Multiple sequence alignment - TraesCS6A01G289100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G289100 chr6A 100.000 3659 0 0 1 3659 520878044 520874386 0.000000e+00 6758.0
1 TraesCS6A01G289100 chr6A 95.695 302 13 0 2855 3156 400130335 400130636 1.530000e-133 486.0
2 TraesCS6A01G289100 chr6B 89.430 2157 111 37 748 2856 566543094 566541007 0.000000e+00 2612.0
3 TraesCS6A01G289100 chr6B 88.710 310 31 4 298 605 566543368 566543061 3.450000e-100 375.0
4 TraesCS6A01G289100 chr6B 89.005 191 14 5 3464 3654 566540771 566540588 2.840000e-56 230.0
5 TraesCS6A01G289100 chr6B 89.444 180 14 2 3155 3334 566541007 566540833 4.760000e-54 222.0
6 TraesCS6A01G289100 chr6D 91.754 1140 82 8 1720 2856 379717769 379718899 0.000000e+00 1574.0
7 TraesCS6A01G289100 chr6D 88.183 677 27 15 776 1440 379716918 379717553 0.000000e+00 758.0
8 TraesCS6A01G289100 chr6D 92.262 168 12 1 109 276 324602404 324602570 1.700000e-58 237.0
9 TraesCS6A01G289100 chr6D 88.083 193 19 4 108 298 260931953 260931763 3.680000e-55 226.0
10 TraesCS6A01G289100 chr6D 90.909 143 9 4 3519 3659 379719553 379719693 4.820000e-44 189.0
11 TraesCS6A01G289100 chr6D 100.000 28 0 0 575 602 379716792 379716819 7.000000e-03 52.8
12 TraesCS6A01G289100 chr1A 99.010 303 3 0 2854 3156 564346333 564346031 8.940000e-151 544.0
13 TraesCS6A01G289100 chr1A 99.007 302 3 0 2855 3156 579207363 579207062 3.210000e-150 542.0
14 TraesCS6A01G289100 chr2A 98.020 303 6 0 2855 3157 510194946 510195248 9.000000e-146 527.0
15 TraesCS6A01G289100 chr2A 97.682 302 7 0 2856 3157 767765705 767766006 1.510000e-143 520.0
16 TraesCS6A01G289100 chr7A 97.351 302 8 0 2854 3155 691677332 691677633 7.010000e-142 514.0
17 TraesCS6A01G289100 chr7A 96.346 301 11 0 2855 3155 32864729 32864429 2.540000e-136 496.0
18 TraesCS6A01G289100 chr7A 97.535 284 7 0 2872 3155 691677960 691678243 1.530000e-133 486.0
19 TraesCS6A01G289100 chr3A 95.050 303 15 0 2855 3157 181696642 181696944 9.190000e-131 477.0
20 TraesCS6A01G289100 chr3D 93.023 172 10 2 112 283 472443010 472442841 2.180000e-62 250.0
21 TraesCS6A01G289100 chr3D 92.353 170 11 2 112 280 250054184 250054016 1.310000e-59 241.0
22 TraesCS6A01G289100 chr3D 84.211 95 12 3 590 681 301579460 301579554 5.030000e-14 89.8
23 TraesCS6A01G289100 chr3D 84.211 95 12 3 20 111 546614993 546614899 5.030000e-14 89.8
24 TraesCS6A01G289100 chr3B 92.982 171 11 1 111 281 666692236 666692405 7.850000e-62 248.0
25 TraesCS6A01G289100 chr3B 83.505 97 9 6 20 111 723621869 723621775 2.340000e-12 84.2
26 TraesCS6A01G289100 chr2D 90.860 186 11 5 112 295 142056949 142056768 1.010000e-60 244.0
27 TraesCS6A01G289100 chr5A 92.771 166 11 1 111 276 436260735 436260571 4.720000e-59 239.0
28 TraesCS6A01G289100 chr5D 92.727 165 11 1 112 276 547239875 547239712 1.700000e-58 237.0
29 TraesCS6A01G289100 chr4D 91.329 173 14 1 104 276 475146211 475146382 6.110000e-58 235.0
30 TraesCS6A01G289100 chr7B 84.167 120 18 1 559 677 656524500 656524619 8.300000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G289100 chr6A 520874386 520878044 3658 True 6758.00 6758 100.00000 1 3659 1 chr6A.!!$R1 3658
1 TraesCS6A01G289100 chr6B 566540588 566543368 2780 True 859.75 2612 89.14725 298 3654 4 chr6B.!!$R1 3356
2 TraesCS6A01G289100 chr6D 379716792 379719693 2901 False 643.45 1574 92.71150 575 3659 4 chr6D.!!$F2 3084
3 TraesCS6A01G289100 chr7A 691677332 691678243 911 False 500.00 514 97.44300 2854 3155 2 chr7A.!!$F1 301

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 536 0.250727 TGAGTTAGCAGGCACCCAAC 60.251 55.0 0.00 0.0 0.00 3.77 F
1193 1341 0.257328 ATCGCTCTCTCCAGTCTCCA 59.743 55.0 0.00 0.0 0.00 3.86 F
1718 1875 0.520404 GATGGCGCTGCATAAGGATG 59.480 55.0 7.64 0.0 36.02 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1703 1860 0.029834 CAACCATCCTTATGCAGCGC 59.970 55.0 0.0 0.0 0.00 5.92 R
2022 2179 0.179148 TGTACGCCATACAGCACTCG 60.179 55.0 0.0 0.0 38.95 4.18 R
3414 3864 0.030909 TAAGGCATCCCTACCCCGAA 60.031 55.0 0.0 0.0 41.90 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.606096 GCATGGTACCAAACAACCCC 59.394 55.000 20.76 0.00 34.69 4.95
20 21 1.825641 GCATGGTACCAAACAACCCCT 60.826 52.381 20.76 0.00 34.69 4.79
21 22 2.555670 GCATGGTACCAAACAACCCCTA 60.556 50.000 20.76 0.00 34.69 3.53
22 23 3.768878 CATGGTACCAAACAACCCCTAA 58.231 45.455 20.76 0.00 34.69 2.69
23 24 3.967467 TGGTACCAAACAACCCCTAAA 57.033 42.857 13.60 0.00 34.69 1.85
24 25 4.472690 TGGTACCAAACAACCCCTAAAT 57.527 40.909 13.60 0.00 34.69 1.40
25 26 5.595814 TGGTACCAAACAACCCCTAAATA 57.404 39.130 13.60 0.00 34.69 1.40
26 27 6.155247 TGGTACCAAACAACCCCTAAATAT 57.845 37.500 13.60 0.00 34.69 1.28
27 28 6.563163 TGGTACCAAACAACCCCTAAATATT 58.437 36.000 13.60 0.00 34.69 1.28
28 29 7.706674 TGGTACCAAACAACCCCTAAATATTA 58.293 34.615 13.60 0.00 34.69 0.98
29 30 8.175431 TGGTACCAAACAACCCCTAAATATTAA 58.825 33.333 13.60 0.00 34.69 1.40
30 31 9.033711 GGTACCAAACAACCCCTAAATATTAAA 57.966 33.333 7.15 0.00 0.00 1.52
70 71 9.979578 AATCAAGATTTTTAACTACAACATGCA 57.020 25.926 0.00 0.00 0.00 3.96
71 72 8.795786 TCAAGATTTTTAACTACAACATGCAC 57.204 30.769 0.00 0.00 0.00 4.57
72 73 8.629158 TCAAGATTTTTAACTACAACATGCACT 58.371 29.630 0.00 0.00 0.00 4.40
73 74 9.248291 CAAGATTTTTAACTACAACATGCACTT 57.752 29.630 0.00 0.00 0.00 3.16
74 75 9.816354 AAGATTTTTAACTACAACATGCACTTT 57.184 25.926 0.00 0.00 0.00 2.66
75 76 9.816354 AGATTTTTAACTACAACATGCACTTTT 57.184 25.926 0.00 0.00 0.00 2.27
117 118 8.935614 ATTAAGGCACCTTATAAAATACTCCC 57.064 34.615 9.90 0.00 38.20 4.30
118 119 6.592207 AAGGCACCTTATAAAATACTCCCT 57.408 37.500 0.00 0.00 34.05 4.20
119 120 6.189036 AGGCACCTTATAAAATACTCCCTC 57.811 41.667 0.00 0.00 0.00 4.30
120 121 5.073280 AGGCACCTTATAAAATACTCCCTCC 59.927 44.000 0.00 0.00 0.00 4.30
121 122 4.995487 GCACCTTATAAAATACTCCCTCCG 59.005 45.833 0.00 0.00 0.00 4.63
122 123 5.454329 GCACCTTATAAAATACTCCCTCCGT 60.454 44.000 0.00 0.00 0.00 4.69
123 124 6.589135 CACCTTATAAAATACTCCCTCCGTT 58.411 40.000 0.00 0.00 0.00 4.44
124 125 6.704937 CACCTTATAAAATACTCCCTCCGTTC 59.295 42.308 0.00 0.00 0.00 3.95
125 126 6.183361 ACCTTATAAAATACTCCCTCCGTTCC 60.183 42.308 0.00 0.00 0.00 3.62
126 127 6.042897 CCTTATAAAATACTCCCTCCGTTCCT 59.957 42.308 0.00 0.00 0.00 3.36
127 128 7.234166 CCTTATAAAATACTCCCTCCGTTCCTA 59.766 40.741 0.00 0.00 0.00 2.94
128 129 8.551682 TTATAAAATACTCCCTCCGTTCCTAA 57.448 34.615 0.00 0.00 0.00 2.69
129 130 5.767277 AAAATACTCCCTCCGTTCCTAAA 57.233 39.130 0.00 0.00 0.00 1.85
130 131 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
131 132 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
132 133 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
133 134 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
134 135 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
135 136 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
136 137 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
137 138 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
138 139 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
139 140 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
140 141 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
141 142 6.653740 CCTCCGTTCCTAAATGTAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
142 143 7.174426 CCTCCGTTCCTAAATGTAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
143 144 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
144 145 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
145 146 9.211485 CCGTTCCTAAATGTAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 0.00 2.10
217 218 9.846248 AGAGTGTACATTCATTTATTTTTGCTC 57.154 29.630 19.24 6.10 0.00 4.26
218 219 8.986477 AGTGTACATTCATTTATTTTTGCTCC 57.014 30.769 0.00 0.00 0.00 4.70
219 220 8.584157 AGTGTACATTCATTTATTTTTGCTCCA 58.416 29.630 0.00 0.00 0.00 3.86
220 221 9.369904 GTGTACATTCATTTATTTTTGCTCCAT 57.630 29.630 0.00 0.00 0.00 3.41
231 232 9.461312 TTTATTTTTGCTCCATATGTAGTCACT 57.539 29.630 1.24 0.00 0.00 3.41
