Multiple sequence alignment - TraesCS6A01G289300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G289300 chr6A 100.000 4784 0 0 1 4784 521446834 521451617 0.000000e+00 8835
1 TraesCS6A01G289300 chr6A 87.395 119 8 5 324 437 270792316 270792432 3.890000e-26 130
2 TraesCS6A01G289300 chr6B 94.491 3576 135 34 1224 4784 567394095 567397623 0.000000e+00 5456
3 TraesCS6A01G289300 chr6B 93.765 818 29 9 428 1237 567393272 567394075 0.000000e+00 1208
4 TraesCS6A01G289300 chr6D 96.829 2397 50 15 2393 4784 379576381 379574006 0.000000e+00 3982
5 TraesCS6A01G289300 chr6D 93.642 1101 47 8 1299 2391 379577654 379576569 0.000000e+00 1624
6 TraesCS6A01G289300 chr6D 91.390 662 34 10 652 1300 379578444 379577793 0.000000e+00 885
7 TraesCS6A01G289300 chr6D 91.111 315 19 5 1 312 27484983 27484675 7.400000e-113 418
8 TraesCS6A01G289300 chr6D 90.268 298 20 5 1 292 299211408 299211114 9.720000e-102 381
9 TraesCS6A01G289300 chr3A 92.517 441 21 7 1 430 506240960 506241399 5.260000e-174 621
10 TraesCS6A01G289300 chr3A 83.448 435 48 14 3 430 650103811 650103394 2.700000e-102 383
11 TraesCS6A01G289300 chr3D 87.067 433 30 16 1 430 308785683 308786092 2.610000e-127 466
12 TraesCS6A01G289300 chr2D 86.499 437 39 16 1 430 476481494 476481917 3.370000e-126 462
13 TraesCS6A01G289300 chr5B 93.962 265 11 3 76 335 692818333 692818597 3.470000e-106 396
14 TraesCS6A01G289300 chr4D 80.778 437 37 19 1 430 69351718 69352114 1.010000e-76 298
15 TraesCS6A01G289300 chr5D 95.376 173 5 1 140 312 554877676 554877507 6.100000e-69 272
16 TraesCS6A01G289300 chr5D 85.484 124 12 4 1 121 554878129 554878009 1.810000e-24 124
17 TraesCS6A01G289300 chr7B 92.593 108 6 2 324 430 228809829 228809723 2.310000e-33 154
18 TraesCS6A01G289300 chr7B 92.000 100 7 1 329 427 472934330 472934429 6.460000e-29 139
19 TraesCS6A01G289300 chr7B 87.387 111 8 4 324 430 120372752 120372644 6.500000e-24 122
20 TraesCS6A01G289300 chr1B 93.069 101 5 2 330 429 8678001 8677902 3.860000e-31 147
21 TraesCS6A01G289300 chr1B 90.741 108 7 3 326 430 651903391 651903498 1.800000e-29 141
22 TraesCS6A01G289300 chr4B 91.429 105 8 1 327 430 394375315 394375419 4.990000e-30 143
23 TraesCS6A01G289300 chr4A 90.291 103 8 2 329 430 216808194 216808093 3.000000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G289300 chr6A 521446834 521451617 4783 False 8835.000000 8835 100.000000 1 4784 1 chr6A.!!$F2 4783
1 TraesCS6A01G289300 chr6B 567393272 567397623 4351 False 3332.000000 5456 94.128000 428 4784 2 chr6B.!!$F1 4356
2 TraesCS6A01G289300 chr6D 379574006 379578444 4438 True 2163.666667 3982 93.953667 652 4784 3 chr6D.!!$R3 4132

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.033642 GGCGTATGGAACCCTAGCTC 59.966 60.000 0.00 0.00 0.00 4.09 F
413 414 0.037232 GCGGAGACTACCAACTGCTT 60.037 55.000 0.00 0.00 0.00 3.91 F
1135 1150 0.163788 CGCATTCGAGGTTGTGACAC 59.836 55.000 0.00 0.00 38.10 3.67 F
1820 2018 0.889186 ACAACGAGCCATGGTTCACC 60.889 55.000 26.00 3.79 0.00 4.02 F
1856 2054 1.679898 GGTTGGACCAGGAGACCAG 59.320 63.158 8.02 0.00 38.42 4.00 F
2324 2522 2.008242 TTGGCTATTTGGGCAGTTGT 57.992 45.000 0.00 0.00 42.50 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1071 1086 0.108138 CGAGGAAGAAGGTGGCGAAT 60.108 55.000 0.00 0.00 0.00 3.34 R
2324 2522 0.590682 CACAGGTTTACATGCGTGCA 59.409 50.000 5.64 0.00 0.00 4.57 R
2706 3092 2.031870 GGCTGTCATGTAAAATCCCCC 58.968 52.381 0.00 0.00 0.00 5.40 R
3622 4013 2.224161 ACAAGGCTGAGACTGAAGTGAC 60.224 50.000 0.00 0.00 0.00 3.67 R
3698 4089 3.689347 ACACATAAGCAAATCTGAGCCA 58.311 40.909 0.00 0.00 0.00 4.75 R
4154 4545 3.313803 TCACGCTATGTTGAGCAAAAACA 59.686 39.130 1.98 1.98 42.99 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.171103 GGCGGCGTATGGAACCCT 62.171 66.667 9.37 0.00 0.00 4.34
30 31 2.799452 GGCGGCGTATGGAACCCTA 61.799 63.158 9.37 0.00 0.00 3.53
31 32 1.300697 GCGGCGTATGGAACCCTAG 60.301 63.158 9.37 0.00 0.00 3.02
32 33 1.300697 CGGCGTATGGAACCCTAGC 60.301 63.158 0.00 0.00 0.00 3.42
33 34 1.745320 CGGCGTATGGAACCCTAGCT 61.745 60.000 0.00 0.00 0.00 3.32
34 35 0.033642 GGCGTATGGAACCCTAGCTC 59.966 60.000 0.00 0.00 0.00 4.09
35 36 0.318784 GCGTATGGAACCCTAGCTCG 60.319 60.000 0.00 0.00 0.00 5.03
36 37 1.030457 CGTATGGAACCCTAGCTCGT 58.970 55.000 0.00 0.00 0.00 4.18
37 38 1.001597 CGTATGGAACCCTAGCTCGTC 60.002 57.143 0.00 0.00 0.00 4.20
38 39 2.308690 GTATGGAACCCTAGCTCGTCT 58.691 52.381 0.00 0.00 0.00 4.18
39 40 1.404843 ATGGAACCCTAGCTCGTCTC 58.595 55.000 0.00 0.00 0.00 3.36
40 41 1.030488 TGGAACCCTAGCTCGTCTCG 61.030 60.000 0.00 0.00 0.00 4.04
41 42 1.031029 GGAACCCTAGCTCGTCTCGT 61.031 60.000 0.00 0.00 0.00 4.18
42 43 0.810016 GAACCCTAGCTCGTCTCGTT 59.190 55.000 0.00 0.00 0.00 3.85
43 44 0.810016 AACCCTAGCTCGTCTCGTTC 59.190 55.000 0.00 0.00 0.00 3.95
44 45 1.031029 ACCCTAGCTCGTCTCGTTCC 61.031 60.000 0.00 0.00 0.00 3.62
45 46 0.748729 CCCTAGCTCGTCTCGTTCCT 60.749 60.000 0.00 0.00 0.00 3.36
46 47 0.658897 CCTAGCTCGTCTCGTTCCTC 59.341 60.000 0.00 0.00 0.00 3.71
47 48 0.302288 CTAGCTCGTCTCGTTCCTCG 59.698 60.000 0.00 0.00 41.41 4.63
48 49 1.088340 TAGCTCGTCTCGTTCCTCGG 61.088 60.000 0.00 0.00 40.32 4.63
49 50 2.100603 CTCGTCTCGTTCCTCGGC 59.899 66.667 0.00 0.00 40.32 5.54
50 51 3.720106 CTCGTCTCGTTCCTCGGCG 62.720 68.421 0.00 0.00 40.32 6.46
68 69 4.052229 CCGGTGGCTCGTCTCGTT 62.052 66.667 0.00 0.00 0.00 3.85
69 70 2.504244 CGGTGGCTCGTCTCGTTC 60.504 66.667 0.00 0.00 0.00 3.95
70 71 2.126031 GGTGGCTCGTCTCGTTCC 60.126 66.667 0.00 0.00 0.00 3.62
71 72 2.637383 GGTGGCTCGTCTCGTTCCT 61.637 63.158 0.00 0.00 0.00 3.36
72 73 1.153997 GTGGCTCGTCTCGTTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
73 74 2.100603 GGCTCGTCTCGTTCCTCG 59.899 66.667 0.00 0.00 41.41 4.63
74 75 2.577378 GCTCGTCTCGTTCCTCGC 60.577 66.667 0.00 0.00 39.67 5.03
75 76 2.276743 CTCGTCTCGTTCCTCGCG 60.277 66.667 0.00 0.00 39.67 5.87
76 77 3.720106 CTCGTCTCGTTCCTCGCGG 62.720 68.421 6.13 0.00 39.67 6.46
92 93 2.504244 GGCGACGACTTGTCTCGG 60.504 66.667 17.29 0.72 45.87 4.63
93 94 2.559840 GCGACGACTTGTCTCGGA 59.440 61.111 17.29 0.00 45.87 4.55
