Multiple sequence alignment - TraesCS6A01G288900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G288900 chr6A 100.000 2852 0 0 1 2852 520868524 520871375 0.000000e+00 5267
1 TraesCS6A01G288900 chr6D 85.332 1643 103 54 323 1908 379725085 379723524 0.000000e+00 1572
2 TraesCS6A01G288900 chr6D 91.860 430 20 10 2437 2852 379722962 379722534 1.140000e-163 586
3 TraesCS6A01G288900 chr6D 85.236 508 40 21 1957 2436 379723415 379722915 9.180000e-135 490
4 TraesCS6A01G288900 chr6D 90.840 131 4 7 191 317 379725744 379725618 4.890000e-38 169
5 TraesCS6A01G288900 chr6B 89.243 911 45 29 931 1822 566535054 566535930 0.000000e+00 1090
6 TraesCS6A01G288900 chr6B 86.578 678 42 28 272 929 566534358 566535006 0.000000e+00 702
7 TraesCS6A01G288900 chr6B 92.290 428 20 4 2437 2852 566536416 566536842 1.890000e-166 595
8 TraesCS6A01G288900 chr6B 88.215 297 32 2 2556 2852 147962861 147962568 4.520000e-93 351
9 TraesCS6A01G288900 chr3B 95.767 189 8 0 1 189 85097291 85097103 3.570000e-79 305
10 TraesCS6A01G288900 chr3B 96.237 186 7 0 1 186 455512684 455512869 3.570000e-79 305
11 TraesCS6A01G288900 chr3B 95.789 190 7 1 1 190 472645496 472645684 3.570000e-79 305
12 TraesCS6A01G288900 chr1B 96.257 187 6 1 1 186 573047973 573047787 3.570000e-79 305
13 TraesCS6A01G288900 chr3A 95.767 189 7 1 1 188 157034786 157034598 1.280000e-78 303
14 TraesCS6A01G288900 chr2B 95.745 188 7 1 1 187 749305078 749305265 4.620000e-78 302
15 TraesCS6A01G288900 chrUn 95.722 187 7 1 1 186 41827426 41827240 1.660000e-77 300
16 TraesCS6A01G288900 chr3D 95.238 189 9 0 1 189 459155028 459154840 1.660000e-77 300
17 TraesCS6A01G288900 chr4A 94.764 191 9 1 1 191 649884541 649884730 2.150000e-76 296


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G288900 chr6A 520868524 520871375 2851 False 5267.000000 5267 100.000000 1 2852 1 chr6A.!!$F1 2851
1 TraesCS6A01G288900 chr6D 379722534 379725744 3210 True 704.250000 1572 88.317000 191 2852 4 chr6D.!!$R1 2661
2 TraesCS6A01G288900 chr6B 566534358 566536842 2484 False 795.666667 1090 89.370333 272 2852 3 chr6B.!!$F1 2580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.179018 CTATGGGTTACTGCAGGGGC 60.179 60.0 19.93 6.89 41.68 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 2516 0.615331 AGGTCACCACTACATGCCAG 59.385 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.213799 CCTTCTCAAGTTTATTATAGATGAGGC 57.786 37.037 0.00 0.00 34.91 4.70
30 31 9.213799 CTTCTCAAGTTTATTATAGATGAGGCC 57.786 37.037 0.00 0.00 34.91 5.19
31 32 8.262601 TCTCAAGTTTATTATAGATGAGGCCA 57.737 34.615 5.01 0.00 34.91 5.36
32 33 8.713971 TCTCAAGTTTATTATAGATGAGGCCAA 58.286 33.333 5.01 0.00 34.91 4.52
33 34 8.677148 TCAAGTTTATTATAGATGAGGCCAAC 57.323 34.615 5.01 0.00 0.00 3.77
34 35 7.719633 TCAAGTTTATTATAGATGAGGCCAACC 59.280 37.037 5.01 0.00 0.00 3.77
51 52 1.213296 ACCTATGGGTTACTGCAGGG 58.787 55.000 19.93 8.48 44.73 4.45
52 53 0.474184 CCTATGGGTTACTGCAGGGG 59.526 60.000 19.93 0.00 0.00 4.79
53 54 0.179018 CTATGGGTTACTGCAGGGGC 60.179 60.000 19.93 6.89 41.68 5.80
54 55 0.623324 TATGGGTTACTGCAGGGGCT 60.623 55.000 19.93 0.00 41.91 5.19
55 56 0.623324 ATGGGTTACTGCAGGGGCTA 60.623 55.000 19.93 0.00 41.91 3.93
56 57 0.842905 TGGGTTACTGCAGGGGCTAA 60.843 55.000 19.93 4.46 41.91 3.09
57 58 0.330267 GGGTTACTGCAGGGGCTAAA 59.670 55.000 19.93 0.00 41.91 1.85
58 59 1.460504 GGTTACTGCAGGGGCTAAAC 58.539 55.000 19.93 6.38 41.91 2.01
59 60 1.271707 GGTTACTGCAGGGGCTAAACA 60.272 52.381 19.93 0.00 41.91 2.83
60 61 2.510613 GTTACTGCAGGGGCTAAACAA 58.489 47.619 19.93 0.00 41.91 2.83
61 62 3.089284 GTTACTGCAGGGGCTAAACAAT 58.911 45.455 19.93 0.00 41.91 2.71
62 63 2.309136 ACTGCAGGGGCTAAACAATT 57.691 45.000 19.93 0.00 41.91 2.32
63 64 3.449746 ACTGCAGGGGCTAAACAATTA 57.550 42.857 19.93 0.00 41.91 1.40
64 65 3.356290 ACTGCAGGGGCTAAACAATTAG 58.644 45.455 19.93 0.00 41.27 1.73
65 66 2.689983 CTGCAGGGGCTAAACAATTAGG 59.310 50.000 5.57 0.00 39.17 2.69
66 67 2.031870 GCAGGGGCTAAACAATTAGGG 58.968 52.381 0.00 0.00 39.17 3.53
67 68 2.357777 GCAGGGGCTAAACAATTAGGGA 60.358 50.000 0.00 0.00 39.17 4.20
68 69 3.880117 GCAGGGGCTAAACAATTAGGGAA 60.880 47.826 0.00 0.00 39.17 3.97
69 70 4.349365 CAGGGGCTAAACAATTAGGGAAA 58.651 43.478 0.00 0.00 39.17 3.13
70 71 4.775253 CAGGGGCTAAACAATTAGGGAAAA 59.225 41.667 0.00 0.00 39.17 2.29
71 72 5.425217 CAGGGGCTAAACAATTAGGGAAAAT 59.575 40.000 0.00 0.00 39.17 1.82
72 73 6.029431 AGGGGCTAAACAATTAGGGAAAATT 58.971 36.000 0.00 0.00 39.17 1.82
83 84 8.208718 CAATTAGGGAAAATTGTATCTCGTGA 57.791 34.615 1.98 0.00 40.44 4.35
84 85 8.338259 CAATTAGGGAAAATTGTATCTCGTGAG 58.662 37.037 1.98 0.00 40.44 3.51
85 86 5.422214 AGGGAAAATTGTATCTCGTGAGT 57.578 39.130 0.00 0.00 0.00 3.41
86 87 6.540438 AGGGAAAATTGTATCTCGTGAGTA 57.460 37.500 0.00 0.00 0.00 2.59
87 88 6.942976 AGGGAAAATTGTATCTCGTGAGTAA 58.057 36.000 0.00 0.00 0.00 2.24
88 89 7.565680 AGGGAAAATTGTATCTCGTGAGTAAT 58.434 34.615 0.00 0.00 0.00 1.89
89 90 8.047310 AGGGAAAATTGTATCTCGTGAGTAATT 58.953 33.333 0.00 0.00 0.00 1.40
90 91 8.122952 GGGAAAATTGTATCTCGTGAGTAATTG 58.877 37.037 0.00 0.00 0.00 2.32
91 92 8.665685 GGAAAATTGTATCTCGTGAGTAATTGT 58.334 33.333 0.00 0.00 0.00 2.71
92 93 9.690434 GAAAATTGTATCTCGTGAGTAATTGTC 57.310 33.333 0.00 1.97 0.00 3.18
93 94 8.771920 AAATTGTATCTCGTGAGTAATTGTCA 57.228 30.769 0.00 0.00 0.00 3.58
94 95 8.948631 AATTGTATCTCGTGAGTAATTGTCAT 57.051 30.769 0.00 0.00 0.00 3.06
95 96 7.755582 TTGTATCTCGTGAGTAATTGTCATG 57.244 36.000 5.78 5.78 32.98 3.07
96 97 5.748630 TGTATCTCGTGAGTAATTGTCATGC 59.251 40.000 6.88 0.00 31.94 4.06
97 98 3.521560 TCTCGTGAGTAATTGTCATGCC 58.478 45.455 6.88 0.00 31.94 4.40
98 99 2.267426 TCGTGAGTAATTGTCATGCCG 58.733 47.619 6.88 2.47 31.94 5.69