232 233 7.944729 ATTTTTGCTCCATATGTAGTCACTT 57.055 32.000 1.24 0.00 0.00 3.16
233 234 6.741992 TTTTGCTCCATATGTAGTCACTTG 57.258 37.500 1.24 0.00 0.00 3.16
234 235 4.406648 TGCTCCATATGTAGTCACTTGG 57.593 45.455 1.24 0.00 33.09 3.61
235 236 3.774766 TGCTCCATATGTAGTCACTTGGT 59.225 43.478 1.24 0.00 33.38 3.67
236 237 4.122776 GCTCCATATGTAGTCACTTGGTG 58.877 47.826 1.24 0.00 33.38 4.17
237 238 4.697514 CTCCATATGTAGTCACTTGGTGG 58.302 47.826 1.24 0.00 33.87 4.61
238 239 4.358214 TCCATATGTAGTCACTTGGTGGA 58.642 43.478 1.24 0.00 33.87 4.02
239 240 4.405680 TCCATATGTAGTCACTTGGTGGAG 59.594 45.833 1.24 0.00 33.87 3.86
240 241 4.162320 CCATATGTAGTCACTTGGTGGAGT 59.838 45.833 1.24 0.00 33.87 3.85
241 242 5.338381 CCATATGTAGTCACTTGGTGGAGTT 60.338 44.000 1.24 0.00 33.87 3.01
242 243 4.706842 ATGTAGTCACTTGGTGGAGTTT 57.293 40.909 0.00 0.00 33.87 2.66
243 244 4.067972 TGTAGTCACTTGGTGGAGTTTC 57.932 45.455 0.00 0.00 33.87 2.78
244 245 3.709653 TGTAGTCACTTGGTGGAGTTTCT 59.290 43.478 0.00 0.00 33.87 2.52
245 246 4.897076 TGTAGTCACTTGGTGGAGTTTCTA 59.103 41.667 0.00 0.00 33.87 2.10
246 247 4.608948 AGTCACTTGGTGGAGTTTCTAG 57.391 45.455 0.00 0.00 33.87 2.43
247 248 4.223953 AGTCACTTGGTGGAGTTTCTAGA 58.776 43.478 0.00 0.00 33.87 2.43
248 249 4.654262 AGTCACTTGGTGGAGTTTCTAGAA 59.346 41.667 0.00 0.00 33.87 2.10
249 250 5.130477 AGTCACTTGGTGGAGTTTCTAGAAA 59.870 40.000 13.99 13.99 33.87 2.52
250 251 5.467063 GTCACTTGGTGGAGTTTCTAGAAAG 59.533 44.000 18.22 5.88 33.87 2.62
251 252 5.365605 TCACTTGGTGGAGTTTCTAGAAAGA 59.634 40.000 18.22 4.92 33.87 2.52
252 253 5.467063 CACTTGGTGGAGTTTCTAGAAAGAC 59.533 44.000 18.22 13.99 0.00 3.01
253 254 5.367060 ACTTGGTGGAGTTTCTAGAAAGACT 59.633 40.000 18.22 13.37 0.00 3.24
254 255 5.888982 TGGTGGAGTTTCTAGAAAGACTT 57.111 39.130 18.22 4.85 0.00 3.01
255 256 6.989155 TGGTGGAGTTTCTAGAAAGACTTA 57.011 37.500 18.22 4.96 0.00 2.24
256 257 7.554959 TGGTGGAGTTTCTAGAAAGACTTAT 57.445 36.000 18.22 1.05 0.00 1.73
257 258 8.660295 TGGTGGAGTTTCTAGAAAGACTTATA 57.340 34.615 18.22 1.41 0.00 0.98
258 259 9.268282 TGGTGGAGTTTCTAGAAAGACTTATAT 57.732 33.333 18.22 0.00 0.00 0.86
271 272 9.198475 AGAAAGACTTATATTTAGGAACGGAGA 57.802 33.333 0.00 0.00 0.00 3.71
272 273 9.465985 GAAAGACTTATATTTAGGAACGGAGAG 57.534 37.037 0.00 0.00 0.00 3.20
273 274 8.763984 AAGACTTATATTTAGGAACGGAGAGA 57.236 34.615 0.00 0.00 0.00 3.10
274 275 8.398878 AGACTTATATTTAGGAACGGAGAGAG 57.601 38.462 0.00 0.00 0.00 3.20
275 276 8.000127 AGACTTATATTTAGGAACGGAGAGAGT 59.000 37.037 0.00 0.00 0.00 3.24
276 277 7.942990 ACTTATATTTAGGAACGGAGAGAGTG 58.057 38.462 0.00 0.00 0.00 3.51
277 278 7.560626 ACTTATATTTAGGAACGGAGAGAGTGT 59.439 37.037 0.00 0.00 0.00 3.55
278 279 8.985315 TTATATTTAGGAACGGAGAGAGTGTA 57.015 34.615 0.00 0.00 0.00 2.90
279 280 9.584008 TTATATTTAGGAACGGAGAGAGTGTAT 57.416 33.333 0.00 0.00 0.00 2.29
281 282 7.893124 ATTTAGGAACGGAGAGAGTGTATAA 57.107 36.000 0.00 0.00 0.00 0.98
282 283 7.707624 TTTAGGAACGGAGAGAGTGTATAAA 57.292 36.000 0.00 0.00 0.00 1.40
283 284 7.893124 TTAGGAACGGAGAGAGTGTATAAAT 57.107 36.000 0.00 0.00 0.00 1.40
284 285 8.985315 TTAGGAACGGAGAGAGTGTATAAATA 57.015 34.615 0.00 0.00 0.00 1.40
285 286 7.274603 AGGAACGGAGAGAGTGTATAAATAC 57.725 40.000 0.00 0.00 0.00 1.89
286 287 6.832384 AGGAACGGAGAGAGTGTATAAATACA 59.168 38.462 0.00 0.00 40.69 2.29
287 288 7.506261 AGGAACGGAGAGAGTGTATAAATACAT 59.494 37.037 6.12 0.00 44.25 2.29
288 289 8.790718 GGAACGGAGAGAGTGTATAAATACATA 58.209 37.037 6.12 0.00 44.25 2.29
327 328 8.691797 GCCCTGATTTTTATTTACAAGGACATA 58.308 33.333 0.00 0.00 0.00 2.29
391 393 5.927281 ATGAAGATTTTGGATCCAACCAG 57.073 39.130 27.04 0.00 41.19 4.00
394 396 2.178580 GATTTTGGATCCAACCAGGCA 58.821 47.619 27.04 8.50 41.19 4.75
395 397 1.631405 TTTTGGATCCAACCAGGCAG 58.369 50.000 27.04 0.00 41.19 4.85
396 398 0.251742 TTTGGATCCAACCAGGCAGG 60.252 55.000 27.04 0.00 41.19 4.85
415 417 2.264480 CCGATCCAAGCACGACCA 59.736 61.111 0.00 0.00 0.00 4.02
424 426 2.223377 CCAAGCACGACCAGTTTTACTC 59.777 50.000 0.00 0.00 0.00 2.59
426 428 1.414919 AGCACGACCAGTTTTACTCCA 59.585 47.619 0.00 0.00 0.00 3.86
429 431 3.399330 CACGACCAGTTTTACTCCACAT 58.601 45.455 0.00 0.00 0.00 3.21
435 437 3.432252 CCAGTTTTACTCCACATCGTGTC 59.568 47.826 0.00 0.00 0.00 3.67
436 438 4.055360 CAGTTTTACTCCACATCGTGTCA 58.945 43.478 0.00 0.00 0.00 3.58
494 497 7.325694 TCGACCCAAAGTCCTAAGTTTAATAG 58.674 38.462 0.00 0.00 43.08 1.73
521 524 6.352516 AGAAGGGAATGCTATGTTGAGTTAG 58.647 40.000 0.00 0.00 0.00 2.34
526 529 2.632377 TGCTATGTTGAGTTAGCAGGC 58.368 47.619 0.73 0.00 44.32 4.85
527 530 2.027285 TGCTATGTTGAGTTAGCAGGCA 60.027 45.455 0.73 0.00 44.32 4.75
533 536 0.250727 TGAGTTAGCAGGCACCCAAC 60.251 55.000 0.00 0.00 0.00 3.77
536 539 0.313987 GTTAGCAGGCACCCAACAAC 59.686 55.000 0.00 0.00 0.00 3.32
547 550 3.389221 CACCCAACAACACAAATAAGGC 58.611 45.455 0.00 0.00 0.00 4.35
561 564 9.705290 ACACAAATAAGGCTTTATAAAAACCTG 57.295 29.630 16.44 9.49 30.98 4.00
605 708 3.446161 AGGAGGATGACATTTACGAACGA 59.554 43.478 0.14 0.00 0.00 3.85
606 709 4.099573 AGGAGGATGACATTTACGAACGAT 59.900 41.667 0.14 0.00 0.00 3.73
607 710 4.809426 GGAGGATGACATTTACGAACGATT 59.191 41.667 0.14 0.00 0.00 3.34
608 711 5.293569 GGAGGATGACATTTACGAACGATTT 59.706 40.000 0.14 0.00 0.00 2.17
609 712 6.183360 GGAGGATGACATTTACGAACGATTTT 60.183 38.462 0.14 0.00 0.00 1.82
610 713 6.772078 AGGATGACATTTACGAACGATTTTC 58.228 36.000 0.14 0.00 0.00 2.29
611 714 6.370442 AGGATGACATTTACGAACGATTTTCA 59.630 34.615 0.14 0.00 0.00 2.69
612 715 7.065803 AGGATGACATTTACGAACGATTTTCAT 59.934 33.333 0.14 1.77 0.00 2.57
613 716 7.164171 GGATGACATTTACGAACGATTTTCATG 59.836 37.037 0.14 0.00 0.00 3.07
614 717 7.123160 TGACATTTACGAACGATTTTCATGA 57.877 32.000 0.14 0.00 0.00 3.07
615 718 7.012943 TGACATTTACGAACGATTTTCATGAC 58.987 34.615 0.00 0.00 0.00 3.06
616 719 6.893759 ACATTTACGAACGATTTTCATGACA 58.106 32.000 0.00 0.00 0.00 3.58
617 720 7.356540 ACATTTACGAACGATTTTCATGACAA 58.643 30.769 0.00 0.00 0.00 3.18
618 721 8.020819 ACATTTACGAACGATTTTCATGACAAT 58.979 29.630 6.80 6.80 0.00 2.71
619 722 8.849490 CATTTACGAACGATTTTCATGACAATT 58.151 29.630 8.44 0.00 0.00 2.32
620 723 8.789881 TTTACGAACGATTTTCATGACAATTT 57.210 26.923 8.44 0.49 0.00 1.82
621 724 8.789881 TTACGAACGATTTTCATGACAATTTT 57.210 26.923 8.44 5.55 0.00 1.82
622 725 9.880064 TTACGAACGATTTTCATGACAATTTTA 57.120 25.926 8.44 0.00 0.00 1.52
623 726 8.434870 ACGAACGATTTTCATGACAATTTTAG 57.565 30.769 8.44 7.99 0.00 1.85
624 727 8.073768 ACGAACGATTTTCATGACAATTTTAGT 58.926 29.630 8.44 8.50 0.00 2.24
625 728 8.901748 CGAACGATTTTCATGACAATTTTAGTT 58.098 29.630 8.44 11.54 0.00 2.24
633 736 8.760980 TTCATGACAATTTTAGTTATAGGGGG 57.239 34.615 0.00 0.00 0.00 5.40
634 737 7.878495 TCATGACAATTTTAGTTATAGGGGGT 58.122 34.615 0.00 0.00 0.00 4.95
635 738 7.777910 TCATGACAATTTTAGTTATAGGGGGTG 59.222 37.037 0.00 0.00 0.00 4.61
636 739 7.273457 TGACAATTTTAGTTATAGGGGGTGA 57.727 36.000 0.00 0.00 0.00 4.02
637 740 7.114095 TGACAATTTTAGTTATAGGGGGTGAC 58.886 38.462 0.00 0.00 0.00 3.67
638 741 7.034967 ACAATTTTAGTTATAGGGGGTGACA 57.965 36.000 0.00 0.00 0.00 3.58
639 742 7.471890 ACAATTTTAGTTATAGGGGGTGACAA 58.528 34.615 0.00 0.00 0.00 3.18
640 743 7.395206 ACAATTTTAGTTATAGGGGGTGACAAC 59.605 37.037 0.00 0.00 0.00 3.32
641 744 6.707273 TTTTAGTTATAGGGGGTGACAACT 57.293 37.500 0.00 0.00 0.00 3.16
642 745 6.707273 TTTAGTTATAGGGGGTGACAACTT 57.293 37.500 0.00 0.00 0.00 2.66
643 746 6.707273 TTAGTTATAGGGGGTGACAACTTT 57.293 37.500 0.00 0.00 0.00 2.66
644 747 5.594199 AGTTATAGGGGGTGACAACTTTT 57.406 39.130 0.00 0.00 0.00 2.27
645 748 5.960704 AGTTATAGGGGGTGACAACTTTTT 58.039 37.500 0.00 0.00 0.00 1.94
646 749 6.008331 AGTTATAGGGGGTGACAACTTTTTC 58.992 40.000 0.00 0.00 0.00 2.29
647 750 2.838637 AGGGGGTGACAACTTTTTCA 57.161 45.000 0.00 0.00 0.00 2.69
648 751 2.666317 AGGGGGTGACAACTTTTTCAG 58.334 47.619 0.00 0.00 0.00 3.02
649 752 1.686587 GGGGGTGACAACTTTTTCAGG 59.313 52.381 0.00 0.00 0.00 3.86