94 95 1.136984 GCGACGACTTGTCTCGGAT 59.863 57.895 17.29 0.00 45.87 4.18
95 96 0.862283 GCGACGACTTGTCTCGGATC 60.862 60.000 17.29 0.00 45.87 3.36
96 97 0.586748 CGACGACTTGTCTCGGATCG 60.587 60.000 11.75 0.00 45.87 3.69
97 98 0.248134 GACGACTTGTCTCGGATCGG 60.248 60.000 0.00 0.00 44.58 4.18
98 99 1.586564 CGACTTGTCTCGGATCGGC 60.587 63.158 0.00 0.00 0.00 5.54
99 100 1.586564 GACTTGTCTCGGATCGGCG 60.587 63.158 0.00 0.00 0.00 6.46
100 101 2.278857 CTTGTCTCGGATCGGCGG 60.279 66.667 7.21 0.00 0.00 6.13
101 102 4.508128 TTGTCTCGGATCGGCGGC 62.508 66.667 7.21 0.00 0.00 6.53
103 104 4.286320 GTCTCGGATCGGCGGCAT 62.286 66.667 10.53 1.21 0.00 4.40
104 105 3.536917 TCTCGGATCGGCGGCATT 61.537 61.111 10.53 0.00 0.00 3.56
105 106 2.588877 CTCGGATCGGCGGCATTT 60.589 61.111 10.53 0.00 0.00 2.32
106 107 2.587753 TCGGATCGGCGGCATTTC 60.588 61.111 10.53 1.76 0.00 2.17
107 108 2.894879 CGGATCGGCGGCATTTCA 60.895 61.111 10.53 0.00 0.00 2.69
108 109 2.885676 CGGATCGGCGGCATTTCAG 61.886 63.158 10.53 0.00 0.00 3.02
109 110 2.546494 GGATCGGCGGCATTTCAGG 61.546 63.158 10.53 0.00 0.00 3.86
110 111 2.516930 ATCGGCGGCATTTCAGGG 60.517 61.111 10.53 0.00 0.00 4.45
111 112 2.940890 GATCGGCGGCATTTCAGGGA 62.941 60.000 10.53 0.00 0.00 4.20
112 113 2.343475 ATCGGCGGCATTTCAGGGAT 62.343 55.000 10.53 0.00 0.00 3.85
113 114 2.546494 CGGCGGCATTTCAGGGATC 61.546 63.158 10.53 0.00 0.00 3.36
114 115 2.196245 GGCGGCATTTCAGGGATCC 61.196 63.158 1.92 1.92 0.00 3.36
115 116 2.546494 GCGGCATTTCAGGGATCCG 61.546 63.158 5.45 0.00 39.81 4.18
116 117 2.546494 CGGCATTTCAGGGATCCGC 61.546 63.158 5.45 0.93 0.00 5.54
117 118 2.546494 GGCATTTCAGGGATCCGCG 61.546 63.158 5.45 0.00 0.00 6.46
118 119 1.523711 GCATTTCAGGGATCCGCGA 60.524 57.895 8.23 1.16 0.00 5.87
119 120 1.502163 GCATTTCAGGGATCCGCGAG 61.502 60.000 8.23 0.00 0.00 5.03
120 121 1.227674 ATTTCAGGGATCCGCGAGC 60.228 57.895 8.23 0.00 0.00 5.03
121 122 2.978452 ATTTCAGGGATCCGCGAGCG 62.978 60.000 8.23 10.86 39.44 5.03
142 143 4.217159 GGGCGACGGCGAAGGTAT 62.217 66.667 18.90 0.00 41.24 2.73
143 144 2.960129 GGCGACGGCGAAGGTATG 60.960 66.667 18.90 0.00 41.24 2.39
144 145 2.960129 GCGACGGCGAAGGTATGG 60.960 66.667 18.90 0.00 40.82 2.74
145 146 2.802792 CGACGGCGAAGGTATGGA 59.197 61.111 16.62 0.00 40.82 3.41
146 147 1.362717 CGACGGCGAAGGTATGGAT 59.637 57.895 16.62 0.00 40.82 3.41
147 148 0.939577 CGACGGCGAAGGTATGGATG 60.940 60.000 16.62 0.00 40.82 3.51
148 149 1.222115 GACGGCGAAGGTATGGATGC 61.222 60.000 16.62 0.00 0.00 3.91
149 150 2.310233 CGGCGAAGGTATGGATGCG 61.310 63.158 0.00 0.00 0.00 4.73
150 151 1.069090 GGCGAAGGTATGGATGCGA 59.931 57.895 0.00 0.00 0.00 5.10
151 152 0.946221 GGCGAAGGTATGGATGCGAG 60.946 60.000 0.00 0.00 0.00 5.03
152 153 0.946221 GCGAAGGTATGGATGCGAGG 60.946 60.000 0.00 0.00 0.00 4.63
153 154 0.319900 CGAAGGTATGGATGCGAGGG 60.320 60.000 0.00 0.00 0.00 4.30
154 155 0.603975 GAAGGTATGGATGCGAGGGC 60.604 60.000 0.00 0.00 40.52 5.19
155 156 2.357517 GGTATGGATGCGAGGGCG 60.358 66.667 0.00 0.00 44.10 6.13
156 157 2.734591 GTATGGATGCGAGGGCGA 59.265 61.111 0.00 0.00 44.10 5.54
157 158 1.373497 GTATGGATGCGAGGGCGAG 60.373 63.158 0.00 0.00 44.10 5.03
158 159 2.574018 TATGGATGCGAGGGCGAGG 61.574 63.158 0.00 0.00 44.10 4.63
175 176 2.358737 GGCAACGGTGACCTGGAG 60.359 66.667 3.55 0.00 0.00 3.86
176 177 2.358737 GCAACGGTGACCTGGAGG 60.359 66.667 3.55 0.00 42.17 4.30
177 178 2.358737 CAACGGTGACCTGGAGGC 60.359 66.667 0.00 0.00 39.32 4.70
178 179 4.003788 AACGGTGACCTGGAGGCG 62.004 66.667 0.00 0.00 39.32 5.52
194 195 4.856607 CGGCGGCTCCTCTCGTTC 62.857 72.222 7.61 0.00 0.00 3.95
195 196 4.516195 GGCGGCTCCTCTCGTTCC 62.516 72.222 0.00 0.00 0.00 3.62
196 197 4.516195 GCGGCTCCTCTCGTTCCC 62.516 72.222 0.00 0.00 0.00 3.97
197 198 3.839432 CGGCTCCTCTCGTTCCCC 61.839 72.222 0.00 0.00 0.00 4.81
198 199 3.839432 GGCTCCTCTCGTTCCCCG 61.839 72.222 0.00 0.00 38.13 5.73
199 200 3.839432 GCTCCTCTCGTTCCCCGG 61.839 72.222 0.00 0.00 37.11 5.73
200 201 3.839432 CTCCTCTCGTTCCCCGGC 61.839 72.222 0.00 0.00 37.11 6.13
236 237 4.344865 GGCTGGGGCGTCCTTTGA 62.345 66.667 5.77 0.00 39.81 2.69
237 238 2.747855 GCTGGGGCGTCCTTTGAG 60.748 66.667 5.77 0.00 36.20 3.02
238 239 3.068881 CTGGGGCGTCCTTTGAGA 58.931 61.111 5.77 0.00 36.20 3.27
239 240 1.078848 CTGGGGCGTCCTTTGAGAG 60.079 63.158 5.77 0.00 36.20 3.20
240 241 1.535444 TGGGGCGTCCTTTGAGAGA 60.535 57.895 5.77 0.00 36.20 3.10
241 242 0.909610 TGGGGCGTCCTTTGAGAGAT 60.910 55.000 5.77 0.00 36.20 2.75
242 243 0.462759 GGGGCGTCCTTTGAGAGATG 60.463 60.000 5.77 0.00 0.00 2.90
243 244 0.537188 GGGCGTCCTTTGAGAGATGA 59.463 55.000 0.00 0.00 0.00 2.92
244 245 1.066143 GGGCGTCCTTTGAGAGATGAA 60.066 52.381 0.00 0.00 0.00 2.57
245 246 2.275318 GGCGTCCTTTGAGAGATGAAG 58.725 52.381 0.00 0.00 0.00 3.02
246 247 1.663135 GCGTCCTTTGAGAGATGAAGC 59.337 52.381 0.00 0.00 0.00 3.86
247 248 2.932622 GCGTCCTTTGAGAGATGAAGCA 60.933 50.000 0.00 0.00 31.99 3.91
248 249 2.928757 CGTCCTTTGAGAGATGAAGCAG 59.071 50.000 0.00 0.00 0.00 4.24
249 250 3.367806 CGTCCTTTGAGAGATGAAGCAGA 60.368 47.826 0.00 0.00 0.00 4.26
250 251 4.680172 CGTCCTTTGAGAGATGAAGCAGAT 60.680 45.833 0.00 0.00 0.00 2.90
251 252 4.810491 GTCCTTTGAGAGATGAAGCAGATC 59.190 45.833 0.00 0.00 0.00 2.75
252 253 3.803231 CCTTTGAGAGATGAAGCAGATCG 59.197 47.826 0.00 0.00 0.00 3.69
253 254 4.441217 CCTTTGAGAGATGAAGCAGATCGA 60.441 45.833 0.00 0.00 0.00 3.59
254 255 3.986442 TGAGAGATGAAGCAGATCGAG 57.014 47.619 0.00 0.00 0.00 4.04
255 256 3.549794 TGAGAGATGAAGCAGATCGAGA 58.450 45.455 0.00 0.00 0.00 4.04
256 257 4.143543 TGAGAGATGAAGCAGATCGAGAT 58.856 43.478 0.00 0.00 0.00 2.75
257 258 4.216042 TGAGAGATGAAGCAGATCGAGATC 59.784 45.833 5.00 5.00 38.09 2.75
267 268 3.159213 AGATCGAGATCTGATGAGCCT 57.841 47.619 14.18 0.00 45.77 4.58
268 269 2.821378 AGATCGAGATCTGATGAGCCTG 59.179 50.000 14.18 0.00 45.77 4.85
269 270 1.326328 TCGAGATCTGATGAGCCTGG 58.674 55.000 0.00 0.00 0.00 4.45
270 271 1.039068 CGAGATCTGATGAGCCTGGT 58.961 55.000 0.00 0.00 0.00 4.00
271 272 1.411977 CGAGATCTGATGAGCCTGGTT 59.588 52.381 0.00 0.00 0.00 3.67
272 273 2.802415 CGAGATCTGATGAGCCTGGTTG 60.802 54.545 0.00 0.00 0.00 3.77
