Multiple sequence alignment - TraesCS6A01G289900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G289900 chr6A 100.000 2515 0 0 445 2959 521647916 521650430 0.000000e+00 4645.0
1 TraesCS6A01G289900 chr6A 100.000 289 0 0 3150 3438 521650621 521650909 5.050000e-148 534.0
2 TraesCS6A01G289900 chr6A 82.953 569 83 11 1528 2089 162310163 162309602 5.120000e-138 501.0
3 TraesCS6A01G289900 chr6A 88.028 284 27 3 1180 1459 162310605 162310325 2.560000e-86 329.0
4 TraesCS6A01G289900 chr6A 87.815 238 20 6 2182 2419 162309437 162309209 1.570000e-68 270.0
5 TraesCS6A01G289900 chr6A 100.000 137 0 0 1 137 521647472 521647608 1.580000e-63 254.0
6 TraesCS6A01G289900 chr6A 76.531 490 78 22 1564 2029 177697071 177697547 2.060000e-57 233.0
7 TraesCS6A01G289900 chr6B 92.350 1987 101 10 445 2430 567610705 567612641 0.000000e+00 2780.0
8 TraesCS6A01G289900 chr6B 82.777 569 84 5 1528 2089 213467469 213468030 2.380000e-136 496.0
9 TraesCS6A01G289900 chr6B 86.429 280 34 2 1181 1459 213467028 213467304 1.550000e-78 303.0
10 TraesCS6A01G289900 chr6B 87.815 238 20 7 2182 2419 213468165 213468393 1.570000e-68 270.0
11 TraesCS6A01G289900 chr6B 96.471 85 3 0 1231 1315 695474265 695474349 1.290000e-29 141.0
12 TraesCS6A01G289900 chr6B 92.708 96 7 0 994 1089 695474171 695474266 4.630000e-29 139.0
13 TraesCS6A01G289900 chr6B 81.818 143 17 5 2613 2755 567612814 567612947 1.010000e-20 111.0
14 TraesCS6A01G289900 chr6D 93.133 1762 66 23 678 2423 379339849 379338127 0.000000e+00 2532.0
15 TraesCS6A01G289900 chr6D 84.615 533 68 8 1564 2089 121345724 121345199 5.090000e-143 518.0
16 TraesCS6A01G289900 chr6D 81.707 574 87 8 1528 2089 136389641 136390208 2.420000e-126 462.0
17 TraesCS6A01G289900 chr6D 87.153 288 30 3 1181 1465 121346166 121345883 1.540000e-83 320.0
18 TraesCS6A01G289900 chr6D 87.279 283 29 4 1181 1459 136389218 136389497 1.990000e-82 316.0
19 TraesCS6A01G289900 chr6D 92.473 186 13 1 2234 2419 121345003 121344819 7.320000e-67 265.0
20 TraesCS6A01G289900 chr6D 92.045 176 14 0 2244 2419 136390394 136390569 7.370000e-62 248.0
21 TraesCS6A01G289900 chr5D 93.103 290 18 2 3150 3438 432001476 432001764 1.140000e-114 424.0
22 TraesCS6A01G289900 chr5D 93.077 260 17 1 3180 3438 431999639 431999898 2.500000e-101 379.0
23 TraesCS6A01G289900 chr5D 91.457 199 15 2 2763 2959 432001310 432001508 4.370000e-69 272.0
24 TraesCS6A01G289900 chr3A 91.209 273 23 1 3166 3438 667298551 667298280 1.510000e-98 370.0
25 TraesCS6A01G289900 chr5A 77.536 276 51 7 1197 1465 654073982 654074253 4.590000e-34 156.0
26 TraesCS6A01G289900 chr5B 78.992 238 41 4 1198 1429 662942512 662942746 1.650000e-33 154.0
27 TraesCS6A01G289900 chr3D 92.553 94 7 0 994 1087 136564904 136564811 5.980000e-28 135.0
28 TraesCS6A01G289900 chr4B 77.419 248 37 11 1196 1429 660707042 660706800 2.780000e-26 130.0
29 TraesCS6A01G289900 chr7D 78.818 203 31 10 2225 2424 170729885 170729692 3.600000e-25 126.0
30 TraesCS6A01G289900 chr7D 86.567 67 7 2 2355 2420 148266694 148266629 4.760000e-09 73.1
31 TraesCS6A01G289900 chr1B 80.556 144 21 5 3298 3438 428605072 428604933 1.690000e-18 104.0
32 TraesCS6A01G289900 chr7A 86.567 67 7 2 2355 2420 149424899 149424834 4.760000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G289900 chr6A 521647472 521650909 3437 False 1811.000000 4645 100.000000 1 3438 3 chr6A.!!$F2 3437
1 TraesCS6A01G289900 chr6A 162309209 162310605 1396 True 366.666667 501 86.265333 1180 2419 3 chr6A.!!$R1 1239
2 TraesCS6A01G289900 chr6B 567610705 567612947 2242 False 1445.500000 2780 87.084000 445 2755 2 chr6B.!!$F2 2310
3 TraesCS6A01G289900 chr6B 213467028 213468393 1365 False 356.333333 496 85.673667 1181 2419 3 chr6B.!!$F1 1238
4 TraesCS6A01G289900 chr6D 379338127 379339849 1722 True 2532.000000 2532 93.133000 678 2423 1 chr6D.!!$R1 1745
5 TraesCS6A01G289900 chr6D 121344819 121346166 1347 True 367.666667 518 88.080333 1181 2419 3 chr6D.!!$R2 1238
6 TraesCS6A01G289900 chr6D 136389218 136390569 1351 False 342.000000 462 87.010333 1181 2419 3 chr6D.!!$F1 1238
7 TraesCS6A01G289900 chr5D 431999639 432001764 2125 False 358.333333 424 92.545667 2763 3438 3 chr5D.!!$F1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
986 1013 0.179034 GTCCCACTGATCAGCCCATC 60.179 60.0 22.83 7.27 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2447 2716 0.031585 TCACTCGGACGGTTGACAAG 59.968 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.801997 CCCCATTCTCCGCTGGCT 61.802 66.667 0.00 0.00 0.00 4.75
35 36 2.273449 CCCATTCTCCGCTGGCTT 59.727 61.111 0.00 0.00 0.00 4.35
36 37 1.821332 CCCATTCTCCGCTGGCTTC 60.821 63.158 0.00 0.00 0.00 3.86
37 38 1.821332 CCATTCTCCGCTGGCTTCC 60.821 63.158 0.00 0.00 0.00 3.46
38 39 2.176273 CATTCTCCGCTGGCTTCCG 61.176 63.158 0.00 0.00 0.00 4.30
50 51 2.897207 CTTCCGCCCACCATCGTA 59.103 61.111 0.00 0.00 0.00 3.43
51 52 1.445942 CTTCCGCCCACCATCGTAT 59.554 57.895 0.00 0.00 0.00 3.06
53 54 0.462937 TTCCGCCCACCATCGTATTG 60.463 55.000 0.00 0.00 0.00 1.90
55 56 2.542907 CGCCCACCATCGTATTGCC 61.543 63.158 0.00 0.00 0.00 4.52
56 57 2.542907 GCCCACCATCGTATTGCCG 61.543 63.158 0.00 0.00 0.00 5.69
59 60 1.643292 CACCATCGTATTGCCGCTG 59.357 57.895 0.00 0.00 0.00 5.18
60 61 2.180204 ACCATCGTATTGCCGCTGC 61.180 57.895 0.00 0.00 38.26 5.25
61 62 2.633657 CATCGTATTGCCGCTGCC 59.366 61.111 0.00 0.00 36.33 4.85
63 64 4.849310 TCGTATTGCCGCTGCCCC 62.849 66.667 0.00 0.00 36.33 5.80
65 66 2.753849 GTATTGCCGCTGCCCCAA 60.754 61.111 0.00 0.00 36.33 4.12
66 67 2.753849 TATTGCCGCTGCCCCAAC 60.754 61.111 0.00 0.00 36.33 3.77