650 753 1.068588 GGGGTGACAACTTTTTCAGGC 59.931 52.381 0.00 0.00 0.00 4.85
651 754 2.031870 GGGTGACAACTTTTTCAGGCT 58.968 47.619 0.00 0.00 0.00 4.58
652 755 3.219281 GGGTGACAACTTTTTCAGGCTA 58.781 45.455 0.00 0.00 0.00 3.93
653 756 3.253432 GGGTGACAACTTTTTCAGGCTAG 59.747 47.826 0.00 0.00 0.00 3.42
654 757 3.304726 GGTGACAACTTTTTCAGGCTAGC 60.305 47.826 6.04 6.04 0.00 3.42
655 758 3.315191 GTGACAACTTTTTCAGGCTAGCA 59.685 43.478 18.24 0.00 0.00 3.49
656 759 4.022849 GTGACAACTTTTTCAGGCTAGCAT 60.023 41.667 18.24 6.55 0.00 3.79
657 760 4.022935 TGACAACTTTTTCAGGCTAGCATG 60.023 41.667 23.02 23.02 0.00 4.06
658 761 3.248266 CAACTTTTTCAGGCTAGCATGC 58.752 45.455 24.09 10.51 0.00 4.06
659 762 2.517959 ACTTTTTCAGGCTAGCATGCA 58.482 42.857 24.09 11.48 34.04 3.96
660 763 2.892852 ACTTTTTCAGGCTAGCATGCAA 59.107 40.909 24.09 17.31 34.04 4.08
661 764 3.512724 ACTTTTTCAGGCTAGCATGCAAT 59.487 39.130 24.09 2.50 34.04 3.56
662 765 4.020839 ACTTTTTCAGGCTAGCATGCAATT 60.021 37.500 24.09 8.34 34.04 2.32
663 766 3.788333 TTTCAGGCTAGCATGCAATTC 57.212 42.857 24.09 6.74 34.04 2.17
664 767 1.683943 TCAGGCTAGCATGCAATTCC 58.316 50.000 24.09 14.60 34.04 3.01
665 768 1.213678 TCAGGCTAGCATGCAATTCCT 59.786 47.619 24.09 16.61 34.04 3.36
666 769 2.029623 CAGGCTAGCATGCAATTCCTT 58.970 47.619 21.98 0.00 34.04 3.36
667 770 2.429610 CAGGCTAGCATGCAATTCCTTT 59.570 45.455 21.98 0.00 34.04 3.11
668 771 2.692041 AGGCTAGCATGCAATTCCTTTC 59.308 45.455 21.98 0.00 34.04 2.62
669 772 2.692041 GGCTAGCATGCAATTCCTTTCT 59.308 45.455 21.98 0.00 34.04 2.52
670 773 3.885297 GGCTAGCATGCAATTCCTTTCTA 59.115 43.478 21.98 0.00 34.04 2.10
671 774 4.261363 GGCTAGCATGCAATTCCTTTCTAC 60.261 45.833 21.98 0.00 34.04 2.59
672 775 4.336433 GCTAGCATGCAATTCCTTTCTACA 59.664 41.667 21.98 0.00 0.00 2.74
673 776 4.978083 AGCATGCAATTCCTTTCTACAG 57.022 40.909 21.98 0.00 0.00 2.74
674 777 4.592942 AGCATGCAATTCCTTTCTACAGA 58.407 39.130 21.98 0.00 0.00 3.41
675 778 5.012239 AGCATGCAATTCCTTTCTACAGAA 58.988 37.500 21.98 0.00 0.00 3.02
676 779 5.125097 AGCATGCAATTCCTTTCTACAGAAG 59.875 40.000 21.98 0.00 35.21 2.85
677 780 5.678107 GCATGCAATTCCTTTCTACAGAAGG 60.678 44.000 14.21 0.00 35.21 3.46
678 781 3.758554 TGCAATTCCTTTCTACAGAAGGC 59.241 43.478 0.00 0.00 35.21 4.35
679 782 3.758554 GCAATTCCTTTCTACAGAAGGCA 59.241 43.478 0.00 0.00 35.21 4.75
680 783 4.400567 GCAATTCCTTTCTACAGAAGGCAT 59.599 41.667 0.00 0.00 35.21 4.40
681 784 5.590259 GCAATTCCTTTCTACAGAAGGCATA 59.410 40.000 0.00 0.00 35.21 3.14
682 785 6.095440 GCAATTCCTTTCTACAGAAGGCATAA 59.905 38.462 0.00 0.00 35.21 1.90
683 786 7.362920 GCAATTCCTTTCTACAGAAGGCATAAA 60.363 37.037 0.00 0.00 35.21 1.40
684 787 8.522830 CAATTCCTTTCTACAGAAGGCATAAAA 58.477 33.333 0.00 0.00 35.21 1.52
685 788 7.448748 TTCCTTTCTACAGAAGGCATAAAAC 57.551 36.000 0.00 0.00 35.21 2.43
686 789 6.779860 TCCTTTCTACAGAAGGCATAAAACT 58.220 36.000 0.00 0.00 35.21 2.66
687 790 6.655003 TCCTTTCTACAGAAGGCATAAAACTG 59.345 38.462 0.00 0.00 35.21 3.16
688 791 5.880054 TTCTACAGAAGGCATAAAACTGC 57.120 39.130 0.00 0.00 41.53 4.40
698 801 3.832276 GCATAAAACTGCCATCGTTTGA 58.168 40.909 0.00 0.00 35.00 2.69
699 802 4.423732 GCATAAAACTGCCATCGTTTGAT 58.576 39.130 0.00 0.00 35.00 2.57
700 803 4.500477 GCATAAAACTGCCATCGTTTGATC 59.500 41.667 0.00 0.00 35.00 2.92
701 804 5.677091 GCATAAAACTGCCATCGTTTGATCT 60.677 40.000 0.00 0.00 35.00 2.75
702 805 4.425577 AAAACTGCCATCGTTTGATCTC 57.574 40.909 0.00 0.00 35.00 2.75
703 806 1.645034 ACTGCCATCGTTTGATCTCG 58.355 50.000 0.00 0.00 30.49 4.04
704 807 1.204704 ACTGCCATCGTTTGATCTCGA 59.795 47.619 9.65 9.65 40.28 4.04
705 808 2.159043 ACTGCCATCGTTTGATCTCGAT 60.159 45.455 12.52 12.52 45.63 3.59
706 809 2.473816 TGCCATCGTTTGATCTCGATC 58.526 47.619 14.42 0.00 43.43 3.69
707 810 2.159114 TGCCATCGTTTGATCTCGATCA 60.159 45.455 14.42 5.53 45.30 2.92
715 818 1.926561 TGATCTCGATCAAACGGCTG 58.073 50.000 7.12 0.00 44.14 4.85
716 819 1.204704 TGATCTCGATCAAACGGCTGT 59.795 47.619 7.12 0.00 44.14 4.40
717 820 1.590238 GATCTCGATCAAACGGCTGTG 59.410 52.381 0.00 0.00 37.74 3.66
718 821 0.601057 TCTCGATCAAACGGCTGTGA 59.399 50.000 0.00 0.00 0.00 3.58
719 822 0.994995 CTCGATCAAACGGCTGTGAG 59.005 55.000 0.00 0.00 0.00 3.51
720 823 0.389817 TCGATCAAACGGCTGTGAGG 60.390 55.000 0.00 0.00 0.00 3.86
721 824 1.361668 CGATCAAACGGCTGTGAGGG 61.362 60.000 0.00 0.00 0.00 4.30
722 825 1.648467 GATCAAACGGCTGTGAGGGC 61.648 60.000 0.00 0.00 0.00 5.19
737 840 3.491652 GGCGCTCGCTGGAAGTTC 61.492 66.667 7.64 0.00 41.60 3.01
738 841 3.491652 GCGCTCGCTGGAAGTTCC 61.492 66.667 15.50 15.50 38.26 3.62
739 842 2.815647 CGCTCGCTGGAAGTTCCC 60.816 66.667 19.42 3.79 35.03 3.97
740 843 2.665603 GCTCGCTGGAAGTTCCCT 59.334 61.111 19.42 0.00 35.03 4.20
741 844 1.448717 GCTCGCTGGAAGTTCCCTC 60.449 63.158 19.42 9.62 35.03 4.30
742 845 1.219393 CTCGCTGGAAGTTCCCTCC 59.781 63.158 19.42 6.48 35.03 4.30
743 846 2.245438 CTCGCTGGAAGTTCCCTCCC 62.245 65.000 19.42 4.08 35.03 4.30
744 847 2.592993 CGCTGGAAGTTCCCTCCCA 61.593 63.158 19.42 0.00 35.03 4.37
745 848 1.301293 GCTGGAAGTTCCCTCCCAG 59.699 63.158 19.42 10.95 46.67 4.45
746 849 1.301293 CTGGAAGTTCCCTCCCAGC 59.699 63.158 19.42 0.00 39.59 4.85
747 850 2.269241 GGAAGTTCCCTCCCAGCG 59.731 66.667 11.17 0.00 0.00 5.18
748 851 2.291043 GGAAGTTCCCTCCCAGCGA 61.291 63.158 11.17 0.00 0.00 4.93
749 852 1.677552 GAAGTTCCCTCCCAGCGAA 59.322 57.895 0.00 0.00 0.00 4.70
750 853 0.673956 GAAGTTCCCTCCCAGCGAAC 60.674 60.000 0.00 0.00 36.88 3.95
751 854 2.434359 GTTCCCTCCCAGCGAACG 60.434 66.667 0.00 0.00 0.00 3.95
752 855 2.920912 TTCCCTCCCAGCGAACGT 60.921 61.111 0.00 0.00 0.00 3.99
753 856 2.513259 TTCCCTCCCAGCGAACGTT 61.513 57.895 0.00 0.00 0.00 3.99
754 857 2.434359 CCCTCCCAGCGAACGTTC 60.434 66.667 18.47 18.47 0.00 3.95
763 866 3.156334 CGAACGTTCGCCAAGGAG 58.844 61.111 34.54 9.32 44.26 3.69
764 867 2.861006 GAACGTTCGCCAAGGAGC 59.139 61.111 13.36 0.00 0.00 4.70
765 868 1.959226 GAACGTTCGCCAAGGAGCA 60.959 57.895 13.36 0.00 0.00 4.26
766 869 1.901650 GAACGTTCGCCAAGGAGCAG 61.902 60.000 13.36 0.00 0.00 4.24
767 870 3.793144 CGTTCGCCAAGGAGCAGC 61.793 66.667 0.00 0.00 0.00 5.25
768 871 3.435186 GTTCGCCAAGGAGCAGCC 61.435 66.667 0.00 0.00 0.00 4.85
773 876 2.747855 CCAAGGAGCAGCCGGTTC 60.748 66.667 1.90 0.00 43.43 3.62
774 877 2.032528 CAAGGAGCAGCCGGTTCA 59.967 61.111 1.90 0.00 43.43 3.18
775 878 2.037136 CAAGGAGCAGCCGGTTCAG 61.037 63.158 1.90 0.00 43.43 3.02
776 879 3.909086 AAGGAGCAGCCGGTTCAGC 62.909 63.158 1.90 0.00 43.43 4.26
777 880 4.704833 GGAGCAGCCGGTTCAGCA 62.705 66.667 1.90 0.00 0.00 4.41
778 881 3.426568 GAGCAGCCGGTTCAGCAC 61.427 66.667 1.90 0.00 0.00 4.40
783 886 2.260434 GCCGGTTCAGCACGTAGA 59.740 61.111 1.90 0.00 0.00 2.59
789 892 2.541178 CGGTTCAGCACGTAGAGTATCC 60.541 54.545 0.00 0.00 33.66 2.59
901 1007 1.807742 CGTTCCAGCCGGATAAACAAA 59.192 47.619 5.05 0.00 42.41 2.83
921 1027 1.754234 AGCCCAATCAATCACCGGC 60.754 57.895 0.00 0.00 36.62 6.13
922 1028 3.110139 CCCAATCAATCACCGGCG 58.890 61.111 0.00 0.00 0.00 6.46
923 1029 2.480610 CCCAATCAATCACCGGCGG 61.481 63.158 27.06 27.06 0.00 6.13
924 1030 2.408835 CAATCAATCACCGGCGGC 59.591 61.111 28.71 0.00 0.00 6.53
925 1031 2.114670 CAATCAATCACCGGCGGCT 61.115 57.895 28.71 10.86 0.00 5.52
926 1032 1.819632 AATCAATCACCGGCGGCTC 60.820 57.895 28.71 0.00 0.00 4.70
975 1086 2.677875 GCCACCAGAAAGCCAGGG 60.678 66.667 0.00 0.00 0.00 4.45
1181 1329 4.099113 TGTTTCATCTGATCTGATCGCTCT 59.901 41.667 11.82 0.00 0.00 4.09
1182 1330 4.502171 TTCATCTGATCTGATCGCTCTC 57.498 45.455 11.82 0.00 0.00 3.20
1183 1331 3.753815 TCATCTGATCTGATCGCTCTCT 58.246 45.455 11.82 0.00 0.00 3.10
1184 1332 3.752747 TCATCTGATCTGATCGCTCTCTC 59.247 47.826 11.82 0.00 0.00 3.20
1185 1333 2.503331 TCTGATCTGATCGCTCTCTCC 58.497 52.381 12.65 0.00 0.00 3.71
1186 1334 2.158696 TCTGATCTGATCGCTCTCTCCA 60.159 50.000 12.65 0.00 0.00 3.86
1187 1335 2.227149 CTGATCTGATCGCTCTCTCCAG 59.773 54.545 12.65 0.00 0.00 3.86
1193 1341 0.257328 ATCGCTCTCTCCAGTCTCCA 59.743 55.000 0.00 0.00 0.00 3.86
