Multiple sequence alignment - TraesCS6A01G286600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G286600 chr6A 100.000 7487 0 0 1 7487 518781008 518788494 0.000000e+00 13826.0
1 TraesCS6A01G286600 chr6A 94.521 73 4 0 4553 4625 460643362 460643434 6.140000e-21 113.0
2 TraesCS6A01G286600 chr6D 94.468 3344 89 28 4177 7487 377341296 377344576 0.000000e+00 5062.0
3 TraesCS6A01G286600 chr6D 97.113 2182 46 9 2009 4176 377339156 377341334 0.000000e+00 3664.0
4 TraesCS6A01G286600 chr6D 88.518 1498 84 27 540 1975 377337687 377339158 0.000000e+00 1733.0
5 TraesCS6A01G286600 chr6D 85.214 886 88 28 2483 3349 21724300 21725161 0.000000e+00 870.0
6 TraesCS6A01G286600 chr6D 91.923 260 18 3 2172 2428 380024082 380023823 1.990000e-95 361.0
7 TraesCS6A01G286600 chr6D 81.841 402 37 18 2640 3033 380023801 380023428 9.440000e-79 305.0
8 TraesCS6A01G286600 chr6D 88.172 93 8 3 449 539 377337553 377337644 2.860000e-19 108.0
9 TraesCS6A01G286600 chr6B 95.091 2139 52 22 2057 4176 563481296 563483400 0.000000e+00 3319.0
10 TraesCS6A01G286600 chr6B 94.410 1771 76 12 4890 6642 563484286 563486051 0.000000e+00 2700.0
11 TraesCS6A01G286600 chr6B 89.681 1192 68 16 805 1975 563480111 563481268 0.000000e+00 1469.0
12 TraesCS6A01G286600 chr6B 95.330 364 15 1 4177 4538 563483362 563483725 1.810000e-160 577.0
13 TraesCS6A01G286600 chr6B 96.633 297 9 1 4599 4894 563483735 563484031 6.750000e-135 492.0
14 TraesCS6A01G286600 chr6B 90.066 302 26 4 2130 2428 566335811 566336111 9.110000e-104 388.0
15 TraesCS6A01G286600 chr6B 90.040 251 25 0 1 251 563476283 563476533 7.240000e-85 326.0
16 TraesCS6A01G286600 chr6B 82.517 286 34 5 7217 7487 563487342 563487626 3.490000e-58 237.0
17 TraesCS6A01G286600 chr6B 80.531 226 23 11 319 542 563476902 563477108 3.620000e-33 154.0
18 TraesCS6A01G286600 chr4A 85.457 887 95 19 2480 3349 716987514 716988383 0.000000e+00 893.0
19 TraesCS6A01G286600 chr5A 83.422 941 100 35 2424 3351 578496196 578497093 0.000000e+00 822.0
20 TraesCS6A01G286600 chr1A 83.214 840 83 31 2523 3350 227174381 227175174 0.000000e+00 717.0
21 TraesCS6A01G286600 chr1A 93.243 74 2 2 4555 4625 454330132 454330205 1.030000e-18 106.0
22 TraesCS6A01G286600 chr2D 84.934 531 46 18 2832 3350 177323337 177322829 2.410000e-139 507.0
23 TraesCS6A01G286600 chr2D 80.924 498 56 18 2360 2826 177346261 177345772 2.570000e-94 357.0
24 TraesCS6A01G286600 chr3D 83.598 189 26 5 320 507 132267888 132268072 9.990000e-39 172.0
25 TraesCS6A01G286600 chr3D 93.243 74 3 2 4552 4625 400740655 400740584 2.860000e-19 108.0
26 TraesCS6A01G286600 chr3D 94.366 71 3 1 4556 4626 400740584 400740653 2.860000e-19 108.0
27 TraesCS6A01G286600 chr3D 94.286 35 2 0 1964 1998 22679050 22679084 4.000000e-03 54.7
28 TraesCS6A01G286600 chr3D 96.875 32 1 0 1967 1998 22767905 22767874 4.000000e-03 54.7
29 TraesCS6A01G286600 chr5D 87.786 131 16 0 319 449 390261099 390260969 3.620000e-33 154.0
30 TraesCS6A01G286600 chr5B 92.045 88 7 0 2902 2989 619097440 619097353 2.840000e-24 124.0
31 TraesCS6A01G286600 chr5B 92.045 88 7 0 2902 2989 619121630 619121543 2.840000e-24 124.0
32 TraesCS6A01G286600 chr1B 94.444 72 4 0 4554 4625 132296712 132296783 2.210000e-20 111.0
33 TraesCS6A01G286600 chrUn 93.056 72 3 1 4556 4625 31324869 31324798 3.700000e-18 104.0
34 TraesCS6A01G286600 chr7D 91.026 78 2 4 4554 4626 447760509 447760432 4.780000e-17 100.0
35 TraesCS6A01G286600 chr7D 90.541 74 4 2 4555 4625 615904268 615904341 2.220000e-15 95.3
36 TraesCS6A01G286600 chr7D 100.000 28 0 0 1971 1998 133236545 133236518 1.400000e-02 52.8
37 TraesCS6A01G286600 chr2A 81.053 95 16 2 127 220 726567140 726567233 2.900000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G286600 chr6A 518781008 518788494 7486 False 13826.00 13826 100.000000 1 7487 1 chr6A.!!$F2 7486
1 TraesCS6A01G286600 chr6D 377337553 377344576 7023 False 2641.75 5062 92.067750 449 7487 4 chr6D.!!$F2 7038
2 TraesCS6A01G286600 chr6D 21724300 21725161 861 False 870.00 870 85.214000 2483 3349 1 chr6D.!!$F1 866
3 TraesCS6A01G286600 chr6D 380023428 380024082 654 True 333.00 361 86.882000 2172 3033 2 chr6D.!!$R1 861
4 TraesCS6A01G286600 chr6B 563476283 563487626 11343 False 1159.25 3319 90.529125 1 7487 8 chr6B.!!$F2 7486
5 TraesCS6A01G286600 chr4A 716987514 716988383 869 False 893.00 893 85.457000 2480 3349 1 chr4A.!!$F1 869
6 TraesCS6A01G286600 chr5A 578496196 578497093 897 False 822.00 822 83.422000 2424 3351 1 chr5A.!!$F1 927
7 TraesCS6A01G286600 chr1A 227174381 227175174 793 False 717.00 717 83.214000 2523 3350 1 chr1A.!!$F1 827
8 TraesCS6A01G286600 chr2D 177322829 177323337 508 True 507.00 507 84.934000 2832 3350 1 chr2D.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 281 0.037605 GGAGGCGGAGAAGAACGAAA 60.038 55.000 0.00 0.00 0.00 3.46 F
978 4076 0.040781 CCCGTGTTAAAACCAGCGTG 60.041 55.000 0.00 0.00 0.00 5.34 F
1331 4456 0.392729 GAGGAAGAGGAGGACGACGA 60.393 60.000 0.00 0.00 0.00 4.20 F
1334 4459 0.392729 GAAGAGGAGGACGACGAGGA 60.393 60.000 0.00 0.00 0.00 3.71 F
1335 4460 0.393267 AAGAGGAGGACGACGAGGAG 60.393 60.000 0.00 0.00 0.00 3.69 F
1349 4474 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71 F
1541 4666 1.009829 GTTCATGGCCGCTAGTTCAG 58.990 55.000 0.00 0.00 0.00 3.02 F
1923 5049 1.202891 GCACTTGGACCACCTAACCTT 60.203 52.381 0.00 0.00 37.04 3.50 F
2549 5692 1.209019 GTGGTGATCCAGCTGTCTGAT 59.791 52.381 13.81 8.34 45.24 2.90 F
3566 6750 2.294512 CCTTCCTTCAAAGTGCCTGTTC 59.705 50.000 0.00 0.00 0.00 3.18 F
4772 7962 2.969628 AGCATACCAACTCCGAGAAG 57.030 50.000 1.33 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1348 4473 0.162507 TCTTCTTCGTCGTCGTCGTC 59.837 55.000 11.41 0.00 38.33 4.20 R
1833 4959 1.138247 GCAGCCTACAATGTGCAGC 59.862 57.895 0.00 0.00 35.91 5.25 R
2391 5531 1.611977 ACGTCCGTCTTGAACTGATCA 59.388 47.619 0.00 0.00 35.85 2.92 R
3126 6301 3.234353 TGCTGGTAGATGGATAGTGAGG 58.766 50.000 0.00 0.00 0.00 3.86 R
3559 6743 6.017026 ACAGCTACTAAAAAGAAAGAACAGGC 60.017 38.462 0.00 0.00 0.00 4.85 R
3623 6807 6.072064 AGCTCATTTGCATAGATTATTCCTGC 60.072 38.462 0.00 3.88 33.68 4.85 R
3785 6969 3.895041 TCCTTTGGTTCTTTGGCCTAAAG 59.105 43.478 16.92 16.92 45.77 1.85 R