67 68 3.280938 TATTGCCGCTGCCCCAACT 62.281 57.895 0.00 0.00 36.33 3.16
72 73 4.785453 CGCTGCCCCAACTCTCCC 62.785 72.222 0.00 0.00 0.00 4.30
74 75 2.993853 CTGCCCCAACTCTCCCTC 59.006 66.667 0.00 0.00 0.00 4.30
75 76 1.614824 CTGCCCCAACTCTCCCTCT 60.615 63.158 0.00 0.00 0.00 3.69
79 80 0.691413 CCCCAACTCTCCCTCTACCC 60.691 65.000 0.00 0.00 0.00 3.69
80 81 0.340208 CCCAACTCTCCCTCTACCCT 59.660 60.000 0.00 0.00 0.00 4.34
81 82 1.574339 CCCAACTCTCCCTCTACCCTA 59.426 57.143 0.00 0.00 0.00 3.53
84 85 2.245287 CAACTCTCCCTCTACCCTACCT 59.755 54.545 0.00 0.00 0.00 3.08
85 86 2.137702 ACTCTCCCTCTACCCTACCTC 58.862 57.143 0.00 0.00 0.00 3.85
86 87 2.294673 ACTCTCCCTCTACCCTACCTCT 60.295 54.545 0.00 0.00 0.00 3.69
87 88 2.787035 CTCTCCCTCTACCCTACCTCTT 59.213 54.545 0.00 0.00 0.00 2.85
88 89 2.514582 TCTCCCTCTACCCTACCTCTTG 59.485 54.545 0.00 0.00 0.00 3.02
89 90 2.245287 CTCCCTCTACCCTACCTCTTGT 59.755 54.545 0.00 0.00 0.00 3.16
90 91 2.658489 TCCCTCTACCCTACCTCTTGTT 59.342 50.000 0.00 0.00 0.00 2.83
91 92 3.032459 CCCTCTACCCTACCTCTTGTTC 58.968 54.545 0.00 0.00 0.00 3.18
92 93 3.309994 CCCTCTACCCTACCTCTTGTTCT 60.310 52.174 0.00 0.00 0.00 3.01
93 94 3.955551 CCTCTACCCTACCTCTTGTTCTC 59.044 52.174 0.00 0.00 0.00 2.87
95 96 3.596956 TCTACCCTACCTCTTGTTCTCCT 59.403 47.826 0.00 0.00 0.00 3.69
98 99 2.166664 CCCTACCTCTTGTTCTCCTTCG 59.833 54.545 0.00 0.00 0.00 3.79
99 100 2.166664 CCTACCTCTTGTTCTCCTTCGG 59.833 54.545 0.00 0.00 0.00 4.30
100 101 1.718280 ACCTCTTGTTCTCCTTCGGT 58.282 50.000 0.00 0.00 0.00 4.69
101 102 1.344763 ACCTCTTGTTCTCCTTCGGTG 59.655 52.381 0.00 0.00 0.00 4.94
102 103 1.618837 CCTCTTGTTCTCCTTCGGTGA 59.381 52.381 0.00 0.00 0.00 4.02
115 116 4.091939 GGTGACGGTAGCCCCCAC 62.092 72.222 0.00 0.00 32.78 4.61
128 129 2.933287 CCCACCCCACCTGCACTA 60.933 66.667 0.00 0.00 0.00 2.74
129 130 2.671070 CCACCCCACCTGCACTAG 59.329 66.667 0.00 0.00 0.00 2.57
130 131 2.224159 CCACCCCACCTGCACTAGT 61.224 63.158 0.00 0.00 0.00 2.57
131 132 1.296715 CACCCCACCTGCACTAGTC 59.703 63.158 0.00 0.00 0.00 2.59
132 133 1.152118 ACCCCACCTGCACTAGTCA 60.152 57.895 0.00 0.00 0.00 3.41
136 137 1.078848 CACCTGCACTAGTCAGCCC 60.079 63.158 13.69 0.00 0.00 5.19
466 467 1.150567 CTCTTCGCCGCCTTCATCTG 61.151 60.000 0.00 0.00 0.00 2.90
493 494 2.356313 AGTCCGTTGCGCTCACTG 60.356 61.111 9.73 1.93 0.00 3.66
497 498 3.639008 CGTTGCGCTCACTGCACA 61.639 61.111 9.73 0.00 43.10 4.57
510 511 3.948719 GCACAACCCCCGTCTCCA 61.949 66.667 0.00 0.00 0.00 3.86
551 552 2.507452 CAGGGCCGATGCTCATCA 59.493 61.111 10.13 0.00 41.98 3.07
593 594 1.743321 CTCCTTCGGCCTAGGCAGAG 61.743 65.000 34.09 25.24 45.06 3.35
664 665 1.979308 TGGAAATTAGGTGGACGGTGA 59.021 47.619 0.00 0.00 0.00 4.02
682 683 4.173256 GGTGATTTAATTGAAACCGCCAG 58.827 43.478 11.08 0.00 0.00 4.85
963 990 2.361610 CCCAAGCAACGGCATCCT 60.362 61.111 0.00 0.00 44.61 3.24
964 991 2.409870 CCCAAGCAACGGCATCCTC 61.410 63.158 0.00 0.00 44.61 3.71
973 1000 4.176752 GGCATCCTCCCGTCCCAC 62.177 72.222 0.00 0.00 0.00 4.61
975 1002 2.903357 CATCCTCCCGTCCCACTG 59.097 66.667 0.00 0.00 0.00 3.66
976 1003 1.685765 CATCCTCCCGTCCCACTGA 60.686 63.158 0.00 0.00 0.00 3.41
977 1004 1.050988 CATCCTCCCGTCCCACTGAT 61.051 60.000 0.00 0.00 0.00 2.90
980 1007 1.680522 CCTCCCGTCCCACTGATCAG 61.681 65.000 21.37 21.37 0.00 2.90
982 1009 2.187946 CCGTCCCACTGATCAGCC 59.812 66.667 22.83 4.93 0.00 4.85
983 1010 2.187946 CGTCCCACTGATCAGCCC 59.812 66.667 22.83 5.27 0.00 5.19
984 1011 2.659063 CGTCCCACTGATCAGCCCA 61.659 63.158 22.83 1.34 0.00 5.36
985 1012 1.918253 GTCCCACTGATCAGCCCAT 59.082 57.895 22.83 0.00 0.00 4.00
986 1013 0.179034 GTCCCACTGATCAGCCCATC 60.179 60.000 22.83 7.27 0.00 3.51
987 1014 0.326904 TCCCACTGATCAGCCCATCT 60.327 55.000 22.83 0.00 0.00 2.90
1163 1190 3.917760 CGCCCCCTCCTCATCGTC 61.918 72.222 0.00 0.00 0.00 4.20
1164 1191 3.551407 GCCCCCTCCTCATCGTCC 61.551 72.222 0.00 0.00 0.00 4.79
1168 1195 2.196925 CCCTCCTCATCGTCCTCGG 61.197 68.421 0.00 0.00 37.69 4.63
1171 1198 3.518998 CCTCATCGTCCTCGGCGT 61.519 66.667 6.85 0.00 37.69 5.68
1489 1525 1.077858 TGCATGCACTCGGCCATTA 60.078 52.632 18.46 0.00 43.89 1.90
1492 1528 0.027979 CATGCACTCGGCCATTAACG 59.972 55.000 2.24 0.00 43.89 3.18
1511 1556 2.290641 ACGTGTTGTTTCTGATGGAAGC 59.709 45.455 0.00 0.00 35.16 3.86
1705 1871 2.032528 ATGTGGGACGTGCACCTG 59.967 61.111 12.15 0.00 0.00 4.00
2153 2387 2.260434 GGAACGTGACGGCTGCTA 59.740 61.111 10.66 0.00 0.00 3.49
2154 2388 1.373748 GGAACGTGACGGCTGCTAA 60.374 57.895 10.66 0.00 0.00 3.09
2155 2389 0.947180 GGAACGTGACGGCTGCTAAA 60.947 55.000 10.66 0.00 0.00 1.85
2156 2390 1.076332 GAACGTGACGGCTGCTAAAT 58.924 50.000 10.66 0.00 0.00 1.40
2435 2704 1.439228 CTCCTGCATCCACGTCGAT 59.561 57.895 0.00 0.00 0.00 3.59
2438 2707 0.873312 CCTGCATCCACGTCGATGAG 60.873 60.000 24.79 17.54 41.92 2.90
2441 2710 0.924090 GCATCCACGTCGATGAGTTC 59.076 55.000 24.79 5.20 41.92 3.01
2449 2718 2.509336 CGATGAGTTCGGGCGCTT 60.509 61.111 7.64 0.00 44.28 4.68
2455 2724 2.171489 GAGTTCGGGCGCTTGTCAAC 62.171 60.000 7.64 3.79 0.00 3.18
2460 2729 3.723348 GGCGCTTGTCAACCGTCC 61.723 66.667 7.64 1.20 0.00 4.79
2461 2730 4.072088 GCGCTTGTCAACCGTCCG 62.072 66.667 0.00 0.00 0.00 4.79
2467 2736 0.677288 TTGTCAACCGTCCGAGTGAT 59.323 50.000 0.00 0.00 0.00 3.06
2468 2737 0.677288 TGTCAACCGTCCGAGTGATT 59.323 50.000 0.00 0.00 0.00 2.57
2471 2740 3.243805 TGTCAACCGTCCGAGTGATTAAA 60.244 43.478 0.00 0.00 0.00 1.52
2472 2741 3.742369 GTCAACCGTCCGAGTGATTAAAA 59.258 43.478 0.00 0.00 0.00 1.52
2473 2742 4.211794 GTCAACCGTCCGAGTGATTAAAAA 59.788 41.667 0.00 0.00 0.00 1.94
2474 2743 4.449743 TCAACCGTCCGAGTGATTAAAAAG 59.550 41.667 0.00 0.00 0.00 2.27