1210 1358 1.146930 CACGGATGGAGTGGGATGG 59.853 63.158 0.00 0.00 36.06 3.51
1241 1389 6.591834 ACGGAGTATTTCTGTTCAGAAAGATG 59.408 38.462 25.10 16.79 42.93 2.90
1252 1400 7.939039 TCTGTTCAGAAAGATGAAACATAAGGT 59.061 33.333 0.00 0.00 40.72 3.50
1253 1401 7.874940 TGTTCAGAAAGATGAAACATAAGGTG 58.125 34.615 0.00 0.00 40.72 4.00
1254 1402 6.500684 TCAGAAAGATGAAACATAAGGTGC 57.499 37.500 0.00 0.00 0.00 5.01
1294 1443 1.829533 CCGATTGGATTGGGCCCAG 60.830 63.158 26.87 10.75 37.49 4.45
1307 1456 1.749258 GCCCAGTTCAATCGGGGTC 60.749 63.158 0.00 0.00 43.17 4.46
1323 1472 0.793250 GGTCTCTGCTTGTTCTTCGC 59.207 55.000 0.00 0.00 0.00 4.70
1377 1526 8.728596 ACCTTAGATGGTAGAGTAGCATATTT 57.271 34.615 0.00 0.00 45.96 1.40
1418 1567 5.944007 AGATAGTAAAACCCACCATTGTGTC 59.056 40.000 0.00 0.00 41.09 3.67
1419 1568 4.178956 AGTAAAACCCACCATTGTGTCT 57.821 40.909 0.00 0.00 41.09 3.41
1420 1569 4.542697 AGTAAAACCCACCATTGTGTCTT 58.457 39.130 0.00 0.00 41.09 3.01
1448 1597 2.671177 CGAGTGCGCAGAAACCAGG 61.671 63.158 12.22 0.00 0.00 4.45
1481 1630 3.103213 ATTGGGGCCTGGGCGTAT 61.103 61.111 14.63 4.47 43.06 3.06
1489 1638 1.580845 GCCTGGGCGTATCATGATGC 61.581 60.000 18.72 15.90 0.00 3.91
1510 1659 9.244292 TGATGCCTTAGATATACCACTAGTTAG 57.756 37.037 0.00 0.00 0.00 2.34
1511 1660 9.245481 GATGCCTTAGATATACCACTAGTTAGT 57.755 37.037 0.00 0.00 36.90 2.24
1513 1662 9.512588 TGCCTTAGATATACCACTAGTTAGTAC 57.487 37.037 4.95 0.00 34.13 2.73
1514 1663 9.737844 GCCTTAGATATACCACTAGTTAGTACT 57.262 37.037 0.00 0.00 38.44 2.73
1558 1707 3.780902 CTGTTACATACATCAGGCACGA 58.219 45.455 0.00 0.00 35.85 4.35
1570 1727 5.182950 ACATCAGGCACGAAATACATTTTGA 59.817 36.000 8.59 0.00 35.58 2.69
1611 1768 5.813717 CTGTTGTTACATACATCAGGCATG 58.186 41.667 0.00 0.00 45.01 4.06
1637 1794 4.700213 TGCTTTTAGGAAGATTGCACTACC 59.300 41.667 0.00 0.00 0.00 3.18
1638 1795 4.096532 GCTTTTAGGAAGATTGCACTACCC 59.903 45.833 0.00 0.00 0.00 3.69
1661 1818 0.905357 TTCCTCTGCTTCTACTGCCC 59.095 55.000 0.00 0.00 0.00 5.36
1697 1854 7.659390 TGTAAATGGATATCATAACATGTCGCA 59.341 33.333 0.00 0.00 34.44 5.10
1703 1860 2.837498 TCATAACATGTCGCAGGATGG 58.163 47.619 0.00 0.00 35.86 3.51
1704 1861 1.265095 CATAACATGTCGCAGGATGGC 59.735 52.381 0.00 0.00 35.86 4.40
1718 1875 0.520404 GATGGCGCTGCATAAGGATG 59.480 55.000 7.64 0.00 36.02 3.51
1723 1880 1.382522 CGCTGCATAAGGATGGTTGT 58.617 50.000 0.00 0.00 33.26 3.32
1802 1959 6.491403 ACTGCAAACATTCTTGATAGGAACTT 59.509 34.615 0.00 0.00 41.75 2.66
1806 1963 6.749923 AACATTCTTGATAGGAACTTGCTC 57.250 37.500 0.00 0.00 41.75 4.26
1813 1970 7.458397 TCTTGATAGGAACTTGCTCCTTTTTA 58.542 34.615 0.00 0.00 43.76 1.52
1842 1999 5.600696 CTCCACAAAAGGCAAATTTAGTGT 58.399 37.500 0.00 0.00 0.00 3.55
1928 2085 8.630917 GCTGTCTACCTTATACTGTTCTGATAA 58.369 37.037 0.00 0.00 0.00 1.75
1965 2122 6.837568 ACCTATTGATGCTTCTTGATTGGAAT 59.162 34.615 13.55 2.66 0.00 3.01
2017 2174 3.070748 GTTCTGCTCTCCCTCTGTTTTC 58.929 50.000 0.00 0.00 0.00 2.29
2022 2179 2.672760 GCTCTCCCTCTGTTTTCGTCTC 60.673 54.545 0.00 0.00 0.00 3.36
2043 2203 2.128035 GAGTGCTGTATGGCGTACATC 58.872 52.381 19.22 15.70 42.21 3.06
2100 2260 5.533903 AGCTGCCATTGAAATACCTCTAATG 59.466 40.000 0.00 0.00 0.00 1.90
2278 2438 2.731217 CACGCTTGCTTTTATATGGGC 58.269 47.619 0.00 0.00 0.00 5.36
2327 2490 7.786030 AGCTAATACTGCTATTCTCTGTTTGA 58.214 34.615 0.00 0.00 39.21 2.69
2337 2500 7.766278 TGCTATTCTCTGTTTGATTAGGTCTTC 59.234 37.037 0.00 0.00 0.00 2.87
2391 2554 2.547826 GTAATTGGTCCGCACCTAGAC 58.452 52.381 0.00 0.00 44.17 2.59
2448 2611 1.893137 GTGTGGTTTGGATCTTTCCCC 59.107 52.381 0.00 0.00 41.83 4.81
2460 2623 1.165270 CTTTCCCCACGTTGGATGTC 58.835 55.000 7.36 0.00 40.96 3.06
2475 2638 2.263077 GATGTCGAGTCGTTTGCATCT 58.737 47.619 21.96 5.53 32.48 2.90
2532 2695 0.741915 CCGAGAAGCACTACTCCCTC 59.258 60.000 0.00 0.00 0.00 4.30
2671 2834 3.817709 AGAAGTAAGCAGGATCAGAGC 57.182 47.619 0.00 0.00 0.00 4.09
2679 2842 1.579698 CAGGATCAGAGCCGTTCATG 58.420 55.000 0.00 0.00 0.00 3.07
2757 2924 4.346730 TGGATGCCATTTTCTGTGATTCT 58.653 39.130 0.00 0.00 0.00 2.40
2774 2942 7.033791 TGTGATTCTACGAGGTCTGTATTTTC 58.966 38.462 0.00 0.00 0.00 2.29
2815 2983 2.429058 CTCCTGTGCTGGTGCTGT 59.571 61.111 0.00 0.00 40.48 4.40
2835 3003 5.091261 TGTTGCCTGGTTGTAACATTTTT 57.909 34.783 0.00 0.00 0.00 1.94
2878 3046 1.772063 GATGATACCCCGCACGTTGC 61.772 60.000 0.00 0.00 40.69 4.17
2922 3090 9.705290 ATATTTCAATGAGGTTTTTGGTTACAC 57.295 29.630 0.00 0.00 0.00 2.90
3014 3182 8.916062 AGAATGGAATTTTACATGCATACATGA 58.084 29.630 12.99 0.00 46.84 3.07
3187 3637 4.697352 AGCTTGCTTGTGTAGTTATCCTTG 59.303 41.667 0.00 0.00 0.00 3.61
3188 3638 4.455877 GCTTGCTTGTGTAGTTATCCTTGT 59.544 41.667 0.00 0.00 0.00 3.16
3205 3655 1.205657 TGTTCAAACACTCGCTCGTC 58.794 50.000 0.00 0.00 33.17 4.20
3267 3717 3.103742 TGCAGACTTTTTGGACCCTTTT 58.896 40.909 0.00 0.00 0.00 2.27
3268 3718 3.517500 TGCAGACTTTTTGGACCCTTTTT 59.482 39.130 0.00 0.00 0.00 1.94
3290 3740 5.682943 TTAACTTGTACACATGCCAAGTC 57.317 39.130 16.27 0.00 45.89 3.01
3300 3750 3.763360 CACATGCCAAGTCCCTTGATTAA 59.237 43.478 5.57 0.00 43.42 1.40
3301 3751 3.763897 ACATGCCAAGTCCCTTGATTAAC 59.236 43.478 5.57 0.00 43.42 2.01
3338 3788 6.183360 GGTTGAGGTTCCTTGATGAATATTGG 60.183 42.308 0.00 0.00 0.00 3.16
3341 3791 6.603201 TGAGGTTCCTTGATGAATATTGGTTC 59.397 38.462 0.00 0.00 0.00 3.62
3366 3816 7.709613 TCTGTGAAACCTTTCTAGTCAGTAAAC 59.290 37.037 0.00 0.00 38.02 2.01
3367 3817 7.562135 TGTGAAACCTTTCTAGTCAGTAAACT 58.438 34.615 0.00 0.00 38.02 2.66
3368 3818 7.494625 TGTGAAACCTTTCTAGTCAGTAAACTG 59.505 37.037 3.64 3.64 40.22 3.16
3369 3819 6.482308 TGAAACCTTTCTAGTCAGTAAACTGC 59.518 38.462 5.21 1.46 39.51 4.40
3370 3820 5.546621 ACCTTTCTAGTCAGTAAACTGCA 57.453 39.130 5.21 0.00 43.46 4.41
3371 3821 5.925509 ACCTTTCTAGTCAGTAAACTGCAA 58.074 37.500 5.21 0.00 43.46 4.08
3372 3822 6.354130 ACCTTTCTAGTCAGTAAACTGCAAA 58.646 36.000 5.21 0.00 43.46 3.68
3373 3823 6.998673 ACCTTTCTAGTCAGTAAACTGCAAAT 59.001 34.615 5.21 0.00 43.46 2.32
3375 3825 7.173218 CCTTTCTAGTCAGTAAACTGCAAATGA 59.827 37.037 5.21 0.00 43.46 2.57
3377 3827 8.621532 TTCTAGTCAGTAAACTGCAAATGAAT 57.378 30.769 5.21 0.00 43.46 2.57
3378 3828 8.621532 TCTAGTCAGTAAACTGCAAATGAATT 57.378 30.769 5.21 0.00 43.46 2.17
3379 3829 9.719355 TCTAGTCAGTAAACTGCAAATGAATTA 57.281 29.630 5.21 0.00 43.46 1.40
3389 3839 9.635520 AAACTGCAAATGAATTATCTTCTGAAG 57.364 29.630 11.18 11.18 0.00 3.02
3392 3842 8.975410 TGCAAATGAATTATCTTCTGAAGTTG 57.025 30.769 16.43 11.06 0.00 3.16
3393 3843 8.030692 TGCAAATGAATTATCTTCTGAAGTTGG 58.969 33.333 16.43 1.06 0.00 3.77
3394 3844 8.246180 GCAAATGAATTATCTTCTGAAGTTGGA 58.754 33.333 16.43 0.00 0.00 3.53
3395 3845 9.784680 CAAATGAATTATCTTCTGAAGTTGGAG 57.215 33.333 16.43 0.00 0.00 3.86
3396 3846 9.745018 AAATGAATTATCTTCTGAAGTTGGAGA 57.255 29.630 16.43 0.00 0.00 3.71
3397 3847 9.917887 AATGAATTATCTTCTGAAGTTGGAGAT 57.082 29.630 16.43 5.10 0.00 2.75
3398 3848 8.954950 TGAATTATCTTCTGAAGTTGGAGATC 57.045 34.615 16.43 8.66 0.00 2.75
3399 3849 8.542926 TGAATTATCTTCTGAAGTTGGAGATCA 58.457 33.333 16.43 10.68 0.00 2.92
3400 3850 9.558396 GAATTATCTTCTGAAGTTGGAGATCAT 57.442 33.333 16.43 3.06 0.00 2.45
3401 3851 9.558396 AATTATCTTCTGAAGTTGGAGATCATC 57.442 33.333 16.43 0.00 0.00 2.92
3402 3852 5.003692 TCTTCTGAAGTTGGAGATCATCG 57.996 43.478 16.43 0.00 0.00 3.84
3403 3853 4.706962 TCTTCTGAAGTTGGAGATCATCGA 59.293 41.667 16.43 0.00 0.00 3.59
3404 3854 4.645762 TCTGAAGTTGGAGATCATCGAG 57.354 45.455 0.00 0.00 0.00 4.04
3405 3855 4.019858 TCTGAAGTTGGAGATCATCGAGT 58.980 43.478 0.00 0.00 0.00 4.18
3406 3856 4.111198 CTGAAGTTGGAGATCATCGAGTG 58.889 47.826 0.00 0.00 0.00 3.51
3407 3857 2.593346 AGTTGGAGATCATCGAGTGC 57.407 50.000 0.00 0.00 0.00 4.40
3408 3858 1.202348 AGTTGGAGATCATCGAGTGCG 60.202 52.381 0.00 0.00 39.35 5.34
3409 3859 0.528466 TTGGAGATCATCGAGTGCGC 60.528 55.000 0.00 0.00 37.46 6.09
3410 3860 2.013483 GGAGATCATCGAGTGCGCG 61.013 63.158 0.00 0.00 37.46 6.86