99 100 1.999735 CGTGAGTAATTGTCATGCCGT 59.000 47.619 0.00 0.00 0.00 5.68
100 101 3.119424 TCGTGAGTAATTGTCATGCCGTA 60.119 43.478 6.88 0.00 31.94 4.02
101 102 3.000078 CGTGAGTAATTGTCATGCCGTAC 60.000 47.826 0.00 0.00 0.00 3.67
102 103 3.308866 GTGAGTAATTGTCATGCCGTACC 59.691 47.826 0.00 0.00 0.00 3.34
103 104 3.196901 TGAGTAATTGTCATGCCGTACCT 59.803 43.478 0.00 0.00 0.00 3.08
104 105 3.793559 AGTAATTGTCATGCCGTACCTC 58.206 45.455 0.00 0.00 0.00 3.85
105 106 1.651987 AATTGTCATGCCGTACCTCG 58.348 50.000 0.00 0.00 39.52 4.63
114 115 2.654877 CGTACCTCGGCCTTGTGT 59.345 61.111 0.00 0.00 35.71 3.72
115 116 1.885157 CGTACCTCGGCCTTGTGTA 59.115 57.895 0.00 0.00 35.71 2.90
116 117 0.244450 CGTACCTCGGCCTTGTGTAA 59.756 55.000 0.00 0.00 35.71 2.41
117 118 1.718396 GTACCTCGGCCTTGTGTAAC 58.282 55.000 0.00 0.00 37.35 2.50
118 119 1.274447 GTACCTCGGCCTTGTGTAACT 59.726 52.381 0.00 0.00 38.04 2.24
119 120 0.320697 ACCTCGGCCTTGTGTAACTC 59.679 55.000 0.00 0.00 38.04 3.01
120 121 0.608640 CCTCGGCCTTGTGTAACTCT 59.391 55.000 0.00 0.00 38.04 3.24
121 122 1.822990 CCTCGGCCTTGTGTAACTCTA 59.177 52.381 0.00 0.00 38.04 2.43
122 123 2.416972 CCTCGGCCTTGTGTAACTCTAC 60.417 54.545 0.00 0.00 38.04 2.59
123 124 2.230508 CTCGGCCTTGTGTAACTCTACA 59.769 50.000 0.00 0.00 38.04 2.74
124 125 2.629137 TCGGCCTTGTGTAACTCTACAA 59.371 45.455 0.00 0.00 39.75 2.41
125 126 3.069872 TCGGCCTTGTGTAACTCTACAAA 59.930 43.478 0.00 0.00 39.75 2.83
126 127 3.810941 CGGCCTTGTGTAACTCTACAAAA 59.189 43.478 0.00 0.00 39.75 2.44
127 128 4.319261 CGGCCTTGTGTAACTCTACAAAAC 60.319 45.833 0.00 0.00 39.75 2.43
128 129 4.820173 GGCCTTGTGTAACTCTACAAAACT 59.180 41.667 0.00 0.00 39.75 2.66
129 130 5.049612 GGCCTTGTGTAACTCTACAAAACTC 60.050 44.000 0.00 0.00 39.75 3.01
130 131 5.758784 GCCTTGTGTAACTCTACAAAACTCT 59.241 40.000 0.00 0.00 39.75 3.24
131 132 6.927381 GCCTTGTGTAACTCTACAAAACTCTA 59.073 38.462 0.00 0.00 39.75 2.43
132 133 7.603024 GCCTTGTGTAACTCTACAAAACTCTAT 59.397 37.037 0.00 0.00 39.75 1.98
133 134 9.490379 CCTTGTGTAACTCTACAAAACTCTATT 57.510 33.333 0.00 0.00 39.75 1.73
136 137 9.909644 TGTGTAACTCTACAAAACTCTATTCTC 57.090 33.333 0.00 0.00 39.75 2.87
137 138 9.356433 GTGTAACTCTACAAAACTCTATTCTCC 57.644 37.037 0.00 0.00 39.75 3.71
138 139 9.310449 TGTAACTCTACAAAACTCTATTCTCCT 57.690 33.333 0.00 0.00 35.03 3.69
139 140 9.791820 GTAACTCTACAAAACTCTATTCTCCTC 57.208 37.037 0.00 0.00 0.00 3.71
140 141 8.658840 AACTCTACAAAACTCTATTCTCCTCT 57.341 34.615 0.00 0.00 0.00 3.69
141 142 9.756571 AACTCTACAAAACTCTATTCTCCTCTA 57.243 33.333 0.00 0.00 0.00 2.43
142 143 9.181061 ACTCTACAAAACTCTATTCTCCTCTAC 57.819 37.037 0.00 0.00 0.00 2.59
143 144 9.403583 CTCTACAAAACTCTATTCTCCTCTACT 57.596 37.037 0.00 0.00 0.00 2.57
144 145 9.756571 TCTACAAAACTCTATTCTCCTCTACTT 57.243 33.333 0.00 0.00 0.00 2.24
157 158 7.768807 TCTCCTCTACTTTAATAGATGAGGC 57.231 40.000 13.82 0.00 41.08 4.70
158 159 7.298374 TCTCCTCTACTTTAATAGATGAGGCA 58.702 38.462 13.82 7.52 41.08 4.75
159 160 7.785028 TCTCCTCTACTTTAATAGATGAGGCAA 59.215 37.037 13.82 8.21 41.08 4.52
160 161 8.319057 TCCTCTACTTTAATAGATGAGGCAAA 57.681 34.615 0.00 0.00 41.78 3.68
161 162 8.938883 TCCTCTACTTTAATAGATGAGGCAAAT 58.061 33.333 0.00 0.00 41.78 2.32
162 163 9.566432 CCTCTACTTTAATAGATGAGGCAAATT 57.434 33.333 0.00 0.00 38.74 1.82
223 224 0.310854 CTGGAACCAAAACCGACAGC 59.689 55.000 0.00 0.00 0.00 4.40
256 257 5.773176 AGGGACGACAAACCAGAAAAATAAT 59.227 36.000 0.00 0.00 0.00 1.28
261 262 5.737290 CGACAAACCAGAAAAATAATAGGCG 59.263 40.000 0.00 0.00 0.00 5.52
269 270 6.919662 CCAGAAAAATAATAGGCGTAGTACGA 59.080 38.462 26.29 5.94 46.05 3.43
270 271 7.436080 CCAGAAAAATAATAGGCGTAGTACGAA 59.564 37.037 26.29 10.71 46.05 3.85
299 300 3.515901 CCTAGCTAGTGGATATGGGGTTC 59.484 52.174 19.31 0.00 0.00 3.62
310 311 1.293062 ATGGGGTTCTGTGAGCTGAT 58.707 50.000 0.00 0.00 0.00 2.90
312 313 0.615331 GGGGTTCTGTGAGCTGATGA 59.385 55.000 0.00 0.00 0.00 2.92
314 315 1.406614 GGGTTCTGTGAGCTGATGAGG 60.407 57.143 0.00 0.00 0.00 3.86
315 316 1.552337 GGTTCTGTGAGCTGATGAGGA 59.448 52.381 0.00 0.00 0.00 3.71
333 864 3.615155 AGGAAGAGAATTAGTGGCAAGC 58.385 45.455 0.00 0.00 0.00 4.01
414 945 0.395036 CACCCACAACAGACCAACCA 60.395 55.000 0.00 0.00 0.00 3.67
424 956 5.163457 ACAACAGACCAACCAAATTACCTTG 60.163 40.000 0.00 0.00 0.00 3.61
501 1033 3.601435 GAACCCTAGAAGAAGGCAAGAC 58.399 50.000 0.00 0.00 35.09 3.01
506 1038 2.278332 AGAAGAAGGCAAGACCAACC 57.722 50.000 0.00 0.00 43.14 3.77
507 1039 1.777272 AGAAGAAGGCAAGACCAACCT 59.223 47.619 0.00 0.00 43.14 3.50
508 1040 2.979678 AGAAGAAGGCAAGACCAACCTA 59.020 45.455 0.00 0.00 43.14 3.08
509 1041 3.394606 AGAAGAAGGCAAGACCAACCTAA 59.605 43.478 0.00 0.00 43.14 2.69
511 1043 2.441750 AGAAGGCAAGACCAACCTAACA 59.558 45.455 0.00 0.00 43.14 2.41
512 1044 3.117663 AGAAGGCAAGACCAACCTAACAA 60.118 43.478 0.00 0.00 43.14 2.83
513 1045 2.583143 AGGCAAGACCAACCTAACAAC 58.417 47.619 0.00 0.00 43.14 3.32
514 1046 1.265905 GGCAAGACCAACCTAACAACG 59.734 52.381 0.00 0.00 38.86 4.10
528 1070 1.633561 ACAACGCTGATCATGTCTCG 58.366 50.000 0.00 0.00 0.00 4.04
532 1074 1.743394 ACGCTGATCATGTCTCGTACA 59.257 47.619 0.00 0.00 43.86 2.90
533 1075 2.223363 ACGCTGATCATGTCTCGTACAG 60.223 50.000 0.00 0.00 42.70 2.74
536 1078 3.612539 CTGATCATGTCTCGTACAGTCG 58.387 50.000 0.00 0.00 42.70 4.18
537 1079 3.007635 TGATCATGTCTCGTACAGTCGT 58.992 45.455 0.00 0.00 42.70 4.34
538 1080 4.186159 TGATCATGTCTCGTACAGTCGTA 58.814 43.478 0.00 0.00 42.70 3.43
539 1081 4.033702 TGATCATGTCTCGTACAGTCGTAC 59.966 45.833 0.00 0.00 42.70 3.67
540 1082 3.593096 TCATGTCTCGTACAGTCGTACT 58.407 45.455 0.00 0.00 44.97 2.73
584 1126 6.092122 TCCATGTTTACAGTATTGCTCTTTCG 59.908 38.462 0.00 0.00 0.00 3.46
594 1136 4.655527 CTCTTTCGAGCCACACGT 57.344 55.556 0.00 0.00 0.00 4.49
