.763545 GATCTTACAGGTGGGGAGGTC 59.236 57.143 0.00 0.00 0.00 3.85
225 228 3.055385 TCCGGAAAAGATCTTACAGGTGG 60.055 47.826 21.36 14.21 0.00 4.61
333 344 3.073798 TGATCTTTTGCACTCAGGGGTAA 59.926 43.478 0.00 0.00 0.00 2.85
334 345 2.642311 TGATCTTTTGCACTCAGGGGTA 59.358 45.455 0.00 0.00 0.00 3.69
338 349 3.754850 TGATGTGATCTTTTGCACTCAGG 59.245 43.478 0.00 0.00 36.05 3.86
339 350 4.694037 TCTGATGTGATCTTTTGCACTCAG 59.306 41.667 1.05 1.05 39.22 3.35
344 355 7.868906 TGATATTCTGATGTGATCTTTTGCA 57.131 32.000 0.00 0.00 0.00 4.08
421 433 4.629523 GCGGTGGGTGGGACGAAA 62.630 66.667 0.00 0.00 0.00 3.46
599 612 5.565509 AGACCAGGAAGAAAAGGAAATCTC 58.434 41.667 0.00 0.00 0.00 2.75
620 633 1.423794 GGTTGGTGGTGGAAGGGAGA 61.424 60.000 0.00 0.00 0.00 3.71
705 719 2.362077 GCTCAAAGGAAGAACAGGCAAA 59.638 45.455 0.00 0.00 0.00 3.68
713 727 1.002087 GGAGACCGCTCAAAGGAAGAA 59.998 52.381 0.00 0.00 43.14 2.52
1128 1146 4.818546 CCGGGATCGAGAAAACTAGTAGTA 59.181 45.833 2.50 0.00 39.00 1.82
1294 1345 1.137872 TCGTCGTAGTACTCCTCCTCC 59.862 57.143 0.00 0.00 0.00 4.30
1345 1396 1.648467 GAATTGTCACCTGCTCCGGC 61.648 60.000 0.00 0.00 39.26 6.13
1365 1416 5.704515 TCGTCTTCACTAGTACTGTAGCTTT 59.295 40.000 5.39 0.00 0.00 3.51
1366 1417 5.243981 TCGTCTTCACTAGTACTGTAGCTT 58.756 41.667 5.39 0.00 0.00 3.74
1367 1418 4.829968 TCGTCTTCACTAGTACTGTAGCT 58.170 43.478 5.39 0.00 0.00 3.32
1375 1426 4.262617 ACAGAGCATCGTCTTCACTAGTA 58.737 43.478 0.00 0.00 42.67 1.82
1376 1427 3.085533 ACAGAGCATCGTCTTCACTAGT 58.914 45.455 0.00 0.00 42.67 2.57
1377 1428 3.773860 ACAGAGCATCGTCTTCACTAG 57.226 47.619 0.00 0.00 42.67 2.57
1387 1438 7.664082 ATTAATTAGGATGAACAGAGCATCG 57.336 36.000 0.00 0.00 42.32 3.84
1404 1455 6.750501 CCGTCGTCAGAACTCAGAATTAATTA 59.249 38.462 0.00 0.00 0.00 1.40
1415 1466 0.388649 ATGCACCGTCGTCAGAACTC 60.389 55.000 0.00 0.00 0.00 3.01
1416 1467 0.667487 CATGCACCGTCGTCAGAACT 60.667 55.000 0.00 0.00 0.00 3.01
1417 1468 1.781555 CATGCACCGTCGTCAGAAC 59.218 57.895 0.00 0.00 0.00 3.01
1418 1469 2.027073 GCATGCACCGTCGTCAGAA 61.027 57.895 14.21 0.00 0.00 3.02
1419 1470 2.432456 GCATGCACCGTCGTCAGA 60.432 61.111 14.21 0.00 0.00 3.27
1420 1471 3.842126 CGCATGCACCGTCGTCAG 61.842 66.667 19.57 0.00 0.00 3.51
1550 1601 4.643387 AACCAGACGGCCACCTGC 62.643 66.667 14.20 0.00 40.16 4.85
1664 1715 1.003233 GTGGTTGTCCTGGAGGAGC 60.003 63.158 0.00 0.00 46.49 4.70
1702 1753 1.021202 TGAAGCGTGGTTGACTTTGG 58.979 50.000 0.00 0.00 0.00 3.28