3411 3861 2.013483 GAGATCATCGAGTGCGCGG 61.013 63.158 8.83 0.00 37.46 6.46
3412 3862 2.026157 GATCATCGAGTGCGCGGA 59.974 61.111 8.83 0.00 37.46 5.54
3413 3863 1.372251 GATCATCGAGTGCGCGGAT 60.372 57.895 8.83 0.00 37.46 4.18
3414 3864 0.941463 GATCATCGAGTGCGCGGATT 60.941 55.000 8.83 0.00 37.46 3.01
3415 3865 0.530650 ATCATCGAGTGCGCGGATTT 60.531 50.000 8.83 0.00 37.46 2.17
3416 3866 1.145759 TCATCGAGTGCGCGGATTTC 61.146 55.000 8.83 6.63 37.46 2.17
3417 3867 2.230940 ATCGAGTGCGCGGATTTCG 61.231 57.895 24.07 24.07 42.76 3.46
3418 3868 3.913573 CGAGTGCGCGGATTTCGG 61.914 66.667 22.93 9.76 39.69 4.30
3424 3874 2.279918 CGCGGATTTCGGGGTAGG 60.280 66.667 0.00 0.00 46.25 3.18
3425 3875 2.110420 GCGGATTTCGGGGTAGGG 59.890 66.667 0.00 0.00 39.69 3.53
3426 3876 2.437396 GCGGATTTCGGGGTAGGGA 61.437 63.158 0.00 0.00 39.69 4.20
3427 3877 1.765597 GCGGATTTCGGGGTAGGGAT 61.766 60.000 0.00 0.00 39.69 3.85
3428 3878 0.034896 CGGATTTCGGGGTAGGGATG 59.965 60.000 0.00 0.00 34.75 3.51
3429 3879 0.250770 GGATTTCGGGGTAGGGATGC 60.251 60.000 0.00 0.00 0.00 3.91
3430 3880 0.250770 GATTTCGGGGTAGGGATGCC 60.251 60.000 0.00 0.00 0.00 4.40
3431 3881 0.697854 ATTTCGGGGTAGGGATGCCT 60.698 55.000 11.82 11.82 0.00 4.75
3432 3882 0.917333 TTTCGGGGTAGGGATGCCTT 60.917 55.000 12.53 0.00 0.00 4.35
3433 3883 0.030909 TTCGGGGTAGGGATGCCTTA 60.031 55.000 12.53 0.00 0.00 2.69
3434 3884 0.761702 TCGGGGTAGGGATGCCTTAC 60.762 60.000 12.53 7.67 35.67 2.34
3435 3885 1.052124 CGGGGTAGGGATGCCTTACA 61.052 60.000 12.53 0.00 37.75 2.41
3436 3886 1.446016 GGGGTAGGGATGCCTTACAT 58.554 55.000 12.53 0.00 43.54 2.29
3484 4247 8.958119 TTTCTGGTTGTCATTGGATATAGTAC 57.042 34.615 0.00 0.00 0.00 2.73
3486 4249 7.726216 TCTGGTTGTCATTGGATATAGTACAG 58.274 38.462 0.00 0.00 0.00 2.74
3487 4250 6.288294 TGGTTGTCATTGGATATAGTACAGC 58.712 40.000 0.00 0.00 0.00 4.40
3491 4254 6.925211 TGTCATTGGATATAGTACAGCTAGC 58.075 40.000 6.62 6.62 32.45 3.42
3496 4259 9.743057 CATTGGATATAGTACAGCTAGCTTATC 57.257 37.037 16.46 17.37 32.45 1.75
3516 4372 4.305539 TCATGATCAACTTGATGGTGGT 57.694 40.909 9.08 0.00 37.20 4.16
3523 4379 3.573538 TCAACTTGATGGTGGTTTGATGG 59.426 43.478 0.00 0.00 33.29 3.51
3526 4382 1.921982 TGATGGTGGTTTGATGGTGG 58.078 50.000 0.00 0.00 0.00 4.61
3545 4401 4.290969 GTGGGAAAGAAAAAGAAGAAGCG 58.709 43.478 0.00 0.00 0.00 4.68
3641 4497 5.047306 ACCAAACCCTATTTCTTAAGCAAGC 60.047 40.000 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.606096 GGGGTTGTTTGGTACCATGC 59.394 55.000 17.17 12.11 36.10 4.06
1 2 2.302587 AGGGGTTGTTTGGTACCATG 57.697 50.000 17.17 0.00 36.10 3.66
2 3 4.472690 TTTAGGGGTTGTTTGGTACCAT 57.527 40.909 17.17 0.00 36.10 3.55
3 4 3.967467 TTTAGGGGTTGTTTGGTACCA 57.033 42.857 11.60 11.60 36.10 3.25
4 5 8.592529 TTAATATTTAGGGGTTGTTTGGTACC 57.407 34.615 4.43 4.43 0.00 3.34
44 45 9.979578 TGCATGTTGTAGTTAAAAATCTTGATT 57.020 25.926 0.00 0.00 0.00 2.57
45 46 9.410556 GTGCATGTTGTAGTTAAAAATCTTGAT 57.589 29.630 0.00 0.00 0.00 2.57
46 47 8.629158 AGTGCATGTTGTAGTTAAAAATCTTGA 58.371 29.630 0.00 0.00 0.00 3.02
47 48 8.801715 AGTGCATGTTGTAGTTAAAAATCTTG 57.198 30.769 0.00 0.00 0.00 3.02
48 49 9.816354 AAAGTGCATGTTGTAGTTAAAAATCTT 57.184 25.926 0.00 0.00 0.00 2.40
49 50 9.816354 AAAAGTGCATGTTGTAGTTAAAAATCT 57.184 25.926 0.00 0.00 0.00 2.40
91 92 9.363401 GGGAGTATTTTATAAGGTGCCTTAATT 57.637 33.333 13.91 2.65 41.21 1.40
92 93 8.733808 AGGGAGTATTTTATAAGGTGCCTTAAT 58.266 33.333 13.91 8.01 41.21 1.40
93 94 8.109560 AGGGAGTATTTTATAAGGTGCCTTAA 57.890 34.615 13.91 1.15 41.21 1.85
94 95 7.202158 GGAGGGAGTATTTTATAAGGTGCCTTA 60.202 40.741 12.51 12.51 41.95 2.69
95 96 6.410504 GGAGGGAGTATTTTATAAGGTGCCTT 60.411 42.308 8.65 8.65 39.83 4.35
96 97 5.073280 GGAGGGAGTATTTTATAAGGTGCCT 59.927 44.000 0.00 0.00 0.00 4.75
97 98 5.314529 GGAGGGAGTATTTTATAAGGTGCC 58.685 45.833 0.00 0.00 0.00 5.01
98 99 4.995487 CGGAGGGAGTATTTTATAAGGTGC 59.005 45.833 0.00 0.00 0.00 5.01
99 100 6.170846 ACGGAGGGAGTATTTTATAAGGTG 57.829 41.667 0.00 0.00 0.00 4.00
100 101 6.183361 GGAACGGAGGGAGTATTTTATAAGGT 60.183 42.308 0.00 0.00 0.00 3.50
101 102 6.042897 AGGAACGGAGGGAGTATTTTATAAGG 59.957 42.308 0.00 0.00 0.00 2.69
102 103 7.063934 AGGAACGGAGGGAGTATTTTATAAG 57.936 40.000 0.00 0.00 0.00 1.73
103 104 8.551682 TTAGGAACGGAGGGAGTATTTTATAA 57.448 34.615 0.00 0.00 0.00 0.98
104 105 8.551682 TTTAGGAACGGAGGGAGTATTTTATA 57.448 34.615 0.00 0.00 0.00 0.98
105 106 7.441903 TTTAGGAACGGAGGGAGTATTTTAT 57.558 36.000 0.00 0.00 0.00 1.40
106 107 6.872585 TTTAGGAACGGAGGGAGTATTTTA 57.127 37.500 0.00 0.00 0.00 1.52
107 108 5.767277 TTTAGGAACGGAGGGAGTATTTT 57.233 39.130 0.00 0.00 0.00 1.82
108 109 5.191124 ACATTTAGGAACGGAGGGAGTATTT 59.809 40.000 0.00 0.00 0.00 1.40
109 110 4.720273 ACATTTAGGAACGGAGGGAGTATT 59.280 41.667 0.00 0.00 0.00 1.89
110 111 4.296056 ACATTTAGGAACGGAGGGAGTAT 58.704 43.478 0.00 0.00 0.00 2.12
111 112 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
112 113 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
113 114 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
114 115 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
115 116 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
116 117 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
117 118 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
118 119 9.211485 CTAAAAAGACTTACATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
119 120 9.211485 TCTAAAAAGACTTACATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
191 192 9.846248 GAGCAAAAATAAATGAATGTACACTCT 57.154 29.630 5.83 0.00 0.00 3.24
192 193 9.076596 GGAGCAAAAATAAATGAATGTACACTC 57.923 33.333 0.00 0.00 0.00 3.51
193 194 8.584157 TGGAGCAAAAATAAATGAATGTACACT 58.416 29.630 0.00 0.00 0.00 3.55
194 195 8.755696 TGGAGCAAAAATAAATGAATGTACAC 57.244 30.769 0.00 0.00 0.00 2.90
205 206 9.461312 AGTGACTACATATGGAGCAAAAATAAA 57.539 29.630 15.30 0.00 0.00 1.40
206 207 9.461312 AAGTGACTACATATGGAGCAAAAATAA 57.539 29.630 15.30 0.00 0.00 1.40
207 208 8.892723 CAAGTGACTACATATGGAGCAAAAATA 58.107 33.333 15.30 0.00 0.00 1.40
208 209 7.148018 CCAAGTGACTACATATGGAGCAAAAAT 60.148 37.037 15.30 0.00 37.02 1.82
209 210 6.150976 CCAAGTGACTACATATGGAGCAAAAA 59.849 38.462 15.30 0.00 37.02 1.94
210 211 5.647658 CCAAGTGACTACATATGGAGCAAAA 59.352 40.000 15.30 0.00 37.02 2.44
211 212 5.185454 CCAAGTGACTACATATGGAGCAAA 58.815 41.667 15.30 0.00 37.02 3.68
212 213 4.225042 ACCAAGTGACTACATATGGAGCAA 59.775 41.667 15.30 0.16 37.74 3.91
213 214 3.774766 ACCAAGTGACTACATATGGAGCA 59.225 43.478 15.30 10.95 37.74 4.26
214 215 4.122776 CACCAAGTGACTACATATGGAGC 58.877 47.826 15.30 8.47 37.74 4.70
215 216 4.405680 TCCACCAAGTGACTACATATGGAG 59.594 45.833 13.77 13.77 37.74 3.86
216 217 4.358214 TCCACCAAGTGACTACATATGGA 58.642 43.478 7.80 0.00 37.74 3.41
217 218 4.162320 ACTCCACCAAGTGACTACATATGG 59.838 45.833 7.80 0.00 39.14 2.74
218 219 5.344743 ACTCCACCAAGTGACTACATATG 57.655 43.478 0.00 0.00 35.23 1.78
219 220 6.213600 AGAAACTCCACCAAGTGACTACATAT 59.786 38.462 0.00 0.00 35.23 1.78
220 221 5.542635 AGAAACTCCACCAAGTGACTACATA 59.457 40.000 0.00 0.00 35.23 2.29
221 222 4.348168 AGAAACTCCACCAAGTGACTACAT 59.652 41.667 0.00 0.00 35.23 2.29
222 223 3.709653 AGAAACTCCACCAAGTGACTACA 59.290 43.478 0.00 0.00 35.23 2.74
223 224 4.338379 AGAAACTCCACCAAGTGACTAC 57.662 45.455 0.00 0.00 35.23 2.73
224 225 5.391256 TCTAGAAACTCCACCAAGTGACTA 58.609 41.667 0.00 0.00 35.23 2.59
225 226 4.223953 TCTAGAAACTCCACCAAGTGACT 58.776 43.478 0.00 0.00 35.23 3.41
226 227 4.602340 TCTAGAAACTCCACCAAGTGAC 57.398 45.455 0.00 0.00 35.23 3.67
227 228 5.365605 TCTTTCTAGAAACTCCACCAAGTGA 59.634 40.000 13.99 2.94 35.23 3.41
228 229 5.467063 GTCTTTCTAGAAACTCCACCAAGTG 59.533 44.000 13.99 0.60 30.65 3.16
229 230 5.367060 AGTCTTTCTAGAAACTCCACCAAGT 59.633 40.000 13.99 0.00 30.65 3.16
230 231 5.859495 AGTCTTTCTAGAAACTCCACCAAG 58.141 41.667 13.99 1.49 30.65 3.61
231 232 5.888982 AGTCTTTCTAGAAACTCCACCAA 57.111 39.130 13.99 0.00 30.65 3.67