2475 2744 3.999046 ACCGTCCGAGTGATTAAAAAGT 58.001 40.909 0.00 0.00 0.00 2.66
2476 2745 3.992427 ACCGTCCGAGTGATTAAAAAGTC 59.008 43.478 0.00 0.00 0.00 3.01
2477 2746 4.243270 CCGTCCGAGTGATTAAAAAGTCT 58.757 43.478 0.00 0.00 0.00 3.24
2478 2747 4.326548 CCGTCCGAGTGATTAAAAAGTCTC 59.673 45.833 0.00 0.00 0.00 3.36
2479 2748 5.162075 CGTCCGAGTGATTAAAAAGTCTCT 58.838 41.667 0.00 0.00 0.00 3.10
2480 2749 6.320171 CGTCCGAGTGATTAAAAAGTCTCTA 58.680 40.000 0.00 0.00 0.00 2.43
2481 2750 6.973474 CGTCCGAGTGATTAAAAAGTCTCTAT 59.027 38.462 0.00 0.00 0.00 1.98
2482 2751 8.127327 CGTCCGAGTGATTAAAAAGTCTCTATA 58.873 37.037 0.00 0.00 0.00 1.31
2483 2752 9.235537 GTCCGAGTGATTAAAAAGTCTCTATAC 57.764 37.037 0.00 0.00 0.00 1.47
2484 2753 8.963725 TCCGAGTGATTAAAAAGTCTCTATACA 58.036 33.333 0.00 0.00 0.00 2.29
2485 2754 9.021863 CCGAGTGATTAAAAAGTCTCTATACAC 57.978 37.037 0.00 0.00 0.00 2.90
2486 2755 8.734933 CGAGTGATTAAAAAGTCTCTATACACG 58.265 37.037 0.00 0.00 0.00 4.49
2487 2756 8.928270 AGTGATTAAAAAGTCTCTATACACGG 57.072 34.615 0.00 0.00 0.00 4.94
2502 2771 3.551259 ACGGCCGTGATTCTTTGAT 57.449 47.368 33.75 0.00 0.00 2.57
2507 2776 3.728864 CGGCCGTGATTCTTTGATTCTTG 60.729 47.826 19.50 0.00 0.00 3.02
2532 2801 3.982576 GTGAAACGGTTGAAGGACAAT 57.017 42.857 0.00 0.00 40.76 2.71
2534 2803 3.066203 GTGAAACGGTTGAAGGACAATGT 59.934 43.478 0.00 0.00 40.76 2.71
2536 2805 5.048991 GTGAAACGGTTGAAGGACAATGTAT 60.049 40.000 0.00 0.00 40.76 2.29
2537 2806 6.148150 GTGAAACGGTTGAAGGACAATGTATA 59.852 38.462 0.00 0.00 40.76 1.47
2538 2807 6.370442 TGAAACGGTTGAAGGACAATGTATAG 59.630 38.462 0.00 0.00 40.76 1.31
2539 2808 5.416271 ACGGTTGAAGGACAATGTATAGT 57.584 39.130 0.00 0.00 40.76 2.12
2542 2811 6.049149 CGGTTGAAGGACAATGTATAGTGAT 58.951 40.000 0.00 0.00 40.76 3.06
2543 2812 6.201044 CGGTTGAAGGACAATGTATAGTGATC 59.799 42.308 0.00 0.00 40.76 2.92
2544 2813 7.047891 GGTTGAAGGACAATGTATAGTGATCA 58.952 38.462 0.00 0.00 40.76 2.92
2545 2814 7.716998 GGTTGAAGGACAATGTATAGTGATCAT 59.283 37.037 0.00 0.00 40.76 2.45
2546 2815 8.768955 GTTGAAGGACAATGTATAGTGATCATC 58.231 37.037 0.00 0.00 40.76 2.92
2547 2816 7.147976 TGAAGGACAATGTATAGTGATCATCG 58.852 38.462 0.00 0.00 0.00 3.84
2548 2817 6.656632 AGGACAATGTATAGTGATCATCGT 57.343 37.500 0.00 0.00 0.00 3.73
2549 2818 6.450545 AGGACAATGTATAGTGATCATCGTG 58.549 40.000 0.00 0.00 0.00 4.35
2552 2821 6.283694 ACAATGTATAGTGATCATCGTGCTT 58.716 36.000 0.00 0.00 0.00 3.91
2553 2822 6.201615 ACAATGTATAGTGATCATCGTGCTTG 59.798 38.462 0.00 1.39 0.00 4.01
2555 2824 2.602257 TAGTGATCATCGTGCTTGGG 57.398 50.000 0.00 0.00 0.00 4.12
2558 2827 0.612744 TGATCATCGTGCTTGGGTCA 59.387 50.000 0.00 0.00 0.00 4.02
2559 2828 1.003003 TGATCATCGTGCTTGGGTCAA 59.997 47.619 0.00 0.00 0.00 3.18
2562 2831 0.518636 CATCGTGCTTGGGTCAAGTG 59.481 55.000 9.07 1.38 42.77 3.16
2565 2843 2.203480 TGCTTGGGTCAAGTGGGC 60.203 61.111 9.07 0.00 42.77 5.36
2568 2846 4.966787 TTGGGTCAAGTGGGCGCC 62.967 66.667 21.18 21.18 0.00 6.53
2591 2869 0.389817 TGGATCGTCGGCAGAAGTTG 60.390 55.000 0.00 0.00 0.00 3.16
2592 2870 0.389948 GGATCGTCGGCAGAAGTTGT 60.390 55.000 0.00 0.00 0.00 3.32
2593 2871 1.135199 GGATCGTCGGCAGAAGTTGTA 60.135 52.381 0.00 0.00 0.00 2.41
2594 2872 2.481449 GGATCGTCGGCAGAAGTTGTAT 60.481 50.000 0.00 0.00 0.00 2.29
2596 2874 3.034721 TCGTCGGCAGAAGTTGTATTT 57.965 42.857 0.00 0.00 0.00 1.40
2597 2875 2.734606 TCGTCGGCAGAAGTTGTATTTG 59.265 45.455 0.00 0.00 0.00 2.32
2598 2876 2.724839 CGTCGGCAGAAGTTGTATTTGC 60.725 50.000 0.00 0.00 0.00 3.68
2599 2877 2.225491 GTCGGCAGAAGTTGTATTTGCA 59.775 45.455 0.00 0.00 36.53 4.08
2600 2878 2.225491 TCGGCAGAAGTTGTATTTGCAC 59.775 45.455 0.00 0.00 36.53 4.57
2601 2879 2.668279 CGGCAGAAGTTGTATTTGCACC 60.668 50.000 0.00 0.00 36.53 5.01
2602 2880 2.295909 GGCAGAAGTTGTATTTGCACCA 59.704 45.455 0.00 0.00 36.53 4.17
2603 2881 3.568538 GCAGAAGTTGTATTTGCACCAG 58.431 45.455 0.00 0.00 34.99 4.00
2604 2882 3.568538 CAGAAGTTGTATTTGCACCAGC 58.431 45.455 0.00 0.00 42.57 4.85
2605 2883 3.254166 CAGAAGTTGTATTTGCACCAGCT 59.746 43.478 0.00 0.00 42.74 4.24
2606 2884 3.891366 AGAAGTTGTATTTGCACCAGCTT 59.109 39.130 0.00 0.00 42.74 3.74
2607 2885 4.342092 AGAAGTTGTATTTGCACCAGCTTT 59.658 37.500 0.00 0.00 42.74 3.51
2608 2886 3.981211 AGTTGTATTTGCACCAGCTTTG 58.019 40.909 0.00 0.00 42.74 2.77
2609 2887 3.059166 GTTGTATTTGCACCAGCTTTGG 58.941 45.455 0.00 0.00 42.74 3.28
2610 2888 2.591923 TGTATTTGCACCAGCTTTGGA 58.408 42.857 0.00 0.00 42.74 3.53
2611 2889 2.961741 TGTATTTGCACCAGCTTTGGAA 59.038 40.909 0.00 0.00 42.74 3.53
2657 2935 0.784778 GCTAGTGTCACGCTGTCAAC 59.215 55.000 0.00 0.00 0.00 3.18
2661 2939 2.245532 GTCACGCTGTCAACACGC 59.754 61.111 5.46 1.46 0.00 5.34
2674 2952 2.939756 TCAACACGCTGACTTGCTTAAA 59.060 40.909 0.00 0.00 0.00 1.52
2683 2961 5.063944 CGCTGACTTGCTTAAATGAGTATGT 59.936 40.000 0.00 0.00 0.00 2.29
2684 2962 6.402550 CGCTGACTTGCTTAAATGAGTATGTT 60.403 38.462 0.00 0.00 0.00 2.71
2685 2963 6.963805 GCTGACTTGCTTAAATGAGTATGTTC 59.036 38.462 0.00 0.00 0.00 3.18
2686 2964 7.148340 GCTGACTTGCTTAAATGAGTATGTTCT 60.148 37.037 0.00 0.00 0.00 3.01
2687 2965 8.032952 TGACTTGCTTAAATGAGTATGTTCTG 57.967 34.615 0.00 0.00 0.00 3.02
2688 2966 7.661437 TGACTTGCTTAAATGAGTATGTTCTGT 59.339 33.333 0.00 0.00 0.00 3.41
2689 2967 7.810658 ACTTGCTTAAATGAGTATGTTCTGTG 58.189 34.615 0.00 0.00 0.00 3.66
2690 2968 7.445402 ACTTGCTTAAATGAGTATGTTCTGTGT 59.555 33.333 0.00 0.00 0.00 3.72
2691 2969 7.364522 TGCTTAAATGAGTATGTTCTGTGTC 57.635 36.000 0.00 0.00 0.00 3.67
2692 2970 6.090763 TGCTTAAATGAGTATGTTCTGTGTCG 59.909 38.462 0.00 0.00 0.00 4.35