4188 7376 6.182627 TCAGATGAAATAGGCAAGACAATGT 58.817 36.000 0.00 0.00 0.00 2.71 R
4772 7962 4.050553 TGCTGCAAAACAAGTTTATCAGC 58.949 39.130 27.04 27.04 46.37 4.26 R
5569 9039 1.635487 TCTTCCTCATCCTGGTTTGGG 59.365 52.381 0.00 0.00 0.00 4.12 R
6872 10762 0.106149 AGACCAGACGTTGTTGTCCC 59.894 55.000 0.00 0.00 39.77 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.227409 TCGAGTTTTGAGCACGCCA 60.227 52.632 0.00 0.00 0.00 5.69
29 30 0.602638 AGCACGCCAAAACATCTCGA 60.603 50.000 0.00 0.00 0.00 4.04
33 34 2.159430 CACGCCAAAACATCTCGAATGA 59.841 45.455 12.53 0.00 0.00 2.57
61 62 1.067974 TCAAGTGCGAAAAGGACGAGA 59.932 47.619 0.00 0.00 46.56 4.04
73 74 2.672098 AGGACGAGATGAGTGGCTATT 58.328 47.619 0.00 0.00 0.00 1.73
78 79 5.992217 GGACGAGATGAGTGGCTATTTTTAT 59.008 40.000 0.00 0.00 0.00 1.40
88 89 8.730680 TGAGTGGCTATTTTTATGTCTTTCTTC 58.269 33.333 0.00 0.00 0.00 2.87
93 94 9.788960 GGCTATTTTTATGTCTTTCTTCGAATT 57.211 29.630 0.00 0.00 0.00 2.17
125 126 7.805071 CAGTTGGAACTTATTGTTTGCTCTAAG 59.195 37.037 0.00 0.00 39.30 2.18
130 131 7.591426 GGAACTTATTGTTTGCTCTAAGTTGTG 59.409 37.037 10.34 0.00 41.84 3.33
135 136 5.984233 TGTTTGCTCTAAGTTGTGTGTAG 57.016 39.130 0.00 0.00 0.00 2.74
147 148 3.500448 TGTGTGTAGGAAGGATGCAAA 57.500 42.857 0.00 0.00 0.00 3.68
153 154 6.146021 GTGTGTAGGAAGGATGCAAATTTTTG 59.854 38.462 0.00 0.00 41.03 2.44
160 161 6.878389 GGAAGGATGCAAATTTTTGTATTGGA 59.122 34.615 7.83 0.00 42.30 3.53
167 168 8.152309 TGCAAATTTTTGTATTGGAAAGAAGG 57.848 30.769 5.05 0.00 40.24 3.46
168 169 7.228308 TGCAAATTTTTGTATTGGAAAGAAGGG 59.772 33.333 5.05 0.00 40.24 3.95
179 180 5.512942 TGGAAAGAAGGGTACATTGATCA 57.487 39.130 0.00 0.00 0.00 2.92
188 189 7.557719 AGAAGGGTACATTGATCAATTGTTAGG 59.442 37.037 18.41 8.72 0.00 2.69
205 206 9.920946 AATTGTTAGGGAGAAAATTGCTAGATA 57.079 29.630 0.00 0.00 0.00 1.98
217 218 7.969536 AAATTGCTAGATATTCGTGCACTAT 57.030 32.000 16.19 10.64 31.69 2.12
221 222 6.280643 TGCTAGATATTCGTGCACTATTTGT 58.719 36.000 16.19 4.96 0.00 2.83
224 225 8.926710 GCTAGATATTCGTGCACTATTTGTTAT 58.073 33.333 16.19 2.58 0.00 1.89
234 235 7.391786 GTGCACTATTTGTTATAGTTGAGACG 58.608 38.462 10.32 0.00 32.93 4.18
253 254 2.562738 ACGAGAGATGACACAATGTCCA 59.437 45.455 6.51 0.00 46.40 4.02
254 255 3.006859 ACGAGAGATGACACAATGTCCAA 59.993 43.478 6.51 0.00 46.40 3.53
255 256 4.186926 CGAGAGATGACACAATGTCCAAT 58.813 43.478 6.51 0.00 46.40 3.16
256 257 4.633126 CGAGAGATGACACAATGTCCAATT 59.367 41.667 6.51 0.00 46.40 2.32
258 259 6.481313 CGAGAGATGACACAATGTCCAATTAT 59.519 38.462 6.51 0.00 46.40 1.28
259 260 7.517893 CGAGAGATGACACAATGTCCAATTATG 60.518 40.741 6.51 0.00 46.40 1.90
260 261 7.114754 AGAGATGACACAATGTCCAATTATGT 58.885 34.615 6.51 0.00 46.40 2.29
261 262 7.066645 AGAGATGACACAATGTCCAATTATGTG 59.933 37.037 6.51 2.90 46.40 3.21
262 263 5.641783 TGACACAATGTCCAATTATGTGG 57.358 39.130 6.51 0.00 46.40 4.17
263 264 5.320277 TGACACAATGTCCAATTATGTGGA 58.680 37.500 6.51 0.00 46.40 4.02
268 269 3.798794 TCCAATTATGTGGAGGCGG 57.201 52.632 0.00 0.00 42.97 6.13
269 270 1.208706 TCCAATTATGTGGAGGCGGA 58.791 50.000 0.00 0.00 42.97 5.54
270 271 1.140852 TCCAATTATGTGGAGGCGGAG 59.859 52.381 0.00 0.00 42.97 4.63
271 272 1.140852 CCAATTATGTGGAGGCGGAGA 59.859 52.381 0.00 0.00 41.65 3.71
272 273 2.421388 CCAATTATGTGGAGGCGGAGAA 60.421 50.000 0.00 0.00 41.65 2.87
273 274 2.874701 CAATTATGTGGAGGCGGAGAAG 59.125 50.000 0.00 0.00 0.00 2.85
274 275 1.860641 TTATGTGGAGGCGGAGAAGA 58.139 50.000 0.00 0.00 0.00 2.87
275 276 1.860641 TATGTGGAGGCGGAGAAGAA 58.139 50.000 0.00 0.00 0.00 2.52
276 277 0.250513 ATGTGGAGGCGGAGAAGAAC 59.749 55.000 0.00 0.00 0.00 3.01
277 278 1.446272 GTGGAGGCGGAGAAGAACG 60.446 63.158 0.00 0.00 0.00 3.95
278 279 1.605451 TGGAGGCGGAGAAGAACGA 60.605 57.895 0.00 0.00 0.00 3.85
279 280 1.183030 TGGAGGCGGAGAAGAACGAA 61.183 55.000 0.00 0.00 0.00 3.85
280 281 0.037605 GGAGGCGGAGAAGAACGAAA 60.038 55.000 0.00 0.00 0.00 3.46
281 282 1.405661 GGAGGCGGAGAAGAACGAAAT 60.406 52.381 0.00 0.00 0.00 2.17
282 283 1.661112 GAGGCGGAGAAGAACGAAATG 59.339 52.381 0.00 0.00 0.00 2.32
283 284 1.002087 AGGCGGAGAAGAACGAAATGT 59.998 47.619 0.00 0.00 0.00 2.71
284 285 1.128692 GGCGGAGAAGAACGAAATGTG 59.871 52.381 0.00 0.00 0.00 3.21
291 292 2.977405 AGAACGAAATGTGCAAGCTC 57.023 45.000 0.00 0.00 0.00 4.09
311 312 4.556302 GCTCAAGAAGCCAACAGAGAAAAG 60.556 45.833 0.00 0.00 45.92 2.27
312 313 3.885297 TCAAGAAGCCAACAGAGAAAAGG 59.115 43.478 0.00 0.00 0.00 3.11
313 314 2.234143 AGAAGCCAACAGAGAAAAGGC 58.766 47.619 0.00 0.00 45.54 4.35
316 317 2.140065 GCCAACAGAGAAAAGGCAAC 57.860 50.000 0.00 0.00 44.59 4.17
323 649 6.329496 CAACAGAGAAAAGGCAACAAAAGTA 58.671 36.000 0.00 0.00 41.41 2.24
325 651 6.739112 ACAGAGAAAAGGCAACAAAAGTATC 58.261 36.000 0.00 0.00 41.41 2.24
333 659 9.830975 AAAAGGCAACAAAAGTATCTAATTGTT 57.169 25.926 0.00 0.00 44.38 2.83
334 660 9.476202 AAAGGCAACAAAAGTATCTAATTGTTC 57.524 29.630 0.00 0.00 42.36 3.18
365 691 7.552330 AGTTTTCTCTGGATCAATTCTCTTAGC 59.448 37.037 0.00 0.00 0.00 3.09
373 699 6.703607 TGGATCAATTCTCTTAGCGAAGAATC 59.296 38.462 10.62 8.92 41.23 2.52
391 717 7.011109 CGAAGAATCGGTGAAGTATTTAACCAT 59.989 37.037 5.41 0.00 45.32 3.55
392 718 7.553881 AGAATCGGTGAAGTATTTAACCATG 57.446 36.000 5.41 0.00 35.52 3.66
397 723 6.537301 TCGGTGAAGTATTTAACCATGATGTC 59.463 38.462 5.41 0.00 35.52 3.06
398 724 6.509517 CGGTGAAGTATTTAACCATGATGTCG 60.510 42.308 5.41 0.00 35.52 4.35
399 725 6.315393 GGTGAAGTATTTAACCATGATGTCGT 59.685 38.462 0.00 0.00 35.76 4.34
400 726 7.148306 GGTGAAGTATTTAACCATGATGTCGTT 60.148 37.037 0.00 0.00 35.76 3.85
401 727 8.234546 GTGAAGTATTTAACCATGATGTCGTTT 58.765 33.333 0.00 0.00 0.00 3.60
402 728 9.438228 TGAAGTATTTAACCATGATGTCGTTTA 57.562 29.630 0.00 0.00 0.00 2.01
439 765 3.344515 AGAGAAGTTTATTTCGGTGGCC 58.655 45.455 0.00 0.00 32.33 5.36
440 766 2.422479 GAGAAGTTTATTTCGGTGGCCC 59.578 50.000 0.00 0.00 32.33 5.80
441 767 2.164338 GAAGTTTATTTCGGTGGCCCA 58.836 47.619 0.00 0.00 0.00 5.36
453 779 3.578716 TCGGTGGCCCAAAATAAAATGAA 59.421 39.130 0.00 0.00 0.00 2.57
489 816 4.354893 TTTTACTCCGCTAAGTTTGGGA 57.645 40.909 3.00 0.00 0.00 4.37