613 1170 3.181448 ACGTCTACACCCCTTTGACAATT 60.181 43.478 0.00 0.00 0.00 2.32
614 1171 3.435671 CGTCTACACCCCTTTGACAATTC 59.564 47.826 0.00 0.00 0.00 2.17
615 1172 4.394729 GTCTACACCCCTTTGACAATTCA 58.605 43.478 0.00 0.00 0.00 2.57
616 1173 5.010282 GTCTACACCCCTTTGACAATTCAT 58.990 41.667 0.00 0.00 0.00 2.57
617 1174 5.476945 GTCTACACCCCTTTGACAATTCATT 59.523 40.000 0.00 0.00 0.00 2.57
618 1175 4.871933 ACACCCCTTTGACAATTCATTC 57.128 40.909 0.00 0.00 0.00 2.67
619 1176 4.222336 ACACCCCTTTGACAATTCATTCA 58.778 39.130 0.00 0.00 0.00 2.57
620 1177 4.039124 ACACCCCTTTGACAATTCATTCAC 59.961 41.667 0.00 0.00 0.00 3.18
680 1245 1.001764 CCTGAATGGCCTCAGCACA 60.002 57.895 15.07 1.86 41.36 4.57
796 1373 2.803956 CACATTTTCCAAAAGCTGGCAG 59.196 45.455 10.94 10.94 45.98 4.85
799 1376 1.050204 TTTCCAAAAGCTGGCAGCAT 58.950 45.000 38.09 26.74 45.56 3.79
800 1377 0.319083 TTCCAAAAGCTGGCAGCATG 59.681 50.000 38.09 30.25 45.56 4.06
802 1379 0.535335 CCAAAAGCTGGCAGCATGAT 59.465 50.000 38.09 19.92 45.56 2.45
803 1380 1.640428 CAAAAGCTGGCAGCATGATG 58.360 50.000 38.09 26.03 45.56 3.07
828 1405 1.514657 CAACGTTGCATGATGCCCG 60.515 57.895 16.51 20.21 44.23 6.13
839 1416 3.699134 GATGCCCGTCAAGACCCCC 62.699 68.421 0.00 0.00 0.00 5.40
853 1432 1.128188 ACCCCCGCTAATCTGATCCC 61.128 60.000 0.00 0.00 0.00 3.85
854 1433 1.127567 CCCCCGCTAATCTGATCCCA 61.128 60.000 0.00 0.00 0.00 4.37
855 1434 0.322975 CCCCGCTAATCTGATCCCAG 59.677 60.000 0.00 0.00 41.74 4.45
856 1435 1.051812 CCCGCTAATCTGATCCCAGT 58.948 55.000 0.00 0.00 41.16 4.00
857 1436 1.001406 CCCGCTAATCTGATCCCAGTC 59.999 57.143 0.00 0.00 41.16 3.51
858 1437 1.967066 CCGCTAATCTGATCCCAGTCT 59.033 52.381 0.00 0.00 41.16 3.24
859 1438 2.288702 CCGCTAATCTGATCCCAGTCTG 60.289 54.545 0.00 0.00 41.16 3.51
860 1439 2.288702 CGCTAATCTGATCCCAGTCTGG 60.289 54.545 12.40 12.40 41.16 3.86
868 1447 0.252421 ATCCCAGTCTGGCAGTCTCA 60.252 55.000 13.99 0.93 35.79 3.27
893 1472 3.813166 CCCAATCCCATGTCGTTATGTAC 59.187 47.826 0.00 0.00 0.00 2.90
1001 1634 0.462047 CCTCCGTAATCACAGGCCAC 60.462 60.000 5.01 0.00 0.00 5.01
1002 1635 0.537188 CTCCGTAATCACAGGCCACT 59.463 55.000 5.01 0.00 0.00 4.00
1003 1636 0.535335 TCCGTAATCACAGGCCACTC 59.465 55.000 5.01 0.00 0.00 3.51
1004 1637 0.537188 CCGTAATCACAGGCCACTCT 59.463 55.000 5.01 0.00 0.00 3.24
1005 1638 1.471676 CCGTAATCACAGGCCACTCTC 60.472 57.143 5.01 0.00 0.00 3.20
1011 1644 2.125350 CAGGCCACTCTCTTCGCC 60.125 66.667 5.01 0.00 41.96 5.54
1015 1648 2.492090 CCACTCTCTTCGCCCTCG 59.508 66.667 0.00 0.00 0.00 4.63
1016 1649 2.202676 CACTCTCTTCGCCCTCGC 60.203 66.667 0.00 0.00 35.26 5.03
1033 1666 3.691342 CCTCCGTTCCGCTCCACA 61.691 66.667 0.00 0.00 0.00 4.17
1034 1667 2.432628 CTCCGTTCCGCTCCACAC 60.433 66.667 0.00 0.00 0.00 3.82
1035 1668 3.934391 CTCCGTTCCGCTCCACACC 62.934 68.421 0.00 0.00 0.00 4.16
1036 1669 4.003788 CCGTTCCGCTCCACACCT 62.004 66.667 0.00 0.00 0.00 4.00
1037 1670 2.642254 CCGTTCCGCTCCACACCTA 61.642 63.158 0.00 0.00 0.00 3.08
1038 1671 1.290955 CGTTCCGCTCCACACCTAA 59.709 57.895 0.00 0.00 0.00 2.69
1039 1672 1.012486 CGTTCCGCTCCACACCTAAC 61.012 60.000 0.00 0.00 0.00 2.34
1040 1673 0.034337 GTTCCGCTCCACACCTAACA 59.966 55.000 0.00 0.00 0.00 2.41
1041 1674 0.034337 TTCCGCTCCACACCTAACAC 59.966 55.000 0.00 0.00 0.00 3.32
1042 1675 1.375523 CCGCTCCACACCTAACACC 60.376 63.158 0.00 0.00 0.00 4.16
1043 1676 1.671742 CGCTCCACACCTAACACCT 59.328 57.895 0.00 0.00 0.00 4.00
1081 1724 2.279517 CGAGCGAGCATGTACCCC 60.280 66.667 0.00 0.00 0.00 4.95
1111 1754 2.439883 AGCGTCCCGTACCTCTCC 60.440 66.667 0.00 0.00 0.00 3.71
1181 1824 1.811359 ACGACTTCCTCTTCCAGTACG 59.189 52.381 0.00 0.00 0.00 3.67
1182 1825 1.132643 CGACTTCCTCTTCCAGTACGG 59.867 57.143 0.00 0.00 0.00 4.02
1206 1849 2.202932 CGGGCTCATGGTTCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
1211 1854 3.000819 TCATGGTTCCTCGGGCGT 61.001 61.111 0.00 0.00 0.00 5.68
1326 1984 2.479650 GGACGAGTCGGACGAGTG 59.520 66.667 18.30 2.67 34.70 3.51
1339 1997 2.594592 GAGTGCCACCACCACCAC 60.595 66.667 0.00 0.00 43.09 4.16
1340 1998 4.204028 AGTGCCACCACCACCACC 62.204 66.667 0.00 0.00 43.09 4.61
1341 1999 4.514585 GTGCCACCACCACCACCA 62.515 66.667 0.00 0.00 35.92 4.17
1526 2184 2.125512 AGCTCAACCGCGTCATCC 60.126 61.111 4.92 0.00 34.40 3.51
1536 2194 4.873129 CGTCATCCGGGACTGCGG 62.873 72.222 0.00 0.00 35.63 5.69
1665 2323 0.320771 GCGGGAGAAGTTGAGCTTGA 60.321 55.000 0.00 0.00 37.59 3.02
1681 2339 2.439156 GATGCTGCCCAGGGTGAC 60.439 66.667 7.55 0.00 0.00 3.67
1708 2366 5.948992 TCGACTAGATGATGATCGATGTT 57.051 39.130 0.54 0.00 36.92 2.71
1710 2368 7.617041 TCGACTAGATGATGATCGATGTTAT 57.383 36.000 0.54 0.00 36.92 1.89
1711 2369 8.045176 TCGACTAGATGATGATCGATGTTATT 57.955 34.615 0.54 0.00 36.92 1.40
1712 2370 9.162764 TCGACTAGATGATGATCGATGTTATTA 57.837 33.333 0.54 0.00 36.92 0.98
1713 2371 9.432077 CGACTAGATGATGATCGATGTTATTAG 57.568 37.037 0.54 0.00 34.77 1.73
1753 2411 3.421844 ACCATTTTTGTACCTCTGCTCC 58.578 45.455 0.00 0.00 0.00 4.70
1754 2412 2.420022 CCATTTTTGTACCTCTGCTCCG 59.580 50.000 0.00 0.00 0.00 4.63
1755 2413 1.519408 TTTTTGTACCTCTGCTCCGC 58.481 50.000 0.00 0.00 0.00 5.54
1761 2419 4.869440 CCTCTGCTCCGCTGCTCG 62.869 72.222 0.00 0.00 38.08 5.03
1828 2486 4.181578 CCAGTGTTGGCATGTACTACTAC 58.818 47.826 0.00 0.00 37.73 2.73
1858 2516 7.602753 ACTAGTGGTTCCAAATAAGAAAATGC 58.397 34.615 0.00 0.00 0.00 3.56
1871 2529 2.756760 AGAAAATGCTGGCATGTAGTGG 59.243 45.455 8.91 0.00 36.68 4.00
1875 2533 0.321564 TGCTGGCATGTAGTGGTGAC 60.322 55.000 0.00 0.00 0.00 3.67
1876 2534 1.026718 GCTGGCATGTAGTGGTGACC 61.027 60.000 0.00 0.00 0.00 4.02
1878 2536 1.003580 CTGGCATGTAGTGGTGACCTT 59.996 52.381 2.11 0.00 0.00 3.50
1908 2566 8.877779 AGTTTCTTTCATAATCTTCTGTCATCG 58.122 33.333 0.00 0.00 0.00 3.84