2693 2971 6.090898 GCTTAAATGAGTATGTTCTGTGTCGT 59.909 38.462 0.00 0.00 0.00 4.34
2694 2972 5.845985 AAATGAGTATGTTCTGTGTCGTG 57.154 39.130 0.00 0.00 0.00 4.35
2696 2974 3.897325 TGAGTATGTTCTGTGTCGTGTC 58.103 45.455 0.00 0.00 0.00 3.67
2698 2976 2.292569 AGTATGTTCTGTGTCGTGTCGT 59.707 45.455 0.00 0.00 0.00 4.34
2699 2977 1.487482 ATGTTCTGTGTCGTGTCGTG 58.513 50.000 0.00 0.00 0.00 4.35
2700 2978 0.171679 TGTTCTGTGTCGTGTCGTGT 59.828 50.000 0.00 0.00 0.00 4.49
2702 2980 0.590481 TTCTGTGTCGTGTCGTGTCG 60.590 55.000 0.00 0.00 0.00 4.35
2704 2982 1.529065 CTGTGTCGTGTCGTGTCGTG 61.529 60.000 0.00 0.00 0.00 4.35
2705 2983 2.025013 TGTCGTGTCGTGTCGTGG 59.975 61.111 0.00 0.00 0.00 4.94
2706 2984 3.392440 GTCGTGTCGTGTCGTGGC 61.392 66.667 0.00 0.00 0.00 5.01
2707 2985 4.634133 TCGTGTCGTGTCGTGGCC 62.634 66.667 0.00 0.00 0.00 5.36
2708 2986 4.934942 CGTGTCGTGTCGTGGCCA 62.935 66.667 0.00 0.00 0.00 5.36
2710 2988 3.533105 TGTCGTGTCGTGGCCACT 61.533 61.111 32.28 0.00 0.00 4.00
2711 2989 2.279918 GTCGTGTCGTGGCCACTT 60.280 61.111 32.28 0.00 0.00 3.16
2713 2991 4.012895 CGTGTCGTGGCCACTTGC 62.013 66.667 32.28 21.36 40.16 4.01
2714 2992 2.591715 GTGTCGTGGCCACTTGCT 60.592 61.111 32.28 0.00 40.92 3.91
2715 2993 1.301401 GTGTCGTGGCCACTTGCTA 60.301 57.895 32.28 12.13 40.92 3.49
2716 2994 0.882927 GTGTCGTGGCCACTTGCTAA 60.883 55.000 32.28 10.08 40.92 3.09
2718 2996 1.165270 GTCGTGGCCACTTGCTAATT 58.835 50.000 32.28 0.00 40.92 1.40
2720 2998 2.351726 GTCGTGGCCACTTGCTAATTAG 59.648 50.000 32.28 13.53 40.92 1.73
2723 3001 3.081804 GTGGCCACTTGCTAATTAGTGT 58.918 45.455 29.12 7.94 40.06 3.55
2724 3002 3.506067 GTGGCCACTTGCTAATTAGTGTT 59.494 43.478 29.12 0.00 40.06 3.32
2725 3003 4.022329 GTGGCCACTTGCTAATTAGTGTTT 60.022 41.667 29.12 0.00 40.06 2.83
2726 3004 4.022416 TGGCCACTTGCTAATTAGTGTTTG 60.022 41.667 13.91 6.79 40.06 2.93
2727 3005 4.022329 GGCCACTTGCTAATTAGTGTTTGT 60.022 41.667 13.91 4.19 40.06 2.83
2728 3006 5.508994 GGCCACTTGCTAATTAGTGTTTGTT 60.509 40.000 13.91 0.00 40.06 2.83
2729 3007 5.983118 GCCACTTGCTAATTAGTGTTTGTTT 59.017 36.000 13.91 0.00 40.06 2.83
2730 3008 6.074356 GCCACTTGCTAATTAGTGTTTGTTTG 60.074 38.462 13.91 1.94 40.06 2.93
2731 3009 6.074356 CCACTTGCTAATTAGTGTTTGTTTGC 60.074 38.462 13.91 0.00 40.06 3.68
2732 3010 6.697019 CACTTGCTAATTAGTGTTTGTTTGCT 59.303 34.615 13.91 0.00 37.56 3.91
2742 3020 3.993736 GTGTTTGTTTGCTTTGGTGACTT 59.006 39.130 0.00 0.00 0.00 3.01
2755 3033 1.143073 GGTGACTTTGGAGTGGAGGTT 59.857 52.381 0.00 0.00 35.88 3.50
2756 3034 2.222027 GTGACTTTGGAGTGGAGGTTG 58.778 52.381 0.00 0.00 35.88 3.77
2757 3035 1.843851 TGACTTTGGAGTGGAGGTTGT 59.156 47.619 0.00 0.00 35.88 3.32
2758 3036 2.158813 TGACTTTGGAGTGGAGGTTGTC 60.159 50.000 0.00 0.00 35.88 3.18
2808 3086 4.735132 CGAAGCTTCGGCCGGTCA 62.735 66.667 35.58 8.99 46.30 4.02
2817 3095 4.388499 GGCCGGTCACGTCCATGT 62.388 66.667 0.00 0.00 38.19 3.21
2842 3120 1.226859 CCTCGCAACGATTCGGCTA 60.227 57.895 11.29 0.00 34.61 3.93
2847 3125 1.418342 GCAACGATTCGGCTAGCGAA 61.418 55.000 19.31 19.31 0.00 4.70
2851 3129 1.138047 CGATTCGGCTAGCGAAACGT 61.138 55.000 27.04 14.29 37.05 3.99
2861 3139 1.669760 GCGAAACGTGGGATGTGGA 60.670 57.895 0.00 0.00 0.00 4.02
2873 3151 3.612247 ATGTGGACCCTGCTCACGC 62.612 63.158 0.00 0.00 34.43 5.34
2893 3171 2.807895 GCGCGTGCCTTCTTCGTA 60.808 61.111 10.56 0.00 33.98 3.43
2905 3183 4.435651 GCCTTCTTCGTATTTTCTTCCACG 60.436 45.833 0.00 0.00 35.78 4.94
2910 3188 4.261578 TCGTATTTTCTTCCACGTCCTT 57.738 40.909 0.00 0.00 35.91 3.36
2922 3200 1.749634 CACGTCCTTTATCGTCCTCCT 59.250 52.381 0.00 0.00 38.23 3.69
2924 3202 1.002684 CGTCCTTTATCGTCCTCCTCG 60.003 57.143 0.00 0.00 0.00 4.63
2925 3203 1.030457 TCCTTTATCGTCCTCCTCGC 58.970 55.000 0.00 0.00 0.00 5.03
2926 3204 0.744874 CCTTTATCGTCCTCCTCGCA 59.255 55.000 0.00 0.00 0.00 5.10
2927 3205 1.341531 CCTTTATCGTCCTCCTCGCAT 59.658 52.381 0.00 0.00 0.00 4.73
3170 3462 3.531538 TCTCTCTCTCTCTTTCTCTCGC 58.468 50.000 0.00 0.00 0.00 5.03
3171 3463 3.197766 TCTCTCTCTCTCTTTCTCTCGCT 59.802 47.826 0.00 0.00 0.00 4.93
3172 3464 3.531538 TCTCTCTCTCTTTCTCTCGCTC 58.468 50.000 0.00 0.00 0.00 5.03
3173 3465 2.276201 TCTCTCTCTTTCTCTCGCTCG 58.724 52.381 0.00 0.00 0.00 5.03
3174 3466 0.730265 TCTCTCTTTCTCTCGCTCGC 59.270 55.000 0.00 0.00 0.00 5.03
3175 3467 0.732571 CTCTCTTTCTCTCGCTCGCT 59.267 55.000 0.00 0.00 0.00 4.93
3176 3468 0.730265 TCTCTTTCTCTCGCTCGCTC 59.270 55.000 0.00 0.00 0.00 5.03
3177 3469 0.588730 CTCTTTCTCTCGCTCGCTCG 60.589 60.000 0.00 0.00 0.00 5.03
3178 3470 2.202492 TTTCTCTCGCTCGCTCGC 60.202 61.111 0.00 0.00 0.00 5.03
3179 3471 2.591129 CTTTCTCTCGCTCGCTCGCT 62.591 60.000 0.00 0.00 0.00 4.93
3180 3472 2.585170 TTTCTCTCGCTCGCTCGCTC 62.585 60.000 0.00 0.00 0.00 5.03
3181 3473 3.572539 CTCTCGCTCGCTCGCTCT 61.573 66.667 0.00 0.00 0.00 4.09
3182 3474 3.506312 CTCTCGCTCGCTCGCTCTC 62.506 68.421 0.00 0.00 0.00 3.20
3183 3475 3.572539 CTCGCTCGCTCGCTCTCT 61.573 66.667 0.00 0.00 0.00 3.10
3184 3476 3.107104 CTCGCTCGCTCGCTCTCTT 62.107 63.158 0.00 0.00 0.00 2.85
3185 3477 2.202544 CGCTCGCTCGCTCTCTTT 60.203 61.111 0.00 0.00 0.00 2.52
3186 3478 2.220887 CGCTCGCTCGCTCTCTTTC 61.221 63.158 0.00 0.00 0.00 2.62
3187 3479 1.138671 GCTCGCTCGCTCTCTTTCT 59.861 57.895 0.00 0.00 0.00 2.52
3188 3480 0.865639 GCTCGCTCGCTCTCTTTCTC 60.866 60.000 0.00 0.00 0.00 2.87
3189 3481 0.732571 CTCGCTCGCTCTCTTTCTCT 59.267 55.000 0.00 0.00 0.00 3.10
3190 3482 0.730265 TCGCTCGCTCTCTTTCTCTC 59.270 55.000 0.00 0.00 0.00 3.20
3191 3483 0.732571 CGCTCGCTCTCTTTCTCTCT 59.267 55.000 0.00 0.00 0.00 3.10