491 818 3.460648 CTCCGCTAAGTTTGGGAGG 57.539 57.895 11.39 1.99 41.87 4.30
493 820 1.003233 CTCCGCTAAGTTTGGGAGGTT 59.997 52.381 11.39 0.00 41.87 3.50
572 942 9.986833 GAATTGTGCAAACTTTCTTTTACATTT 57.013 25.926 0.00 0.00 0.00 2.32
615 985 4.750952 TCACGAACAGTTGTTTGAAACA 57.249 36.364 16.98 6.66 40.94 2.83
617 987 3.296943 CACGAACAGTTGTTTGAAACACG 59.703 43.478 10.72 11.95 41.97 4.49
618 988 3.058777 ACGAACAGTTGTTTGAAACACGT 60.059 39.130 10.72 12.59 41.97 4.49
621 991 4.078363 ACAGTTGTTTGAAACACGTGAG 57.922 40.909 25.01 0.00 41.97 3.51
628 998 4.926238 TGTTTGAAACACGTGAGCATTTTT 59.074 33.333 25.01 11.05 36.25 1.94
629 999 6.093404 TGTTTGAAACACGTGAGCATTTTTA 58.907 32.000 25.01 5.75 36.25 1.52
632 1002 7.763172 TTGAAACACGTGAGCATTTTTAAAT 57.237 28.000 25.01 0.00 0.00 1.40
633 1003 7.159437 TGAAACACGTGAGCATTTTTAAATG 57.841 32.000 25.01 10.17 46.55 2.32
778 1183 5.574815 AACATTTCTTTTACAACATGCGC 57.425 34.783 0.00 0.00 0.00 6.09
864 3937 4.057428 GCGGCTCTCTGGTCGTGT 62.057 66.667 0.00 0.00 0.00 4.49
880 3970 2.103538 GTCCATCGCGCCGTAGAA 59.896 61.111 0.00 0.00 0.00 2.10
886 3978 0.597637 ATCGCGCCGTAGAAAGATGG 60.598 55.000 0.00 0.00 0.00 3.51
888 3980 2.534903 GCGCCGTAGAAAGATGGGC 61.535 63.158 0.00 0.00 40.36 5.36
895 3987 2.355716 CGTAGAAAGATGGGCCCTTTGA 60.356 50.000 25.70 1.52 34.33 2.69
978 4076 0.040781 CCCGTGTTAAAACCAGCGTG 60.041 55.000 0.00 0.00 0.00 5.34
1046 4159 3.459063 CTCCCGTCCCTCCCGTTC 61.459 72.222 0.00 0.00 0.00 3.95
1131 4244 1.754201 GCCAAGAAGGTGGTCAAGGTT 60.754 52.381 0.00 0.00 41.12 3.50
1257 4373 1.064357 GAGGAGGATTCAGACGTCGAC 59.936 57.143 10.46 5.18 0.00 4.20
1329 4454 1.995646 GCGAGGAAGAGGAGGACGAC 61.996 65.000 0.00 0.00 0.00 4.34
1330 4455 1.707239 CGAGGAAGAGGAGGACGACG 61.707 65.000 0.00 0.00 0.00 5.12
1331 4456 0.392729 GAGGAAGAGGAGGACGACGA 60.393 60.000 0.00 0.00 0.00 4.20
1332 4457 0.393267 AGGAAGAGGAGGACGACGAG 60.393 60.000 0.00 0.00 0.00 4.18
1333 4458 1.378124 GGAAGAGGAGGACGACGAGG 61.378 65.000 0.00 0.00 0.00 4.63
1334 4459 0.392729 GAAGAGGAGGACGACGAGGA 60.393 60.000 0.00 0.00 0.00 3.71
1335 4460 0.393267 AAGAGGAGGACGACGAGGAG 60.393 60.000 0.00 0.00 0.00 3.69
1336 4461 1.820481 GAGGAGGACGACGAGGAGG 60.820 68.421 0.00 0.00 0.00 4.30
1337 4462 2.254737 GAGGAGGACGACGAGGAGGA 62.255 65.000 0.00 0.00 0.00 3.71
1338 4463 1.820481 GGAGGACGACGAGGAGGAG 60.820 68.421 0.00 0.00 0.00 3.69
1339 4464 1.820481 GAGGACGACGAGGAGGAGG 60.820 68.421 0.00 0.00 0.00 4.30
1340 4465 2.254737 GAGGACGACGAGGAGGAGGA 62.255 65.000 0.00 0.00 0.00 3.71
1341 4466 1.820481 GGACGACGAGGAGGAGGAG 60.820 68.421 0.00 0.00 0.00 3.69
1342 4467 1.820481 GACGACGAGGAGGAGGAGG 60.820 68.421 0.00 0.00 0.00 4.30
1343 4468 2.254737 GACGACGAGGAGGAGGAGGA 62.255 65.000 0.00 0.00 0.00 3.71
1344 4469 1.525077 CGACGAGGAGGAGGAGGAG 60.525 68.421 0.00 0.00 0.00 3.69
1345 4470 1.152839 GACGAGGAGGAGGAGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
1346 4471 1.619975 ACGAGGAGGAGGAGGAGGA 60.620 63.158 0.00 0.00 0.00 3.71
1347 4472 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
1348 4473 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1349 4474 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1350 4475 1.231928 GGAGGAGGAGGAGGAGGAC 59.768 68.421 0.00 0.00 0.00 3.85
1351 4476 1.152839 GAGGAGGAGGAGGAGGACG 60.153 68.421 0.00 0.00 0.00 4.79
1352 4477 1.619975 AGGAGGAGGAGGAGGACGA 60.620 63.158 0.00 0.00 0.00 4.20
1353 4478 1.454295 GGAGGAGGAGGAGGACGAC 60.454 68.421 0.00 0.00 0.00 4.34
1354 4479 1.820481 GAGGAGGAGGAGGACGACG 60.820 68.421 0.00 0.00 0.00 5.12
1355 4480 2.254737 GAGGAGGAGGAGGACGACGA 62.255 65.000 0.00 0.00 0.00 4.20
1356 4481 2.114051 GGAGGAGGAGGACGACGAC 61.114 68.421 0.00 0.00 0.00 4.34
1357 4482 2.436292 AGGAGGAGGACGACGACG 60.436 66.667 5.58 5.58 45.75 5.12
1358 4483 2.435586 GGAGGAGGACGACGACGA 60.436 66.667 15.32 0.00 42.66 4.20
1447 4572 2.600731 ACTCTTCGATTGCTTGACGAG 58.399 47.619 0.00 0.00 37.25 4.18
1470 4595 7.249186 AGTAGAAGCGTACTAGTATTGAGTG 57.751 40.000 5.75 0.00 31.14 3.51
1511 4636 4.012374 TCAGTTTTCTCCATCAAGCCATC 58.988 43.478 0.00 0.00 0.00 3.51
1531 4656 2.092429 TCCCATTGTAGAGTTCATGGCC 60.092 50.000 0.00 0.00 0.00 5.36
1541 4666 1.009829 GTTCATGGCCGCTAGTTCAG 58.990 55.000 0.00 0.00 0.00 3.02
1579 4704 4.350368 TCAGTGCTGTGTTTTCTATCCA 57.650 40.909 0.00 0.00 0.00 3.41
1590 4715 5.646360 GTGTTTTCTATCCAGGGAATCGAAA 59.354 40.000 0.00 0.00 0.00 3.46
1703 4828 1.839424 TGATCGACAGAAGGAGCAGA 58.161 50.000 0.00 0.00 0.00 4.26
1704 4829 2.382882 TGATCGACAGAAGGAGCAGAT 58.617 47.619 0.00 0.00 0.00 2.90
1803 4928 4.097892 GGTTGCTTTTCCTTCTTCTGTTCA 59.902 41.667 0.00 0.00 0.00 3.18
1809 4934 6.758416 GCTTTTCCTTCTTCTGTTCACATTTT 59.242 34.615 0.00 0.00 0.00 1.82
1848 4974 2.256391 TGTGCTGCACATTGTAGGC 58.744 52.632 29.99 2.69 39.62 3.93
1923 5049 1.202891 GCACTTGGACCACCTAACCTT 60.203 52.381 0.00 0.00 37.04 3.50
1947 5073 6.349300 TCCAAATCTTAAAAGGAGGATCTCG 58.651 40.000 0.00 0.00 33.73 4.04
1962 5088 6.924612 GGAGGATCTCGGAAAGTAAGTTTATC 59.075 42.308 0.00 0.00 33.73 1.75
1963 5089 6.818233 AGGATCTCGGAAAGTAAGTTTATCC 58.182 40.000 0.00 0.00 31.92 2.59
1964 5090 6.383147 AGGATCTCGGAAAGTAAGTTTATCCA 59.617 38.462 0.00 0.00 33.31 3.41
1965 5091 7.046033 GGATCTCGGAAAGTAAGTTTATCCAA 58.954 38.462 0.00 0.00 32.02 3.53
1966 5092 7.715686 GGATCTCGGAAAGTAAGTTTATCCAAT 59.284 37.037 0.00 0.00 32.02 3.16
1969 5095 9.760077 TCTCGGAAAGTAAGTTTATCCAATATC 57.240 33.333 0.00 0.00 0.00 1.63
1980 5106 8.568617 AGTTTATCCAATATCTTGTACTCCCT 57.431 34.615 0.00 0.00 0.00 4.20
1981 5107 8.652290 AGTTTATCCAATATCTTGTACTCCCTC 58.348 37.037 0.00 0.00 0.00 4.30
1982 5108 7.554959 TTATCCAATATCTTGTACTCCCTCC 57.445 40.000 0.00 0.00 0.00 4.30
1983 5109 3.895656 TCCAATATCTTGTACTCCCTCCG 59.104 47.826 0.00 0.00 0.00 4.63
1984 5110 3.641906 CCAATATCTTGTACTCCCTCCGT 59.358 47.826 0.00 0.00 0.00 4.69
1985 5111 4.831155 CCAATATCTTGTACTCCCTCCGTA 59.169 45.833 0.00 0.00 0.00 4.02
1986 5112 5.303589 CCAATATCTTGTACTCCCTCCGTAA 59.696 44.000 0.00 0.00 0.00 3.18
1987 5113 6.183360 CCAATATCTTGTACTCCCTCCGTAAA 60.183 42.308 0.00 0.00 0.00 2.01