1912 2570 8.200120 TCTTTCATAATCTTCTGTCATCGTCAT 58.800 33.333 0.00 0.00 0.00 3.06
1913 2571 7.704789 TTCATAATCTTCTGTCATCGTCATG 57.295 36.000 0.00 0.00 0.00 3.07
1915 2573 7.940850 TCATAATCTTCTGTCATCGTCATGTA 58.059 34.615 0.00 0.00 0.00 2.29
1927 2663 4.713824 TCGTCATGTAGTACAAAGGAGG 57.286 45.455 7.16 10.74 0.00 4.30
1928 2664 4.338012 TCGTCATGTAGTACAAAGGAGGA 58.662 43.478 7.16 12.64 0.00 3.71
1929 2665 4.768448 TCGTCATGTAGTACAAAGGAGGAA 59.232 41.667 7.16 0.72 0.00 3.36
1930 2666 4.863131 CGTCATGTAGTACAAAGGAGGAAC 59.137 45.833 7.16 0.00 0.00 3.62
1932 2668 6.465084 GTCATGTAGTACAAAGGAGGAACTT 58.535 40.000 7.16 0.00 41.55 2.66
1933 2669 6.590677 GTCATGTAGTACAAAGGAGGAACTTC 59.409 42.308 7.16 0.00 41.55 3.01
1935 2671 6.681729 TGTAGTACAAAGGAGGAACTTCAT 57.318 37.500 0.00 0.00 41.55 2.57
1936 2672 6.464222 TGTAGTACAAAGGAGGAACTTCATG 58.536 40.000 0.00 0.00 41.55 3.07
1937 2673 4.327680 AGTACAAAGGAGGAACTTCATGC 58.672 43.478 0.00 0.00 41.55 4.06
1939 2675 3.416156 ACAAAGGAGGAACTTCATGCTC 58.584 45.455 0.00 0.00 41.55 4.26
1942 2678 1.836802 AGGAGGAACTTCATGCTCTCC 59.163 52.381 0.00 0.00 41.55 3.71
1944 2680 2.238395 GGAGGAACTTCATGCTCTCCTT 59.762 50.000 0.00 0.00 41.55 3.36
1946 2682 4.331108 GAGGAACTTCATGCTCTCCTTTT 58.669 43.478 6.84 0.00 41.55 2.27
1947 2683 4.734266 AGGAACTTCATGCTCTCCTTTTT 58.266 39.130 0.00 0.00 32.42 1.94
1978 2714 2.203470 AGGGCCATGGCAAAAATTTG 57.797 45.000 36.56 1.52 44.11 2.32
1997 2733 4.357018 TTGCGAGTGCTATATATCTCCG 57.643 45.455 0.00 0.00 43.34 4.63
2049 2791 6.317893 AGTTTAAAAACCTCTCTCGCAGAAAA 59.682 34.615 2.02 0.00 39.71 2.29
2064 2806 8.656849 TCTCGCAGAAAAACAAAGATAATCTAC 58.343 33.333 0.00 0.00 34.09 2.59
2108 2851 5.630680 CGATGTAATTGCCCAATCAATTAGC 59.369 40.000 8.63 5.89 44.68 3.09
2109 2852 6.515531 CGATGTAATTGCCCAATCAATTAGCT 60.516 38.462 8.63 0.00 44.68 3.32
2110 2853 5.904941 TGTAATTGCCCAATCAATTAGCTG 58.095 37.500 0.00 0.00 44.68 4.24
2111 2854 4.411256 AATTGCCCAATCAATTAGCTGG 57.589 40.909 0.00 0.00 42.82 4.85
2112 2855 1.113788 TGCCCAATCAATTAGCTGGC 58.886 50.000 0.00 0.00 37.90 4.85
2115 2858 2.288640 GCCCAATCAATTAGCTGGCATC 60.289 50.000 0.00 0.00 37.36 3.91
2117 2860 3.005472 CCCAATCAATTAGCTGGCATCAG 59.995 47.826 0.00 0.00 43.64 2.90
2134 2885 2.808919 TCAGCAGCTACTTGACTAGGT 58.191 47.619 0.00 0.00 0.00 3.08
2137 2888 2.003301 GCAGCTACTTGACTAGGTTGC 58.997 52.381 0.00 0.00 35.21 4.17
2146 2897 4.965532 ACTTGACTAGGTTGCATAGATCCT 59.034 41.667 0.00 0.96 0.00 3.24
2154 2905 3.558746 GGTTGCATAGATCCTCATCAGGG 60.559 52.174 0.00 0.00 40.80 4.45
2168 2919 4.290093 TCATCAGGGAGCTATGTAACTGT 58.710 43.478 0.00 0.00 0.00 3.55
2177 2928 8.275040 AGGGAGCTATGTAACTGTAAAATCAAT 58.725 33.333 0.00 0.00 0.00 2.57
2178 2929 8.345565 GGGAGCTATGTAACTGTAAAATCAATG 58.654 37.037 0.00 0.00 0.00 2.82
2190 2941 9.507329 ACTGTAAAATCAATGTTACATGTCTCT 57.493 29.630 0.00 0.00 39.00 3.10
2225 2978 5.371115 TTTCTGGATAAGCAAAAGGTTCG 57.629 39.130 0.00 0.00 0.00 3.95
2240 3004 1.254570 GGTTCGAGCAAACGCGTATAG 59.745 52.381 14.46 6.66 40.29 1.31
2275 3039 2.280708 GCAAATCTGCGCAAACATCATC 59.719 45.455 13.05 0.00 39.20 2.92
2276 3040 3.503891 CAAATCTGCGCAAACATCATCA 58.496 40.909 13.05 0.00 0.00 3.07
2277 3041 4.109766 CAAATCTGCGCAAACATCATCAT 58.890 39.130 13.05 0.00 0.00 2.45
2284 3048 6.038050 TCTGCGCAAACATCATCATATAACAA 59.962 34.615 13.05 0.00 0.00 2.83
2333 3097 8.221928 ACGTAGTTTCATCCAAAGATGGCAAC 62.222 42.308 0.00 6.96 44.99 4.17
2357 3121 1.133823 ACAAACAGGCACACCAGATGA 60.134 47.619 0.00 0.00 39.06 2.92
2361 3125 1.133823 ACAGGCACACCAGATGAAACA 60.134 47.619 0.00 0.00 39.06 2.83
2368 3132 2.224621 ACACCAGATGAAACAGACCAGG 60.225 50.000 0.00 0.00 0.00 4.45
2378 3142 4.263462 TGAAACAGACCAGGCATATTGTCT 60.263 41.667 0.00 0.00 38.56 3.41
2385 3149 4.079253 ACCAGGCATATTGTCTTTCGTTT 58.921 39.130 0.00 0.00 23.66 3.60
2386 3150 5.250200 ACCAGGCATATTGTCTTTCGTTTA 58.750 37.500 0.00 0.00 23.66 2.01
2387 3151 5.708230 ACCAGGCATATTGTCTTTCGTTTAA 59.292 36.000 0.00 0.00 23.66 1.52
2415 3179 7.556844 ACTGACTCGATACAGAAATAACCAAT 58.443 34.615 20.49 0.00 37.54 3.16
2425 3189 9.975218 ATACAGAAATAACCAATAACTCAAGGT 57.025 29.630 0.00 0.00 35.47 3.50
2427 3191 9.143155 ACAGAAATAACCAATAACTCAAGGTTT 57.857 29.630 0.00 0.00 41.33 3.27
2434 3198 7.046292 ACCAATAACTCAAGGTTTAAACACC 57.954 36.000 19.57 4.42 39.17 4.16
2435 3199 6.608002 ACCAATAACTCAAGGTTTAAACACCA 59.392 34.615 19.57 0.22 39.62 4.17
2437 3201 7.982354 CCAATAACTCAAGGTTTAAACACCAAA 59.018 33.333 19.57 0.88 39.62 3.28
2438 3202 8.813282 CAATAACTCAAGGTTTAAACACCAAAC 58.187 33.333 19.57 1.61 39.62 2.93
2439 3203 6.599356 AACTCAAGGTTTAAACACCAAACT 57.401 33.333 19.57 3.92 39.62 2.66
2440 3204 5.961272 ACTCAAGGTTTAAACACCAAACTG 58.039 37.500 19.57 6.06 39.62 3.16
2441 3205 5.712917 ACTCAAGGTTTAAACACCAAACTGA 59.287 36.000 19.57 9.40 39.62 3.41
2442 3206 5.956642 TCAAGGTTTAAACACCAAACTGAC 58.043 37.500 19.57 0.00 39.62 3.51
2443 3207 5.712917 TCAAGGTTTAAACACCAAACTGACT 59.287 36.000 19.57 1.15 39.62 3.41
2444 3208 5.830000 AGGTTTAAACACCAAACTGACTC 57.170 39.130 19.57 0.00 39.62 3.36
2445 3209 5.258051 AGGTTTAAACACCAAACTGACTCA 58.742 37.500 19.57 0.00 39.62 3.41
2446 3210 5.357032 AGGTTTAAACACCAAACTGACTCAG 59.643 40.000 19.57 4.36 39.62 3.35
2447 3211 5.355910 GGTTTAAACACCAAACTGACTCAGA 59.644 40.000 19.57 0.00 36.73 3.27
2448 3212 6.039382 GGTTTAAACACCAAACTGACTCAGAT 59.961 38.462 19.57 0.00 36.73 2.90
2449 3213 7.227910 GGTTTAAACACCAAACTGACTCAGATA 59.772 37.037 19.57 0.00 36.73 1.98
2450 3214 7.724305 TTAAACACCAAACTGACTCAGATAC 57.276 36.000 13.25 0.00 35.18 2.24
2451 3215 5.552870 AACACCAAACTGACTCAGATACT 57.447 39.130 13.25 0.00 35.18 2.12