273 274 2.433604 GAGATCTGATGAGCCTGGTTGA 59.566 50.000 0.00 0.00 0.00 3.18
274 275 2.170187 AGATCTGATGAGCCTGGTTGAC 59.830 50.000 0.00 0.00 0.00 3.18
275 276 1.649321 TCTGATGAGCCTGGTTGACT 58.351 50.000 0.00 0.00 0.00 3.41
276 277 1.277273 TCTGATGAGCCTGGTTGACTG 59.723 52.381 0.00 0.00 0.00 3.51
277 278 1.002888 CTGATGAGCCTGGTTGACTGT 59.997 52.381 0.00 0.00 0.00 3.55
278 279 1.421268 TGATGAGCCTGGTTGACTGTT 59.579 47.619 0.00 0.00 0.00 3.16
279 280 2.158623 TGATGAGCCTGGTTGACTGTTT 60.159 45.455 0.00 0.00 0.00 2.83
280 281 2.435372 TGAGCCTGGTTGACTGTTTT 57.565 45.000 0.00 0.00 0.00 2.43
281 282 2.297701 TGAGCCTGGTTGACTGTTTTC 58.702 47.619 0.00 0.00 0.00 2.29
282 283 2.092429 TGAGCCTGGTTGACTGTTTTCT 60.092 45.455 0.00 0.00 0.00 2.52
283 284 2.952310 GAGCCTGGTTGACTGTTTTCTT 59.048 45.455 0.00 0.00 0.00 2.52
284 285 4.134563 GAGCCTGGTTGACTGTTTTCTTA 58.865 43.478 0.00 0.00 0.00 2.10
285 286 3.883489 AGCCTGGTTGACTGTTTTCTTAC 59.117 43.478 0.00 0.00 0.00 2.34
286 287 3.303791 GCCTGGTTGACTGTTTTCTTACG 60.304 47.826 0.00 0.00 0.00 3.18
287 288 3.875134 CCTGGTTGACTGTTTTCTTACGT 59.125 43.478 0.00 0.00 0.00 3.57
288 289 4.260620 CCTGGTTGACTGTTTTCTTACGTG 60.261 45.833 0.00 0.00 0.00 4.49
289 290 3.064271 TGGTTGACTGTTTTCTTACGTGC 59.936 43.478 0.00 0.00 0.00 5.34
290 291 3.277481 GTTGACTGTTTTCTTACGTGCG 58.723 45.455 0.00 0.00 0.00 5.34
291 292 1.862201 TGACTGTTTTCTTACGTGCGG 59.138 47.619 0.00 0.00 0.00 5.69
292 293 0.584876 ACTGTTTTCTTACGTGCGGC 59.415 50.000 0.00 0.00 0.00 6.53
293 294 0.110373 CTGTTTTCTTACGTGCGGCC 60.110 55.000 0.00 0.00 0.00 6.13
294 295 0.533308 TGTTTTCTTACGTGCGGCCT 60.533 50.000 0.00 0.00 0.00 5.19
295 296 0.110373 GTTTTCTTACGTGCGGCCTG 60.110 55.000 0.00 0.00 0.00 4.85
296 297 0.249953 TTTTCTTACGTGCGGCCTGA 60.250 50.000 0.00 0.00 0.00 3.86
297 298 0.669318 TTTCTTACGTGCGGCCTGAG 60.669 55.000 0.00 0.00 0.00 3.35
298 299 1.529152 TTCTTACGTGCGGCCTGAGA 61.529 55.000 0.00 0.00 0.00 3.27
299 300 1.141881 CTTACGTGCGGCCTGAGAT 59.858 57.895 0.00 0.00 0.00 2.75
300 301 0.384309 CTTACGTGCGGCCTGAGATA 59.616 55.000 0.00 0.00 0.00 1.98
301 302 0.101759 TTACGTGCGGCCTGAGATAC 59.898 55.000 0.00 0.00 0.00 2.24
302 303 2.055310 TACGTGCGGCCTGAGATACG 62.055 60.000 0.00 5.02 37.54 3.06
303 304 2.805546 GTGCGGCCTGAGATACGA 59.194 61.111 0.00 0.00 0.00 3.43
304 305 1.141019 GTGCGGCCTGAGATACGAA 59.859 57.895 0.00 0.00 0.00 3.85
305 306 0.459585 GTGCGGCCTGAGATACGAAA 60.460 55.000 0.00 0.00 0.00 3.46
306 307 0.179111 TGCGGCCTGAGATACGAAAG 60.179 55.000 0.00 0.00 0.00 2.62
307 308 0.102481 GCGGCCTGAGATACGAAAGA 59.898 55.000 0.00 0.00 0.00 2.52
308 309 1.470979 GCGGCCTGAGATACGAAAGAA 60.471 52.381 0.00 0.00 0.00 2.52
309 310 2.888594 CGGCCTGAGATACGAAAGAAA 58.111 47.619 0.00 0.00 0.00 2.52
310 311 3.259064 CGGCCTGAGATACGAAAGAAAA 58.741 45.455 0.00 0.00 0.00 2.29
311 312 3.062234 CGGCCTGAGATACGAAAGAAAAC 59.938 47.826 0.00 0.00 0.00 2.43
312 313 3.374367 GGCCTGAGATACGAAAGAAAACC 59.626 47.826 0.00 0.00 0.00 3.27
313 314 4.000988 GCCTGAGATACGAAAGAAAACCA 58.999 43.478 0.00 0.00 0.00 3.67
314 315 4.636206 GCCTGAGATACGAAAGAAAACCAT 59.364 41.667 0.00 0.00 0.00 3.55
315 316 5.815740 GCCTGAGATACGAAAGAAAACCATA 59.184 40.000 0.00 0.00 0.00 2.74
316 317 6.238130 GCCTGAGATACGAAAGAAAACCATAC 60.238 42.308 0.00 0.00 0.00 2.39
317 318 6.816640 CCTGAGATACGAAAGAAAACCATACA 59.183 38.462 0.00 0.00 0.00 2.29
318 319 7.010552 CCTGAGATACGAAAGAAAACCATACAG 59.989 40.741 0.00 0.00 0.00 2.74
319 320 7.608153 TGAGATACGAAAGAAAACCATACAGA 58.392 34.615 0.00 0.00 0.00 3.41
320 321 8.092068 TGAGATACGAAAGAAAACCATACAGAA 58.908 33.333 0.00 0.00 0.00 3.02
321 322 8.842358 AGATACGAAAGAAAACCATACAGAAA 57.158 30.769 0.00 0.00 0.00 2.52
322 323 9.280174 AGATACGAAAGAAAACCATACAGAAAA 57.720 29.630 0.00 0.00 0.00 2.29
323 324 9.326339 GATACGAAAGAAAACCATACAGAAAAC 57.674 33.333 0.00 0.00 0.00 2.43
324 325 6.196571 ACGAAAGAAAACCATACAGAAAACG 58.803 36.000 0.00 0.00 0.00 3.60
325 326 6.037391 ACGAAAGAAAACCATACAGAAAACGA 59.963 34.615 0.00 0.00 0.00 3.85
326 327 6.356190 CGAAAGAAAACCATACAGAAAACGAC 59.644 38.462 0.00 0.00 0.00 4.34
327 328 5.338614 AGAAAACCATACAGAAAACGACG 57.661 39.130 0.00 0.00 0.00 5.12
328 329 5.051816 AGAAAACCATACAGAAAACGACGA 58.948 37.500 0.00 0.00 0.00 4.20
329 330 5.524646 AGAAAACCATACAGAAAACGACGAA 59.475 36.000 0.00 0.00 0.00 3.85
330 331 5.738118 AAACCATACAGAAAACGACGAAA 57.262 34.783 0.00 0.00 0.00 3.46
331 332 5.738118 AACCATACAGAAAACGACGAAAA 57.262 34.783 0.00 0.00 0.00 2.29
332 333 5.738118 ACCATACAGAAAACGACGAAAAA 57.262 34.783 0.00 0.00 0.00 1.94
376 377 2.971660 AAAAACCCGGACAAAAGTGG 57.028 45.000 0.73 0.00 0.00 4.00
377 378 1.855295 AAAACCCGGACAAAAGTGGT 58.145 45.000 0.73 0.00 0.00 4.16
378 379 1.107945 AAACCCGGACAAAAGTGGTG 58.892 50.000 0.73 0.00 0.00 4.17
379 380 0.753848 AACCCGGACAAAAGTGGTGG 60.754 55.000 0.73 0.00 0.00 4.61
380 381 1.901464 CCCGGACAAAAGTGGTGGG 60.901 63.158 0.73 0.00 0.00 4.61
381 382 1.149627 CCGGACAAAAGTGGTGGGA 59.850 57.895 0.00 0.00 0.00 4.37
382 383 1.170290 CCGGACAAAAGTGGTGGGAC 61.170 60.000 0.00 0.00 0.00 4.46
383 384 0.464735 CGGACAAAAGTGGTGGGACA 60.465 55.000 0.00 0.00 0.00 4.02
384 385 1.770294 GGACAAAAGTGGTGGGACAA 58.230 50.000 0.00 0.00 44.16 3.18
385 386 2.104170 GGACAAAAGTGGTGGGACAAA 58.896 47.619 0.00 0.00 44.16 2.83
386 387 2.498078 GGACAAAAGTGGTGGGACAAAA 59.502 45.455 0.00 0.00 44.16 2.44
387 388 3.133901 GGACAAAAGTGGTGGGACAAAAT 59.866 43.478 0.00 0.00 44.16 1.82
388 389 4.383661 GGACAAAAGTGGTGGGACAAAATT 60.384 41.667 0.00 0.00 44.16 1.82
389 390 5.163395 GGACAAAAGTGGTGGGACAAAATTA 60.163 40.000 0.00 0.00 44.16 1.40
390 391 6.301169 ACAAAAGTGGTGGGACAAAATTAA 57.699 33.333 0.00 0.00 44.16 1.40
391 392 6.110033 ACAAAAGTGGTGGGACAAAATTAAC 58.890 36.000 0.00 0.00 44.16 2.01
392 393 4.948341 AAGTGGTGGGACAAAATTAACC 57.052 40.909 0.00 0.00 44.16 2.85
393 394 2.888414 AGTGGTGGGACAAAATTAACCG 59.112 45.455 0.00 0.00 44.16 4.44
394 395 2.029739 GTGGTGGGACAAAATTAACCGG 60.030 50.000 0.00 0.00 44.16 5.28
395 396 1.067425 GGTGGGACAAAATTAACCGGC 60.067 52.381 0.00 0.00 44.16 6.13