1988 5114 6.651975 ATATCTTGTACTCCCTCCGTAAAG 57.348 41.667 0.00 0.00 0.00 1.85
1989 5115 4.038271 TCTTGTACTCCCTCCGTAAAGA 57.962 45.455 0.00 0.00 0.00 2.52
1990 5116 4.410099 TCTTGTACTCCCTCCGTAAAGAA 58.590 43.478 0.00 0.00 0.00 2.52
1991 5117 4.834496 TCTTGTACTCCCTCCGTAAAGAAA 59.166 41.667 0.00 0.00 0.00 2.52
1992 5118 5.482878 TCTTGTACTCCCTCCGTAAAGAAAT 59.517 40.000 0.00 0.00 0.00 2.17
1993 5119 6.664816 TCTTGTACTCCCTCCGTAAAGAAATA 59.335 38.462 0.00 0.00 0.00 1.40
1994 5120 6.212888 TGTACTCCCTCCGTAAAGAAATAC 57.787 41.667 0.00 0.00 0.00 1.89
1995 5121 5.716228 TGTACTCCCTCCGTAAAGAAATACA 59.284 40.000 0.00 0.00 0.00 2.29
1996 5122 5.750352 ACTCCCTCCGTAAAGAAATACAA 57.250 39.130 0.00 0.00 0.00 2.41
1997 5123 5.731591 ACTCCCTCCGTAAAGAAATACAAG 58.268 41.667 0.00 0.00 0.00 3.16
1998 5124 5.247792 ACTCCCTCCGTAAAGAAATACAAGT 59.752 40.000 0.00 0.00 0.00 3.16
1999 5125 6.438425 ACTCCCTCCGTAAAGAAATACAAGTA 59.562 38.462 0.00 0.00 0.00 2.24
2000 5126 6.633856 TCCCTCCGTAAAGAAATACAAGTAC 58.366 40.000 0.00 0.00 0.00 2.73
2001 5127 6.211184 TCCCTCCGTAAAGAAATACAAGTACA 59.789 38.462 0.00 0.00 0.00 2.90
2002 5128 6.534079 CCCTCCGTAAAGAAATACAAGTACAG 59.466 42.308 0.00 0.00 0.00 2.74
2003 5129 7.318141 CCTCCGTAAAGAAATACAAGTACAGA 58.682 38.462 0.00 0.00 0.00 3.41
2004 5130 7.488471 CCTCCGTAAAGAAATACAAGTACAGAG 59.512 40.741 0.00 0.00 0.00 3.35
2005 5131 7.318141 TCCGTAAAGAAATACAAGTACAGAGG 58.682 38.462 0.00 0.00 0.00 3.69
2006 5132 6.534079 CCGTAAAGAAATACAAGTACAGAGGG 59.466 42.308 0.00 0.00 0.00 4.30
2007 5133 7.318141 CGTAAAGAAATACAAGTACAGAGGGA 58.682 38.462 0.00 0.00 0.00 4.20
2078 5207 2.142319 GAAATGGTGTTGGCGCAAAAT 58.858 42.857 10.83 0.00 0.00 1.82
2085 5214 2.799412 GTGTTGGCGCAAAATTGATTCA 59.201 40.909 10.83 0.00 0.00 2.57
2114 5243 9.132521 CTTTTGTAATTGAGGTGCATTTCTTAG 57.867 33.333 0.00 0.00 0.00 2.18
2115 5244 6.194796 TGTAATTGAGGTGCATTTCTTAGC 57.805 37.500 0.00 0.00 0.00 3.09
2116 5245 5.945784 TGTAATTGAGGTGCATTTCTTAGCT 59.054 36.000 0.00 0.00 0.00 3.32
2118 5247 2.621338 TGAGGTGCATTTCTTAGCTCG 58.379 47.619 0.00 0.00 40.73 5.03
2119 5248 2.028112 TGAGGTGCATTTCTTAGCTCGT 60.028 45.455 0.00 0.00 40.73 4.18
2120 5249 3.194755 TGAGGTGCATTTCTTAGCTCGTA 59.805 43.478 0.00 0.00 40.73 3.43
2123 5252 5.914033 AGGTGCATTTCTTAGCTCGTATAA 58.086 37.500 0.00 0.00 0.00 0.98
2158 5294 4.940046 CAGATTGTAACAAGAGGAGTGCAT 59.060 41.667 0.00 0.00 0.00 3.96
2391 5531 8.907222 AAAATGTTGCCAGAAAAGATTATGTT 57.093 26.923 0.00 0.00 0.00 2.71
2478 5618 1.346068 GAGGTAAGCTGCCTATCCCAG 59.654 57.143 9.79 0.00 36.29 4.45
2549 5692 1.209019 GTGGTGATCCAGCTGTCTGAT 59.791 52.381 13.81 8.34 45.24 2.90
2951 6122 5.869344 GTCAAAGGTTTGCTTTCTTTCAACT 59.131 36.000 0.00 0.00 38.05 3.16
3112 6286 6.960542 TGGTATCTTCCTCTCCCCTATTATTC 59.039 42.308 0.00 0.00 0.00 1.75
3126 6301 9.333724 TCCCCTATTATTCGTTAGATTGTTTTC 57.666 33.333 0.00 0.00 0.00 2.29
3559 6743 2.930950 TGTGGTCCTTCCTTCAAAGTG 58.069 47.619 0.00 0.00 37.07 3.16
3566 6750 2.294512 CCTTCCTTCAAAGTGCCTGTTC 59.705 50.000 0.00 0.00 0.00 3.18
3623 6807 4.766891 TCCTGTATTTTTCTTCCTGCCTTG 59.233 41.667 0.00 0.00 0.00 3.61
4169 7357 8.939929 CATTATACATCGTCTTGGCTATTTCAT 58.060 33.333 0.00 0.00 0.00 2.57
4170 7358 8.534333 TTATACATCGTCTTGGCTATTTCATC 57.466 34.615 0.00 0.00 0.00 2.92
4171 7359 5.028549 ACATCGTCTTGGCTATTTCATCT 57.971 39.130 0.00 0.00 0.00 2.90
4172 7360 4.813161 ACATCGTCTTGGCTATTTCATCTG 59.187 41.667 0.00 0.00 0.00 2.90
4173 7361 4.736126 TCGTCTTGGCTATTTCATCTGA 57.264 40.909 0.00 0.00 0.00 3.27
4174 7362 5.282055 TCGTCTTGGCTATTTCATCTGAT 57.718 39.130 0.00 0.00 0.00 2.90
4175 7363 6.405278 TCGTCTTGGCTATTTCATCTGATA 57.595 37.500 0.00 0.00 0.00 2.15
4176 7364 6.997655 TCGTCTTGGCTATTTCATCTGATAT 58.002 36.000 0.00 0.00 0.00 1.63
4177 7365 6.870439 TCGTCTTGGCTATTTCATCTGATATG 59.130 38.462 0.00 0.00 0.00 1.78
4178 7366 6.648310 CGTCTTGGCTATTTCATCTGATATGT 59.352 38.462 0.00 0.00 0.00 2.29
4179 7367 7.814587 CGTCTTGGCTATTTCATCTGATATGTA 59.185 37.037 0.00 0.00 0.00 2.29
4180 7368 8.930760 GTCTTGGCTATTTCATCTGATATGTAC 58.069 37.037 0.00 0.00 0.00 2.90
4181 7369 8.874156 TCTTGGCTATTTCATCTGATATGTACT 58.126 33.333 0.00 0.00 0.00 2.73
4182 7370 9.149225 CTTGGCTATTTCATCTGATATGTACTC 57.851 37.037 0.00 0.00 0.00 2.59
4183 7371 8.193953 TGGCTATTTCATCTGATATGTACTCA 57.806 34.615 0.00 0.00 0.00 3.41
4184 7372 8.819845 TGGCTATTTCATCTGATATGTACTCAT 58.180 33.333 0.00 0.00 38.00 2.90
4185 7373 9.664332 GGCTATTTCATCTGATATGTACTCATT 57.336 33.333 0.00 0.00 35.70 2.57
4200 7388 7.786178 TGTACTCATTATACATTGTCTTGCC 57.214 36.000 0.00 0.00 0.00 4.52
4201 7389 7.564793 TGTACTCATTATACATTGTCTTGCCT 58.435 34.615 0.00 0.00 0.00 4.75
4202 7390 8.700973 TGTACTCATTATACATTGTCTTGCCTA 58.299 33.333 0.00 0.00 0.00 3.93
4203 7391 9.712305 GTACTCATTATACATTGTCTTGCCTAT 57.288 33.333 0.00 0.00 0.00 2.57
4205 7393 9.632638 ACTCATTATACATTGTCTTGCCTATTT 57.367 29.630 0.00 0.00 0.00 1.40
4207 7395 9.625747 TCATTATACATTGTCTTGCCTATTTCA 57.374 29.630 0.00 0.00 0.00 2.69
4316 7504 6.380095 AATTGTGCTTTCGTACAAAAGGTA 57.620 33.333 8.33 0.00 46.31 3.08
4500 7690 7.093992 GCTGTGTCTCTTATCTCTTGTAAAGT 58.906 38.462 0.00 0.00 46.34 2.66
4642 7832 9.232473 GAGGGAGTATTTTCAAAGTTATGTCTT 57.768 33.333 0.00 0.00 0.00 3.01
4772 7962 2.969628 AGCATACCAACTCCGAGAAG 57.030 50.000 1.33 0.00 0.00 2.85
4944 8394 3.314693 ACTTCAGTAACTGAACCCTCCA 58.685 45.455 0.00 0.00 44.27 3.86
4945 8395 3.714798 ACTTCAGTAACTGAACCCTCCAA 59.285 43.478 0.00 0.00 44.27 3.53
5052 8502 5.011329 CGCCCAGGGTATGTTAATCTTACTA 59.989 44.000 7.55 0.00 0.00 1.82
5055 8505 6.453092 CCAGGGTATGTTAATCTTACTACCG 58.547 44.000 0.00 0.00 31.41 4.02
5099 8553 7.519927 TGGTACTTTACTTATGTTTCCCTGTT 58.480 34.615 0.00 0.00 0.00 3.16
5100 8554 8.000127 TGGTACTTTACTTATGTTTCCCTGTTT 59.000 33.333 0.00 0.00 0.00 2.83
5101 8555 9.506018 GGTACTTTACTTATGTTTCCCTGTTTA 57.494 33.333 0.00 0.00 0.00 2.01
5255 8709 6.551975 TGGATTATTTACCAGGAGTGACGATA 59.448 38.462 0.00 0.00 0.00 2.92
5325 8779 6.644248 TCATAGCATGAATTTTCATCCAGG 57.356 37.500 0.00 0.00 45.62 4.45
5326 8780 6.367161 TCATAGCATGAATTTTCATCCAGGA 58.633 36.000 0.00 0.00 45.62 3.86