2452 3216 4.887748 ACACCAAACTGACTCAGATACTG 58.112 43.478 13.25 4.26 35.18 2.74
2453 3217 4.588951 ACACCAAACTGACTCAGATACTGA 59.411 41.667 13.25 0.00 38.25 3.41
2454 3218 5.070446 ACACCAAACTGACTCAGATACTGAA 59.930 40.000 13.25 0.00 40.18 3.02
2455 3219 5.991606 CACCAAACTGACTCAGATACTGAAA 59.008 40.000 13.25 0.00 40.18 2.69
2456 3220 6.652481 CACCAAACTGACTCAGATACTGAAAT 59.348 38.462 13.25 0.00 40.18 2.17
2457 3221 7.819415 CACCAAACTGACTCAGATACTGAAATA 59.181 37.037 13.25 0.00 40.18 1.40
2458 3222 8.375506 ACCAAACTGACTCAGATACTGAAATAA 58.624 33.333 13.25 0.00 40.18 1.40
2459 3223 8.660373 CCAAACTGACTCAGATACTGAAATAAC 58.340 37.037 13.25 0.00 40.18 1.89
2460 3224 8.660373 CAAACTGACTCAGATACTGAAATAACC 58.340 37.037 13.25 0.00 40.18 2.85
2461 3225 7.482169 ACTGACTCAGATACTGAAATAACCA 57.518 36.000 13.25 0.00 40.18 3.67
2462 3226 7.907389 ACTGACTCAGATACTGAAATAACCAA 58.093 34.615 13.25 0.00 40.18 3.67
2463 3227 8.543774 ACTGACTCAGATACTGAAATAACCAAT 58.456 33.333 13.25 0.00 40.18 3.16
2482 3246 8.936070 AACCAATAACTCAAAGTTTAAACACC 57.064 30.769 20.06 0.00 39.51 4.16
2483 3247 8.068892 ACCAATAACTCAAAGTTTAAACACCA 57.931 30.769 20.06 0.77 39.51 4.17
2497 3261 7.221259 AGTTTAAACACCACAAATACGAAAAGC 59.779 33.333 20.06 0.00 0.00 3.51
2503 3267 5.746245 CACCACAAATACGAAAAGCTGAAAA 59.254 36.000 0.00 0.00 0.00 2.29
2512 3276 3.849145 CGAAAAGCTGAAAAACAACGACA 59.151 39.130 0.00 0.00 0.00 4.35
2515 3279 3.951979 AGCTGAAAAACAACGACAGAG 57.048 42.857 0.00 0.00 0.00 3.35
2522 3286 7.173863 TGAAAAACAACGACAGAGACTTATC 57.826 36.000 0.00 0.00 0.00 1.75
2523 3287 6.759356 TGAAAAACAACGACAGAGACTTATCA 59.241 34.615 0.00 0.00 0.00 2.15
2526 3290 6.771188 AACAACGACAGAGACTTATCAAAG 57.229 37.500 0.00 0.00 38.77 2.77
2529 3293 4.724303 ACGACAGAGACTTATCAAAGACG 58.276 43.478 0.00 0.00 36.50 4.18
2531 3295 4.673061 CGACAGAGACTTATCAAAGACGCT 60.673 45.833 0.00 0.00 37.84 5.07
2533 3297 6.268825 ACAGAGACTTATCAAAGACGCTTA 57.731 37.500 0.00 0.00 35.93 3.09
2589 3364 1.136057 CACTCGTCGTCGTCAGATTCA 60.136 52.381 1.33 0.00 38.33 2.57
2631 3406 2.954611 GGCTTGGCGTTCTTCACC 59.045 61.111 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.213799 GCCTCATCTATAATAAACTTGAGAAGG 57.786 37.037 0.00 0.00 32.77 3.46
4 5 9.213799 GGCCTCATCTATAATAAACTTGAGAAG 57.786 37.037 0.00 0.00 32.77 2.85
5 6 8.713971 TGGCCTCATCTATAATAAACTTGAGAA 58.286 33.333 3.32 0.00 32.77 2.87
6 7 8.262601 TGGCCTCATCTATAATAAACTTGAGA 57.737 34.615 3.32 0.00 32.77 3.27
7 8 8.778358 GTTGGCCTCATCTATAATAAACTTGAG 58.222 37.037 3.32 0.00 0.00 3.02
8 9 7.719633 GGTTGGCCTCATCTATAATAAACTTGA 59.280 37.037 3.32 0.00 0.00 3.02
9 10 7.721399 AGGTTGGCCTCATCTATAATAAACTTG 59.279 37.037 3.32 0.00 42.67 3.16
10 11 7.816411 AGGTTGGCCTCATCTATAATAAACTT 58.184 34.615 3.32 0.00 42.67 2.66
11 12 7.394144 AGGTTGGCCTCATCTATAATAAACT 57.606 36.000 3.32 0.00 42.67 2.66
12 13 9.167311 CATAGGTTGGCCTCATCTATAATAAAC 57.833 37.037 3.32 0.00 45.64 2.01
13 14 8.328758 CCATAGGTTGGCCTCATCTATAATAAA 58.671 37.037 3.32 0.00 45.64 1.40
14 15 7.092444 CCCATAGGTTGGCCTCATCTATAATAA 60.092 40.741 3.32 0.00 45.64 1.40
15 16 6.386927 CCCATAGGTTGGCCTCATCTATAATA 59.613 42.308 3.32 0.00 45.64 0.98
16 17 5.192522 CCCATAGGTTGGCCTCATCTATAAT 59.807 44.000 3.32 0.00 45.64 1.28
17 18 4.536090 CCCATAGGTTGGCCTCATCTATAA 59.464 45.833 3.32 0.00 45.64 0.98
18 19 4.104086 CCCATAGGTTGGCCTCATCTATA 58.896 47.826 3.32 0.00 45.64 1.31
19 20 2.915604 CCCATAGGTTGGCCTCATCTAT 59.084 50.000 3.32 3.20 45.64 1.98
20 21 2.338809 CCCATAGGTTGGCCTCATCTA 58.661 52.381 3.32 0.45 45.64 1.98
21 22 1.143813 CCCATAGGTTGGCCTCATCT 58.856 55.000 3.32 0.00 45.64 2.90
22 23 3.733709 CCCATAGGTTGGCCTCATC 57.266 57.895 3.32 0.00 45.64 2.92
33 34 0.474184 CCCCTGCAGTAACCCATAGG 59.526 60.000 13.81 2.82 40.04 2.57
34 35 0.179018 GCCCCTGCAGTAACCCATAG 60.179 60.000 13.81 0.00 37.47 2.23
35 36 0.623324 AGCCCCTGCAGTAACCCATA 60.623 55.000 13.81 0.00 41.13 2.74
36 37 0.623324 TAGCCCCTGCAGTAACCCAT 60.623 55.000 13.81 0.00 41.13 4.00
37 38 0.842905 TTAGCCCCTGCAGTAACCCA 60.843 55.000 13.81 0.00 41.13 4.51
38 39 0.330267 TTTAGCCCCTGCAGTAACCC 59.670 55.000 13.81 0.00 41.13 4.11
39 40 1.271707 TGTTTAGCCCCTGCAGTAACC 60.272 52.381 13.81 0.00 41.13 2.85
40 41 2.194201 TGTTTAGCCCCTGCAGTAAC 57.806 50.000 13.81 7.40 41.13 2.50
41 42 2.961531 TTGTTTAGCCCCTGCAGTAA 57.038 45.000 13.81 1.44 41.13 2.24
42 43 3.449746 AATTGTTTAGCCCCTGCAGTA 57.550 42.857 13.81 0.00 41.13 2.74
43 44 2.309136 AATTGTTTAGCCCCTGCAGT 57.691 45.000 13.81 0.00 41.13 4.40
44 45 2.689983 CCTAATTGTTTAGCCCCTGCAG 59.310 50.000 6.78 6.78 41.13 4.41
45 46 2.622977 CCCTAATTGTTTAGCCCCTGCA 60.623 50.000 0.00 0.00 41.13 4.41
46 47 2.031870 CCCTAATTGTTTAGCCCCTGC 58.968 52.381 0.00 0.00 34.62 4.85
47 48 3.662759 TCCCTAATTGTTTAGCCCCTG 57.337 47.619 0.00 0.00 34.62 4.45
48 49 4.685513 TTTCCCTAATTGTTTAGCCCCT 57.314 40.909 0.00 0.00 34.62 4.79
49 50 5.950544 ATTTTCCCTAATTGTTTAGCCCC 57.049 39.130 0.00 0.00 34.62 5.80
58 59 8.208718 TCACGAGATACAATTTTCCCTAATTG 57.791 34.615 7.36 7.36 46.20 2.32
59 60 8.047310 ACTCACGAGATACAATTTTCCCTAATT 58.953 33.333 0.00 0.00 0.00 1.40
60 61 7.565680 ACTCACGAGATACAATTTTCCCTAAT 58.434 34.615 0.00 0.00 0.00 1.73
61 62 6.942976 ACTCACGAGATACAATTTTCCCTAA 58.057 36.000 0.00 0.00 0.00 2.69
62 63 6.540438 ACTCACGAGATACAATTTTCCCTA 57.460 37.500 0.00 0.00 0.00 3.53
63 64 5.422214 ACTCACGAGATACAATTTTCCCT 57.578 39.130 0.00 0.00 0.00 4.20
64 65 7.787725 ATTACTCACGAGATACAATTTTCCC 57.212 36.000 0.00 0.00 0.00 3.97
65 66 8.665685 ACAATTACTCACGAGATACAATTTTCC 58.334 33.333 0.00 0.00 0.00 3.13
66 67 9.690434 GACAATTACTCACGAGATACAATTTTC 57.310 33.333 0.00 1.44 0.00 2.29
67 68 9.214957 TGACAATTACTCACGAGATACAATTTT 57.785 29.630 0.00 0.00 0.00 1.82
68 69 8.771920 TGACAATTACTCACGAGATACAATTT 57.228 30.769 0.00 0.00 0.00 1.82