232 233 5.888982 AAGTCTTTCTAGAAACTCCACCA 57.111 39.130 13.99 0.00 30.65 4.17
245 246 9.198475 TCTCCGTTCCTAAATATAAGTCTTTCT 57.802 33.333 0.00 0.00 0.00 2.52
246 247 9.465985 CTCTCCGTTCCTAAATATAAGTCTTTC 57.534 37.037 0.00 0.00 0.00 2.62
247 248 9.198475 TCTCTCCGTTCCTAAATATAAGTCTTT 57.802 33.333 0.00 0.00 0.00 2.52
248 249 8.763984 TCTCTCCGTTCCTAAATATAAGTCTT 57.236 34.615 0.00 0.00 0.00 3.01
249 250 8.000127 ACTCTCTCCGTTCCTAAATATAAGTCT 59.000 37.037 0.00 0.00 0.00 3.24
250 251 8.077386 CACTCTCTCCGTTCCTAAATATAAGTC 58.923 40.741 0.00 0.00 0.00 3.01
251 252 7.560626 ACACTCTCTCCGTTCCTAAATATAAGT 59.439 37.037 0.00 0.00 0.00 2.24
252 253 7.942990 ACACTCTCTCCGTTCCTAAATATAAG 58.057 38.462 0.00 0.00 0.00 1.73
253 254 7.893124 ACACTCTCTCCGTTCCTAAATATAA 57.107 36.000 0.00 0.00 0.00 0.98
255 256 9.584008 TTATACACTCTCTCCGTTCCTAAATAT 57.416 33.333 0.00 0.00 0.00 1.28
256 257 8.985315 TTATACACTCTCTCCGTTCCTAAATA 57.015 34.615 0.00 0.00 0.00 1.40
257 258 7.893124 TTATACACTCTCTCCGTTCCTAAAT 57.107 36.000 0.00 0.00 0.00 1.40
258 259 7.707624 TTTATACACTCTCTCCGTTCCTAAA 57.292 36.000 0.00 0.00 0.00 1.85
259 260 7.893124 ATTTATACACTCTCTCCGTTCCTAA 57.107 36.000 0.00 0.00 0.00 2.69
260 261 7.994911 TGTATTTATACACTCTCTCCGTTCCTA 59.005 37.037 0.00 0.00 38.28 2.94
261 262 6.832384 TGTATTTATACACTCTCTCCGTTCCT 59.168 38.462 0.00 0.00 38.28 3.36
262 263 7.035840 TGTATTTATACACTCTCTCCGTTCC 57.964 40.000 0.00 0.00 38.28 3.62
296 297 9.283768 CCTTGTAAATAAAAATCAGGGCTTTTT 57.716 29.630 1.38 1.38 38.80 1.94
360 362 5.918426 TCCAAAATCTTCATAAGCATGCA 57.082 34.783 21.98 0.00 31.73 3.96
361 363 5.924825 GGATCCAAAATCTTCATAAGCATGC 59.075 40.000 10.51 10.51 31.73 4.06
364 366 6.127366 GGTTGGATCCAAAATCTTCATAAGCA 60.127 38.462 28.64 0.00 37.70 3.91
365 367 6.127366 TGGTTGGATCCAAAATCTTCATAAGC 60.127 38.462 28.64 12.30 37.70 3.09
394 396 4.473520 CGTGCTTGGATCGGGCCT 62.474 66.667 0.84 0.00 0.00 5.19
395 397 4.467084 TCGTGCTTGGATCGGGCC 62.467 66.667 0.00 0.00 0.00 5.80
396 398 3.195698 GTCGTGCTTGGATCGGGC 61.196 66.667 0.00 0.00 0.00 6.13
408 410 2.828877 TGTGGAGTAAAACTGGTCGTG 58.171 47.619 0.00 0.00 0.00 4.35
415 417 4.330944 TGACACGATGTGGAGTAAAACT 57.669 40.909 1.64 0.00 37.94 2.66
424 426 1.135603 CCAAAGCATGACACGATGTGG 60.136 52.381 0.00 0.00 37.94 4.17
426 428 1.806542 GTCCAAAGCATGACACGATGT 59.193 47.619 0.00 0.00 0.00 3.06
429 431 0.396435 AGGTCCAAAGCATGACACGA 59.604 50.000 0.00 0.00 0.00 4.35
435 437 1.086696 CACGGTAGGTCCAAAGCATG 58.913 55.000 0.00 0.00 35.57 4.06
436 438 0.676782 GCACGGTAGGTCCAAAGCAT 60.677 55.000 0.00 0.00 35.57 3.79
478 481 9.779951 TCCCTTCTTACTATTAAACTTAGGACT 57.220 33.333 0.00 0.00 0.00 3.85
494 497 6.116126 ACTCAACATAGCATTCCCTTCTTAC 58.884 40.000 0.00 0.00 0.00 2.34
521 524 1.954362 TTGTGTTGTTGGGTGCCTGC 61.954 55.000 0.00 0.00 0.00 4.85
526 529 3.069443 AGCCTTATTTGTGTTGTTGGGTG 59.931 43.478 0.00 0.00 0.00 4.61
527 530 3.304829 AGCCTTATTTGTGTTGTTGGGT 58.695 40.909 0.00 0.00 0.00 4.51
536 539 9.705290 ACAGGTTTTTATAAAGCCTTATTTGTG 57.295 29.630 16.23 9.74 41.53 3.33
561 564 5.163982 CCTTAGCAAACGTTCACTAGCTAAC 60.164 44.000 19.11 0.00 39.01 2.34
565 568 3.323243 TCCTTAGCAAACGTTCACTAGC 58.677 45.455 0.00 1.33 0.00 3.42
566 569 3.927142 CCTCCTTAGCAAACGTTCACTAG 59.073 47.826 0.00 0.00 0.00 2.57
607 710 9.196139 CCCCCTATAACTAAAATTGTCATGAAA 57.804 33.333 0.00 0.00 0.00 2.69
608 711 8.340757 ACCCCCTATAACTAAAATTGTCATGAA 58.659 33.333 0.00 0.00 0.00 2.57
609 712 7.777910 CACCCCCTATAACTAAAATTGTCATGA 59.222 37.037 0.00 0.00 0.00 3.07
610 713 7.777910 TCACCCCCTATAACTAAAATTGTCATG 59.222 37.037 0.00 0.00 0.00 3.07
611 714 7.778382 GTCACCCCCTATAACTAAAATTGTCAT 59.222 37.037 0.00 0.00 0.00 3.06
612 715 7.114095 GTCACCCCCTATAACTAAAATTGTCA 58.886 38.462 0.00 0.00 0.00 3.58
613 716 7.114095 TGTCACCCCCTATAACTAAAATTGTC 58.886 38.462 0.00 0.00 0.00 3.18
614 717 7.034967 TGTCACCCCCTATAACTAAAATTGT 57.965 36.000 0.00 0.00 0.00 2.71
615 718 7.614192 AGTTGTCACCCCCTATAACTAAAATTG 59.386 37.037 0.00 0.00 0.00 2.32
616 719 7.705700 AGTTGTCACCCCCTATAACTAAAATT 58.294 34.615 0.00 0.00 0.00 1.82
617 720 7.280044 AGTTGTCACCCCCTATAACTAAAAT 57.720 36.000 0.00 0.00 0.00 1.82
618 721 6.707273 AGTTGTCACCCCCTATAACTAAAA 57.293 37.500 0.00 0.00 0.00 1.52
619 722 6.707273 AAGTTGTCACCCCCTATAACTAAA 57.293 37.500 0.00 0.00 0.00 1.85
620 723 6.707273 AAAGTTGTCACCCCCTATAACTAA 57.293 37.500 0.00 0.00 0.00 2.24
621 724 6.707273 AAAAGTTGTCACCCCCTATAACTA 57.293 37.500 0.00 0.00 0.00 2.24
622 725 5.594199 AAAAGTTGTCACCCCCTATAACT 57.406 39.130 0.00 0.00 0.00 2.24
623 726 5.771165 TGAAAAAGTTGTCACCCCCTATAAC 59.229 40.000 0.00 0.00 0.00 1.89
624 727 5.954757 TGAAAAAGTTGTCACCCCCTATAA 58.045 37.500 0.00 0.00 0.00 0.98
625 728 5.515886 CCTGAAAAAGTTGTCACCCCCTATA 60.516 44.000 0.00 0.00 0.00 1.31
626 729 4.407365 CTGAAAAAGTTGTCACCCCCTAT 58.593 43.478 0.00 0.00 0.00 2.57
627 730 3.435890 CCTGAAAAAGTTGTCACCCCCTA 60.436 47.826 0.00 0.00 0.00 3.53
628 731 2.666317 CTGAAAAAGTTGTCACCCCCT 58.334 47.619 0.00 0.00 0.00 4.79
629 732 1.686587 CCTGAAAAAGTTGTCACCCCC 59.313 52.381 0.00 0.00 0.00 5.40
630 733 1.068588 GCCTGAAAAAGTTGTCACCCC 59.931 52.381 0.00 0.00 0.00 4.95
631 734 2.031870 AGCCTGAAAAAGTTGTCACCC 58.968 47.619 0.00 0.00 0.00 4.61
632 735 3.304726 GCTAGCCTGAAAAAGTTGTCACC 60.305 47.826 2.29 0.00 0.00 4.02
633 736 3.315191 TGCTAGCCTGAAAAAGTTGTCAC 59.685 43.478 13.29 0.00 0.00 3.67
634 737 3.550820 TGCTAGCCTGAAAAAGTTGTCA 58.449 40.909 13.29 0.00 0.00 3.58
635 738 4.479619 CATGCTAGCCTGAAAAAGTTGTC 58.520 43.478 14.21 0.00 0.00 3.18
636 739 3.305608 GCATGCTAGCCTGAAAAAGTTGT 60.306 43.478 22.41 0.00 0.00 3.32
637 740 3.248266 GCATGCTAGCCTGAAAAAGTTG 58.752 45.455 22.41 2.06 0.00 3.16
638 741 2.892852 TGCATGCTAGCCTGAAAAAGTT 59.107 40.909 22.41 0.00 0.00 2.66
639 742 2.517959 TGCATGCTAGCCTGAAAAAGT 58.482 42.857 22.41 0.00 0.00 2.66
640 743 3.581024 TTGCATGCTAGCCTGAAAAAG 57.419 42.857 22.41 0.00 0.00 2.27
641 744 4.497300 GAATTGCATGCTAGCCTGAAAAA 58.503 39.130 22.41 13.17 0.00 1.94
642 745 3.119029 GGAATTGCATGCTAGCCTGAAAA 60.119 43.478 22.41 15.34 0.00 2.29
643 746 2.428171 GGAATTGCATGCTAGCCTGAAA 59.572 45.455 22.41 18.68 0.00 2.69
644 747 2.026641 GGAATTGCATGCTAGCCTGAA 58.973 47.619 22.41 10.45 0.00 3.02
645 748 1.213678 AGGAATTGCATGCTAGCCTGA 59.786 47.619 22.41 4.15 0.00 3.86
646 749 1.688772 AGGAATTGCATGCTAGCCTG 58.311 50.000 20.33 14.23 0.00 4.85
647 750 2.449137 AAGGAATTGCATGCTAGCCT 57.551 45.000 20.33 18.18 0.00 4.58
648 751 2.692041 AGAAAGGAATTGCATGCTAGCC 59.308 45.455 20.33 16.25 0.00 3.93
649 752 4.336433 TGTAGAAAGGAATTGCATGCTAGC 59.664 41.667 20.33 8.10 0.00 3.42
650 753 5.819379 TCTGTAGAAAGGAATTGCATGCTAG 59.181 40.000 20.33 0.00 0.00 3.42
651 754 5.744171 TCTGTAGAAAGGAATTGCATGCTA 58.256 37.500 20.33 12.49 0.00 3.49
652 755 4.592942 TCTGTAGAAAGGAATTGCATGCT 58.407 39.130 20.33 0.00 0.00 3.79
653 756 4.970662 TCTGTAGAAAGGAATTGCATGC 57.029 40.909 11.82 11.82 0.00 4.06
654 757 5.678107 GCCTTCTGTAGAAAGGAATTGCATG 60.678 44.000 6.10 0.00 33.07 4.06
655 758 4.400567 GCCTTCTGTAGAAAGGAATTGCAT 59.599 41.667 6.10 0.00 33.07 3.96
656 759 3.758554 GCCTTCTGTAGAAAGGAATTGCA 59.241 43.478 6.10 0.00 33.07 4.08
657 760 3.758554 TGCCTTCTGTAGAAAGGAATTGC 59.241 43.478 6.10 0.00 33.07 3.56
658 761 7.630242 TTATGCCTTCTGTAGAAAGGAATTG 57.370 36.000 6.10 0.00 33.07 2.32
659 762 8.523658 GTTTTATGCCTTCTGTAGAAAGGAATT 58.476 33.333 6.10 0.00 33.07 2.17
660 763 7.890655 AGTTTTATGCCTTCTGTAGAAAGGAAT 59.109 33.333 6.10 3.54 33.07 3.01
661 764 7.174946 CAGTTTTATGCCTTCTGTAGAAAGGAA 59.825 37.037 6.10 0.00 33.07 3.36
662 765 6.655003 CAGTTTTATGCCTTCTGTAGAAAGGA 59.345 38.462 6.10 1.77 33.07 3.36
663 766 6.623767 GCAGTTTTATGCCTTCTGTAGAAAGG 60.624 42.308 0.00 0.00 40.43 3.11
664 767 6.317857 GCAGTTTTATGCCTTCTGTAGAAAG 58.682 40.000 0.00 0.00 40.43 2.62
665 768 6.254281 GCAGTTTTATGCCTTCTGTAGAAA 57.746 37.500 0.00 0.00 40.43 2.52
666 769 5.880054 GCAGTTTTATGCCTTCTGTAGAA 57.120 39.130 0.00 0.00 40.43 2.10