396 397 0.882474 TGGGACAAAATTAACCGGCG 59.118 50.000 0.00 0.00 31.92 6.46
397 398 0.171679 GGGACAAAATTAACCGGCGG 59.828 55.000 27.06 27.06 0.00 6.13
398 399 1.166989 GGACAAAATTAACCGGCGGA 58.833 50.000 35.78 11.41 0.00 5.54
399 400 1.131693 GGACAAAATTAACCGGCGGAG 59.868 52.381 35.78 7.40 0.00 4.63
400 401 2.078392 GACAAAATTAACCGGCGGAGA 58.922 47.619 35.78 17.20 0.00 3.71
401 402 1.808343 ACAAAATTAACCGGCGGAGAC 59.192 47.619 35.78 0.00 0.00 3.36
402 403 2.081462 CAAAATTAACCGGCGGAGACT 58.919 47.619 35.78 15.91 0.00 3.24
403 404 3.264104 CAAAATTAACCGGCGGAGACTA 58.736 45.455 35.78 14.83 0.00 2.59
404 405 2.591571 AATTAACCGGCGGAGACTAC 57.408 50.000 35.78 0.00 0.00 2.73
405 406 0.749049 ATTAACCGGCGGAGACTACC 59.251 55.000 35.78 0.00 0.00 3.18
406 407 0.611618 TTAACCGGCGGAGACTACCA 60.612 55.000 35.78 4.01 0.00 3.25
407 408 0.611618 TAACCGGCGGAGACTACCAA 60.612 55.000 35.78 3.38 0.00 3.67
408 409 2.163601 AACCGGCGGAGACTACCAAC 62.164 60.000 35.78 0.00 0.00 3.77
409 410 2.348888 CCGGCGGAGACTACCAACT 61.349 63.158 24.41 0.00 0.00 3.16
410 411 1.153823 CGGCGGAGACTACCAACTG 60.154 63.158 0.00 0.00 0.00 3.16
411 412 1.448013 GGCGGAGACTACCAACTGC 60.448 63.158 0.00 0.00 0.00 4.40
412 413 1.592223 GCGGAGACTACCAACTGCT 59.408 57.895 0.00 0.00 0.00 4.24
413 414 0.037232 GCGGAGACTACCAACTGCTT 60.037 55.000 0.00 0.00 0.00 3.91
414 415 1.997669 CGGAGACTACCAACTGCTTC 58.002 55.000 0.00 0.00 0.00 3.86
415 416 1.272490 CGGAGACTACCAACTGCTTCA 59.728 52.381 0.00 0.00 0.00 3.02
416 417 2.093973 CGGAGACTACCAACTGCTTCAT 60.094 50.000 0.00 0.00 0.00 2.57
417 418 3.617531 CGGAGACTACCAACTGCTTCATT 60.618 47.826 0.00 0.00 0.00 2.57
418 419 4.381612 CGGAGACTACCAACTGCTTCATTA 60.382 45.833 0.00 0.00 0.00 1.90
419 420 5.112686 GGAGACTACCAACTGCTTCATTAG 58.887 45.833 0.00 0.00 0.00 1.73
420 421 5.105310 GGAGACTACCAACTGCTTCATTAGA 60.105 44.000 0.00 0.00 0.00 2.10
421 422 6.360370 AGACTACCAACTGCTTCATTAGAA 57.640 37.500 0.00 0.00 0.00 2.10
438 439 9.587772 TTCATTAGAAGTAGAGATGTAGTTTGC 57.412 33.333 0.00 0.00 0.00 3.68
439 440 8.198109 TCATTAGAAGTAGAGATGTAGTTTGCC 58.802 37.037 0.00 0.00 0.00 4.52
462 463 1.303309 GGTGGATCTGATCGCTTTGG 58.697 55.000 11.28 0.00 0.00 3.28
463 464 1.407437 GGTGGATCTGATCGCTTTGGT 60.407 52.381 11.28 0.00 0.00 3.67
563 564 8.800370 TGTGCATTTTATTTATACAGAGACCA 57.200 30.769 0.00 0.00 0.00 4.02
564 565 8.892723 TGTGCATTTTATTTATACAGAGACCAG 58.107 33.333 0.00 0.00 0.00 4.00
739 742 8.402472 CAAAATGCCGGTCAAATTAGAATAGTA 58.598 33.333 1.90 0.00 0.00 1.82
740 743 7.492352 AATGCCGGTCAAATTAGAATAGTAC 57.508 36.000 1.90 0.00 0.00 2.73
741 744 6.229936 TGCCGGTCAAATTAGAATAGTACT 57.770 37.500 1.90 0.00 0.00 2.73
797 800 4.116878 GGCTCAGCCGTTCATCTC 57.883 61.111 0.00 0.00 39.62 2.75
804 807 2.278857 CCGTTCATCTCGGCTCCG 60.279 66.667 1.14 1.14 41.48 4.63
805 808 2.278857 CGTTCATCTCGGCTCCGG 60.279 66.667 8.59 0.00 40.25 5.14
806 809 2.893398 GTTCATCTCGGCTCCGGT 59.107 61.111 8.59 0.00 40.25 5.28
807 810 1.519455 GTTCATCTCGGCTCCGGTG 60.519 63.158 8.59 0.00 40.25 4.94
1135 1150 0.163788 CGCATTCGAGGTTGTGACAC 59.836 55.000 0.00 0.00 38.10 3.67
1137 1152 1.461127 GCATTCGAGGTTGTGACACTC 59.539 52.381 7.20 0.21 0.00 3.51
1194 1209 1.770294 TTTCCTTTGTCGTTTGCCCT 58.230 45.000 0.00 0.00 0.00 5.19
1214 1230 3.021695 CTCACGATCCAACACCTAGGTA 58.978 50.000 15.80 0.00 0.00 3.08
1382 1573 3.668447 ACGAAGAAATGCTGTCATGACT 58.332 40.909 25.55 5.03 32.23 3.41
1383 1574 3.681897 ACGAAGAAATGCTGTCATGACTC 59.318 43.478 25.55 17.29 32.23 3.36
1384 1575 3.681417 CGAAGAAATGCTGTCATGACTCA 59.319 43.478 25.55 21.73 32.23 3.41
1385 1576 4.331992 CGAAGAAATGCTGTCATGACTCAT 59.668 41.667 25.55 22.79 32.23 2.90
1386 1577 5.562506 AAGAAATGCTGTCATGACTCATG 57.437 39.130 25.55 12.25 42.60 3.07
1387 1578 4.840271 AGAAATGCTGTCATGACTCATGA 58.160 39.130 25.55 16.44 46.84 3.07
1409 1600 6.969366 TGACAGTGAAAATGTTAATGACTGG 58.031 36.000 0.00 0.00 46.63 4.00
1456 1650 3.150767 CGAGTTGAAATGGGGGTTTGTA 58.849 45.455 0.00 0.00 0.00 2.41
1457 1651 3.570550 CGAGTTGAAATGGGGGTTTGTAA 59.429 43.478 0.00 0.00 0.00 2.41
1458 1652 4.219725 CGAGTTGAAATGGGGGTTTGTAAT 59.780 41.667 0.00 0.00 0.00 1.89
1459 1653 5.279256 CGAGTTGAAATGGGGGTTTGTAATT 60.279 40.000 0.00 0.00 0.00 1.40
1543 1737 4.760204 ACAAACCTGAACACTATTACCTGC 59.240 41.667 0.00 0.00 0.00 4.85
1567 1765 4.036518 AGTTGGCATCTTCCTCTATGAGT 58.963 43.478 0.00 0.00 0.00 3.41
1626 1824 5.642686 AGTAGACGAAACTCATGAGCTAAC 58.357 41.667 22.83 10.55 0.00 2.34
1658 1856 7.119709 TGTATTTTGTGTATAGAGGCTAGCA 57.880 36.000 18.24 0.00 0.00 3.49
1820 2018 0.889186 ACAACGAGCCATGGTTCACC 60.889 55.000 26.00 3.79 0.00 4.02
1856 2054 1.679898 GGTTGGACCAGGAGACCAG 59.320 63.158 8.02 0.00 38.42 4.00
2006 2204 5.059404 ACATGTATGCTGCTGGTTTTTAC 57.941 39.130 0.00 0.00 0.00 2.01
2090 2288 6.661304 ATGACTCATCACATAGCATCTGTA 57.339 37.500 0.00 0.00 37.79 2.74
2108 2306 8.615211 GCATCTGTATTTCTCATTGTAATGTCA 58.385 33.333 4.67 0.00 37.65 3.58
2260 2458 6.005823 TGTCATGATTCAAGTGGTGAGAATT 58.994 36.000 0.00 0.00 37.61 2.17
2299 2497 5.276678 GCAATAGCAAATGAATGTGCATGTC 60.277 40.000 8.14 0.00 43.42 3.06
2324 2522 2.008242 TTGGCTATTTGGGCAGTTGT 57.992 45.000 0.00 0.00 42.50 3.32
2414 2798 3.005554 AGATGACAAAATGCAGACTCCG 58.994 45.455 0.00 0.00 0.00 4.63
2521 2906 4.626042 TCCATATTTGCGTTGCTTTTTGT 58.374 34.783 0.00 0.00 0.00 2.83
2558 2943 6.406370 TGCATGTACTAGCTTTCTGTTACAT 58.594 36.000 10.62 0.00 34.53 2.29
2572 2957 7.496346 TTCTGTTACATTTCCTCCATACTCT 57.504 36.000 0.00 0.00 0.00 3.24
2692 3078 6.761714 GCCTGCTACTAGCTTTCTTTTACATA 59.238 38.462 9.49 0.00 42.97 2.29
2696 3082 7.980099 TGCTACTAGCTTTCTTTTACATACCTC 59.020 37.037 9.49 0.00 42.97 3.85
2697 3083 7.438757 GCTACTAGCTTTCTTTTACATACCTCC 59.561 40.741 0.00 0.00 38.45 4.30
2698 3084 7.253905 ACTAGCTTTCTTTTACATACCTCCA 57.746 36.000 0.00 0.00 0.00 3.86
2699 3085 7.862675 ACTAGCTTTCTTTTACATACCTCCAT 58.137 34.615 0.00 0.00 0.00 3.41
2700 3086 8.989131 ACTAGCTTTCTTTTACATACCTCCATA 58.011 33.333 0.00 0.00 0.00 2.74
2701 3087 9.832445 CTAGCTTTCTTTTACATACCTCCATAA 57.168 33.333 0.00 0.00 0.00 1.90