69 70 8.820933 CATGACAATTACTCACGAGATACAATT 58.179 33.333 0.00 0.00 0.00 2.32
70 71 7.042456 GCATGACAATTACTCACGAGATACAAT 60.042 37.037 0.00 0.00 0.00 2.71
71 72 6.255670 GCATGACAATTACTCACGAGATACAA 59.744 38.462 0.00 0.00 0.00 2.41
72 73 5.748630 GCATGACAATTACTCACGAGATACA 59.251 40.000 0.00 0.00 0.00 2.29
73 74 5.175856 GGCATGACAATTACTCACGAGATAC 59.824 44.000 0.00 0.00 0.00 2.24
74 75 5.289595 GGCATGACAATTACTCACGAGATA 58.710 41.667 0.00 0.00 0.00 1.98
75 76 4.122776 GGCATGACAATTACTCACGAGAT 58.877 43.478 0.00 0.00 0.00 2.75
76 77 3.521560 GGCATGACAATTACTCACGAGA 58.478 45.455 0.00 0.00 0.00 4.04
77 78 2.282555 CGGCATGACAATTACTCACGAG 59.717 50.000 0.00 0.00 0.00 4.18
78 79 2.267426 CGGCATGACAATTACTCACGA 58.733 47.619 0.00 0.00 0.00 4.35
79 80 1.999735 ACGGCATGACAATTACTCACG 59.000 47.619 0.00 0.00 0.00 4.35
80 81 3.308866 GGTACGGCATGACAATTACTCAC 59.691 47.826 0.00 0.00 0.00 3.51
81 82 3.196901 AGGTACGGCATGACAATTACTCA 59.803 43.478 0.00 0.00 0.00 3.41
82 83 3.793559 AGGTACGGCATGACAATTACTC 58.206 45.455 0.00 0.00 0.00 2.59
83 84 3.737047 CGAGGTACGGCATGACAATTACT 60.737 47.826 0.00 0.00 38.46 2.24
84 85 2.538449 CGAGGTACGGCATGACAATTAC 59.462 50.000 0.00 0.00 38.46 1.89
85 86 2.816689 CGAGGTACGGCATGACAATTA 58.183 47.619 0.00 0.00 38.46 1.40
86 87 1.651987 CGAGGTACGGCATGACAATT 58.348 50.000 0.00 0.00 38.46 2.32
87 88 3.362581 CGAGGTACGGCATGACAAT 57.637 52.632 0.00 0.00 38.46 2.71
88 89 4.902308 CGAGGTACGGCATGACAA 57.098 55.556 0.00 0.00 38.46 3.18
97 98 0.244450 TTACACAAGGCCGAGGTACG 59.756 55.000 0.00 0.00 42.18 3.67
98 99 1.274447 AGTTACACAAGGCCGAGGTAC 59.726 52.381 0.00 0.00 0.00 3.34
99 100 1.547372 GAGTTACACAAGGCCGAGGTA 59.453 52.381 0.00 0.00 0.00 3.08
100 101 0.320697 GAGTTACACAAGGCCGAGGT 59.679 55.000 0.00 0.00 0.00 3.85
101 102 0.608640 AGAGTTACACAAGGCCGAGG 59.391 55.000 0.00 0.00 0.00 4.63
102 103 2.230508 TGTAGAGTTACACAAGGCCGAG 59.769 50.000 0.00 0.00 34.91 4.63
103 104 2.241160 TGTAGAGTTACACAAGGCCGA 58.759 47.619 0.00 0.00 34.91 5.54
104 105 2.736144 TGTAGAGTTACACAAGGCCG 57.264 50.000 0.00 0.00 34.91 6.13
105 106 4.820173 AGTTTTGTAGAGTTACACAAGGCC 59.180 41.667 0.00 0.00 39.44 5.19
106 107 5.758784 AGAGTTTTGTAGAGTTACACAAGGC 59.241 40.000 0.00 0.00 39.44 4.35
107 108 9.490379 AATAGAGTTTTGTAGAGTTACACAAGG 57.510 33.333 0.00 0.00 39.44 3.61
110 111 9.909644 GAGAATAGAGTTTTGTAGAGTTACACA 57.090 33.333 0.00 0.00 39.44 3.72
111 112 9.356433 GGAGAATAGAGTTTTGTAGAGTTACAC 57.644 37.037 0.00 0.00 39.44 2.90
112 113 9.310449 AGGAGAATAGAGTTTTGTAGAGTTACA 57.690 33.333 0.00 0.00 38.00 2.41
113 114 9.791820 GAGGAGAATAGAGTTTTGTAGAGTTAC 57.208 37.037 0.00 0.00 0.00 2.50
114 115 9.756571 AGAGGAGAATAGAGTTTTGTAGAGTTA 57.243 33.333 0.00 0.00 0.00 2.24
115 116 8.658840 AGAGGAGAATAGAGTTTTGTAGAGTT 57.341 34.615 0.00 0.00 0.00 3.01
116 117 9.181061 GTAGAGGAGAATAGAGTTTTGTAGAGT 57.819 37.037 0.00 0.00 0.00 3.24
117 118 9.403583 AGTAGAGGAGAATAGAGTTTTGTAGAG 57.596 37.037 0.00 0.00 0.00 2.43
118 119 9.756571 AAGTAGAGGAGAATAGAGTTTTGTAGA 57.243 33.333 0.00 0.00 0.00 2.59
135 136 7.914427 TTGCCTCATCTATTAAAGTAGAGGA 57.086 36.000 19.29 12.46 43.78 3.71
136 137 9.566432 AATTTGCCTCATCTATTAAAGTAGAGG 57.434 33.333 0.00 0.00 43.84 3.69
215 216 1.065418 CCCTTTTATCCAGCTGTCGGT 60.065 52.381 13.81 0.00 0.00 4.69
223 224 3.439129 GGTTTGTCGTCCCTTTTATCCAG 59.561 47.826 0.00 0.00 0.00 3.86
256 257 2.549754 GGCAGTATTCGTACTACGCCTA 59.450 50.000 3.57 0.00 42.21 3.93
261 262 3.819902 AGCTAGGGCAGTATTCGTACTAC 59.180 47.826 0.00 0.00 41.70 2.73
269 270 3.330126 TCCACTAGCTAGGGCAGTATT 57.670 47.619 24.35 0.00 41.70 1.89
270 271 3.551635 ATCCACTAGCTAGGGCAGTAT 57.448 47.619 24.35 8.79 41.70 2.12
299 300 2.759535 TCTCTTCCTCATCAGCTCACAG 59.240 50.000 0.00 0.00 0.00 3.66
310 311 4.836825 CTTGCCACTAATTCTCTTCCTCA 58.163 43.478 0.00 0.00 0.00 3.86
312 313 3.265479 AGCTTGCCACTAATTCTCTTCCT 59.735 43.478 0.00 0.00 0.00 3.36
314 315 3.181502 GCAGCTTGCCACTAATTCTCTTC 60.182 47.826 0.00 0.00 37.42 2.87
315 316 2.751806 GCAGCTTGCCACTAATTCTCTT 59.248 45.455 0.00 0.00 37.42 2.85
376 907 1.923395 TTACTGTGGCCCAGGGGAG 60.923 63.158 20.97 0.00 46.06 4.30
414 945 5.478332 CCTTCCAGAAAGAGCAAGGTAATTT 59.522 40.000 0.00 0.00 37.12 1.82
424 956 1.447945 GAGCACCTTCCAGAAAGAGC 58.552 55.000 0.00 0.00 37.12 4.09
501 1033 2.422597 TGATCAGCGTTGTTAGGTTGG 58.577 47.619 0.00 0.00 0.00 3.77
506 1038 3.241553 CGAGACATGATCAGCGTTGTTAG 59.758 47.826 0.00 0.00 0.00 2.34
507 1039 3.179048 CGAGACATGATCAGCGTTGTTA 58.821 45.455 0.00 0.00 0.00 2.41
508 1040 1.995484 CGAGACATGATCAGCGTTGTT 59.005 47.619 0.00 0.00 0.00 2.83
509 1041 1.067565 ACGAGACATGATCAGCGTTGT 60.068 47.619 0.00 0.00 37.32 3.32
511 1043 2.163613 TGTACGAGACATGATCAGCGTT 59.836 45.455 0.00 0.00 40.00 4.84
512 1044 1.743394 TGTACGAGACATGATCAGCGT 59.257 47.619 0.00 8.33 41.55 5.07
513 1045 2.223363 ACTGTACGAGACATGATCAGCG 60.223 50.000 0.00 2.59 37.45 5.18
514 1046 3.367607 GACTGTACGAGACATGATCAGC 58.632 50.000 0.00 0.00 37.45 4.26
532 1074 3.540314 ACTCTACCGATCAGTACGACT 57.460 47.619 0.00 0.00 0.00 4.18
533 1075 4.025313 GGTTACTCTACCGATCAGTACGAC 60.025 50.000 0.00 0.00 0.00 4.34
559 1101 6.092122 CGAAAGAGCAATACTGTAAACATGGA 59.908 38.462 0.00 0.00 0.00 3.41
584 1126 1.080025 GGGTGTAGACGTGTGGCTC 60.080 63.158 0.00 0.00 0.00 4.70
593 1135 4.394729 TGAATTGTCAAAGGGGTGTAGAC 58.605 43.478 0.00 0.00 0.00 2.59
594 1136 4.715534 TGAATTGTCAAAGGGGTGTAGA 57.284 40.909 0.00 0.00 0.00 2.59
613 1170 1.066215 CATGTCCGGGTGAGTGAATGA 60.066 52.381 0.00 0.00 0.00 2.57
614 1171 1.372582 CATGTCCGGGTGAGTGAATG 58.627 55.000 0.00 0.00 0.00 2.67
615 1172 0.253044 CCATGTCCGGGTGAGTGAAT 59.747 55.000 0.00 0.00 0.00 2.57