677 780 3.832276 TCAAACGATGGCAGTTTTATGC 58.168 40.909 2.43 0.00 45.74 3.14
678 781 5.883661 AGATCAAACGATGGCAGTTTTATG 58.116 37.500 2.43 0.00 39.50 1.90
679 782 5.220662 CGAGATCAAACGATGGCAGTTTTAT 60.221 40.000 2.43 1.29 39.50 1.40
680 783 4.092821 CGAGATCAAACGATGGCAGTTTTA 59.907 41.667 2.43 0.00 39.50 1.52
681 784 3.120199 CGAGATCAAACGATGGCAGTTTT 60.120 43.478 2.43 0.00 39.50 2.43
682 785 2.416547 CGAGATCAAACGATGGCAGTTT 59.583 45.455 0.00 0.00 41.90 2.66
683 786 2.002586 CGAGATCAAACGATGGCAGTT 58.997 47.619 0.00 0.00 0.00 3.16
684 787 1.204704 TCGAGATCAAACGATGGCAGT 59.795 47.619 0.00 0.00 33.62 4.40
685 788 1.926561 TCGAGATCAAACGATGGCAG 58.073 50.000 0.00 0.00 33.62 4.85
686 789 2.159114 TGATCGAGATCAAACGATGGCA 60.159 45.455 20.75 13.48 46.71 4.92
687 790 2.473816 TGATCGAGATCAAACGATGGC 58.526 47.619 20.75 11.72 46.71 4.40
696 799 1.204704 ACAGCCGTTTGATCGAGATCA 59.795 47.619 11.37 11.37 45.30 2.92
697 800 1.590238 CACAGCCGTTTGATCGAGATC 59.410 52.381 6.16 6.16 38.29 2.75
698 801 1.204704 TCACAGCCGTTTGATCGAGAT 59.795 47.619 0.00 0.00 0.00 2.75
699 802 0.601057 TCACAGCCGTTTGATCGAGA 59.399 50.000 0.00 0.00 0.00 4.04
700 803 0.994995 CTCACAGCCGTTTGATCGAG 59.005 55.000 0.00 0.00 0.00 4.04
701 804 0.389817 CCTCACAGCCGTTTGATCGA 60.390 55.000 0.00 0.00 0.00 3.59
702 805 1.361668 CCCTCACAGCCGTTTGATCG 61.362 60.000 0.00 0.00 0.00 3.69
703 806 1.648467 GCCCTCACAGCCGTTTGATC 61.648 60.000 0.00 0.00 0.00 2.92
704 807 1.675641 GCCCTCACAGCCGTTTGAT 60.676 57.895 0.00 0.00 0.00 2.57
705 808 2.281484 GCCCTCACAGCCGTTTGA 60.281 61.111 0.00 0.00 0.00 2.69
706 809 3.726517 CGCCCTCACAGCCGTTTG 61.727 66.667 0.00 0.00 0.00 2.93
720 823 3.491652 GAACTTCCAGCGAGCGCC 61.492 66.667 11.66 0.00 43.17 6.53
721 824 3.491652 GGAACTTCCAGCGAGCGC 61.492 66.667 6.78 6.78 36.28 5.92
722 825 2.815647 GGGAACTTCCAGCGAGCG 60.816 66.667 10.11 0.00 38.64 5.03
723 826 1.448717 GAGGGAACTTCCAGCGAGC 60.449 63.158 10.11 0.00 44.43 5.03
724 827 1.219393 GGAGGGAACTTCCAGCGAG 59.781 63.158 10.11 0.00 44.43 5.03
725 828 3.388841 GGAGGGAACTTCCAGCGA 58.611 61.111 10.11 0.00 44.43 4.93
731 834 1.677552 TTCGCTGGGAGGGAACTTC 59.322 57.895 0.00 0.00 41.41 3.01
732 835 3.900888 TTCGCTGGGAGGGAACTT 58.099 55.556 0.00 0.00 41.41 2.66
735 838 2.444700 GAACGTTCGCTGGGAGGGAA 62.445 60.000 13.36 0.00 43.59 3.97
736 839 2.920912 AACGTTCGCTGGGAGGGA 60.921 61.111 0.00 0.00 35.23 4.20
737 840 2.434359 GAACGTTCGCTGGGAGGG 60.434 66.667 13.36 0.00 0.00 4.30
738 841 2.809601 CGAACGTTCGCTGGGAGG 60.810 66.667 34.54 9.32 44.26 4.30
747 850 1.901650 CTGCTCCTTGGCGAACGTTC 61.902 60.000 18.47 18.47 34.52 3.95
748 851 1.961277 CTGCTCCTTGGCGAACGTT 60.961 57.895 0.00 0.00 34.52 3.99
749 852 2.357517 CTGCTCCTTGGCGAACGT 60.358 61.111 0.00 0.00 34.52 3.99
750 853 3.793144 GCTGCTCCTTGGCGAACG 61.793 66.667 0.00 0.00 34.52 3.95
751 854 3.435186 GGCTGCTCCTTGGCGAAC 61.435 66.667 0.00 0.00 34.52 3.95
756 859 2.747855 GAACCGGCTGCTCCTTGG 60.748 66.667 0.00 0.00 0.00 3.61
757 860 2.032528 TGAACCGGCTGCTCCTTG 59.967 61.111 0.00 0.00 0.00 3.61
758 861 2.348998 CTGAACCGGCTGCTCCTT 59.651 61.111 0.00 0.00 0.00 3.36
759 862 4.400961 GCTGAACCGGCTGCTCCT 62.401 66.667 0.00 0.00 32.24 3.69
760 863 4.704833 TGCTGAACCGGCTGCTCC 62.705 66.667 0.00 0.00 36.58 4.70
761 864 3.426568 GTGCTGAACCGGCTGCTC 61.427 66.667 0.00 0.00 36.58 4.26
764 867 2.048597 TACGTGCTGAACCGGCTG 60.049 61.111 0.00 0.00 36.58 4.85
765 868 2.214181 CTCTACGTGCTGAACCGGCT 62.214 60.000 0.00 0.00 36.58 5.52
766 869 1.805945 CTCTACGTGCTGAACCGGC 60.806 63.158 0.00 0.00 36.10 6.13
767 870 0.806868 TACTCTACGTGCTGAACCGG 59.193 55.000 0.00 0.00 0.00 5.28
768 871 2.541178 GGATACTCTACGTGCTGAACCG 60.541 54.545 0.00 0.00 0.00 4.44
769 872 2.426024 TGGATACTCTACGTGCTGAACC 59.574 50.000 0.00 0.00 37.61 3.62
770 873 3.777465 TGGATACTCTACGTGCTGAAC 57.223 47.619 0.00 0.00 37.61 3.18
771 874 4.794278 TTTGGATACTCTACGTGCTGAA 57.206 40.909 0.00 0.00 37.61 3.02
772 875 4.497507 CGATTTGGATACTCTACGTGCTGA 60.498 45.833 0.00 0.00 37.61 4.26
773 876 3.731216 CGATTTGGATACTCTACGTGCTG 59.269 47.826 0.00 0.00 37.61 4.41
774 877 3.243434 CCGATTTGGATACTCTACGTGCT 60.243 47.826 0.00 0.00 42.00 4.40
775 878 3.050619 CCGATTTGGATACTCTACGTGC 58.949 50.000 0.00 0.00 42.00 5.34
776 879 3.050619 GCCGATTTGGATACTCTACGTG 58.949 50.000 0.00 0.00 42.00 4.49
777 880 2.957006 AGCCGATTTGGATACTCTACGT 59.043 45.455 0.00 0.00 42.00 3.57
778 881 3.004419 TCAGCCGATTTGGATACTCTACG 59.996 47.826 0.00 0.00 42.00 3.51
779 882 4.299978 GTCAGCCGATTTGGATACTCTAC 58.700 47.826 0.00 0.00 42.00 2.59
783 886 2.622064 GGTCAGCCGATTTGGATACT 57.378 50.000 0.00 0.00 42.00 2.12
815 918 1.375326 GTGGTGGTCAAGGTCTCCC 59.625 63.158 0.00 0.00 0.00 4.30
868 971 4.922026 GAACGTGGGGTGTGCCGT 62.922 66.667 0.00 0.00 34.97 5.68
870 973 4.572571 TGGAACGTGGGGTGTGCC 62.573 66.667 0.00 0.00 0.00 5.01
901 1007 0.680921 CCGGTGATTGATTGGGCTGT 60.681 55.000 0.00 0.00 0.00 4.40
975 1086 2.507324 GCTGTCCGCTTCGAGGTC 60.507 66.667 0.00 0.00 35.14 3.85
995 1106 2.108566 CGCAGGAGCCCATCTCTG 59.891 66.667 0.00 0.00 41.60 3.35
1181 1329 2.887790 CATCCGTGGAGACTGGAGA 58.112 57.895 0.00 0.00 34.75 3.71
1193 1341 0.914417 AACCATCCCACTCCATCCGT 60.914 55.000 0.00 0.00 0.00 4.69
1203 1351 2.537633 ACTCCGTACTAACCATCCCA 57.462 50.000 0.00 0.00 0.00 4.37
1210 1358 7.533426 TCTGAACAGAAATACTCCGTACTAAC 58.467 38.462 1.79 0.00 33.91 2.34
1241 1389 2.554032 ACACTGCTGCACCTTATGTTTC 59.446 45.455 0.00 0.00 0.00 2.78
1294 1443 0.250513 AGCAGAGACCCCGATTGAAC 59.749 55.000 0.00 0.00 0.00 3.18
1307 1456 1.517242 AAGGCGAAGAACAAGCAGAG 58.483 50.000 0.00 0.00 0.00 3.35
1323 1472 0.512952 GTCTTGTGCACACGCTAAGG 59.487 55.000 21.56 0.00 39.64 2.69
1349 1498 5.378332 TGCTACTCTACCATCTAAGGTCTC 58.622 45.833 0.00 0.00 42.06 3.36
1377 1526 2.673775 TCTGAATTCCCACTTGCCAA 57.326 45.000 2.27 0.00 0.00 4.52
1418 1567 0.575859 CGCACTCGATGATGCAGAAG 59.424 55.000 14.52 0.00 42.17 2.85
1419 1568 1.423721 GCGCACTCGATGATGCAGAA 61.424 55.000 0.30 0.00 42.17 3.02
1420 1569 1.879884 GCGCACTCGATGATGCAGA 60.880 57.895 0.30 0.00 42.17 4.26
1448 1597 0.395724 CAATCCCCTGGCTAACACCC 60.396 60.000 0.00 0.00 0.00 4.61
1481 1630 7.895962 ACTAGTGGTATATCTAAGGCATCATGA 59.104 37.037 0.00 0.00 0.00 3.07
1510 1659 9.286946 CAGTAGCACAAAGTTATACAGTAGTAC 57.713 37.037 0.00 0.00 31.96 2.73
1511 1660 7.972277 GCAGTAGCACAAAGTTATACAGTAGTA 59.028 37.037 0.00 0.00 41.58 1.82
1512 1661 6.812160 GCAGTAGCACAAAGTTATACAGTAGT 59.188 38.462 0.00 0.00 41.58 2.73
1513 1662 7.009631 CAGCAGTAGCACAAAGTTATACAGTAG 59.990 40.741 0.00 0.00 45.49 2.57
1514 1663 6.811665 CAGCAGTAGCACAAAGTTATACAGTA 59.188 38.462 0.00 0.00 45.49 2.74
1515 1664 5.639506 CAGCAGTAGCACAAAGTTATACAGT 59.360 40.000 0.00 0.00 45.49 3.55
1516 1665 5.639506 ACAGCAGTAGCACAAAGTTATACAG 59.360 40.000 0.00 0.00 45.49 2.74
1517 1666 5.547465 ACAGCAGTAGCACAAAGTTATACA 58.453 37.500 0.00 0.00 45.49 2.29
1558 1707 7.760794 CACACAGTGGCATATCAAAATGTATTT 59.239 33.333 5.31 0.00 0.00 1.40
1570 1727 2.237143 ACAGTAGCACACAGTGGCATAT 59.763 45.455 14.26 0.04 33.64 1.78
1611 1768 5.958955 AGTGCAATCTTCCTAAAAGCAATC 58.041 37.500 0.00 0.00 31.78 2.67
1637 1794 3.181480 GCAGTAGAAGCAGAGGAAGTAGG 60.181 52.174 0.00 0.00 0.00 3.18
1638 1795 3.181480 GGCAGTAGAAGCAGAGGAAGTAG 60.181 52.174 0.00 0.00 0.00 2.57
1661 1818 6.356556 TGATATCCATTTACAGGTTCCAGTG 58.643 40.000 0.00 0.00 0.00 3.66
1697 1854 1.228063 CCTTATGCAGCGCCATCCT 60.228 57.895 2.29 0.00 0.00 3.24
1703 1860 0.029834 CAACCATCCTTATGCAGCGC 59.970 55.000 0.00 0.00 0.00 5.92
1704 1861 1.382522 ACAACCATCCTTATGCAGCG 58.617 50.000 0.00 0.00 0.00 5.18
1744 1901 0.306840 CTGGCAGCGATAACAGCATG 59.693 55.000 0.00 0.00 46.00 4.06
1802 1959 5.260424 TGTGGAGCATATTAAAAAGGAGCA 58.740 37.500 0.00 0.00 0.00 4.26
1806 1963 7.832503 CCTTTTGTGGAGCATATTAAAAAGG 57.167 36.000 9.01 9.01 43.17 3.11
1813 1970 4.888326 TTTGCCTTTTGTGGAGCATATT 57.112 36.364 0.00 0.00 34.72 1.28