3192 3484 1.268032 CGCTCGCTCTCTTTCTCTCTC 60.268 57.143 0.00 0.00 0.00 3.20
3232 3524 1.617839 AGCCCTCCTCCCTTCCTTG 60.618 63.158 0.00 0.00 0.00 3.61
3243 3535 0.250295 CCTTCCTTGTTCTCCGCACA 60.250 55.000 0.00 0.00 0.00 4.57
3244 3536 1.593196 CTTCCTTGTTCTCCGCACAA 58.407 50.000 0.00 0.00 33.09 3.33
3292 3584 3.569210 CCACACCAGGGCCAGACA 61.569 66.667 6.18 0.00 0.00 3.41
3386 3678 1.445582 GCTGTAACGACCCTCACGG 60.446 63.158 0.00 0.00 37.81 4.94
3430 3722 0.321653 GCTACAACCACCTCACAGGG 60.322 60.000 0.00 0.00 40.58 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.918201 GAGAATGGGGCGGCGAGG 62.918 72.222 12.98 0.00 0.00 4.63
17 18 3.350031 AAGCCAGCGGAGAATGGGG 62.350 63.158 0.00 0.00 36.57 4.96
19 20 1.821332 GGAAGCCAGCGGAGAATGG 60.821 63.158 0.00 0.00 38.68 3.16
20 21 2.176273 CGGAAGCCAGCGGAGAATG 61.176 63.158 0.00 0.00 0.00 2.67
21 22 2.187946 CGGAAGCCAGCGGAGAAT 59.812 61.111 0.00 0.00 0.00 2.40
34 35 0.462937 CAATACGATGGTGGGCGGAA 60.463 55.000 0.00 0.00 0.00 4.30
35 36 1.145156 CAATACGATGGTGGGCGGA 59.855 57.895 0.00 0.00 0.00 5.54
36 37 2.542907 GCAATACGATGGTGGGCGG 61.543 63.158 0.00 0.00 0.00 6.13
37 38 2.542907 GGCAATACGATGGTGGGCG 61.543 63.158 0.00 0.00 0.00 6.13
38 39 2.542907 CGGCAATACGATGGTGGGC 61.543 63.158 0.00 0.00 35.47 5.36
41 42 1.643292 CAGCGGCAATACGATGGTG 59.357 57.895 1.45 0.00 45.53 4.17
42 43 4.124910 CAGCGGCAATACGATGGT 57.875 55.556 1.45 0.00 45.53 3.55
45 46 2.591715 GGGCAGCGGCAATACGAT 60.592 61.111 11.88 0.00 43.71 3.73
46 47 4.849310 GGGGCAGCGGCAATACGA 62.849 66.667 11.88 0.00 43.71 3.43
48 49 2.753849 TTGGGGCAGCGGCAATAC 60.754 61.111 11.88 0.00 43.71 1.89
50 51 4.684134 AGTTGGGGCAGCGGCAAT 62.684 61.111 11.88 0.00 43.71 3.56
55 56 4.785453 GGGAGAGTTGGGGCAGCG 62.785 72.222 0.00 0.00 0.00 5.18
56 57 3.334054 AGGGAGAGTTGGGGCAGC 61.334 66.667 0.00 0.00 0.00 5.25
59 60 1.338890 GGTAGAGGGAGAGTTGGGGC 61.339 65.000 0.00 0.00 0.00 5.80
60 61 0.691413 GGGTAGAGGGAGAGTTGGGG 60.691 65.000 0.00 0.00 0.00 4.96
61 62 0.340208 AGGGTAGAGGGAGAGTTGGG 59.660 60.000 0.00 0.00 0.00 4.12
63 64 2.245287 AGGTAGGGTAGAGGGAGAGTTG 59.755 54.545 0.00 0.00 0.00 3.16
64 65 2.515005 GAGGTAGGGTAGAGGGAGAGTT 59.485 54.545 0.00 0.00 0.00 3.01
65 66 2.137702 GAGGTAGGGTAGAGGGAGAGT 58.862 57.143 0.00 0.00 0.00 3.24
66 67 2.424793 AGAGGTAGGGTAGAGGGAGAG 58.575 57.143 0.00 0.00 0.00 3.20
67 68 2.514582 CAAGAGGTAGGGTAGAGGGAGA 59.485 54.545 0.00 0.00 0.00 3.71
68 69 2.245287 ACAAGAGGTAGGGTAGAGGGAG 59.755 54.545 0.00 0.00 0.00 4.30
69 70 2.295143 ACAAGAGGTAGGGTAGAGGGA 58.705 52.381 0.00 0.00 0.00 4.20
70 71 2.850695 ACAAGAGGTAGGGTAGAGGG 57.149 55.000 0.00 0.00 0.00 4.30
72 73 3.955551 GGAGAACAAGAGGTAGGGTAGAG 59.044 52.174 0.00 0.00 0.00 2.43
74 75 3.983821 AGGAGAACAAGAGGTAGGGTAG 58.016 50.000 0.00 0.00 0.00 3.18
75 76 4.351127 GAAGGAGAACAAGAGGTAGGGTA 58.649 47.826 0.00 0.00 0.00 3.69
95 96 3.384532 GGGGCTACCGTCACCGAA 61.385 66.667 0.00 0.00 37.78 4.30
98 99 4.091939 GTGGGGGCTACCGTCACC 62.092 72.222 0.00 0.00 41.60 4.02
99 100 4.091939 GGTGGGGGCTACCGTCAC 62.092 72.222 0.00 0.00 41.60 3.67
111 112 2.933287 TAGTGCAGGTGGGGTGGG 60.933 66.667 0.00 0.00 0.00 4.61
112 113 2.185310 GACTAGTGCAGGTGGGGTGG 62.185 65.000 0.00 0.00 0.00 4.61
114 115 1.152118 TGACTAGTGCAGGTGGGGT 60.152 57.895 0.00 0.00 0.00 4.95
115 116 1.599047 CTGACTAGTGCAGGTGGGG 59.401 63.158 0.00 0.00 0.00 4.96
117 118 1.078848 GGCTGACTAGTGCAGGTGG 60.079 63.158 18.15 0.00 34.00 4.61
119 120 3.393360 GGGCTGACTAGTGCAGGT 58.607 61.111 18.15 0.00 34.00 4.00
444 445 0.179000 ATGAAGGCGGCGAAGAGATT 59.821 50.000 12.98 0.00 0.00 2.40
445 446 0.249657 GATGAAGGCGGCGAAGAGAT 60.250 55.000 12.98 0.00 0.00 2.75
446 447 1.141881 GATGAAGGCGGCGAAGAGA 59.858 57.895 12.98 0.00 0.00 3.10
448 449 1.153568 CAGATGAAGGCGGCGAAGA 60.154 57.895 12.98 0.00 0.00 2.87
449 450 2.176273 CCAGATGAAGGCGGCGAAG 61.176 63.158 12.98 0.00 0.00 3.79
450 451 2.125147 CCAGATGAAGGCGGCGAA 60.125 61.111 12.98 0.00 0.00 4.70
451 452 4.161295 CCCAGATGAAGGCGGCGA 62.161 66.667 12.98 0.00 0.00 5.54
452 453 3.466791 ATCCCAGATGAAGGCGGCG 62.467 63.158 0.51 0.51 0.00 6.46
466 467 4.778143 AACGGACTGCGGCATCCC 62.778 66.667 19.12 14.93 0.00 3.85
493 494 3.485346 TTGGAGACGGGGGTTGTGC 62.485 63.158 0.00 0.00 0.00 4.57
510 511 2.030562 CCACGGCAAGACCTCGTT 59.969 61.111 0.00 0.00 34.73 3.85
534 535 0.536687 AATGATGAGCATCGGCCCTG 60.537 55.000 0.00 0.00 42.56 4.45
535 536 0.536687 CAATGATGAGCATCGGCCCT 60.537 55.000 0.00 0.00 42.56 5.19
540 541 1.082300 GCGGCAATGATGAGCATCG 60.082 57.895 6.04 0.00 40.63 3.84
551 552 1.796151 CGATGTGACAAGCGGCAAT 59.204 52.632 1.45 0.00 0.00 3.56
586 587 3.432588 CGTCCGTCGACTCTGCCT 61.433 66.667 14.70 0.00 42.86 4.75
604 605 6.658188 TTTGGTCCCTCGAATTTTTACAAT 57.342 33.333 0.00 0.00 0.00 2.71
664 665 3.584834 GCACTGGCGGTTTCAATTAAAT 58.415 40.909 0.00 0.00 0.00 1.40
693 694 4.576873 TCGTGCCATCTTCTTCTAGTCTAG 59.423 45.833 0.00 0.00 0.00 2.43
916 922 2.486191 GGCATGGAGGATGGAGTAACAG 60.486 54.545 0.00 0.00 31.99 3.16
963 990 2.359169 GCTGATCAGTGGGACGGGA 61.359 63.158 23.38 0.00 0.00 5.14
964 991 2.187946 GCTGATCAGTGGGACGGG 59.812 66.667 23.38 0.00 0.00 5.28
967 994 0.179034 GATGGGCTGATCAGTGGGAC 60.179 60.000 23.38 6.66 0.00 4.46
968 995 0.326904 AGATGGGCTGATCAGTGGGA 60.327 55.000 23.38 6.47 0.00 4.37
969 996 0.108207 GAGATGGGCTGATCAGTGGG 59.892 60.000 23.38 0.00 0.00 4.61
970 997 0.108207 GGAGATGGGCTGATCAGTGG 59.892 60.000 23.38 0.00 0.00 4.00
971 998 1.070445 GAGGAGATGGGCTGATCAGTG 59.930 57.143 23.38 0.72 0.00 3.66
972 999 1.062275 AGAGGAGATGGGCTGATCAGT 60.062 52.381 23.38 3.79 0.00 3.41