616 1173 1.676968 CCATGTCCGGGTGAGTGAA 59.323 57.895 0.00 0.00 0.00 3.18
617 1174 2.954684 GCCATGTCCGGGTGAGTGA 61.955 63.158 0.00 0.00 0.00 3.41
618 1175 2.436646 GCCATGTCCGGGTGAGTG 60.437 66.667 0.00 0.00 0.00 3.51
619 1176 2.607750 AGCCATGTCCGGGTGAGT 60.608 61.111 0.00 0.00 34.81 3.41
796 1373 4.620609 TGCAACGTTGTTTTATCATCATGC 59.379 37.500 27.78 10.84 0.00 4.06
799 1376 6.006759 TCATGCAACGTTGTTTTATCATCA 57.993 33.333 27.78 14.75 0.00 3.07
800 1377 6.506827 GCATCATGCAACGTTGTTTTATCATC 60.507 38.462 27.78 9.63 44.26 2.92
802 1379 4.620609 GCATCATGCAACGTTGTTTTATCA 59.379 37.500 27.78 16.79 44.26 2.15
803 1380 5.117307 GCATCATGCAACGTTGTTTTATC 57.883 39.130 27.78 11.72 44.26 1.75
828 1405 0.831307 AGATTAGCGGGGGTCTTGAC 59.169 55.000 0.00 0.00 0.00 3.18
839 1416 2.288702 CCAGACTGGGATCAGATTAGCG 60.289 54.545 14.26 0.00 43.49 4.26
853 1432 0.246086 GGACTGAGACTGCCAGACTG 59.754 60.000 0.34 0.00 35.69 3.51
854 1433 0.902516 GGGACTGAGACTGCCAGACT 60.903 60.000 0.00 0.00 35.69 3.24
855 1434 1.188219 TGGGACTGAGACTGCCAGAC 61.188 60.000 0.00 0.00 35.69 3.51
856 1435 0.471780 TTGGGACTGAGACTGCCAGA 60.472 55.000 0.00 0.00 35.69 3.86
857 1436 0.617413 ATTGGGACTGAGACTGCCAG 59.383 55.000 0.00 0.00 37.64 4.85
858 1437 0.615331 GATTGGGACTGAGACTGCCA 59.385 55.000 0.00 0.00 0.00 4.92
859 1438 0.107459 GGATTGGGACTGAGACTGCC 60.107 60.000 0.00 0.00 0.00 4.85
860 1439 0.107459 GGGATTGGGACTGAGACTGC 60.107 60.000 0.00 0.00 0.00 4.40
868 1447 0.991920 AACGACATGGGATTGGGACT 59.008 50.000 0.00 0.00 0.00 3.85
901 1487 4.260538 GCTTAGCTTAGCTTGCACATACTG 60.261 45.833 17.24 0.00 40.44 2.74
929 1562 2.181021 CTACAGGACCCACGTCGC 59.819 66.667 0.00 0.00 40.17 5.19
987 1620 3.526534 GAAGAGAGTGGCCTGTGATTAC 58.473 50.000 3.32 0.00 0.00 1.89
1001 1634 3.132481 GAGGCGAGGGCGAAGAGAG 62.132 68.421 0.00 0.00 41.24 3.20
1002 1635 3.141488 GAGGCGAGGGCGAAGAGA 61.141 66.667 0.00 0.00 41.24 3.10
1003 1636 4.214327 GGAGGCGAGGGCGAAGAG 62.214 72.222 0.00 0.00 41.24 2.85
1033 1666 3.224269 GCTAGCTAGCTAGGTGTTAGGT 58.776 50.000 39.60 11.14 45.62 3.08
1034 1667 3.926821 GCTAGCTAGCTAGGTGTTAGG 57.073 52.381 39.60 21.63 45.62 2.69
1069 1706 3.792053 CTCGGCGGGGTACATGCTC 62.792 68.421 7.21 0.00 0.00 4.26
1192 1835 2.514824 GCCCGAGGAACCATGAGC 60.515 66.667 0.00 0.00 0.00 4.26
1196 1839 4.143333 CGACGCCCGAGGAACCAT 62.143 66.667 0.00 0.00 41.76 3.55
1206 1849 4.509737 GCTGGTAGGACGACGCCC 62.510 72.222 0.00 0.00 0.00 6.13
1211 1854 2.970639 GTGCTGCTGGTAGGACGA 59.029 61.111 0.00 0.00 29.37 4.20
1273 1931 3.148279 CCGAACGGGAGGAGGAGG 61.148 72.222 5.25 0.00 38.47 4.30
1580 2238 2.359230 GAGCCGCTCCTGCAGTTT 60.359 61.111 13.81 0.00 39.64 2.66
1644 2302 3.491652 GCTCAACTTCTCCCGCGC 61.492 66.667 0.00 0.00 0.00 6.86
1665 2323 2.619446 ATGTCACCCTGGGCAGCAT 61.619 57.895 14.08 11.40 0.00 3.79
1681 2339 6.116680 TCGATCATCATCTAGTCGATCATG 57.883 41.667 0.00 0.00 36.52 3.07
1753 2411 2.887568 GTCCCACATCGAGCAGCG 60.888 66.667 0.00 0.00 42.69 5.18
1754 2412 2.887568 CGTCCCACATCGAGCAGC 60.888 66.667 0.00 0.00 0.00 5.25
1755 2413 2.887568 GCGTCCCACATCGAGCAG 60.888 66.667 0.00 0.00 0.00 4.24
1761 2419 1.670811 CTAACAATGGCGTCCCACATC 59.329 52.381 0.00 0.00 45.77 3.06
1834 2492 7.756722 CAGCATTTTCTTATTTGGAACCACTAG 59.243 37.037 0.00 0.00 0.00 2.57
1835 2493 7.309744 CCAGCATTTTCTTATTTGGAACCACTA 60.310 37.037 0.00 0.00 0.00 2.74
1836 2494 6.458210 CAGCATTTTCTTATTTGGAACCACT 58.542 36.000 0.00 0.00 0.00 4.00
1839 2497 4.631377 GCCAGCATTTTCTTATTTGGAACC 59.369 41.667 0.00 0.00 0.00 3.62
1858 2516 0.615331 AGGTCACCACTACATGCCAG 59.385 55.000 0.00 0.00 0.00 4.85
1871 2529 5.774498 ATGAAAGAAACTGGAAAGGTCAC 57.226 39.130 0.00 0.00 0.00 3.67
1875 2533 9.018582 AGAAGATTATGAAAGAAACTGGAAAGG 57.981 33.333 0.00 0.00 0.00 3.11
1876 2534 9.837525 CAGAAGATTATGAAAGAAACTGGAAAG 57.162 33.333 0.00 0.00 0.00 2.62
1878 2536 8.924511 ACAGAAGATTATGAAAGAAACTGGAA 57.075 30.769 0.00 0.00 0.00 3.53
1908 2566 6.038997 AGTTCCTCCTTTGTACTACATGAC 57.961 41.667 0.00 0.00 0.00 3.06
1912 2570 6.464222 CATGAAGTTCCTCCTTTGTACTACA 58.536 40.000 0.00 0.00 0.00 2.74
1913 2571 5.351740 GCATGAAGTTCCTCCTTTGTACTAC 59.648 44.000 0.00 0.00 0.00 2.73
1915 2573 4.042187 AGCATGAAGTTCCTCCTTTGTACT 59.958 41.667 0.00 0.00 0.00 2.73
1944 2680 5.320277 CATGGCCCTTGGGAAAAATAAAAA 58.680 37.500 10.36 0.00 0.00 1.94
1946 2682 3.265479 CCATGGCCCTTGGGAAAAATAAA 59.735 43.478 10.36 0.00 0.00 1.40
1947 2683 2.843113 CCATGGCCCTTGGGAAAAATAA 59.157 45.455 10.36 0.00 0.00 1.40
1948 2684 2.476199 CCATGGCCCTTGGGAAAAATA 58.524 47.619 10.36 0.00 0.00 1.40
1949 2685 1.288188 CCATGGCCCTTGGGAAAAAT 58.712 50.000 10.36 0.00 0.00 1.82
1950 2686 1.487850 GCCATGGCCCTTGGGAAAAA 61.488 55.000 27.24 0.00 34.66 1.94
1951 2687 1.917787 GCCATGGCCCTTGGGAAAA 60.918 57.895 27.24 0.00 34.66 2.29
1952 2688 2.284552 GCCATGGCCCTTGGGAAA 60.285 61.111 27.24 0.00 34.66 3.13
1953 2689 2.686246 TTTGCCATGGCCCTTGGGAA 62.686 55.000 33.44 20.52 42.06 3.97
1954 2690 2.686246 TTTTGCCATGGCCCTTGGGA 62.686 55.000 33.44 16.16 41.09 4.37
1955 2691 1.776975 TTTTTGCCATGGCCCTTGGG 61.777 55.000 33.44 8.97 41.09 4.12
1978 2714 2.097629 TGCGGAGATATATAGCACTCGC 59.902 50.000 18.66 18.66 38.99 5.03
1979 2715 4.357018 TTGCGGAGATATATAGCACTCG 57.643 45.455 0.07 2.56 37.57 4.18
1980 2716 6.254589 GTGATTTGCGGAGATATATAGCACTC 59.745 42.308 0.07 3.80 37.57 3.51
2042 2778 7.826690 TGGGTAGATTATCTTTGTTTTTCTGC 58.173 34.615 0.00 0.00 0.00 4.26
2049 2791 6.636454 TCACCTGGGTAGATTATCTTTGTT 57.364 37.500 0.00 0.00 0.00 2.83
2064 2806 1.747355 GCTGTCATGAAATCACCTGGG 59.253 52.381 0.00 0.00 0.00 4.45
2108 2851 1.015109 CAAGTAGCTGCTGATGCCAG 58.985 55.000 13.43 0.00 43.22 4.85
2109 2852 0.614812 TCAAGTAGCTGCTGATGCCA 59.385 50.000 13.43 0.00 38.71 4.92