2703 3089 9.343539 AGCTTTCTTTTACATACCTCCATAATC 57.656 33.333 0.00 0.00 0.00 1.75
2704 3090 9.343539 GCTTTCTTTTACATACCTCCATAATCT 57.656 33.333 0.00 0.00 0.00 2.40
2707 3093 9.627123 TTCTTTTACATACCTCCATAATCTTGG 57.373 33.333 0.00 0.00 38.18 3.61
2708 3094 8.217799 TCTTTTACATACCTCCATAATCTTGGG 58.782 37.037 0.00 0.00 37.37 4.12
2768 3154 5.067674 TGAGAAAAGTGTGGATTTGGAACAG 59.932 40.000 0.00 0.00 42.39 3.16
3004 3392 3.322828 ACATCAAGCATTTGTCTGCCTTT 59.677 39.130 0.00 0.00 43.33 3.11
3033 3423 5.924475 TGCTTCTTTGTTACTAGCAGTTC 57.076 39.130 0.00 0.00 36.96 3.01
3081 3471 2.159114 ACGCCTGCACATGTTTTTCTTT 60.159 40.909 0.00 0.00 0.00 2.52
3773 4164 4.332828 GATTCGGAATCTGACGAGGAACG 61.333 52.174 20.70 0.00 40.51 3.95
3888 4279 8.025243 TCTGTTTCTGTATTAACCGTTTCATC 57.975 34.615 0.00 0.00 0.00 2.92
4000 4391 2.616960 AGATGTCACGCGAGCATTTTA 58.383 42.857 15.93 0.00 0.00 1.52
4101 4492 0.992695 GCCTCTACCCCCTTCAAACT 59.007 55.000 0.00 0.00 0.00 2.66
4148 4539 4.541779 TCAAATTGGTCAACATACAACGC 58.458 39.130 0.00 0.00 0.00 4.84
4154 4545 3.319405 TGGTCAACATACAACGCCAATTT 59.681 39.130 0.00 0.00 0.00 1.82
4155 4546 3.672867 GGTCAACATACAACGCCAATTTG 59.327 43.478 0.00 0.00 0.00 2.32
4174 4565 3.980646 TGTTTTTGCTCAACATAGCGT 57.019 38.095 0.00 0.00 45.85 5.07
4366 4757 6.400303 CGAAACTGATGTCGTAAACCGTTATT 60.400 38.462 0.00 0.00 37.94 1.40
4453 4844 6.470877 GCGTAACCATGGTTTATTGTTATGTG 59.529 38.462 34.04 10.27 36.76 3.21
4571 4964 9.899661 TTAATAACTACTATGCTCCATGTTGTT 57.100 29.630 0.00 0.00 32.03 2.83
4674 5067 6.757010 ACTCTTGATAATCGCGTGAAATACTT 59.243 34.615 5.77 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.710724 CTAGGGTTCCATACGCCGCC 62.711 65.000 0.00 0.00 40.39 6.13
13 14 1.300697 CTAGGGTTCCATACGCCGC 60.301 63.158 0.00 0.00 40.39 6.53
14 15 1.300697 GCTAGGGTTCCATACGCCG 60.301 63.158 0.00 0.00 40.39 6.46
15 16 0.033642 GAGCTAGGGTTCCATACGCC 59.966 60.000 0.00 0.00 40.39 5.68
16 17 0.318784 CGAGCTAGGGTTCCATACGC 60.319 60.000 0.00 0.00 39.85 4.42
17 18 1.001597 GACGAGCTAGGGTTCCATACG 60.002 57.143 0.00 0.00 0.00 3.06
18 19 2.293955 GAGACGAGCTAGGGTTCCATAC 59.706 54.545 0.00 0.00 0.00 2.39
19 20 2.584236 GAGACGAGCTAGGGTTCCATA 58.416 52.381 0.00 0.00 0.00 2.74
20 21 1.404843 GAGACGAGCTAGGGTTCCAT 58.595 55.000 0.00 0.00 0.00 3.41
21 22 1.030488 CGAGACGAGCTAGGGTTCCA 61.030 60.000 0.00 0.00 0.00 3.53
22 23 1.031029 ACGAGACGAGCTAGGGTTCC 61.031 60.000 0.00 0.00 0.00 3.62
23 24 0.810016 AACGAGACGAGCTAGGGTTC 59.190 55.000 0.00 0.00 0.00 3.62
24 25 0.810016 GAACGAGACGAGCTAGGGTT 59.190 55.000 0.00 0.00 0.00 4.11
25 26 1.031029 GGAACGAGACGAGCTAGGGT 61.031 60.000 0.00 0.00 0.00 4.34
26 27 0.748729 AGGAACGAGACGAGCTAGGG 60.749 60.000 0.00 0.00 0.00 3.53
27 28 0.658897 GAGGAACGAGACGAGCTAGG 59.341 60.000 0.00 0.00 0.00 3.02
28 29 0.302288 CGAGGAACGAGACGAGCTAG 59.698 60.000 0.00 0.00 45.77 3.42
29 30 1.088340 CCGAGGAACGAGACGAGCTA 61.088 60.000 0.00 0.00 45.77 3.32
30 31 2.400158 CCGAGGAACGAGACGAGCT 61.400 63.158 0.00 0.00 45.77 4.09
31 32 2.100603 CCGAGGAACGAGACGAGC 59.899 66.667 0.00 0.00 45.77 5.03
32 33 2.100603 GCCGAGGAACGAGACGAG 59.899 66.667 0.00 0.00 45.77 4.18
33 34 3.796443 CGCCGAGGAACGAGACGA 61.796 66.667 0.00 0.00 45.77 4.20
51 52 3.966026 GAACGAGACGAGCCACCGG 62.966 68.421 0.00 0.00 0.00 5.28
52 53 2.504244 GAACGAGACGAGCCACCG 60.504 66.667 0.00 0.00 0.00 4.94
53 54 2.126031 GGAACGAGACGAGCCACC 60.126 66.667 0.00 0.00 0.00 4.61
54 55 1.153997 GAGGAACGAGACGAGCCAC 60.154 63.158 0.00 0.00 0.00 5.01
55 56 2.687805 CGAGGAACGAGACGAGCCA 61.688 63.158 0.00 0.00 45.77 4.75
56 57 2.100603 CGAGGAACGAGACGAGCC 59.899 66.667 0.00 0.00 45.77 4.70
57 58 2.577378 GCGAGGAACGAGACGAGC 60.577 66.667 0.00 0.00 45.77 5.03
58 59 2.276743 CGCGAGGAACGAGACGAG 60.277 66.667 0.00 0.00 44.01 4.18
78 79 0.248134 CCGATCCGAGACAAGTCGTC 60.248 60.000 0.00 0.00 45.77 4.20
79 80 1.801332 CCGATCCGAGACAAGTCGT 59.199 57.895 0.00 0.00 38.32 4.34
80 81 1.586564 GCCGATCCGAGACAAGTCG 60.587 63.158 0.00 0.00 39.77 4.18
81 82 1.586564 CGCCGATCCGAGACAAGTC 60.587 63.158 0.00 0.00 0.00 3.01
82 83 2.490217 CGCCGATCCGAGACAAGT 59.510 61.111 0.00 0.00 0.00 3.16
83 84 2.278857 CCGCCGATCCGAGACAAG 60.279 66.667 0.00 0.00 0.00 3.16
84 85 4.508128 GCCGCCGATCCGAGACAA 62.508 66.667 0.00 0.00 0.00 3.18
86 87 3.792053 AATGCCGCCGATCCGAGAC 62.792 63.158 0.00 0.00 0.00 3.36
87 88 2.971428 GAAATGCCGCCGATCCGAGA 62.971 60.000 0.00 0.00 0.00 4.04
88 89 2.588877 AAATGCCGCCGATCCGAG 60.589 61.111 0.00 0.00 0.00 4.63
89 90 2.587753 GAAATGCCGCCGATCCGA 60.588 61.111 0.00 0.00 0.00 4.55
90 91 2.885676 CTGAAATGCCGCCGATCCG 61.886 63.158 0.00 0.00 0.00 4.18
91 92 2.546494 CCTGAAATGCCGCCGATCC 61.546 63.158 0.00 0.00 0.00 3.36
92 93 2.546494 CCCTGAAATGCCGCCGATC 61.546 63.158 0.00 0.00 0.00 3.69
93 94 2.343475 ATCCCTGAAATGCCGCCGAT 62.343 55.000 0.00 0.00 0.00 4.18
94 95 2.940890 GATCCCTGAAATGCCGCCGA 62.941 60.000 0.00 0.00 0.00 5.54
95 96 2.516930 ATCCCTGAAATGCCGCCG 60.517 61.111 0.00 0.00 0.00 6.46
96 97 2.196245 GGATCCCTGAAATGCCGCC 61.196 63.158 0.00 0.00 0.00 6.13
97 98 2.546494 CGGATCCCTGAAATGCCGC 61.546 63.158 6.06 0.00 31.80 6.53
98 99 2.546494 GCGGATCCCTGAAATGCCG 61.546 63.158 6.06 0.00 41.51 5.69
99 100 2.546494 CGCGGATCCCTGAAATGCC 61.546 63.158 6.06 0.00 0.00 4.40
100 101 1.502163 CTCGCGGATCCCTGAAATGC 61.502 60.000 6.13 0.36 0.00 3.56
101 102 1.502163 GCTCGCGGATCCCTGAAATG 61.502 60.000 6.13 0.00 0.00 2.32
102 103 1.227674 GCTCGCGGATCCCTGAAAT 60.228 57.895 6.13 0.00 0.00 2.17
103 104 2.186903 GCTCGCGGATCCCTGAAA 59.813 61.111 6.13 0.00 0.00 2.69
104 105 4.207281 CGCTCGCGGATCCCTGAA 62.207 66.667 6.13 0.00 35.56 3.02
125 126 4.217159 ATACCTTCGCCGTCGCCC 62.217 66.667 0.00 0.00 35.26 6.13
126 127 2.960129 CATACCTTCGCCGTCGCC 60.960 66.667 0.00 0.00 35.26 5.54
127 128 2.694829 ATCCATACCTTCGCCGTCGC 62.695 60.000 0.00 0.00 35.26 5.19
128 129 0.939577 CATCCATACCTTCGCCGTCG 60.940 60.000 0.00 0.00 0.00 5.12
129 130 1.222115 GCATCCATACCTTCGCCGTC 61.222 60.000 0.00 0.00 0.00 4.79
130 131 1.227556 GCATCCATACCTTCGCCGT 60.228 57.895 0.00 0.00 0.00 5.68
131 132 2.310233 CGCATCCATACCTTCGCCG 61.310 63.158 0.00 0.00 0.00 6.46