973 1000 1.619827 GAGAGGAGATGGGCTGATCAG 59.380 57.143 18.84 18.84 0.00 2.90
975 1002 0.975887 GGAGAGGAGATGGGCTGATC 59.024 60.000 0.00 0.00 0.00 2.92
976 1003 0.473501 GGGAGAGGAGATGGGCTGAT 60.474 60.000 0.00 0.00 0.00 2.90
977 1004 1.074926 GGGAGAGGAGATGGGCTGA 60.075 63.158 0.00 0.00 0.00 4.26
980 1007 3.237741 CGGGGAGAGGAGATGGGC 61.238 72.222 0.00 0.00 0.00 5.36
982 1009 3.237741 GGCGGGGAGAGGAGATGG 61.238 72.222 0.00 0.00 0.00 3.51
983 1010 1.840650 ATGGCGGGGAGAGGAGATG 60.841 63.158 0.00 0.00 0.00 2.90
984 1011 1.840650 CATGGCGGGGAGAGGAGAT 60.841 63.158 0.00 0.00 0.00 2.75
985 1012 2.444706 CATGGCGGGGAGAGGAGA 60.445 66.667 0.00 0.00 0.00 3.71
986 1013 2.037620 CTTCATGGCGGGGAGAGGAG 62.038 65.000 0.00 0.00 0.00 3.69
987 1014 2.040442 TTCATGGCGGGGAGAGGA 59.960 61.111 0.00 0.00 0.00 3.71
1150 1177 2.196925 CCGAGGACGATGAGGAGGG 61.197 68.421 0.00 0.00 42.66 4.30
1152 1179 2.725008 GCCGAGGACGATGAGGAG 59.275 66.667 0.00 0.00 42.66 3.69
1158 1185 3.873883 GACGACGCCGAGGACGAT 61.874 66.667 0.00 0.00 42.66 3.73
1160 1187 4.517703 GAGACGACGCCGAGGACG 62.518 72.222 0.00 0.00 39.50 4.79
1161 1188 4.176851 GGAGACGACGCCGAGGAC 62.177 72.222 0.00 0.00 39.50 3.85
1220 1250 2.361483 TGTAGTACGGCGCCTCCA 60.361 61.111 26.68 6.08 34.01 3.86
1248 1278 1.079405 GTCGTCGATGAAGGGGCAA 60.079 57.895 9.35 0.00 0.00 4.52
1489 1525 3.243068 GCTTCCATCAGAAACAACACGTT 60.243 43.478 0.00 0.00 40.50 3.99
1492 1528 5.452777 GTTAGCTTCCATCAGAAACAACAC 58.547 41.667 0.00 0.00 32.88 3.32
1511 1556 2.625737 CTGCATGTCTCCACTGGTTAG 58.374 52.381 0.00 0.00 0.00 2.34
2147 2381 8.924691 TCACAACATTTCATTTAATTTAGCAGC 58.075 29.630 0.00 0.00 0.00 5.25
2149 2383 9.979578 AGTCACAACATTTCATTTAATTTAGCA 57.020 25.926 0.00 0.00 0.00 3.49
2153 2387 9.180678 GTCGAGTCACAACATTTCATTTAATTT 57.819 29.630 0.00 0.00 0.00 1.82
2154 2388 8.567948 AGTCGAGTCACAACATTTCATTTAATT 58.432 29.630 0.00 0.00 0.00 1.40
2155 2389 8.099364 AGTCGAGTCACAACATTTCATTTAAT 57.901 30.769 0.00 0.00 0.00 1.40
2156 2390 7.490962 AGTCGAGTCACAACATTTCATTTAA 57.509 32.000 0.00 0.00 0.00 1.52
2216 2474 4.176851 GTCCCTCCTCGTCGTCGC 62.177 72.222 0.00 0.00 36.96 5.19
2217 2475 3.862402 CGTCCCTCCTCGTCGTCG 61.862 72.222 0.00 0.00 38.55 5.12
2435 2704 2.357034 GACAAGCGCCCGAACTCA 60.357 61.111 2.29 0.00 0.00 3.41
2438 2707 2.251371 GTTGACAAGCGCCCGAAC 59.749 61.111 2.29 0.00 0.00 3.95
2447 2716 0.031585 TCACTCGGACGGTTGACAAG 59.968 55.000 0.00 0.00 0.00 3.16
2449 2718 0.677288 AATCACTCGGACGGTTGACA 59.323 50.000 0.00 0.00 0.00 3.58
2455 2724 4.243270 AGACTTTTTAATCACTCGGACGG 58.757 43.478 0.00 0.00 0.00 4.79
2460 2729 8.734933 CGTGTATAGAGACTTTTTAATCACTCG 58.265 37.037 0.00 0.00 0.00 4.18
2461 2730 9.021863 CCGTGTATAGAGACTTTTTAATCACTC 57.978 37.037 0.00 0.00 0.00 3.51
2467 2736 5.104374 CGGCCGTGTATAGAGACTTTTTAA 58.896 41.667 19.50 0.00 0.00 1.52
2468 2737 4.158394 ACGGCCGTGTATAGAGACTTTTTA 59.842 41.667 33.75 0.00 0.00 1.52
2471 2740 2.097825 ACGGCCGTGTATAGAGACTTT 58.902 47.619 33.75 0.00 0.00 2.66
2472 2741 1.404391 CACGGCCGTGTATAGAGACTT 59.596 52.381 42.92 10.35 40.91 3.01
2473 2742 1.022735 CACGGCCGTGTATAGAGACT 58.977 55.000 42.92 10.58 40.91 3.24
2474 2743 1.019673 TCACGGCCGTGTATAGAGAC 58.980 55.000 46.56 0.00 45.55 3.36
2475 2744 1.977056 ATCACGGCCGTGTATAGAGA 58.023 50.000 46.56 31.69 45.55 3.10
2476 2745 2.293677 AGAATCACGGCCGTGTATAGAG 59.706 50.000 46.56 27.35 45.55 2.43
2477 2746 2.304092 AGAATCACGGCCGTGTATAGA 58.696 47.619 46.56 33.05 45.55 1.98
2478 2747 2.795175 AGAATCACGGCCGTGTATAG 57.205 50.000 46.56 28.77 45.55 1.31
2479 2748 3.119065 TCAAAGAATCACGGCCGTGTATA 60.119 43.478 46.56 33.75 45.55 1.47
2480 2749 2.006888 CAAAGAATCACGGCCGTGTAT 58.993 47.619 46.56 37.63 45.55 2.29
2481 2750 1.001068 TCAAAGAATCACGGCCGTGTA 59.999 47.619 46.56 35.58 45.55 2.90
2482 2751 0.250124 TCAAAGAATCACGGCCGTGT 60.250 50.000 46.56 34.60 45.55 4.49
2483 2752 1.086696 ATCAAAGAATCACGGCCGTG 58.913 50.000 45.04 45.04 46.64 4.94
2484 2753 1.737793 GAATCAAAGAATCACGGCCGT 59.262 47.619 28.70 28.70 0.00 5.68
2485 2754 2.009774 AGAATCAAAGAATCACGGCCG 58.990 47.619 26.86 26.86 0.00 6.13
2486 2755 3.440173 TCAAGAATCAAAGAATCACGGCC 59.560 43.478 0.00 0.00 0.00 6.13
2487 2756 4.393062 TCTCAAGAATCAAAGAATCACGGC 59.607 41.667 0.00 0.00 0.00 5.68
2501 2770 3.107642 ACCGTTTCACGTCTCAAGAAT 57.892 42.857 0.00 0.00 40.58 2.40
2502 2771 2.589798 ACCGTTTCACGTCTCAAGAA 57.410 45.000 0.00 0.00 40.58 2.52
2507 2776 1.525619 CCTTCAACCGTTTCACGTCTC 59.474 52.381 0.00 0.00 40.58 3.36
2519 2788 7.047891 TGATCACTATACATTGTCCTTCAACC 58.952 38.462 0.00 0.00 38.97 3.77
2521 2790 7.653311 CGATGATCACTATACATTGTCCTTCAA 59.347 37.037 0.00 0.00 40.53 2.69
2522 2791 7.147976 CGATGATCACTATACATTGTCCTTCA 58.852 38.462 0.00 0.00 0.00 3.02
2523 2792 7.115520 CACGATGATCACTATACATTGTCCTTC 59.884 40.741 0.00 0.00 36.77 3.46
2524 2793 6.925718 CACGATGATCACTATACATTGTCCTT 59.074 38.462 0.00 0.00 36.77 3.36
2525 2794 6.450545 CACGATGATCACTATACATTGTCCT 58.549 40.000 0.00 0.00 36.77 3.85
2526 2795 5.119279 GCACGATGATCACTATACATTGTCC 59.881 44.000 0.00 0.00 36.77 4.02
2527 2796 5.923114 AGCACGATGATCACTATACATTGTC 59.077 40.000 0.00 0.00 36.77 3.18
2530 2799 5.698089 CCAAGCACGATGATCACTATACATT 59.302 40.000 0.00 0.00 0.00 2.71
2531 2800 5.233225 CCAAGCACGATGATCACTATACAT 58.767 41.667 0.00 0.00 0.00 2.29
2532 2801 4.501400 CCCAAGCACGATGATCACTATACA 60.501 45.833 0.00 0.00 0.00 2.29
2534 2803 3.641436 ACCCAAGCACGATGATCACTATA 59.359 43.478 0.00 0.00 0.00 1.31
2536 2805 1.831106 ACCCAAGCACGATGATCACTA 59.169 47.619 0.00 0.00 0.00 2.74