1928 2085 5.891551 AGCATCAATAGGTTTCCCGTTTAAT 59.108 36.000 0.00 0.00 35.12 1.40
1942 2099 8.195436 ACAATTCCAATCAAGAAGCATCAATAG 58.805 33.333 0.00 0.00 0.00 1.73
1991 2148 1.203112 AGAGGGAGAGCAGAACAGTCA 60.203 52.381 0.00 0.00 0.00 3.41
1994 2151 1.265236 ACAGAGGGAGAGCAGAACAG 58.735 55.000 0.00 0.00 0.00 3.16
2017 2174 0.867753 GCCATACAGCACTCGAGACG 60.868 60.000 21.68 10.88 0.00 4.18
2022 2179 0.179148 TGTACGCCATACAGCACTCG 60.179 55.000 0.00 0.00 38.95 4.18
2043 2203 1.134280 CACCTGCCCTCCACTTCTATG 60.134 57.143 0.00 0.00 0.00 2.23
2100 2260 3.879295 TCTGCAGCATACATAAAGAAGGC 59.121 43.478 9.47 0.00 0.00 4.35
2147 2307 5.755375 TGAAGGAAGCAAGAAATAGATAGCG 59.245 40.000 0.00 0.00 0.00 4.26
2267 2427 5.772825 GCAATCTCACTGCCCATATAAAA 57.227 39.130 0.00 0.00 33.51 1.52
2278 2438 7.594015 GCTATATTCAAAATGGCAATCTCACTG 59.406 37.037 0.00 0.00 31.69 3.66
2311 2474 7.187824 AGACCTAATCAAACAGAGAATAGCA 57.812 36.000 0.00 0.00 0.00 3.49
2327 2490 3.065095 GTCGTGTAGCTCGAAGACCTAAT 59.935 47.826 0.00 0.00 39.01 1.73
2337 2500 1.939785 GCCATCGTCGTGTAGCTCG 60.940 63.158 0.00 0.00 0.00 5.03
2448 2611 0.386858 ACGACTCGACATCCAACGTG 60.387 55.000 5.20 0.00 0.00 4.49
2460 2623 1.325640 CCATCAGATGCAAACGACTCG 59.674 52.381 4.68 0.00 0.00 4.18
2671 2834 2.532531 CTAGCAAGCAACATGAACGG 57.467 50.000 0.00 0.00 0.00 4.44
2757 2924 6.015688 ACAAGACTGAAAATACAGACCTCGTA 60.016 38.462 0.00 0.00 40.63 3.43
2774 2942 3.740321 GCTCTTTCAGAGTGACAAGACTG 59.260 47.826 2.79 0.00 44.12 3.51
2801 2969 2.333938 GCAACAGCACCAGCACAG 59.666 61.111 0.00 0.00 45.49 3.66
2815 2983 6.821388 ACATAAAAATGTTACAACCAGGCAA 58.179 32.000 0.00 0.00 0.00 4.52
2878 3046 6.700960 TGAAATATTGCAAAATATTCCCGCAG 59.299 34.615 1.71 0.00 35.05 5.18
3110 3278 4.632153 CCCCCACTAACATATTTCTCTCG 58.368 47.826 0.00 0.00 0.00 4.04
3187 3637 1.452399 GAGACGAGCGAGTGTTTGAAC 59.548 52.381 0.00 0.00 0.00 3.18
3188 3638 1.767289 GAGACGAGCGAGTGTTTGAA 58.233 50.000 0.00 0.00 0.00 2.69
3205 3655 1.937899 ACAAACCTTTTGGACGACGAG 59.062 47.619 0.00 0.00 44.07 4.18
3309 3759 0.250295 TCAAGGAACCTCAACCGCAG 60.250 55.000 0.00 0.00 0.00 5.18
3319 3769 6.378280 ACAGAACCAATATTCATCAAGGAACC 59.622 38.462 0.00 0.00 0.00 3.62
3338 3788 6.049790 ACTGACTAGAAAGGTTTCACAGAAC 58.950 40.000 17.32 9.85 39.61 3.01
3341 3791 7.711339 AGTTTACTGACTAGAAAGGTTTCACAG 59.289 37.037 0.00 9.94 39.61 3.66
3366 3816 9.073368 CAACTTCAGAAGATAATTCATTTGCAG 57.927 33.333 17.56 0.00 0.00 4.41
3367 3817 8.030692 CCAACTTCAGAAGATAATTCATTTGCA 58.969 33.333 17.56 0.00 0.00 4.08
3368 3818 8.246180 TCCAACTTCAGAAGATAATTCATTTGC 58.754 33.333 17.56 0.00 0.00 3.68
3369 3819 9.784680 CTCCAACTTCAGAAGATAATTCATTTG 57.215 33.333 17.56 7.19 0.00 2.32
3370 3820 9.745018 TCTCCAACTTCAGAAGATAATTCATTT 57.255 29.630 17.56 0.00 0.00 2.32
3371 3821 9.917887 ATCTCCAACTTCAGAAGATAATTCATT 57.082 29.630 17.56 0.00 0.00 2.57
3372 3822 9.558396 GATCTCCAACTTCAGAAGATAATTCAT 57.442 33.333 17.56 0.74 0.00 2.57
3373 3823 8.542926 TGATCTCCAACTTCAGAAGATAATTCA 58.457 33.333 17.56 7.75 0.00 2.57
3375 3825 9.558396 GATGATCTCCAACTTCAGAAGATAATT 57.442 33.333 17.56 0.00 0.00 1.40
3377 3827 7.068716 TCGATGATCTCCAACTTCAGAAGATAA 59.931 37.037 17.56 0.00 0.00 1.75
3378 3828 6.547510 TCGATGATCTCCAACTTCAGAAGATA 59.452 38.462 17.56 0.00 0.00 1.98
3379 3829 5.362143 TCGATGATCTCCAACTTCAGAAGAT 59.638 40.000 17.56 1.55 0.00 2.40
3380 3830 4.706962 TCGATGATCTCCAACTTCAGAAGA 59.293 41.667 17.56 0.00 0.00 2.87
3381 3831 5.003692 TCGATGATCTCCAACTTCAGAAG 57.996 43.478 8.77 8.77 0.00 2.85
3384 3834 4.111198 CACTCGATGATCTCCAACTTCAG 58.889 47.826 0.00 0.00 0.00 3.02
3386 3836 2.863137 GCACTCGATGATCTCCAACTTC 59.137 50.000 0.00 0.00 0.00 3.01
3387 3837 2.736719 CGCACTCGATGATCTCCAACTT 60.737 50.000 0.00 0.00 38.10 2.66
3389 3839 1.203928 CGCACTCGATGATCTCCAAC 58.796 55.000 0.00 0.00 38.10 3.77
3392 3842 2.013483 CGCGCACTCGATGATCTCC 61.013 63.158 8.75 0.00 38.10 3.71
3393 3843 2.013483 CCGCGCACTCGATGATCTC 61.013 63.158 8.75 0.00 38.10 2.75
3394 3844 1.800283 ATCCGCGCACTCGATGATCT 61.800 55.000 8.75 0.00 38.10 2.75
3395 3845 0.941463 AATCCGCGCACTCGATGATC 60.941 55.000 8.75 0.00 38.10 2.92
3396 3846 0.530650 AAATCCGCGCACTCGATGAT 60.531 50.000 8.75 0.00 38.10 2.45
3397 3847 1.145759 GAAATCCGCGCACTCGATGA 61.146 55.000 8.75 0.00 38.10 2.92
3398 3848 1.273887 GAAATCCGCGCACTCGATG 59.726 57.895 8.75 0.00 38.10 3.84
3399 3849 2.230940 CGAAATCCGCGCACTCGAT 61.231 57.895 8.75 0.00 38.10 3.59
3400 3850 2.878991 CGAAATCCGCGCACTCGA 60.879 61.111 8.75 0.00 38.10 4.04
3401 3851 3.913573 CCGAAATCCGCGCACTCG 61.914 66.667 8.75 7.40 36.84 4.18
3402 3852 3.564027 CCCGAAATCCGCGCACTC 61.564 66.667 8.75 0.00 36.84 3.51
3405 3855 3.726595 CTACCCCGAAATCCGCGCA 62.727 63.158 8.75 0.00 36.84 6.09
3406 3856 2.965462 CTACCCCGAAATCCGCGC 60.965 66.667 0.00 0.00 36.84 6.86
3407 3857 2.279918 CCTACCCCGAAATCCGCG 60.280 66.667 0.00 0.00 36.84 6.46
3408 3858 1.765597 ATCCCTACCCCGAAATCCGC 61.766 60.000 0.00 0.00 36.84 5.54
3409 3859 0.034896 CATCCCTACCCCGAAATCCG 59.965 60.000 0.00 0.00 38.18 4.18
3410 3860 0.250770 GCATCCCTACCCCGAAATCC 60.251 60.000 0.00 0.00 0.00 3.01
3411 3861 0.250770 GGCATCCCTACCCCGAAATC 60.251 60.000 0.00 0.00 0.00 2.17
3412 3862 0.697854 AGGCATCCCTACCCCGAAAT 60.698 55.000 0.00 0.00 40.58 2.17
3413 3863 0.917333 AAGGCATCCCTACCCCGAAA 60.917 55.000 0.00 0.00 41.90 3.46
3414 3864 0.030909 TAAGGCATCCCTACCCCGAA 60.031 55.000 0.00 0.00 41.90 4.30
3415 3865 0.761702 GTAAGGCATCCCTACCCCGA 60.762 60.000 0.00 0.00 41.90 5.14
3416 3866 1.052124 TGTAAGGCATCCCTACCCCG 61.052 60.000 0.00 0.00 41.90 5.73
3417 3867 1.446016 ATGTAAGGCATCCCTACCCC 58.554 55.000 0.00 0.00 41.90 4.95
3418 3868 2.224793 GGAATGTAAGGCATCCCTACCC 60.225 54.545 0.00 0.00 41.90 3.69
3419 3869 2.441750 TGGAATGTAAGGCATCCCTACC 59.558 50.000 0.00 0.00 41.90 3.18
3420 3870 3.857157 TGGAATGTAAGGCATCCCTAC 57.143 47.619 0.00 0.00 41.90 3.18
3421 3871 4.042062 CAGATGGAATGTAAGGCATCCCTA 59.958 45.833 0.00 0.00 41.90 3.53
3422 3872 3.059097 AGATGGAATGTAAGGCATCCCT 58.941 45.455 0.00 0.00 45.77 4.20
3423 3873 3.152341 CAGATGGAATGTAAGGCATCCC 58.848 50.000 0.00 0.00 36.67 3.85
3424 3874 3.152341 CCAGATGGAATGTAAGGCATCC 58.848 50.000 0.00 0.00 36.67 3.51
3425 3875 3.825328 ACCAGATGGAATGTAAGGCATC 58.175 45.455 5.72 0.00 36.21 3.91
3426 3876 3.959495 ACCAGATGGAATGTAAGGCAT 57.041 42.857 5.72 0.00 37.83 4.40
3427 3877 3.737559 AACCAGATGGAATGTAAGGCA 57.262 42.857 5.72 0.00 38.94 4.75
3428 3878 4.016444 TGAAACCAGATGGAATGTAAGGC 58.984 43.478 5.72 0.00 38.94 4.35
3429 3879 5.653769 ACATGAAACCAGATGGAATGTAAGG 59.346 40.000 5.72 0.00 38.94 2.69
3430 3880 6.375174 TGACATGAAACCAGATGGAATGTAAG 59.625 38.462 5.72 0.00 38.94 2.34
3431 3881 6.244654 TGACATGAAACCAGATGGAATGTAA 58.755 36.000 5.72 1.13 38.94 2.41
3432 3882 5.814481 TGACATGAAACCAGATGGAATGTA 58.186 37.500 5.72 0.00 38.94 2.29
3433 3883 4.665451 TGACATGAAACCAGATGGAATGT 58.335 39.130 5.72 9.38 38.94 2.71
3434 3884 5.847111 ATGACATGAAACCAGATGGAATG 57.153 39.130 5.72 6.49 38.94 2.67
3435 3885 6.862469 AAATGACATGAAACCAGATGGAAT 57.138 33.333 5.72 0.00 38.94 3.01
3436 3886 6.669125 AAAATGACATGAAACCAGATGGAA 57.331 33.333 5.72 0.00 38.94 3.53
3484 4247 6.704937 TCAAGTTGATCATGATAAGCTAGCTG 59.295 38.462 20.16 5.44 0.00 4.24
3486 4249 7.361031 CCATCAAGTTGATCATGATAAGCTAGC 60.361 40.741 15.60 6.62 34.28 3.42
3487 4250 7.660617 ACCATCAAGTTGATCATGATAAGCTAG 59.339 37.037 15.60 0.26 34.28 3.42
3491 4254 6.544931 ACCACCATCAAGTTGATCATGATAAG 59.455 38.462 15.60 7.41 34.28 1.73
3496 4259 5.047872 TCAAACCACCATCAAGTTGATCATG 60.048 40.000 15.60 15.19 34.28 3.07
3516 4372 6.382570 TCTTCTTTTTCTTTCCCACCATCAAA 59.617 34.615 0.00 0.00 0.00 2.69
3523 4379 4.036380 TCGCTTCTTCTTTTTCTTTCCCAC 59.964 41.667 0.00 0.00 0.00 4.61
3526 4382 4.537965 GGTCGCTTCTTCTTTTTCTTTCC 58.462 43.478 0.00 0.00 0.00 3.13
3545 4401 0.784778 CTGACAGCGTTTCTTCGGTC 59.215 55.000 0.00 0.00 39.51 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.