5327 8781 6.834969 TCATAGCATGAATTTTCATCCAGGAA 59.165 34.615 0.00 0.00 45.62 3.36
5328 8782 5.334724 AGCATGAATTTTCATCCAGGAAC 57.665 39.130 0.00 0.00 45.62 3.62
5569 9039 3.723348 GCGGAGGGCGTTGTTGAC 61.723 66.667 0.00 0.00 0.00 3.18
5578 9048 0.248866 GCGTTGTTGACCCAAACCAG 60.249 55.000 0.00 0.00 0.00 4.00
5668 9138 7.278646 GGAAAGAAGAAAAATGAACAAGCAAGT 59.721 33.333 0.00 0.00 0.00 3.16
5724 9197 0.315251 GAAAGACCAGCAAAGCACCC 59.685 55.000 0.00 0.00 0.00 4.61
5740 9213 0.555769 ACCCCAAGAGCAACAAAGGA 59.444 50.000 0.00 0.00 0.00 3.36
5793 9266 6.457528 GCTGAAATGAACGGAGATAAGAAAGG 60.458 42.308 0.00 0.00 0.00 3.11
5920 9393 2.224378 TGAGCAAACAGAGGAGGTCAAG 60.224 50.000 0.00 0.00 35.79 3.02
5946 9419 2.028930 ACAAGGGTGCGAAGAGAAGTAG 60.029 50.000 0.00 0.00 0.00 2.57
5990 9463 5.893897 AAATGGAGAGAAGAAAGATGTGC 57.106 39.130 0.00 0.00 0.00 4.57
6103 9576 2.372172 AGAGAAGAAACCGGTGTCCAAT 59.628 45.455 21.62 8.10 0.00 3.16
6162 9635 2.680352 GAGGCGGGACTGGTGAGA 60.680 66.667 0.00 0.00 0.00 3.27
6163 9636 2.203788 AGGCGGGACTGGTGAGAA 60.204 61.111 0.00 0.00 0.00 2.87
6175 9648 4.583871 ACTGGTGAGAAGCTTATCTTTGG 58.416 43.478 20.95 11.49 34.56 3.28
6183 9656 4.582240 AGAAGCTTATCTTTGGCCTATTGC 59.418 41.667 3.32 0.00 34.56 3.56
6217 9690 7.587629 TCTCTTGCTTTGTGTGATTATTCTTG 58.412 34.615 0.00 0.00 0.00 3.02
6224 9699 7.809331 GCTTTGTGTGATTATTCTTGATCAACA 59.191 33.333 3.38 0.00 34.34 3.33
6259 9734 0.875059 GGGAGGCAAAACAGAAGTCG 59.125 55.000 0.00 0.00 0.00 4.18
6279 9754 3.135348 TCGGAGAAGAGGACGAAGGTATA 59.865 47.826 0.00 0.00 31.79 1.47
6281 9756 4.023878 CGGAGAAGAGGACGAAGGTATAAG 60.024 50.000 0.00 0.00 0.00 1.73
6287 9762 7.342284 AGAAGAGGACGAAGGTATAAGAATTGA 59.658 37.037 0.00 0.00 0.00 2.57
6301 9776 9.823647 GTATAAGAATTGATGGTTCAAGAGAGA 57.176 33.333 0.00 0.00 44.75 3.10
6302 9777 8.961294 ATAAGAATTGATGGTTCAAGAGAGAG 57.039 34.615 0.00 0.00 44.75 3.20
6303 9778 5.184711 AGAATTGATGGTTCAAGAGAGAGC 58.815 41.667 0.00 0.00 44.75 4.09
6422 9899 2.685897 GGTACAAGTTTGTGGTGAAGCA 59.314 45.455 7.73 0.00 42.31 3.91
6443 9920 4.268884 GCAAAATTTTGTTGTACGCTGGAA 59.731 37.500 27.13 0.00 40.24 3.53
6540 10023 1.000955 AGTGAAGTCGTCATGGACACC 59.999 52.381 5.12 0.00 38.90 4.16
6545 10028 2.509336 CGTCATGGACACCGAGGC 60.509 66.667 0.00 0.00 32.09 4.70
6556 10039 3.484407 GACACCGAGGCTCCTATTACTA 58.516 50.000 9.32 0.00 0.00 1.82
6775 10396 4.439057 ACAACGCTCTTCACTTGTTCTAA 58.561 39.130 0.00 0.00 0.00 2.10
6796 10417 4.712122 ACATTTGGAAACGTCTGTGTTT 57.288 36.364 0.00 1.54 44.36 2.83
6813 10434 4.026407 GTGTTTGTCTCTTTTGCACGTAC 58.974 43.478 0.00 0.00 0.00 3.67
6818 10439 3.064271 TGTCTCTTTTGCACGTACCAAAC 59.936 43.478 11.67 3.92 32.40 2.93
6900 10794 3.243771 ACAACGTCTGGTCTGAAGGTAAG 60.244 47.826 0.00 0.00 0.00 2.34
6958 10855 4.970711 AGAGGCATAGATCAGGATTTGTG 58.029 43.478 0.00 0.00 0.00 3.33
7029 10932 3.335579 ACGCAAATTTGGTCCTCTAGAC 58.664 45.455 19.47 0.00 45.51 2.59
7096 11010 6.889198 TCTTTAGGATTAGACCCAATCTGTG 58.111 40.000 0.00 0.00 38.49 3.66
7155 11291 3.569701 AGTCATGTTAGTGTTTGCCAAGG 59.430 43.478 0.00 0.00 0.00 3.61
7160 11296 3.181434 TGTTAGTGTTTGCCAAGGGATCT 60.181 43.478 0.00 0.00 0.00 2.75
7214 11418 7.552687 AGGTATCTCGAAAGCACATCAAATAAA 59.447 33.333 0.00 0.00 0.00 1.40
7219 11423 9.554724 TCTCGAAAGCACATCAAATAAAATAAC 57.445 29.630 0.00 0.00 0.00 1.89
7221 11425 9.853555 TCGAAAGCACATCAAATAAAATAACAT 57.146 25.926 0.00 0.00 0.00 2.71
7224 11428 9.853555 AAAGCACATCAAATAAAATAACATCGA 57.146 25.926 0.00 0.00 0.00 3.59
7225 11429 9.507280 AAGCACATCAAATAAAATAACATCGAG 57.493 29.630 0.00 0.00 0.00 4.04
7260 11464 6.969473 GCAACAATTAGCAGAGGAAGTTTATC 59.031 38.462 0.00 0.00 0.00 1.75
7295 11513 2.283617 CGCAAGTAGCAGATACAGCTTG 59.716 50.000 10.38 0.00 46.13 4.01
7477 11696 1.934589 GCCAAGGCGTCAAAAACTTT 58.065 45.000 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 6.483307 TGAAGAACACTCATTCGAGATGTTTT 59.517 34.615 0.00 0.00 42.34 2.43
29 30 3.466836 TCGCACTTGAAGAACACTCATT 58.533 40.909 0.00 0.00 0.00 2.57
33 34 3.065371 CCTTTTCGCACTTGAAGAACACT 59.935 43.478 0.00 0.00 0.00 3.55
61 62 8.814038 AGAAAGACATAAAAATAGCCACTCAT 57.186 30.769 0.00 0.00 0.00 2.90
88 89 4.658869 AAGTTCCAACTGCGAGGAATTCG 61.659 47.826 0.00 0.00 44.98 3.34
93 94 3.244422 ACAATAAGTTCCAACTGCGAGGA 60.244 43.478 0.00 0.00 39.66 3.71
94 95 3.074412 ACAATAAGTTCCAACTGCGAGG 58.926 45.455 0.00 0.00 39.66 4.63
125 126 2.778299 TGCATCCTTCCTACACACAAC 58.222 47.619 0.00 0.00 0.00 3.32
130 131 6.223120 ACAAAAATTTGCATCCTTCCTACAC 58.777 36.000 5.82 0.00 41.79 2.90
135 136 6.878389 TCCAATACAAAAATTTGCATCCTTCC 59.122 34.615 5.82 0.00 41.79 3.46
147 148 8.485578 TGTACCCTTCTTTCCAATACAAAAAT 57.514 30.769 0.00 0.00 0.00 1.82
153 154 7.556275 TGATCAATGTACCCTTCTTTCCAATAC 59.444 37.037 0.00 0.00 0.00 1.89
160 161 7.781324 ACAATTGATCAATGTACCCTTCTTT 57.219 32.000 21.39 0.00 0.00 2.52
167 168 7.054124 TCTCCCTAACAATTGATCAATGTACC 58.946 38.462 21.39 0.00 0.00 3.34
168 169 8.506168 TTCTCCCTAACAATTGATCAATGTAC 57.494 34.615 21.39 0.00 0.00 2.90
179 180 8.829373 ATCTAGCAATTTTCTCCCTAACAATT 57.171 30.769 0.00 0.00 0.00 2.32
188 189 6.017934 TGCACGAATATCTAGCAATTTTCTCC 60.018 38.462 0.00 0.00 31.42 3.71
205 206 8.487313 TCAACTATAACAAATAGTGCACGAAT 57.513 30.769 12.01 6.55 35.25 3.34
217 218 7.968956 GTCATCTCTCGTCTCAACTATAACAAA 59.031 37.037 0.00 0.00 0.00 2.83
221 222 6.598064 TGTGTCATCTCTCGTCTCAACTATAA 59.402 38.462 0.00 0.00 0.00 0.98
224 225 4.324267 TGTGTCATCTCTCGTCTCAACTA 58.676 43.478 0.00 0.00 0.00 2.24
251 252 1.140852 TCTCCGCCTCCACATAATTGG 59.859 52.381 0.00 0.00 38.10 3.16
253 254 2.771943 TCTTCTCCGCCTCCACATAATT 59.228 45.455 0.00 0.00 0.00 1.40
254 255 2.398588 TCTTCTCCGCCTCCACATAAT 58.601 47.619 0.00 0.00 0.00 1.28
255 256 1.860641 TCTTCTCCGCCTCCACATAA 58.139 50.000 0.00 0.00 0.00 1.90
256 257 1.480954 GTTCTTCTCCGCCTCCACATA 59.519 52.381 0.00 0.00 0.00 2.29
258 259 1.671742 GTTCTTCTCCGCCTCCACA 59.328 57.895 0.00 0.00 0.00 4.17
259 260 1.446272 CGTTCTTCTCCGCCTCCAC 60.446 63.158 0.00 0.00 0.00 4.02
260 261 1.183030 TTCGTTCTTCTCCGCCTCCA 61.183 55.000 0.00 0.00 0.00 3.86