132 133 0.946221 CTCGCATCCATACCTTCGCC 60.946 60.000 0.00 0.00 0.00 5.54
133 134 0.946221 CCTCGCATCCATACCTTCGC 60.946 60.000 0.00 0.00 0.00 4.70
134 135 0.319900 CCCTCGCATCCATACCTTCG 60.320 60.000 0.00 0.00 0.00 3.79
135 136 0.603975 GCCCTCGCATCCATACCTTC 60.604 60.000 0.00 0.00 34.03 3.46
136 137 1.451936 GCCCTCGCATCCATACCTT 59.548 57.895 0.00 0.00 34.03 3.50
137 138 2.872388 CGCCCTCGCATCCATACCT 61.872 63.158 0.00 0.00 34.03 3.08
138 139 2.357517 CGCCCTCGCATCCATACC 60.358 66.667 0.00 0.00 34.03 2.73
139 140 1.373497 CTCGCCCTCGCATCCATAC 60.373 63.158 0.00 0.00 35.26 2.39
140 141 2.574018 CCTCGCCCTCGCATCCATA 61.574 63.158 0.00 0.00 35.26 2.74
141 142 3.933722 CCTCGCCCTCGCATCCAT 61.934 66.667 0.00 0.00 35.26 3.41
154 155 4.003788 AGGTCACCGTTGCCCTCG 62.004 66.667 0.00 0.00 0.00 4.63
155 156 2.358737 CAGGTCACCGTTGCCCTC 60.359 66.667 0.00 0.00 0.00 4.30
156 157 3.953775 CCAGGTCACCGTTGCCCT 61.954 66.667 0.00 0.00 0.00 5.19
157 158 3.901797 CTCCAGGTCACCGTTGCCC 62.902 68.421 0.00 0.00 0.00 5.36
158 159 2.358737 CTCCAGGTCACCGTTGCC 60.359 66.667 0.00 0.00 0.00 4.52
159 160 2.358737 CCTCCAGGTCACCGTTGC 60.359 66.667 0.00 0.00 0.00 4.17
160 161 2.358737 GCCTCCAGGTCACCGTTG 60.359 66.667 0.00 0.00 37.57 4.10
161 162 4.003788 CGCCTCCAGGTCACCGTT 62.004 66.667 0.00 0.00 37.57 4.44
177 178 4.856607 GAACGAGAGGAGCCGCCG 62.857 72.222 0.00 0.00 43.43 6.46
178 179 4.516195 GGAACGAGAGGAGCCGCC 62.516 72.222 0.00 0.00 0.00 6.13
179 180 4.516195 GGGAACGAGAGGAGCCGC 62.516 72.222 0.00 0.00 0.00 6.53
180 181 3.839432 GGGGAACGAGAGGAGCCG 61.839 72.222 0.00 0.00 0.00 5.52
219 220 4.344865 TCAAAGGACGCCCCAGCC 62.345 66.667 0.00 0.00 37.41 4.85
220 221 2.747855 CTCAAAGGACGCCCCAGC 60.748 66.667 0.00 0.00 37.41 4.85
221 222 1.078848 CTCTCAAAGGACGCCCCAG 60.079 63.158 0.00 0.00 37.41 4.45
222 223 0.909610 ATCTCTCAAAGGACGCCCCA 60.910 55.000 0.00 0.00 37.41 4.96
223 224 0.462759 CATCTCTCAAAGGACGCCCC 60.463 60.000 0.00 0.00 0.00 5.80
224 225 0.537188 TCATCTCTCAAAGGACGCCC 59.463 55.000 0.00 0.00 0.00 6.13
225 226 2.275318 CTTCATCTCTCAAAGGACGCC 58.725 52.381 0.00 0.00 0.00 5.68
226 227 1.663135 GCTTCATCTCTCAAAGGACGC 59.337 52.381 0.00 0.00 0.00 5.19
227 228 2.928757 CTGCTTCATCTCTCAAAGGACG 59.071 50.000 0.00 0.00 0.00 4.79
228 229 4.199432 TCTGCTTCATCTCTCAAAGGAC 57.801 45.455 0.00 0.00 0.00 3.85
229 230 4.441217 CGATCTGCTTCATCTCTCAAAGGA 60.441 45.833 0.00 0.00 0.00 3.36
230 231 3.803231 CGATCTGCTTCATCTCTCAAAGG 59.197 47.826 0.00 0.00 0.00 3.11
231 232 4.680702 TCGATCTGCTTCATCTCTCAAAG 58.319 43.478 0.00 0.00 0.00 2.77
232 233 4.400567 TCTCGATCTGCTTCATCTCTCAAA 59.599 41.667 0.00 0.00 0.00 2.69
233 234 3.950395 TCTCGATCTGCTTCATCTCTCAA 59.050 43.478 0.00 0.00 0.00 3.02
234 235 3.549794 TCTCGATCTGCTTCATCTCTCA 58.450 45.455 0.00 0.00 0.00 3.27
235 236 4.456911 AGATCTCGATCTGCTTCATCTCTC 59.543 45.833 8.55 0.00 45.77 3.20
236 237 4.401022 AGATCTCGATCTGCTTCATCTCT 58.599 43.478 8.55 0.00 45.77 3.10
237 238 4.771590 AGATCTCGATCTGCTTCATCTC 57.228 45.455 8.55 0.00 45.77 2.75
248 249 2.094597 CCAGGCTCATCAGATCTCGATC 60.095 54.545 0.00 0.00 38.09 3.69
249 250 1.894466 CCAGGCTCATCAGATCTCGAT 59.106 52.381 0.00 0.00 0.00 3.59
250 251 1.326328 CCAGGCTCATCAGATCTCGA 58.674 55.000 0.00 0.00 0.00 4.04
251 252 1.039068 ACCAGGCTCATCAGATCTCG 58.961 55.000 0.00 0.00 0.00 4.04
252 253 2.433604 TCAACCAGGCTCATCAGATCTC 59.566 50.000 0.00 0.00 0.00 2.75
253 254 2.170187 GTCAACCAGGCTCATCAGATCT 59.830 50.000 0.00 0.00 0.00 2.75
254 255 2.170187 AGTCAACCAGGCTCATCAGATC 59.830 50.000 0.00 0.00 0.00 2.75
255 256 2.093075 CAGTCAACCAGGCTCATCAGAT 60.093 50.000 0.00 0.00 0.00 2.90
256 257 1.277273 CAGTCAACCAGGCTCATCAGA 59.723 52.381 0.00 0.00 0.00 3.27
257 258 1.002888 ACAGTCAACCAGGCTCATCAG 59.997 52.381 0.00 0.00 0.00 2.90
258 259 1.059098 ACAGTCAACCAGGCTCATCA 58.941 50.000 0.00 0.00 0.00 3.07
259 260 2.191128 AACAGTCAACCAGGCTCATC 57.809 50.000 0.00 0.00 0.00 2.92
260 261 2.664402 AAACAGTCAACCAGGCTCAT 57.336 45.000 0.00 0.00 0.00 2.90
261 262 2.092429 AGAAAACAGTCAACCAGGCTCA 60.092 45.455 0.00 0.00 0.00 4.26
262 263 2.576615 AGAAAACAGTCAACCAGGCTC 58.423 47.619 0.00 0.00 0.00 4.70
263 264 2.736670 AGAAAACAGTCAACCAGGCT 57.263 45.000 0.00 0.00 0.00 4.58
264 265 3.303791 CGTAAGAAAACAGTCAACCAGGC 60.304 47.826 0.00 0.00 43.02 4.85
265 266 3.875134 ACGTAAGAAAACAGTCAACCAGG 59.125 43.478 0.00 0.00 43.62 4.45
266 267 4.785341 GCACGTAAGAAAACAGTCAACCAG 60.785 45.833 0.00 0.00 43.62 4.00
267 268 3.064271 GCACGTAAGAAAACAGTCAACCA 59.936 43.478 0.00 0.00 43.62 3.67
268 269 3.614588 GCACGTAAGAAAACAGTCAACC 58.385 45.455 0.00 0.00 43.62 3.77
269 270 3.277481 CGCACGTAAGAAAACAGTCAAC 58.723 45.455 0.00 0.00 43.62 3.18
270 271 2.285756 CCGCACGTAAGAAAACAGTCAA 59.714 45.455 0.00 0.00 43.62 3.18
271 272 1.862201 CCGCACGTAAGAAAACAGTCA 59.138 47.619 0.00 0.00 43.62 3.41
272 273 1.398071 GCCGCACGTAAGAAAACAGTC 60.398 52.381 0.00 0.00 43.62 3.51
273 274 0.584876 GCCGCACGTAAGAAAACAGT 59.415 50.000 0.00 0.00 43.62 3.55
274 275 0.110373 GGCCGCACGTAAGAAAACAG 60.110 55.000 0.00 0.00 43.62 3.16
275 276 0.533308 AGGCCGCACGTAAGAAAACA 60.533 50.000 0.00 0.00 43.62 2.83
276 277 0.110373 CAGGCCGCACGTAAGAAAAC 60.110 55.000 0.00 0.00 43.62 2.43
277 278 0.249953 TCAGGCCGCACGTAAGAAAA 60.250 50.000 0.00 0.00 43.62 2.29
278 279 0.669318 CTCAGGCCGCACGTAAGAAA 60.669 55.000 0.00 0.00 43.62 2.52
279 280 1.080093 CTCAGGCCGCACGTAAGAA 60.080 57.895 0.00 0.00 43.62 2.52
280 281 1.320344 ATCTCAGGCCGCACGTAAGA 61.320 55.000 0.00 0.00 43.62 2.10
282 283 0.101759 GTATCTCAGGCCGCACGTAA 59.898 55.000 0.00 0.00 0.00 3.18
283 284 1.731700 GTATCTCAGGCCGCACGTA 59.268 57.895 0.00 0.00 0.00 3.57
284 285 2.494918 GTATCTCAGGCCGCACGT 59.505 61.111 0.00 0.00 0.00 4.49
285 286 2.607668 TTCGTATCTCAGGCCGCACG 62.608 60.000 0.00 2.21 0.00 5.34
286 287 0.459585 TTTCGTATCTCAGGCCGCAC 60.460 55.000 0.00 0.00 0.00 5.34
287 288 0.179111 CTTTCGTATCTCAGGCCGCA 60.179 55.000 0.00 0.00 0.00 5.69
288 289 0.102481 TCTTTCGTATCTCAGGCCGC 59.898 55.000 0.00 0.00 0.00 6.53
289 290 2.579207 TTCTTTCGTATCTCAGGCCG 57.421 50.000 0.00 0.00 0.00 6.13