2110 2853 1.012841 GTCAAGTAGCTGCTGATGCC 58.987 55.000 13.43 0.00 38.71 4.40
2111 2854 2.021355 AGTCAAGTAGCTGCTGATGC 57.979 50.000 13.43 5.25 40.20 3.91
2112 2855 3.131933 ACCTAGTCAAGTAGCTGCTGATG 59.868 47.826 13.43 8.50 0.00 3.07
2115 2858 3.257393 CAACCTAGTCAAGTAGCTGCTG 58.743 50.000 13.43 0.00 0.00 4.41
2117 2860 2.003301 GCAACCTAGTCAAGTAGCTGC 58.997 52.381 0.00 0.00 0.00 5.25
2118 2861 3.319137 TGCAACCTAGTCAAGTAGCTG 57.681 47.619 0.00 0.00 0.00 4.24
2119 2862 4.956700 TCTATGCAACCTAGTCAAGTAGCT 59.043 41.667 0.00 0.00 0.00 3.32
2134 2885 3.581770 CTCCCTGATGAGGATCTATGCAA 59.418 47.826 0.00 0.00 42.93 4.08
2137 2888 3.443052 AGCTCCCTGATGAGGATCTATG 58.557 50.000 0.00 0.00 42.93 2.23
2146 2897 4.290093 ACAGTTACATAGCTCCCTGATGA 58.710 43.478 0.00 0.00 0.00 2.92
2183 2934 7.551974 CCAGAAATCTCATGTTACAAGAGACAT 59.448 37.037 20.28 12.97 40.24 3.06
2190 2941 7.828717 TGCTTATCCAGAAATCTCATGTTACAA 59.171 33.333 0.00 0.00 0.00 2.41
2195 2948 7.147949 CCTTTTGCTTATCCAGAAATCTCATGT 60.148 37.037 0.00 0.00 0.00 3.21
2225 2978 4.446857 TTTATGCTATACGCGTTTGCTC 57.553 40.909 20.78 4.04 43.27 4.26
2321 3085 5.447548 CCTGTTTGTTTTGTTGCCATCTTTG 60.448 40.000 0.00 0.00 0.00 2.77
2333 3097 2.094286 TCTGGTGTGCCTGTTTGTTTTG 60.094 45.455 0.00 0.00 35.49 2.44
2357 3121 4.307032 AGACAATATGCCTGGTCTGTTT 57.693 40.909 0.00 0.00 39.04 2.83
2361 3125 3.055094 ACGAAAGACAATATGCCTGGTCT 60.055 43.478 0.00 0.00 42.08 3.85
2368 3132 9.982291 TCAGTTATTAAACGAAAGACAATATGC 57.018 29.630 0.00 0.00 40.73 3.14
2378 3142 8.969121 TGTATCGAGTCAGTTATTAAACGAAA 57.031 30.769 0.00 0.00 40.73 3.46
2386 3150 9.530633 GGTTATTTCTGTATCGAGTCAGTTATT 57.469 33.333 15.79 7.67 33.89 1.40
2387 3151 8.692710 TGGTTATTTCTGTATCGAGTCAGTTAT 58.307 33.333 15.79 12.98 33.89 1.89
2415 3179 7.393796 TCAGTTTGGTGTTTAAACCTTGAGTTA 59.606 33.333 15.59 0.00 41.16 2.24
2423 3187 5.355910 TCTGAGTCAGTTTGGTGTTTAAACC 59.644 40.000 19.53 2.53 38.47 3.27
2425 3189 7.990886 AGTATCTGAGTCAGTTTGGTGTTTAAA 59.009 33.333 19.53 0.00 32.61 1.52
2427 3191 6.929049 CAGTATCTGAGTCAGTTTGGTGTTTA 59.071 38.462 19.53 0.00 32.44 2.01
2428 3192 5.760253 CAGTATCTGAGTCAGTTTGGTGTTT 59.240 40.000 19.53 0.00 32.44 2.83
2431 3195 5.139435 TCAGTATCTGAGTCAGTTTGGTG 57.861 43.478 19.53 11.69 35.39 4.17
2432 3196 5.808366 TTCAGTATCTGAGTCAGTTTGGT 57.192 39.130 19.53 5.28 41.75 3.67
2433 3197 8.660373 GTTATTTCAGTATCTGAGTCAGTTTGG 58.340 37.037 19.53 7.48 41.75 3.28
2434 3198 8.660373 GGTTATTTCAGTATCTGAGTCAGTTTG 58.340 37.037 19.53 13.02 41.75 2.93
2435 3199 8.375506 TGGTTATTTCAGTATCTGAGTCAGTTT 58.624 33.333 19.53 11.09 41.75 2.66
2437 3201 7.482169 TGGTTATTTCAGTATCTGAGTCAGT 57.518 36.000 19.53 9.79 41.75 3.41
2438 3202 8.954950 ATTGGTTATTTCAGTATCTGAGTCAG 57.045 34.615 14.36 14.36 41.75 3.51
2457 3221 8.532819 TGGTGTTTAAACTTTGAGTTATTGGTT 58.467 29.630 18.72 0.00 37.47 3.67
2458 3222 7.977293 GTGGTGTTTAAACTTTGAGTTATTGGT 59.023 33.333 18.72 0.00 37.47 3.67
2459 3223 7.976734 TGTGGTGTTTAAACTTTGAGTTATTGG 59.023 33.333 18.72 0.00 37.47 3.16
2460 3224 8.918961 TGTGGTGTTTAAACTTTGAGTTATTG 57.081 30.769 18.72 0.00 37.47 1.90
2461 3225 9.930693 TTTGTGGTGTTTAAACTTTGAGTTATT 57.069 25.926 18.72 0.00 37.47 1.40
2464 3228 9.361315 GTATTTGTGGTGTTTAAACTTTGAGTT 57.639 29.630 18.72 1.93 40.80 3.01
2465 3229 7.698970 CGTATTTGTGGTGTTTAAACTTTGAGT 59.301 33.333 18.72 2.37 0.00 3.41
2466 3230 7.911205 TCGTATTTGTGGTGTTTAAACTTTGAG 59.089 33.333 18.72 0.64 0.00 3.02
2467 3231 7.759465 TCGTATTTGTGGTGTTTAAACTTTGA 58.241 30.769 18.72 0.00 0.00 2.69
2468 3232 7.972623 TCGTATTTGTGGTGTTTAAACTTTG 57.027 32.000 18.72 0.00 0.00 2.77
2469 3233 8.983307 TTTCGTATTTGTGGTGTTTAAACTTT 57.017 26.923 18.72 0.00 0.00 2.66
2470 3234 8.983307 TTTTCGTATTTGTGGTGTTTAAACTT 57.017 26.923 18.72 0.00 0.00 2.66
2471 3235 7.221259 GCTTTTCGTATTTGTGGTGTTTAAACT 59.779 33.333 18.72 0.00 0.00 2.66
2472 3236 7.221259 AGCTTTTCGTATTTGTGGTGTTTAAAC 59.779 33.333 11.54 11.54 0.00 2.01
2473 3237 7.221067 CAGCTTTTCGTATTTGTGGTGTTTAAA 59.779 33.333 0.00 0.00 0.00 1.52
2474 3238 6.693545 CAGCTTTTCGTATTTGTGGTGTTTAA 59.306 34.615 0.00 0.00 0.00 1.52
2475 3239 6.038382 TCAGCTTTTCGTATTTGTGGTGTTTA 59.962 34.615 0.00 0.00 0.00 2.01
2476 3240 5.040635 CAGCTTTTCGTATTTGTGGTGTTT 58.959 37.500 0.00 0.00 0.00 2.83
2477 3241 4.336993 TCAGCTTTTCGTATTTGTGGTGTT 59.663 37.500 0.00 0.00 0.00 3.32
2478 3242 3.880490 TCAGCTTTTCGTATTTGTGGTGT 59.120 39.130 0.00 0.00 0.00 4.16
2479 3243 4.481930 TCAGCTTTTCGTATTTGTGGTG 57.518 40.909 0.00 0.00 0.00 4.17
2480 3244 5.508200 TTTCAGCTTTTCGTATTTGTGGT 57.492 34.783 0.00 0.00 0.00 4.16
2481 3245 6.254589 TGTTTTTCAGCTTTTCGTATTTGTGG 59.745 34.615 0.00 0.00 0.00 4.17
2482 3246 7.215696 TGTTTTTCAGCTTTTCGTATTTGTG 57.784 32.000 0.00 0.00 0.00 3.33
2483 3247 7.462200 CGTTGTTTTTCAGCTTTTCGTATTTGT 60.462 33.333 0.00 0.00 0.00 2.83
2497 3261 5.470845 AAGTCTCTGTCGTTGTTTTTCAG 57.529 39.130 0.00 0.00 0.00 3.02
2503 3267 6.421202 GTCTTTGATAAGTCTCTGTCGTTGTT 59.579 38.462 0.00 0.00 32.98 2.83
2512 3276 6.518208 ACTAAGCGTCTTTGATAAGTCTCT 57.482 37.500 7.69 0.00 32.98 3.10
2515 3279 7.856894 CCTACTACTAAGCGTCTTTGATAAGTC 59.143 40.741 7.69 0.00 32.98 3.01
2522 3286 4.421948 CACCCTACTACTAAGCGTCTTTG 58.578 47.826 0.00 0.00 0.00 2.77
2523 3287 3.446516 CCACCCTACTACTAAGCGTCTTT 59.553 47.826 0.00 0.00 0.00 2.52
2526 3290 2.373224 ACCACCCTACTACTAAGCGTC 58.627 52.381 0.00 0.00 0.00 5.19
2529 3293 3.117360 TCCCTACCACCCTACTACTAAGC 60.117 52.174 0.00 0.00 0.00 3.09
2531 3295 5.691167 CGATTCCCTACCACCCTACTACTAA 60.691 48.000 0.00 0.00 0.00 2.24
2533 3297 3.436180 CGATTCCCTACCACCCTACTACT 60.436 52.174 0.00 0.00 0.00 2.57
2631 3406 1.672356 CGGCAAGAACTCCCAGGTG 60.672 63.158 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.