2537 2806 0.615331 ACCCAAGCACGATGATCACT 59.385 50.000 0.00 0.00 0.00 3.41
2538 2807 1.009829 GACCCAAGCACGATGATCAC 58.990 55.000 0.00 0.00 0.00 3.06
2539 2808 0.612744 TGACCCAAGCACGATGATCA 59.387 50.000 0.00 0.00 0.00 2.92
2542 2811 0.396435 ACTTGACCCAAGCACGATGA 59.604 50.000 6.61 0.00 44.43 2.92
2543 2812 0.518636 CACTTGACCCAAGCACGATG 59.481 55.000 6.61 0.00 44.43 3.84
2544 2813 0.606401 CCACTTGACCCAAGCACGAT 60.606 55.000 6.61 0.00 44.43 3.73
2545 2814 1.227823 CCACTTGACCCAAGCACGA 60.228 57.895 6.61 0.00 44.43 4.35
2546 2815 2.260869 CCCACTTGACCCAAGCACG 61.261 63.158 6.61 0.00 44.43 5.34
2547 2816 2.564721 GCCCACTTGACCCAAGCAC 61.565 63.158 6.61 0.00 44.43 4.40
2548 2817 2.203480 GCCCACTTGACCCAAGCA 60.203 61.111 6.61 0.00 44.43 3.91
2549 2818 3.365265 CGCCCACTTGACCCAAGC 61.365 66.667 6.61 0.00 44.43 4.01
2555 2824 4.681978 ACGAGGCGCCCACTTGAC 62.682 66.667 26.15 5.17 0.00 3.18
2565 2843 4.907034 CCGACGATCCACGAGGCG 62.907 72.222 0.00 0.00 45.77 5.52
2568 2846 2.266376 TTCTGCCGACGATCCACGAG 62.266 60.000 0.00 0.00 45.77 4.18
2591 2869 3.578688 CTTCCAAAGCTGGTGCAAATAC 58.421 45.455 0.00 0.00 43.97 1.89
2592 2870 3.940209 CTTCCAAAGCTGGTGCAAATA 57.060 42.857 0.00 0.00 43.97 1.40
2593 2871 2.825861 CTTCCAAAGCTGGTGCAAAT 57.174 45.000 0.00 0.00 43.97 2.32
2605 2883 3.497942 GGAGGGTCTACTTTGCTTCCAAA 60.498 47.826 0.00 0.00 38.56 3.28
2606 2884 2.039879 GGAGGGTCTACTTTGCTTCCAA 59.960 50.000 0.00 0.00 0.00 3.53
2607 2885 1.628846 GGAGGGTCTACTTTGCTTCCA 59.371 52.381 0.00 0.00 0.00 3.53
2608 2886 1.628846 TGGAGGGTCTACTTTGCTTCC 59.371 52.381 0.00 0.00 0.00 3.46
2609 2887 2.303311 AGTGGAGGGTCTACTTTGCTTC 59.697 50.000 0.00 0.00 34.34 3.86
2610 2888 2.339769 AGTGGAGGGTCTACTTTGCTT 58.660 47.619 0.00 0.00 34.34 3.91
2611 2889 2.031495 AGTGGAGGGTCTACTTTGCT 57.969 50.000 0.00 0.00 34.34 3.91
2622 2900 2.505819 ACTAGCCATGTTTAGTGGAGGG 59.494 50.000 5.78 0.00 39.12 4.30
2657 2935 3.187227 ACTCATTTAAGCAAGTCAGCGTG 59.813 43.478 0.00 0.00 40.15 5.34
2661 2939 8.173775 CAGAACATACTCATTTAAGCAAGTCAG 58.826 37.037 0.00 0.00 0.00 3.51
2674 2952 4.486090 GACACGACACAGAACATACTCAT 58.514 43.478 0.00 0.00 0.00 2.90
2683 2961 0.590481 CGACACGACACGACACAGAA 60.590 55.000 0.00 0.00 0.00 3.02
2684 2962 1.010462 CGACACGACACGACACAGA 60.010 57.895 0.00 0.00 0.00 3.41
2685 2963 1.298116 ACGACACGACACGACACAG 60.298 57.895 0.00 0.00 0.00 3.66
2686 2964 1.584225 CACGACACGACACGACACA 60.584 57.895 0.00 0.00 0.00 3.72
2687 2965 2.290789 CCACGACACGACACGACAC 61.291 63.158 0.00 0.00 0.00 3.67
2688 2966 2.025013 CCACGACACGACACGACA 59.975 61.111 0.00 0.00 0.00 4.35
2689 2967 3.392440 GCCACGACACGACACGAC 61.392 66.667 0.00 0.00 0.00 4.34
2690 2968 4.634133 GGCCACGACACGACACGA 62.634 66.667 0.00 0.00 0.00 4.35
2691 2969 4.934942 TGGCCACGACACGACACG 62.935 66.667 0.00 0.00 0.00 4.49
2692 2970 3.335534 GTGGCCACGACACGACAC 61.336 66.667 22.49 0.00 29.47 3.67
2698 2976 0.036164 ATTAGCAAGTGGCCACGACA 59.964 50.000 29.68 12.42 46.50 4.35
2699 2977 1.165270 AATTAGCAAGTGGCCACGAC 58.835 50.000 29.68 21.88 46.50 4.34
2700 2978 2.027561 ACTAATTAGCAAGTGGCCACGA 60.028 45.455 29.68 13.04 46.50 4.35
2702 2980 3.081804 ACACTAATTAGCAAGTGGCCAC 58.918 45.455 29.22 29.22 45.94 5.01
2704 2982 4.022329 ACAAACACTAATTAGCAAGTGGCC 60.022 41.667 12.54 0.00 45.94 5.36
2705 2983 5.121221 ACAAACACTAATTAGCAAGTGGC 57.879 39.130 12.54 0.00 45.94 5.01
2706 2984 6.074356 GCAAACAAACACTAATTAGCAAGTGG 60.074 38.462 12.54 7.69 45.94 4.00
2707 2985 6.697019 AGCAAACAAACACTAATTAGCAAGTG 59.303 34.615 12.54 8.35 46.84 3.16
2708 2986 6.805713 AGCAAACAAACACTAATTAGCAAGT 58.194 32.000 12.54 6.24 0.00 3.16
2710 2988 7.010923 CCAAAGCAAACAAACACTAATTAGCAA 59.989 33.333 12.54 0.00 0.00 3.91
2711 2989 6.478344 CCAAAGCAAACAAACACTAATTAGCA 59.522 34.615 12.54 0.00 0.00 3.49
2713 2991 7.704472 TCACCAAAGCAAACAAACACTAATTAG 59.296 33.333 11.05 11.05 0.00 1.73
2714 2992 7.489757 GTCACCAAAGCAAACAAACACTAATTA 59.510 33.333 0.00 0.00 0.00 1.40
2715 2993 6.312672 GTCACCAAAGCAAACAAACACTAATT 59.687 34.615 0.00 0.00 0.00 1.40
2716 2994 5.810074 GTCACCAAAGCAAACAAACACTAAT 59.190 36.000 0.00 0.00 0.00 1.73
2718 2996 4.461081 AGTCACCAAAGCAAACAAACACTA 59.539 37.500 0.00 0.00 0.00 2.74
2720 2998 3.584834 AGTCACCAAAGCAAACAAACAC 58.415 40.909 0.00 0.00 0.00 3.32
2723 3001 3.999663 CCAAAGTCACCAAAGCAAACAAA 59.000 39.130 0.00 0.00 0.00 2.83
2724 3002 3.259374 TCCAAAGTCACCAAAGCAAACAA 59.741 39.130 0.00 0.00 0.00 2.83
2725 3003 2.828520 TCCAAAGTCACCAAAGCAAACA 59.171 40.909 0.00 0.00 0.00 2.83
2726 3004 3.119137 ACTCCAAAGTCACCAAAGCAAAC 60.119 43.478 0.00 0.00 0.00 2.93
2727 3005 3.096092 ACTCCAAAGTCACCAAAGCAAA 58.904 40.909 0.00 0.00 0.00 3.68
2728 3006 2.426738 CACTCCAAAGTCACCAAAGCAA 59.573 45.455 0.00 0.00 31.71 3.91
2729 3007 2.023673 CACTCCAAAGTCACCAAAGCA 58.976 47.619 0.00 0.00 31.71 3.91
2730 3008 1.338020 CCACTCCAAAGTCACCAAAGC 59.662 52.381 0.00 0.00 31.71 3.51
2731 3009 2.880890 CTCCACTCCAAAGTCACCAAAG 59.119 50.000 0.00 0.00 31.71 2.77
2732 3010 2.422803 CCTCCACTCCAAAGTCACCAAA 60.423 50.000 0.00 0.00 31.71 3.28
2742 3020 2.938301 TGGACAACCTCCACTCCAA 58.062 52.632 0.00 0.00 44.99 3.53
2755 3033 3.581755 CCGAAACGTTTCTCTATGGACA 58.418 45.455 31.88 0.00 35.07 4.02
2756 3034 2.928116 CCCGAAACGTTTCTCTATGGAC 59.072 50.000 31.88 9.50 35.07 4.02
2757 3035 2.827322 TCCCGAAACGTTTCTCTATGGA 59.173 45.455 31.88 25.04 35.07 3.41
2758 3036 2.928116 GTCCCGAAACGTTTCTCTATGG 59.072 50.000 31.88 25.22 35.07 2.74
2759 3037 2.597305 CGTCCCGAAACGTTTCTCTATG 59.403 50.000 31.88 19.09 37.86 2.23