261 262 0.037605 TTTCGTTCTTCTCCGCCTCC 60.038 55.000 0.00 0.00 0.00 4.30
262 263 1.661112 CATTTCGTTCTTCTCCGCCTC 59.339 52.381 0.00 0.00 0.00 4.70
263 264 1.002087 ACATTTCGTTCTTCTCCGCCT 59.998 47.619 0.00 0.00 0.00 5.52
264 265 1.128692 CACATTTCGTTCTTCTCCGCC 59.871 52.381 0.00 0.00 0.00 6.13
265 266 1.464189 GCACATTTCGTTCTTCTCCGC 60.464 52.381 0.00 0.00 0.00 5.54
266 267 1.798223 TGCACATTTCGTTCTTCTCCG 59.202 47.619 0.00 0.00 0.00 4.63
267 268 3.814945 CTTGCACATTTCGTTCTTCTCC 58.185 45.455 0.00 0.00 0.00 3.71
268 269 3.058639 AGCTTGCACATTTCGTTCTTCTC 60.059 43.478 0.00 0.00 0.00 2.87
269 270 2.880890 AGCTTGCACATTTCGTTCTTCT 59.119 40.909 0.00 0.00 0.00 2.85
270 271 3.229552 GAGCTTGCACATTTCGTTCTTC 58.770 45.455 0.00 0.00 0.00 2.87
271 272 2.618241 TGAGCTTGCACATTTCGTTCTT 59.382 40.909 0.00 0.00 0.00 2.52
272 273 2.221169 TGAGCTTGCACATTTCGTTCT 58.779 42.857 0.00 0.00 0.00 3.01
273 274 2.686558 TGAGCTTGCACATTTCGTTC 57.313 45.000 0.00 0.00 0.00 3.95
274 275 2.618241 TCTTGAGCTTGCACATTTCGTT 59.382 40.909 0.00 0.00 0.00 3.85
275 276 2.221169 TCTTGAGCTTGCACATTTCGT 58.779 42.857 0.00 0.00 0.00 3.85
276 277 2.975410 TCTTGAGCTTGCACATTTCG 57.025 45.000 0.00 0.00 0.00 3.46
291 292 3.551659 GCCTTTTCTCTGTTGGCTTCTTG 60.552 47.826 0.00 0.00 40.36 3.02
302 303 6.974965 AGATACTTTTGTTGCCTTTTCTCTG 58.025 36.000 0.00 0.00 0.00 3.35
311 312 8.915654 CAAGAACAATTAGATACTTTTGTTGCC 58.084 33.333 13.20 5.00 41.10 4.52
312 313 9.463443 ACAAGAACAATTAGATACTTTTGTTGC 57.537 29.630 13.20 8.09 41.10 4.17
325 651 9.273016 TCCAGAGAAAACTACAAGAACAATTAG 57.727 33.333 0.00 0.00 0.00 1.73
333 659 8.378565 AGAATTGATCCAGAGAAAACTACAAGA 58.621 33.333 0.00 0.00 0.00 3.02
334 660 8.558973 AGAATTGATCCAGAGAAAACTACAAG 57.441 34.615 0.00 0.00 0.00 3.16
343 669 5.360999 TCGCTAAGAGAATTGATCCAGAGAA 59.639 40.000 0.00 0.00 0.00 2.87
349 675 6.128956 CGATTCTTCGCTAAGAGAATTGATCC 60.129 42.308 0.55 0.00 42.60 3.36
365 691 6.311935 TGGTTAAATACTTCACCGATTCTTCG 59.688 38.462 0.00 0.00 45.08 3.79
373 699 6.509517 CGACATCATGGTTAAATACTTCACCG 60.510 42.308 0.00 0.00 32.26 4.94
374 700 6.315393 ACGACATCATGGTTAAATACTTCACC 59.685 38.462 0.00 0.00 30.53 4.02
410 736 8.936864 CACCGAAATAAACTTCTCTCTTGTATT 58.063 33.333 0.00 0.00 0.00 1.89
411 737 7.549488 CCACCGAAATAAACTTCTCTCTTGTAT 59.451 37.037 0.00 0.00 0.00 2.29
412 738 6.872020 CCACCGAAATAAACTTCTCTCTTGTA 59.128 38.462 0.00 0.00 0.00 2.41
413 739 5.701290 CCACCGAAATAAACTTCTCTCTTGT 59.299 40.000 0.00 0.00 0.00 3.16
486 813 2.644676 GTCATTTCTAGCCAACCTCCC 58.355 52.381 0.00 0.00 0.00 4.30
489 816 3.806949 TTGGTCATTTCTAGCCAACCT 57.193 42.857 0.00 0.00 36.23 3.50
491 818 8.825667 TTAAATTTTGGTCATTTCTAGCCAAC 57.174 30.769 0.00 0.00 40.27 3.77
493 820 9.487790 CTTTTAAATTTTGGTCATTTCTAGCCA 57.512 29.630 0.00 0.00 0.00 4.75
583 953 9.528018 AAACAACTGTTCGTGATATTCAAAAAT 57.472 25.926 0.00 0.00 37.25 1.82
588 958 6.852858 TCAAACAACTGTTCGTGATATTCA 57.147 33.333 0.00 0.00 37.25 2.57
589 959 7.642194 TGTTTCAAACAACTGTTCGTGATATTC 59.358 33.333 0.00 0.00 38.72 1.75
603 973 2.857618 TGCTCACGTGTTTCAAACAAC 58.142 42.857 16.51 0.00 44.16 3.32
606 976 5.448926 AAAAATGCTCACGTGTTTCAAAC 57.551 34.783 16.51 0.00 0.00 2.93
754 1159 5.662815 GCGCATGTTGTAAAAGAAATGTTCG 60.663 40.000 0.30 0.00 34.02 3.95
855 3928 2.880879 CGCGATGGACACGACCAG 60.881 66.667 0.00 0.00 43.49 4.00
860 3933 4.840288 TACGGCGCGATGGACACG 62.840 66.667 12.10 4.28 0.00 4.49
864 3937 1.226859 CTTTCTACGGCGCGATGGA 60.227 57.895 12.10 0.00 0.00 3.41
874 3964 2.017049 CAAAGGGCCCATCTTTCTACG 58.983 52.381 27.56 0.00 32.72 3.51
880 3970 1.625315 GCTTTTCAAAGGGCCCATCTT 59.375 47.619 27.56 11.58 36.53 2.40
886 3978 0.318441 GACAGGCTTTTCAAAGGGCC 59.682 55.000 1.78 5.25 44.38 5.80
888 3980 2.294512 GTCAGACAGGCTTTTCAAAGGG 59.705 50.000 0.00 0.00 36.53 3.95
895 3987 4.800554 CCGGTCAGACAGGCTTTT 57.199 55.556 6.82 0.00 0.00 2.27
953 4051 0.824595 GGTTTTAACACGGGCCTGGT 60.825 55.000 18.00 8.26 0.00 4.00
978 4076 3.596310 AAACCCTAAGCGAGAGAAGAC 57.404 47.619 0.00 0.00 0.00 3.01
1051 4164 4.820744 CTTCCGGGCCATGGGGTG 62.821 72.222 15.13 0.90 36.17 4.61
1113 4226 2.230660 GGAACCTTGACCACCTTCTTG 58.769 52.381 0.00 0.00 0.00 3.02
1329 4454 1.150536 CTCCTCCTCCTCCTCCTCG 59.849 68.421 0.00 0.00 0.00 4.63
1330 4455 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1331 4456 1.087725 TCCTCCTCCTCCTCCTCCT 59.912 63.158 0.00 0.00 0.00 3.69
1332 4457 1.231928 GTCCTCCTCCTCCTCCTCC 59.768 68.421 0.00 0.00 0.00 4.30
1333 4458 1.152839 CGTCCTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
1334 4459 1.619975 TCGTCCTCCTCCTCCTCCT 60.620 63.158 0.00 0.00 0.00 3.69
1335 4460 1.454295 GTCGTCCTCCTCCTCCTCC 60.454 68.421 0.00 0.00 0.00 4.30
1336 4461 1.820481 CGTCGTCCTCCTCCTCCTC 60.820 68.421 0.00 0.00 0.00 3.71
1337 4462 2.272797 CGTCGTCCTCCTCCTCCT 59.727 66.667 0.00 0.00 0.00 3.69
1338 4463 2.114051 GTCGTCGTCCTCCTCCTCC 61.114 68.421 0.00 0.00 0.00 4.30
1339 4464 2.462782 CGTCGTCGTCCTCCTCCTC 61.463 68.421 0.00 0.00 0.00 3.71
1340 4465 2.436292 CGTCGTCGTCCTCCTCCT 60.436 66.667 0.00 0.00 0.00 3.69
1341 4466 2.435586 TCGTCGTCGTCCTCCTCC 60.436 66.667 1.33 0.00 38.33 4.30
1342 4467 2.783935 GTCGTCGTCGTCCTCCTC 59.216 66.667 1.33 0.00 38.33 3.71
1343 4468 3.117171 CGTCGTCGTCGTCCTCCT 61.117 66.667 3.67 0.00 38.33 3.69
1344 4469 2.560172 CTTCGTCGTCGTCGTCCTCC 62.560 65.000 11.41 0.00 38.33 4.30
1345 4470 1.225691 CTTCGTCGTCGTCGTCCTC 60.226 63.158 11.41 0.00 38.33 3.71
1346 4471 1.224069 TTCTTCGTCGTCGTCGTCCT 61.224 55.000 11.41 0.00 38.33 3.85
1347 4472 0.788645 CTTCTTCGTCGTCGTCGTCC 60.789 60.000 11.41 0.00 38.33 4.79
1348 4473 0.162507 TCTTCTTCGTCGTCGTCGTC 59.837 55.000 11.41 0.00 38.33 4.20
1349 4474 0.583438 TTCTTCTTCGTCGTCGTCGT 59.417 50.000 11.41 0.00 38.33 4.34
1350 4475 1.136419 TCTTCTTCTTCGTCGTCGTCG 60.136 52.381 5.50 5.50 38.33 5.12
1351 4476 2.497915 CTCTTCTTCTTCGTCGTCGTC 58.502 52.381 1.33 0.00 38.33 4.20
1352 4477 1.197264 CCTCTTCTTCTTCGTCGTCGT 59.803 52.381 1.33 0.00 38.33 4.34
1353 4478 1.463831 TCCTCTTCTTCTTCGTCGTCG 59.536 52.381 0.00 0.00 38.55 5.12
1354 4479 2.725452 CGTCCTCTTCTTCTTCGTCGTC 60.725 54.545 0.00 0.00 0.00 4.20