1774 1832 1.899814 ACCTGACGCCACAAAGAGATA 59.100 47.619 0.00 0.00 0.00 1.98
1775 1833 0.687354 ACCTGACGCCACAAAGAGAT 59.313 50.000 0.00 0.00 0.00 2.75
1776 1834 0.249868 CACCTGACGCCACAAAGAGA 60.250 55.000 0.00 0.00 0.00 3.10
1777 1835 1.230635 CCACCTGACGCCACAAAGAG 61.231 60.000 0.00 0.00 0.00 2.85
2265 2339 2.943034 GATCGTCGTCGTCCGTGC 60.943 66.667 1.33 0.00 37.94 5.34
2284 2361 4.148825 ATCTGGCCGTCGTCCTGC 62.149 66.667 0.00 0.00 0.00 4.85
2285 2362 2.105128 GATCTGGCCGTCGTCCTG 59.895 66.667 0.00 0.00 0.00 3.86
2332 2409 1.138047 GCACGCTTCTTGATGCATGC 61.138 55.000 11.82 11.82 40.96 4.06
2334 2411 1.300971 ACGCACGCTTCTTGATGCAT 61.301 50.000 0.00 0.00 37.97 3.96
2335 2412 1.960763 ACGCACGCTTCTTGATGCA 60.961 52.632 8.77 0.00 37.97 3.96
2396 2480 2.106418 GAGAAAACAAAACGCCACGAC 58.894 47.619 0.00 0.00 0.00 4.34
2489 2574 6.599244 CCACCGATATATTACCCTAACTCGTA 59.401 42.308 0.00 0.00 0.00 3.43
2490 2575 5.416952 CCACCGATATATTACCCTAACTCGT 59.583 44.000 0.00 0.00 0.00 4.18
2491 2576 5.416952 ACCACCGATATATTACCCTAACTCG 59.583 44.000 0.00 0.00 0.00 4.18
2544 2629 1.294659 GAGGCTTTGACTCCGTGCAG 61.295 60.000 0.00 0.00 30.04 4.41
2565 2650 6.658816 TGACAAGATGTACTGTGCCATAAAAT 59.341 34.615 0.00 0.00 0.00 1.82
2615 2710 5.543714 TCTTACAAAACTCAGACGGCATAA 58.456 37.500 0.00 0.00 0.00 1.90
2620 2716 5.389935 GCTTGATCTTACAAAACTCAGACGG 60.390 44.000 0.00 0.00 0.00 4.79
2677 2775 4.479158 AGAGGCCAGAAATACAAAACCAA 58.521 39.130 5.01 0.00 0.00 3.67
2720 2821 6.997655 TCCATAGTACTATTCCTTGCATCTG 58.002 40.000 12.87 0.00 0.00 2.90
2778 2879 5.305585 TCCAAGGTCTGAAAACTATGACAC 58.694 41.667 0.00 0.00 0.00 3.67
2786 2887 7.652105 GGTTTCTTTATTCCAAGGTCTGAAAAC 59.348 37.037 0.00 0.00 0.00 2.43
2792 2893 5.077564 GGTGGTTTCTTTATTCCAAGGTCT 58.922 41.667 0.00 0.00 0.00 3.85
2859 2962 8.791327 ATTGTTTTCAACATTTTCTGGACTTT 57.209 26.923 0.00 0.00 42.94 2.66
2929 4450 0.603975 GAGATAGGTTGCCGCCCATC 60.604 60.000 0.00 0.00 0.00 3.51
3001 4557 8.090214 CCTTGAACTATTTCATTGTCCACATTT 58.910 33.333 0.00 0.00 41.50 2.32
3046 4602 2.132740 TTCAAAATGCTGAACCGTGC 57.867 45.000 0.00 0.00 30.31 5.34
3068 4624 8.956426 TCGCTCCATAAGTGAATAAAGATTTTT 58.044 29.630 0.00 0.00 41.52 1.94
3162 4718 7.618137 TCCTAGTAGTAGTTTCAATTTGGACC 58.382 38.462 3.91 0.00 0.00 4.46
3177 4733 7.634526 TTCCTGATGATCTCTCCTAGTAGTA 57.365 40.000 0.00 0.00 0.00 1.82
3188 4744 4.142049 ACCTCTCGTTTTCCTGATGATCTC 60.142 45.833 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.