2760 3038 2.416431 CCGTCCCGAAACGTTTCTCTAT 60.416 50.000 31.88 3.42 41.01 1.98
2761 3039 1.068333 CCGTCCCGAAACGTTTCTCTA 60.068 52.381 31.88 17.53 41.01 2.43
2762 3040 0.319297 CCGTCCCGAAACGTTTCTCT 60.319 55.000 31.88 4.61 41.01 3.10
2763 3041 0.318955 TCCGTCCCGAAACGTTTCTC 60.319 55.000 31.88 19.99 41.01 2.87
2764 3042 0.319297 CTCCGTCCCGAAACGTTTCT 60.319 55.000 31.88 5.79 41.01 2.52
2765 3043 0.598419 ACTCCGTCCCGAAACGTTTC 60.598 55.000 27.37 27.37 41.01 2.78
2766 3044 0.877213 CACTCCGTCCCGAAACGTTT 60.877 55.000 14.57 14.57 41.01 3.60
2808 3086 2.172483 GAGGGAGTGCACATGGACGT 62.172 60.000 21.04 5.44 41.53 4.34
2817 3095 2.449031 AATCGTTGCGAGGGAGTGCA 62.449 55.000 0.00 0.00 39.91 4.57
2842 3120 1.671054 CCACATCCCACGTTTCGCT 60.671 57.895 0.00 0.00 0.00 4.93
2847 3125 1.846124 AGGGTCCACATCCCACGTT 60.846 57.895 3.79 0.00 46.82 3.99
2851 3129 2.204136 AGCAGGGTCCACATCCCA 60.204 61.111 3.79 0.00 46.82 4.37
2877 3155 0.719465 AAATACGAAGAAGGCACGCG 59.281 50.000 3.53 3.53 0.00 6.01
2889 3167 3.947910 AGGACGTGGAAGAAAATACGA 57.052 42.857 0.00 0.00 39.61 3.43
2893 3171 5.243207 ACGATAAAGGACGTGGAAGAAAAT 58.757 37.500 0.00 0.00 41.17 1.82
2905 3183 1.269154 GCGAGGAGGACGATAAAGGAC 60.269 57.143 0.00 0.00 0.00 3.85
2910 3188 1.880675 GAGATGCGAGGAGGACGATAA 59.119 52.381 0.00 0.00 0.00 1.75
2922 3200 2.700371 AGAGAGAGAGAGAGAGATGCGA 59.300 50.000 0.00 0.00 0.00 5.10
2924 3202 4.040217 AGAGAGAGAGAGAGAGAGAGATGC 59.960 50.000 0.00 0.00 0.00 3.91
2925 3203 5.539574 AGAGAGAGAGAGAGAGAGAGAGATG 59.460 48.000 0.00 0.00 0.00 2.90
2926 3204 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
2927 3205 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3149 3441 3.197766 AGCGAGAGAAAGAGAGAGAGAGA 59.802 47.826 0.00 0.00 0.00 3.10
3150 3442 3.535561 AGCGAGAGAAAGAGAGAGAGAG 58.464 50.000 0.00 0.00 0.00 3.20
3151 3443 3.531538 GAGCGAGAGAAAGAGAGAGAGA 58.468 50.000 0.00 0.00 0.00 3.10
3152 3444 2.285220 CGAGCGAGAGAAAGAGAGAGAG 59.715 54.545 0.00 0.00 0.00 3.20
3153 3445 2.276201 CGAGCGAGAGAAAGAGAGAGA 58.724 52.381 0.00 0.00 0.00 3.10
3154 3446 1.268032 GCGAGCGAGAGAAAGAGAGAG 60.268 57.143 0.00 0.00 0.00 3.20
3155 3447 0.730265 GCGAGCGAGAGAAAGAGAGA 59.270 55.000 0.00 0.00 0.00 3.10
3156 3448 0.732571 AGCGAGCGAGAGAAAGAGAG 59.267 55.000 0.00 0.00 0.00 3.20
3157 3449 0.730265 GAGCGAGCGAGAGAAAGAGA 59.270 55.000 0.00 0.00 0.00 3.10
3158 3450 0.588730 CGAGCGAGCGAGAGAAAGAG 60.589 60.000 0.00 0.00 0.00 2.85
3159 3451 1.425825 CGAGCGAGCGAGAGAAAGA 59.574 57.895 0.00 0.00 0.00 2.52
3160 3452 2.220887 GCGAGCGAGCGAGAGAAAG 61.221 63.158 1.41 0.00 0.00 2.62
3161 3453 2.202492 GCGAGCGAGCGAGAGAAA 60.202 61.111 1.41 0.00 0.00 2.52
3162 3454 3.102107 GAGCGAGCGAGCGAGAGAA 62.102 63.158 1.41 0.00 43.00 2.87
3163 3455 3.568743 GAGCGAGCGAGCGAGAGA 61.569 66.667 1.41 0.00 43.00 3.10
3164 3456 3.506312 GAGAGCGAGCGAGCGAGAG 62.506 68.421 1.41 0.00 43.00 3.20
3165 3457 3.568743 GAGAGCGAGCGAGCGAGA 61.569 66.667 1.41 0.00 43.00 4.04
3166 3458 2.591129 AAAGAGAGCGAGCGAGCGAG 62.591 60.000 1.41 0.00 43.00 5.03
3167 3459 2.585170 GAAAGAGAGCGAGCGAGCGA 62.585 60.000 1.41 0.00 43.00 4.93
3168 3460 2.202544 AAAGAGAGCGAGCGAGCG 60.203 61.111 0.00 0.00 43.00 5.03
3169 3461 0.865639 GAGAAAGAGAGCGAGCGAGC 60.866 60.000 0.00 0.00 37.41 5.03
3170 3462 0.732571 AGAGAAAGAGAGCGAGCGAG 59.267 55.000 0.00 0.00 0.00 5.03
3171 3463 0.730265 GAGAGAAAGAGAGCGAGCGA 59.270 55.000 0.00 0.00 0.00 4.93
3172 3464 0.732571 AGAGAGAAAGAGAGCGAGCG 59.267 55.000 0.00 0.00 0.00 5.03
3173 3465 2.017049 AGAGAGAGAAAGAGAGCGAGC 58.983 52.381 0.00 0.00 0.00 5.03
3174 3466 2.285220 CGAGAGAGAGAAAGAGAGCGAG 59.715 54.545 0.00 0.00 0.00 5.03
3175 3467 2.276201 CGAGAGAGAGAAAGAGAGCGA 58.724 52.381 0.00 0.00 0.00 4.93
3176 3468 1.268032 GCGAGAGAGAGAAAGAGAGCG 60.268 57.143 0.00 0.00 0.00 5.03
3177 3469 1.742831 TGCGAGAGAGAGAAAGAGAGC 59.257 52.381 0.00 0.00 0.00 4.09
3178 3470 2.223340 GCTGCGAGAGAGAGAAAGAGAG 60.223 54.545 0.00 0.00 0.00 3.20
3179 3471 1.742831 GCTGCGAGAGAGAGAAAGAGA 59.257 52.381 0.00 0.00 0.00 3.10
3180 3472 1.531677 CGCTGCGAGAGAGAGAAAGAG 60.532 57.143 18.66 0.00 0.00 2.85
3181 3473 0.449786 CGCTGCGAGAGAGAGAAAGA 59.550 55.000 18.66 0.00 0.00 2.52
3182 3474 1.139226 GCGCTGCGAGAGAGAGAAAG 61.139 60.000 28.07 0.00 0.00 2.62
3183 3475 1.153939 GCGCTGCGAGAGAGAGAAA 60.154 57.895 28.07 0.00 0.00 2.52
3184 3476 2.487428 GCGCTGCGAGAGAGAGAA 59.513 61.111 28.07 0.00 0.00 2.87
3185 3477 3.513438 GGCGCTGCGAGAGAGAGA 61.513 66.667 28.07 0.00 0.00 3.10
3186 3478 3.468266 GAGGCGCTGCGAGAGAGAG 62.468 68.421 28.07 0.00 0.00 3.20
3187 3479 3.513438 GAGGCGCTGCGAGAGAGA 61.513 66.667 28.07 0.00 0.00 3.10
3188 3480 4.567385 GGAGGCGCTGCGAGAGAG 62.567 72.222 28.07 0.00 0.00 3.20
3190 3482 4.567385 GAGGAGGCGCTGCGAGAG 62.567 72.222 28.07 0.00 0.00 3.20
3210 3502 2.690510 AAGGGAGGAGGGCTCTGC 60.691 66.667 0.00 0.00 0.00 4.26
3232 3524 2.853914 GCTCGTTGTGCGGAGAAC 59.146 61.111 6.89 6.89 41.72 3.01
3243 3535 2.342648 GGGAGGTTCACGCTCGTT 59.657 61.111 0.00 0.00 0.00 3.85
3244 3536 3.692406 GGGGAGGTTCACGCTCGT 61.692 66.667 0.00 0.00 0.00 4.18
3250 3542 1.423794 TTGTGGAGGGGGAGGTTCAC 61.424 60.000 0.00 0.00 0.00 3.18
3253 3545 0.704664 GATTTGTGGAGGGGGAGGTT 59.295 55.000 0.00 0.00 0.00 3.50
3292 3584 1.202580 GCGTGAATGGATGTAGGAGCT 60.203 52.381 0.00 0.00 0.00 4.09
3327 3619 1.880819 AAAGGTATGGCCGTCGTCGT 61.881 55.000 0.00 0.00 43.70 4.34
3351 3643 2.031120 CAGCTTCAAGGGTTTGGAACA 58.969 47.619 0.00 0.00 34.97 3.18
3393 3685 1.620413 GCATTCTGCGCCAAGTTTGC 61.620 55.000 4.18 6.90 31.71 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.