290 291 3.374367 GGTTTTCTTTCGTATCTCAGGCC 59.626 47.826 0.00 0.00 0.00 5.19
291 292 4.000988 TGGTTTTCTTTCGTATCTCAGGC 58.999 43.478 0.00 0.00 0.00 4.85
292 293 6.816640 TGTATGGTTTTCTTTCGTATCTCAGG 59.183 38.462 0.00 0.00 0.00 3.86
293 294 7.759886 TCTGTATGGTTTTCTTTCGTATCTCAG 59.240 37.037 0.00 0.00 0.00 3.35
294 295 7.608153 TCTGTATGGTTTTCTTTCGTATCTCA 58.392 34.615 0.00 0.00 0.00 3.27
295 296 8.475331 TTCTGTATGGTTTTCTTTCGTATCTC 57.525 34.615 0.00 0.00 0.00 2.75
296 297 8.842358 TTTCTGTATGGTTTTCTTTCGTATCT 57.158 30.769 0.00 0.00 0.00 1.98
297 298 9.326339 GTTTTCTGTATGGTTTTCTTTCGTATC 57.674 33.333 0.00 0.00 0.00 2.24
298 299 8.013378 CGTTTTCTGTATGGTTTTCTTTCGTAT 58.987 33.333 0.00 0.00 0.00 3.06
299 300 7.224362 TCGTTTTCTGTATGGTTTTCTTTCGTA 59.776 33.333 0.00 0.00 0.00 3.43
300 301 6.037391 TCGTTTTCTGTATGGTTTTCTTTCGT 59.963 34.615 0.00 0.00 0.00 3.85
301 302 6.356190 GTCGTTTTCTGTATGGTTTTCTTTCG 59.644 38.462 0.00 0.00 0.00 3.46
302 303 6.356190 CGTCGTTTTCTGTATGGTTTTCTTTC 59.644 38.462 0.00 0.00 0.00 2.62
303 304 6.037391 TCGTCGTTTTCTGTATGGTTTTCTTT 59.963 34.615 0.00 0.00 0.00 2.52
304 305 5.524646 TCGTCGTTTTCTGTATGGTTTTCTT 59.475 36.000 0.00 0.00 0.00 2.52
305 306 5.051816 TCGTCGTTTTCTGTATGGTTTTCT 58.948 37.500 0.00 0.00 0.00 2.52
306 307 5.333046 TCGTCGTTTTCTGTATGGTTTTC 57.667 39.130 0.00 0.00 0.00 2.29
307 308 5.738118 TTCGTCGTTTTCTGTATGGTTTT 57.262 34.783 0.00 0.00 0.00 2.43
308 309 5.738118 TTTCGTCGTTTTCTGTATGGTTT 57.262 34.783 0.00 0.00 0.00 3.27
309 310 5.738118 TTTTCGTCGTTTTCTGTATGGTT 57.262 34.783 0.00 0.00 0.00 3.67
310 311 5.738118 TTTTTCGTCGTTTTCTGTATGGT 57.262 34.783 0.00 0.00 0.00 3.55
357 358 2.093921 CACCACTTTTGTCCGGGTTTTT 60.094 45.455 0.00 0.00 0.00 1.94
358 359 1.478916 CACCACTTTTGTCCGGGTTTT 59.521 47.619 0.00 0.00 0.00 2.43
359 360 1.107945 CACCACTTTTGTCCGGGTTT 58.892 50.000 0.00 0.00 0.00 3.27
360 361 0.753848 CCACCACTTTTGTCCGGGTT 60.754 55.000 0.00 0.00 0.00 4.11
361 362 1.152839 CCACCACTTTTGTCCGGGT 60.153 57.895 0.00 0.00 0.00 5.28
362 363 1.901464 CCCACCACTTTTGTCCGGG 60.901 63.158 0.00 0.00 0.00 5.73
363 364 1.149627 TCCCACCACTTTTGTCCGG 59.850 57.895 0.00 0.00 0.00 5.14
364 365 0.464735 TGTCCCACCACTTTTGTCCG 60.465 55.000 0.00 0.00 0.00 4.79
365 366 1.770294 TTGTCCCACCACTTTTGTCC 58.230 50.000 0.00 0.00 0.00 4.02
366 367 3.878160 TTTTGTCCCACCACTTTTGTC 57.122 42.857 0.00 0.00 0.00 3.18
367 368 4.835284 AATTTTGTCCCACCACTTTTGT 57.165 36.364 0.00 0.00 0.00 2.83
368 369 5.525745 GGTTAATTTTGTCCCACCACTTTTG 59.474 40.000 0.00 0.00 0.00 2.44
369 370 5.676552 GGTTAATTTTGTCCCACCACTTTT 58.323 37.500 0.00 0.00 0.00 2.27
370 371 4.202172 CGGTTAATTTTGTCCCACCACTTT 60.202 41.667 0.00 0.00 0.00 2.66
371 372 3.319689 CGGTTAATTTTGTCCCACCACTT 59.680 43.478 0.00 0.00 0.00 3.16
372 373 2.888414 CGGTTAATTTTGTCCCACCACT 59.112 45.455 0.00 0.00 0.00 4.00
373 374 2.029739 CCGGTTAATTTTGTCCCACCAC 60.030 50.000 0.00 0.00 0.00 4.16
374 375 2.240279 CCGGTTAATTTTGTCCCACCA 58.760 47.619 0.00 0.00 0.00 4.17
375 376 1.067425 GCCGGTTAATTTTGTCCCACC 60.067 52.381 1.90 0.00 0.00 4.61
376 377 1.401800 CGCCGGTTAATTTTGTCCCAC 60.402 52.381 1.90 0.00 0.00 4.61
377 378 0.882474 CGCCGGTTAATTTTGTCCCA 59.118 50.000 1.90 0.00 0.00 4.37
378 379 0.171679 CCGCCGGTTAATTTTGTCCC 59.828 55.000 1.90 0.00 0.00 4.46
379 380 1.131693 CTCCGCCGGTTAATTTTGTCC 59.868 52.381 1.63 0.00 0.00 4.02
380 381 2.078392 TCTCCGCCGGTTAATTTTGTC 58.922 47.619 1.63 0.00 0.00 3.18
381 382 1.808343 GTCTCCGCCGGTTAATTTTGT 59.192 47.619 1.63 0.00 0.00 2.83
382 383 2.081462 AGTCTCCGCCGGTTAATTTTG 58.919 47.619 1.63 0.00 0.00 2.44
383 384 2.484742 AGTCTCCGCCGGTTAATTTT 57.515 45.000 1.63 0.00 0.00 1.82
384 385 2.419159 GGTAGTCTCCGCCGGTTAATTT 60.419 50.000 1.63 0.00 0.00 1.82
385 386 1.137675 GGTAGTCTCCGCCGGTTAATT 59.862 52.381 1.63 0.00 0.00 1.40
386 387 0.749049 GGTAGTCTCCGCCGGTTAAT 59.251 55.000 1.63 0.00 0.00 1.40
387 388 0.611618 TGGTAGTCTCCGCCGGTTAA 60.612 55.000 1.63 0.00 0.00 2.01
388 389 0.611618 TTGGTAGTCTCCGCCGGTTA 60.612 55.000 1.63 0.00 0.00 2.85
389 390 1.909781 TTGGTAGTCTCCGCCGGTT 60.910 57.895 1.63 0.00 0.00 4.44
390 391 2.283388 TTGGTAGTCTCCGCCGGT 60.283 61.111 1.63 0.00 0.00 5.28
391 392 2.183555 GTTGGTAGTCTCCGCCGG 59.816 66.667 0.00 0.00 0.00 6.13
392 393 1.153823 CAGTTGGTAGTCTCCGCCG 60.154 63.158 0.00 0.00 0.00 6.46
393 394 1.448013 GCAGTTGGTAGTCTCCGCC 60.448 63.158 0.00 0.00 0.00 6.13
394 395 0.037232 AAGCAGTTGGTAGTCTCCGC 60.037 55.000 0.00 0.00 0.00 5.54
395 396 1.272490 TGAAGCAGTTGGTAGTCTCCG 59.728 52.381 0.00 0.00 0.00 4.63
396 397 3.618690 ATGAAGCAGTTGGTAGTCTCC 57.381 47.619 0.00 0.00 0.00 3.71
397 398 5.967088 TCTAATGAAGCAGTTGGTAGTCTC 58.033 41.667 0.00 0.00 0.00 3.36
398 399 6.360370 TTCTAATGAAGCAGTTGGTAGTCT 57.640 37.500 0.00 0.00 0.00 3.24
399 400 6.654793 CTTCTAATGAAGCAGTTGGTAGTC 57.345 41.667 0.00 0.00 42.50 2.59
412 413 9.587772 GCAAACTACATCTCTACTTCTAATGAA 57.412 33.333 0.00 0.00 0.00 2.57
413 414 8.198109 GGCAAACTACATCTCTACTTCTAATGA 58.802 37.037 0.00 0.00 0.00 2.57
414 415 7.981789 TGGCAAACTACATCTCTACTTCTAATG 59.018 37.037 0.00 0.00 0.00 1.90
415 416 8.079211 TGGCAAACTACATCTCTACTTCTAAT 57.921 34.615 0.00 0.00 0.00 1.73
416 417 7.178628 ACTGGCAAACTACATCTCTACTTCTAA 59.821 37.037 0.00 0.00 0.00 2.10
417 418 6.663953 ACTGGCAAACTACATCTCTACTTCTA 59.336 38.462 0.00 0.00 0.00 2.10
418 419 5.482175 ACTGGCAAACTACATCTCTACTTCT 59.518 40.000 0.00 0.00 0.00 2.85
419 420 5.578727 CACTGGCAAACTACATCTCTACTTC 59.421 44.000 0.00 0.00 0.00 3.01
420 421 5.482908 CACTGGCAAACTACATCTCTACTT 58.517 41.667 0.00 0.00 0.00 2.24
421 422 4.081420 CCACTGGCAAACTACATCTCTACT 60.081 45.833 0.00 0.00 0.00 2.57
422 423 4.184629 CCACTGGCAAACTACATCTCTAC 58.815 47.826 0.00 0.00 0.00 2.59
423 424 3.838317 ACCACTGGCAAACTACATCTCTA 59.162 43.478 0.00 0.00 0.00 2.43
424 425 2.639839 ACCACTGGCAAACTACATCTCT 59.360 45.455 0.00 0.00 0.00 3.10
425 426 2.744202 CACCACTGGCAAACTACATCTC 59.256 50.000 0.00 0.00 0.00 2.75
426 427 2.553028 CCACCACTGGCAAACTACATCT 60.553 50.000 0.00 0.00 0.00 2.90
438 439 0.531532 GCGATCAGATCCACCACTGG 60.532 60.000 4.73 0.00 39.23 4.00