1355 4480 1.197264 CGTCCTCTTCTTCTTCGTCGT 59.803 52.381 0.00 0.00 0.00 4.34
1356 4481 1.463831 TCGTCCTCTTCTTCTTCGTCG 59.536 52.381 0.00 0.00 0.00 5.12
1357 4482 2.725452 CGTCGTCCTCTTCTTCTTCGTC 60.725 54.545 0.00 0.00 0.00 4.20
1358 4483 1.197264 CGTCGTCCTCTTCTTCTTCGT 59.803 52.381 0.00 0.00 0.00 3.85
1447 4572 6.259608 TCCACTCAATACTAGTACGCTTCTAC 59.740 42.308 4.31 0.00 0.00 2.59
1511 4636 2.301346 GGCCATGAACTCTACAATGGG 58.699 52.381 0.00 0.00 0.00 4.00
1531 4656 2.730672 GCCGTGCACTGAACTAGCG 61.731 63.158 16.19 0.00 0.00 4.26
1559 4684 3.438087 CCTGGATAGAAAACACAGCACTG 59.562 47.826 0.00 0.00 0.00 3.66
1579 4704 2.091665 AGCCCATCAATTTCGATTCCCT 60.092 45.455 0.00 0.00 0.00 4.20
1590 4715 4.101430 AGAAACACAACAAAGCCCATCAAT 59.899 37.500 0.00 0.00 0.00 2.57
1703 4828 1.400846 CGCAGCTGCATCTTCTTCAAT 59.599 47.619 36.03 0.00 42.21 2.57
1704 4829 0.800631 CGCAGCTGCATCTTCTTCAA 59.199 50.000 36.03 0.00 42.21 2.69
1809 4934 9.066892 AGCACATAAACAATACTGAGAAAGAAA 57.933 29.630 0.00 0.00 0.00 2.52
1833 4959 1.138247 GCAGCCTACAATGTGCAGC 59.862 57.895 0.00 0.00 35.91 5.25
1869 4995 9.693739 TCCAACTCCTGCAGATTTTAAATTATA 57.306 29.630 17.39 0.00 0.00 0.98
1870 4996 8.593945 TCCAACTCCTGCAGATTTTAAATTAT 57.406 30.769 17.39 0.00 0.00 1.28
1923 5049 6.349300 CGAGATCCTCCTTTTAAGATTTGGA 58.651 40.000 0.00 0.00 0.00 3.53
1962 5088 3.641906 ACGGAGGGAGTACAAGATATTGG 59.358 47.826 4.88 0.00 0.00 3.16
1963 5089 4.939052 ACGGAGGGAGTACAAGATATTG 57.061 45.455 0.00 0.00 0.00 1.90
1964 5090 6.837568 TCTTTACGGAGGGAGTACAAGATATT 59.162 38.462 0.00 0.00 0.00 1.28
1965 5091 6.371278 TCTTTACGGAGGGAGTACAAGATAT 58.629 40.000 0.00 0.00 0.00 1.63
1966 5092 5.759059 TCTTTACGGAGGGAGTACAAGATA 58.241 41.667 0.00 0.00 0.00 1.98
1969 5095 4.796038 TTCTTTACGGAGGGAGTACAAG 57.204 45.455 0.00 0.00 0.00 3.16
1971 5097 5.716228 TGTATTTCTTTACGGAGGGAGTACA 59.284 40.000 0.00 0.00 0.00 2.90
1972 5098 6.212888 TGTATTTCTTTACGGAGGGAGTAC 57.787 41.667 0.00 0.00 0.00 2.73
1974 5100 5.247792 ACTTGTATTTCTTTACGGAGGGAGT 59.752 40.000 0.00 0.00 0.00 3.85
1975 5101 5.731591 ACTTGTATTTCTTTACGGAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
1976 5102 5.750352 ACTTGTATTTCTTTACGGAGGGA 57.250 39.130 0.00 0.00 0.00 4.20
1977 5103 6.400568 TGTACTTGTATTTCTTTACGGAGGG 58.599 40.000 0.00 0.00 0.00 4.30
1978 5104 7.318141 TCTGTACTTGTATTTCTTTACGGAGG 58.682 38.462 0.00 0.00 0.00 4.30
1979 5105 7.488471 CCTCTGTACTTGTATTTCTTTACGGAG 59.512 40.741 7.98 7.98 40.42 4.63
1980 5106 7.318141 CCTCTGTACTTGTATTTCTTTACGGA 58.682 38.462 0.00 0.00 0.00 4.69
1981 5107 6.534079 CCCTCTGTACTTGTATTTCTTTACGG 59.466 42.308 0.00 0.00 0.00 4.02
1982 5108 7.318141 TCCCTCTGTACTTGTATTTCTTTACG 58.682 38.462 0.00 0.00 0.00 3.18
1983 5109 8.312564 ACTCCCTCTGTACTTGTATTTCTTTAC 58.687 37.037 0.00 0.00 0.00 2.01
1984 5110 8.431910 ACTCCCTCTGTACTTGTATTTCTTTA 57.568 34.615 0.00 0.00 0.00 1.85
1985 5111 7.317722 ACTCCCTCTGTACTTGTATTTCTTT 57.682 36.000 0.00 0.00 0.00 2.52
1986 5112 6.936968 ACTCCCTCTGTACTTGTATTTCTT 57.063 37.500 0.00 0.00 0.00 2.52
1987 5113 8.611051 AATACTCCCTCTGTACTTGTATTTCT 57.389 34.615 0.00 0.00 0.00 2.52
1999 5125 9.892130 CTGAACTTTAATAAATACTCCCTCTGT 57.108 33.333 0.00 0.00 0.00 3.41
2078 5207 7.599621 CACCTCAATTACAAAAGCATGAATCAA 59.400 33.333 0.00 0.00 0.00 2.57
2085 5214 4.870123 TGCACCTCAATTACAAAAGCAT 57.130 36.364 0.00 0.00 0.00 3.79
2114 5243 6.542852 TCTGACTTTGCAATTTTATACGAGC 58.457 36.000 0.00 0.00 0.00 5.03
2115 5244 9.003112 CAATCTGACTTTGCAATTTTATACGAG 57.997 33.333 0.00 0.00 0.00 4.18
2116 5245 8.511321 ACAATCTGACTTTGCAATTTTATACGA 58.489 29.630 0.00 0.00 0.00 3.43
2120 5249 9.979578 TGTTACAATCTGACTTTGCAATTTTAT 57.020 25.926 0.00 0.00 0.00 1.40
2123 5252 8.196771 TCTTGTTACAATCTGACTTTGCAATTT 58.803 29.630 0.00 0.00 0.00 1.82
2158 5294 8.427902 AATCAGTAGATTGCATATGGTCTCTA 57.572 34.615 4.56 0.00 42.72 2.43
2391 5531 1.611977 ACGTCCGTCTTGAACTGATCA 59.388 47.619 0.00 0.00 35.85 2.92
2478 5618 4.867047 CGGATATATCAGACAATCACTGGC 59.133 45.833 14.60 0.00 36.22 4.85
2549 5692 8.935844 CAGACAGACAATTTGCAACTACTAATA 58.064 33.333 0.00 0.00 0.00 0.98
2798 5951 8.798859 AATGAAGCAGTGATAAATCTACAGTT 57.201 30.769 0.00 0.00 0.00 3.16
2974 6147 8.362639 CACAAGGCTTGCTTTAATATTCCATAT 58.637 33.333 26.45 0.00 0.00 1.78
3112 6286 6.816640 TGGATAGTGAGGAAAACAATCTAACG 59.183 38.462 0.00 0.00 0.00 3.18
3126 6301 3.234353 TGCTGGTAGATGGATAGTGAGG 58.766 50.000 0.00 0.00 0.00 3.86
3559 6743 6.017026 ACAGCTACTAAAAAGAAAGAACAGGC 60.017 38.462 0.00 0.00 0.00 4.85
3623 6807 6.072064 AGCTCATTTGCATAGATTATTCCTGC 60.072 38.462 0.00 3.88 33.68 4.85
3785 6969 3.895041 TCCTTTGGTTCTTTGGCCTAAAG 59.105 43.478 16.92 16.92 45.77 1.85
3798 6983 9.975218 ATACAATTAGTTGACTATCCTTTGGTT 57.025 29.630 4.81 0.00 38.71 3.67
3952 7137 6.879400 AGTGTCTGACAATTACTAGGATTCC 58.121 40.000 12.81 0.00 0.00 3.01
4174 7362 9.489084 GGCAAGACAATGTATAATGAGTACATA 57.511 33.333 0.00 0.00 40.80 2.29
4175 7363 8.213679 AGGCAAGACAATGTATAATGAGTACAT 58.786 33.333 0.00 0.00 42.83 2.29
4176 7364 7.564793 AGGCAAGACAATGTATAATGAGTACA 58.435 34.615 0.00 0.00 36.58 2.90
4177 7365 9.712305 ATAGGCAAGACAATGTATAATGAGTAC 57.288 33.333 0.00 0.00 0.00 2.73
4179 7367 9.632638 AAATAGGCAAGACAATGTATAATGAGT 57.367 29.630 0.00 0.00 0.00 3.41
4181 7369 9.625747 TGAAATAGGCAAGACAATGTATAATGA 57.374 29.630 0.00 0.00 0.00 2.57
4184 7372 9.851686 AGATGAAATAGGCAAGACAATGTATAA 57.148 29.630 0.00 0.00 0.00 0.98
4185 7373 9.276590 CAGATGAAATAGGCAAGACAATGTATA 57.723 33.333 0.00 0.00 0.00 1.47
4186 7374 7.994911 TCAGATGAAATAGGCAAGACAATGTAT 59.005 33.333 0.00 0.00 0.00 2.29
4187 7375 7.337938 TCAGATGAAATAGGCAAGACAATGTA 58.662 34.615 0.00 0.00 0.00 2.29
4188 7376 6.182627 TCAGATGAAATAGGCAAGACAATGT 58.817 36.000 0.00 0.00 0.00 2.71
4189 7377 6.688637 TCAGATGAAATAGGCAAGACAATG 57.311 37.500 0.00 0.00 0.00 2.82
4190 7378 8.216423 ACTATCAGATGAAATAGGCAAGACAAT 58.784 33.333 0.00 0.00 31.11 2.71
4191 7379 7.568349 ACTATCAGATGAAATAGGCAAGACAA 58.432 34.615 0.00 0.00 31.11 3.18
4192 7380 7.129457 ACTATCAGATGAAATAGGCAAGACA 57.871 36.000 0.00 0.00 31.11 3.41
4193 7381 7.212976 TGACTATCAGATGAAATAGGCAAGAC 58.787 38.462 0.00 0.00 39.88 3.01