439 440 0.463204 AGCGATCAGATCCACCACTG 59.537 55.000 4.73 0.00 35.72 3.66
482 483 6.049955 AGTCAGCAAATAGTAAAGTAGGCA 57.950 37.500 0.00 0.00 0.00 4.75
554 555 4.689612 AAACATACACACTGGTCTCTGT 57.310 40.909 0.00 0.00 0.00 3.41
739 742 1.682684 CGGCTCCCTGACCAGTAGT 60.683 63.158 0.00 0.00 0.00 2.73
740 743 3.082579 GCGGCTCCCTGACCAGTAG 62.083 68.421 0.00 0.00 0.00 2.57
741 744 3.075005 GCGGCTCCCTGACCAGTA 61.075 66.667 0.00 0.00 0.00 2.74
804 807 4.368543 GTGGTCGGACCGGACACC 62.369 72.222 21.52 19.28 42.58 4.16
805 808 4.368543 GGTGGTCGGACCGGACAC 62.369 72.222 24.48 24.48 42.58 3.67
944 953 1.005394 TGGTCGGCGGTCTCTTTTC 60.005 57.895 7.21 0.00 0.00 2.29
1071 1086 0.108138 CGAGGAAGAAGGTGGCGAAT 60.108 55.000 0.00 0.00 0.00 3.34
1194 1209 1.933021 ACCTAGGTGTTGGATCGTGA 58.067 50.000 15.42 0.00 0.00 4.35
1214 1230 6.874134 ACTAGTAACAAAATGACTCGAGCATT 59.126 34.615 21.65 21.65 37.56 3.56
1247 1296 5.340863 CCCCATTCCCTTTAGAAACTACCAT 60.341 44.000 0.00 0.00 0.00 3.55
1280 1329 6.092259 AGCAAATAATTACCACGAGAACTCAC 59.908 38.462 0.00 0.00 0.00 3.51
1310 1499 6.772233 ACGCTAGCAGATGATCATAGATAGAT 59.228 38.462 25.39 15.24 0.00 1.98
1311 1500 6.038050 CACGCTAGCAGATGATCATAGATAGA 59.962 42.308 25.39 6.38 0.00 1.98
1312 1501 6.200808 CACGCTAGCAGATGATCATAGATAG 58.799 44.000 20.40 20.40 0.00 2.08
1313 1502 5.067023 CCACGCTAGCAGATGATCATAGATA 59.933 44.000 16.45 6.79 0.00 1.98
1333 1522 3.334691 ACACCAGTTAATCATGACCACG 58.665 45.455 0.00 0.00 0.00 4.94
1382 1573 8.291740 CAGTCATTAACATTTTCACTGTCATGA 58.708 33.333 0.00 0.00 29.97 3.07
1383 1574 7.539710 CCAGTCATTAACATTTTCACTGTCATG 59.460 37.037 0.00 0.00 0.00 3.07
1384 1575 7.309377 CCCAGTCATTAACATTTTCACTGTCAT 60.309 37.037 0.00 0.00 0.00 3.06
1385 1576 6.016360 CCCAGTCATTAACATTTTCACTGTCA 60.016 38.462 0.00 0.00 0.00 3.58
1386 1577 6.016276 ACCCAGTCATTAACATTTTCACTGTC 60.016 38.462 0.00 0.00 0.00 3.51
1387 1578 5.833131 ACCCAGTCATTAACATTTTCACTGT 59.167 36.000 0.00 0.00 0.00 3.55
1388 1579 6.331369 ACCCAGTCATTAACATTTTCACTG 57.669 37.500 0.00 0.00 0.00 3.66
1440 1631 5.485708 CCCTTAATTACAAACCCCCATTTCA 59.514 40.000 0.00 0.00 0.00 2.69
1456 1650 5.361857 CAGAAACTGATGCATCCCCTTAATT 59.638 40.000 23.67 9.04 32.44 1.40
1457 1651 4.891756 CAGAAACTGATGCATCCCCTTAAT 59.108 41.667 23.67 3.87 32.44 1.40
1458 1652 4.272489 CAGAAACTGATGCATCCCCTTAA 58.728 43.478 23.67 3.07 32.44 1.85
1459 1653 3.889815 CAGAAACTGATGCATCCCCTTA 58.110 45.455 23.67 3.83 32.44 2.69
1543 1737 3.068732 TCATAGAGGAAGATGCCAACTCG 59.931 47.826 0.00 0.00 33.58 4.18
1598 1796 5.683743 GCTCATGAGTTTCGTCTACTATGAC 59.316 44.000 23.38 0.00 0.00 3.06
1626 1824 9.698309 CCTCTATACACAAAATACAGGTGATAG 57.302 37.037 0.00 0.00 36.42 2.08
1650 1848 1.333636 ATCAGACGCCTTGCTAGCCT 61.334 55.000 13.29 0.00 0.00 4.58
1658 1856 2.286365 TCCCAAAAATCAGACGCCTT 57.714 45.000 0.00 0.00 0.00 4.35
1820 2018 4.751098 CCAACCCAGAAATTCATTGTGTTG 59.249 41.667 0.00 0.25 30.51 3.33
1822 2020 4.039124 GTCCAACCCAGAAATTCATTGTGT 59.961 41.667 0.00 0.00 30.51 3.72
1856 2054 5.075858 TCATTGTTTGATCTGGCCAAATC 57.924 39.130 12.46 12.46 36.14 2.17
1953 2151 6.208797 CCCTTTAGTTTAAACCTGGAGAAAGG 59.791 42.308 21.29 21.29 43.57 3.11
2006 2204 6.769822 AGAGAAGGGCAATTATTGAGTACATG 59.230 38.462 9.36 0.00 0.00 3.21
2299 2497 1.617850 TGCCCAAATAGCCAAACACTG 59.382 47.619 0.00 0.00 0.00 3.66
2324 2522 0.590682 CACAGGTTTACATGCGTGCA 59.409 50.000 5.64 0.00 0.00 4.57
2453 2837 6.429078 CAGGCATGCAGTTATATATGAACACT 59.571 38.462 21.36 0.00 0.00 3.55
2606 2991 4.185394 CAAGCAATGCAAGCATGGATTAA 58.815 39.130 12.10 0.00 44.68 1.40
2692 3078 2.605825 TCCCCCAAGATTATGGAGGT 57.394 50.000 0.00 0.00 43.54 3.85
2696 3082 6.782000 TCATGTAAAATCCCCCAAGATTATGG 59.218 38.462 0.00 0.00 35.40 2.74
2697 3083 7.287466 TGTCATGTAAAATCCCCCAAGATTATG 59.713 37.037 0.00 0.00 35.40 1.90
2698 3084 7.361438 TGTCATGTAAAATCCCCCAAGATTAT 58.639 34.615 0.00 0.00 35.40 1.28
2699 3085 6.736581 TGTCATGTAAAATCCCCCAAGATTA 58.263 36.000 0.00 0.00 35.40 1.75
2700 3086 5.588845 TGTCATGTAAAATCCCCCAAGATT 58.411 37.500 0.00 0.00 38.11 2.40
2701 3087 5.203528 CTGTCATGTAAAATCCCCCAAGAT 58.796 41.667 0.00 0.00 0.00 2.40
2702 3088 4.599041 CTGTCATGTAAAATCCCCCAAGA 58.401 43.478 0.00 0.00 0.00 3.02
2703 3089 3.131046 GCTGTCATGTAAAATCCCCCAAG 59.869 47.826 0.00 0.00 0.00 3.61
2704 3090 3.096092 GCTGTCATGTAAAATCCCCCAA 58.904 45.455 0.00 0.00 0.00 4.12
2705 3091 2.622977 GGCTGTCATGTAAAATCCCCCA 60.623 50.000 0.00 0.00 0.00 4.96
2706 3092 2.031870 GGCTGTCATGTAAAATCCCCC 58.968 52.381 0.00 0.00 0.00 5.40
2707 3093 3.018423 AGGCTGTCATGTAAAATCCCC 57.982 47.619 0.00 0.00 0.00 4.81
2708 3094 4.016444 TGAAGGCTGTCATGTAAAATCCC 58.984 43.478 0.00 0.00 0.00 3.85
2768 3154 6.540189 TCCATTACATTCTAGAAGCAGAAAGC 59.460 38.462 11.53 0.00 46.19 3.51
2854 3241 2.445682 ACCAGCCACCAAAACAAGTA 57.554 45.000 0.00 0.00 0.00 2.24
2864 3251 2.755103 CAGGAGAAAAATACCAGCCACC 59.245 50.000 0.00 0.00 0.00 4.61
3081 3471 3.722908 ACTACTCAGCTCAGAGTACCA 57.277 47.619 9.30 0.00 46.52 3.25
3622 4013 2.224161 ACAAGGCTGAGACTGAAGTGAC 60.224 50.000 0.00 0.00 0.00 3.67
3698 4089 3.689347 ACACATAAGCAAATCTGAGCCA 58.311 40.909 0.00 0.00 0.00 4.75
3878 4269 6.039717 AGCTTTATATGCAATGATGAAACGGT 59.960 34.615 0.00 0.00 0.00 4.83
4000 4391 8.677300 CAGTTTGACCTAAGTATGCATAAATGT 58.323 33.333 8.28 1.85 0.00 2.71
4148 4539 6.365050 GCTATGTTGAGCAAAAACAAATTGG 58.635 36.000 0.00 0.00 40.69 3.16
4154 4545 3.313803 TCACGCTATGTTGAGCAAAAACA 59.686 39.130 1.98 1.98 42.99 2.83
4155 4546 3.664025 GTCACGCTATGTTGAGCAAAAAC 59.336 43.478 0.00 0.00 42.99 2.43
4174 4565 6.979817 GGCACATAAATTTCAATATGCTGTCA 59.020 34.615 4.64 0.00 33.71 3.58
4366 4757 2.757314 TGCAGGTTCACACACAATTTCA 59.243 40.909 0.00 0.00 0.00 2.69
4453 4844 6.494893 TCATGGCTTAACATTAACAGACAC 57.505 37.500 0.00 0.00 0.00 3.67
4569 4962 1.960689 TCTGCTTTGCCTTGGGTAAAC 59.039 47.619 0.00 0.00 32.68 2.01
4570 4963 2.238521 CTCTGCTTTGCCTTGGGTAAA 58.761 47.619 0.49 0.49 35.08 2.01
4571 4964 1.144913 ACTCTGCTTTGCCTTGGGTAA 59.855 47.619 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.