4194 7382 7.365497 TGACTATCAGATGAAATAGGCAAGA 57.635 36.000 0.00 0.00 39.88 3.02
4197 7385 7.971201 AGATTGACTATCAGATGAAATAGGCA 58.029 34.615 0.00 0.00 40.84 4.75
4198 7386 8.093307 TGAGATTGACTATCAGATGAAATAGGC 58.907 37.037 0.00 0.00 35.59 3.93
4199 7387 9.421806 GTGAGATTGACTATCAGATGAAATAGG 57.578 37.037 0.00 0.00 35.59 2.57
4202 7390 8.926374 AGAGTGAGATTGACTATCAGATGAAAT 58.074 33.333 0.00 0.00 35.59 2.17
4203 7391 8.196103 CAGAGTGAGATTGACTATCAGATGAAA 58.804 37.037 0.00 0.00 35.59 2.69
4204 7392 7.341512 ACAGAGTGAGATTGACTATCAGATGAA 59.658 37.037 0.00 0.00 35.59 2.57
4205 7393 6.832900 ACAGAGTGAGATTGACTATCAGATGA 59.167 38.462 0.00 0.00 35.59 2.92
4206 7394 7.041635 ACAGAGTGAGATTGACTATCAGATG 57.958 40.000 0.00 0.00 35.59 2.90
4207 7395 7.658525 AACAGAGTGAGATTGACTATCAGAT 57.341 36.000 0.00 0.00 35.59 2.90
4423 7611 7.781324 AAAATAAATTCATGTGGAGGTGAGT 57.219 32.000 0.00 0.00 0.00 3.41
4536 7726 8.171400 AGGGAGTAATAGCTAAGCAGATAAGTA 58.829 37.037 0.00 0.00 0.00 2.24
4537 7727 7.013834 AGGGAGTAATAGCTAAGCAGATAAGT 58.986 38.462 0.00 0.00 0.00 2.24
4538 7728 7.363443 GGAGGGAGTAATAGCTAAGCAGATAAG 60.363 44.444 0.00 0.00 0.00 1.73
4539 7729 6.437793 GGAGGGAGTAATAGCTAAGCAGATAA 59.562 42.308 0.00 0.00 0.00 1.75
4605 7795 6.652062 TGAAAATACTCCCTCCGTAAAGAAAC 59.348 38.462 0.00 0.00 0.00 2.78
4723 7913 4.078639 AGGTAATTGAGGCTCATACTGC 57.921 45.455 19.50 9.04 0.00 4.40
4772 7962 4.050553 TGCTGCAAAACAAGTTTATCAGC 58.949 39.130 27.04 27.04 46.37 4.26
4944 8394 5.822519 TGACTGCTTCATTCTACACAAAGTT 59.177 36.000 0.00 0.00 0.00 2.66
4945 8395 5.368145 TGACTGCTTCATTCTACACAAAGT 58.632 37.500 0.00 0.00 0.00 2.66
5052 8502 3.519913 AGATCTTAAAAGAGGAAGGCGGT 59.480 43.478 0.00 0.00 38.66 5.68
5055 8505 4.849518 ACCAGATCTTAAAAGAGGAAGGC 58.150 43.478 0.00 0.00 38.66 4.35
5099 8553 7.223260 ACCGGATGAATCTGTACGATAATAA 57.777 36.000 9.46 0.00 0.00 1.40
5100 8554 6.829229 ACCGGATGAATCTGTACGATAATA 57.171 37.500 9.46 0.00 0.00 0.98
5101 8555 5.723672 ACCGGATGAATCTGTACGATAAT 57.276 39.130 9.46 0.28 0.00 1.28
5255 8709 7.012704 GCTAACATGTGATCATATGGTTCAGTT 59.987 37.037 29.16 18.28 34.70 3.16
5315 8769 7.831691 TTTCACATAAAGTTCCTGGATGAAA 57.168 32.000 11.71 11.71 32.66 2.69
5316 8770 7.831691 TTTTCACATAAAGTTCCTGGATGAA 57.168 32.000 0.00 0.00 0.00 2.57
5317 8771 7.890127 AGATTTTCACATAAAGTTCCTGGATGA 59.110 33.333 0.00 0.00 0.00 2.92
5318 8772 8.059798 AGATTTTCACATAAAGTTCCTGGATG 57.940 34.615 0.00 0.00 0.00 3.51
5319 8773 9.753674 TTAGATTTTCACATAAAGTTCCTGGAT 57.246 29.630 0.00 0.00 0.00 3.41
5320 8774 9.010029 GTTAGATTTTCACATAAAGTTCCTGGA 57.990 33.333 0.00 0.00 0.00 3.86
5321 8775 9.014297 AGTTAGATTTTCACATAAAGTTCCTGG 57.986 33.333 0.00 0.00 0.00 4.45
5468 8938 5.827797 TCAGCTGTATGAAATGAAATACCCC 59.172 40.000 14.67 0.00 0.00 4.95
5569 9039 1.635487 TCTTCCTCATCCTGGTTTGGG 59.365 52.381 0.00 0.00 0.00 4.12
5578 9048 5.927819 ACATCTTTCTCATCTTCCTCATCC 58.072 41.667 0.00 0.00 0.00 3.51
5620 9090 5.874810 TCCCTGTTTATGATTCTTCGACTTG 59.125 40.000 0.00 0.00 0.00 3.16
5724 9197 2.575532 TCACTCCTTTGTTGCTCTTGG 58.424 47.619 0.00 0.00 0.00 3.61
5740 9213 2.711547 AGGGCCACTACTTTTCTTCACT 59.288 45.455 6.18 0.00 0.00 3.41
5793 9266 2.033236 TCTGTTTGTTCATCGCGTGTTC 60.033 45.455 5.77 3.04 0.00 3.18
5920 9393 2.281484 TTCGCACCCTTGTGGCTC 60.281 61.111 0.00 0.00 42.99 4.70
5946 9419 2.561478 TCCAGCACTTTTAGGTCCAC 57.439 50.000 0.00 0.00 0.00 4.02
5990 9463 0.250295 TGCTCTGTTTGTTCCTCGGG 60.250 55.000 0.00 0.00 0.00 5.14
6103 9576 4.437682 TTTCCTCTTCTTGCTTCCTTCA 57.562 40.909 0.00 0.00 0.00 3.02
6162 9635 4.926140 GCAATAGGCCAAAGATAAGCTT 57.074 40.909 5.01 3.48 35.66 3.74
6192 9665 7.445096 TCAAGAATAATCACACAAAGCAAGAGA 59.555 33.333 0.00 0.00 0.00 3.10
6217 9690 8.956426 TCCCTGTCAATAGTAAAATTGTTGATC 58.044 33.333 0.00 0.00 37.94 2.92
6224 9699 5.826643 TGCCTCCCTGTCAATAGTAAAATT 58.173 37.500 0.00 0.00 0.00 1.82
6259 9734 5.131784 TCTTATACCTTCGTCCTCTTCTCC 58.868 45.833 0.00 0.00 0.00 3.71
6279 9754 5.647225 GCTCTCTCTTGAACCATCAATTCTT 59.353 40.000 0.00 0.00 44.29 2.52
6281 9756 4.335037 GGCTCTCTCTTGAACCATCAATTC 59.665 45.833 0.00 0.00 44.29 2.17
6287 9762 1.980765 TGTGGCTCTCTCTTGAACCAT 59.019 47.619 0.00 0.00 0.00 3.55
6301 9776 3.135530 CCTCTTCTAAGGCTAATGTGGCT 59.864 47.826 0.00 0.00 45.04 4.75
6302 9777 3.134804 TCCTCTTCTAAGGCTAATGTGGC 59.865 47.826 0.00 0.00 36.29 5.01
6303 9778 4.651503 TCTCCTCTTCTAAGGCTAATGTGG 59.348 45.833 0.00 0.00 36.29 4.17
6306 9781 9.838339 TTTAAATCTCCTCTTCTAAGGCTAATG 57.162 33.333 0.00 0.00 36.29 1.90
6422 9899 5.518487 CACTTCCAGCGTACAACAAAATTTT 59.482 36.000 0.00 0.00 0.00 1.82
6492 9975 7.873505 AGAAAAACTAGAATAGACTGGTCACAC 59.126 37.037 0.00 0.00 42.77 3.82
6494 9977 8.088981 TGAGAAAAACTAGAATAGACTGGTCAC 58.911 37.037 0.00 0.00 42.77 3.67
6540 10023 6.281405 ACAACATTTAGTAATAGGAGCCTCG 58.719 40.000 0.00 0.00 0.00 4.63
6545 10028 7.012421 GCCCAGAACAACATTTAGTAATAGGAG 59.988 40.741 0.00 0.00 0.00 3.69
6775 10396 4.082463 ACAAACACAGACGTTTCCAAATGT 60.082 37.500 0.00 0.00 40.63 2.71
6796 10417 2.605837 TGGTACGTGCAAAAGAGACA 57.394 45.000 5.86 0.00 0.00 3.41
6813 10434 9.859427 ATGTATCACAGTTAAATTCATGTTTGG 57.141 29.630 0.00 0.00 0.00 3.28
6818 10439 7.188834 ACGCATGTATCACAGTTAAATTCATG 58.811 34.615 0.00 0.00 33.71 3.07
6854 10478 9.521841 TGTTGTCCCAAAGTATATGATTACAAA 57.478 29.630 0.00 0.00 0.00 2.83
6872 10762 0.106149 AGACCAGACGTTGTTGTCCC 59.894 55.000 0.00 0.00 39.77 4.46
6873 10763 1.202486 TCAGACCAGACGTTGTTGTCC 60.202 52.381 0.00 0.00 39.77 4.02
6900 10794 7.518689 GCATAGTGAGAAATGAGCAATCTCTTC 60.519 40.741 14.00 9.34 40.18 2.87
6958 10855 0.950555 TTCTGGATCGTGTGTGCAGC 60.951 55.000 0.00 0.00 35.32 5.25
7029 10932 3.853671 GGAAGCTGTTTGATTATGTTGCG 59.146 43.478 0.00 0.00 0.00 4.85
7129 11092 4.003648 GGCAAACACTAACATGACTAGCT 58.996 43.478 0.00 0.00 0.00 3.32
7214 11418 5.100751 GCATTTAGCAGCTCGATGTTATT 57.899 39.130 15.65 0.00 44.79 1.40
7260 11464 2.257286 CTTGCGGAATCAACTGCCCG 62.257 60.000 0.00 0.00 44.34 6.13
7295 11513 5.695851 TTTGGAAGCACAAAATCTCTCTC 57.304 39.130 0.00 0.00 37.40 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.