Multiple sequence alignment - TraesCS6A01G284100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G284100 chr6A 100.000 2563 0 0 1 2563 515288430 515290992 0.000000e+00 4734.0
1 TraesCS6A01G284100 chr6A 79.475 609 105 15 885 1485 528999121 528998525 5.100000e-112 414.0
2 TraesCS6A01G284100 chr6D 95.095 1264 44 8 645 1903 373063276 373064526 0.000000e+00 1975.0
3 TraesCS6A01G284100 chr6D 92.643 666 45 2 1902 2563 373064572 373065237 0.000000e+00 955.0
4 TraesCS6A01G284100 chr6D 88.825 349 36 1 1 349 373062932 373063277 2.360000e-115 425.0
5 TraesCS6A01G284100 chr6D 78.723 611 109 15 885 1485 384430025 384429426 3.090000e-104 388.0
6 TraesCS6A01G284100 chr6B 86.059 1162 100 30 767 1903 560973108 560974232 0.000000e+00 1192.0
7 TraesCS6A01G284100 chr4D 92.150 293 21 2 354 645 226385238 226384947 1.840000e-111 412.0
8 TraesCS6A01G284100 chr2A 91.864 295 22 2 351 644 729554952 729555245 6.600000e-111 411.0
9 TraesCS6A01G284100 chr2A 89.286 308 29 4 354 659 642587122 642586817 1.440000e-102 383.0
10 TraesCS6A01G284100 chr5D 92.361 288 18 4 358 644 354839080 354839364 8.540000e-110 407.0
11 TraesCS6A01G284100 chr3D 92.606 284 20 1 363 645 590752035 590751752 8.540000e-110 407.0
12 TraesCS6A01G284100 chr2B 91.186 295 25 1 351 644 692930570 692930864 1.430000e-107 399.0
13 TraesCS6A01G284100 chr7D 91.186 295 22 3 350 643 73143492 73143783 5.140000e-107 398.0
14 TraesCS6A01G284100 chr4A 89.869 306 27 3 354 656 738610221 738609917 8.600000e-105 390.0
15 TraesCS6A01G284100 chr1B 91.065 291 22 3 357 645 682021646 682021358 8.600000e-105 390.0
16 TraesCS6A01G284100 chr2D 91.429 70 6 0 1 70 447684197 447684128 2.100000e-16 97.1
17 TraesCS6A01G284100 chr2D 97.778 45 1 0 23 67 532004191 532004147 7.600000e-11 78.7
18 TraesCS6A01G284100 chr4B 90.278 72 7 0 1 72 608636251 608636180 7.550000e-16 95.3
19 TraesCS6A01G284100 chr7A 83.333 72 12 0 1 72 30634078 30634007 1.650000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G284100 chr6A 515288430 515290992 2562 False 4734.000000 4734 100.000000 1 2563 1 chr6A.!!$F1 2562
1 TraesCS6A01G284100 chr6A 528998525 528999121 596 True 414.000000 414 79.475000 885 1485 1 chr6A.!!$R1 600
2 TraesCS6A01G284100 chr6D 373062932 373065237 2305 False 1118.333333 1975 92.187667 1 2563 3 chr6D.!!$F1 2562
3 TraesCS6A01G284100 chr6D 384429426 384430025 599 True 388.000000 388 78.723000 885 1485 1 chr6D.!!$R1 600
4 TraesCS6A01G284100 chr6B 560973108 560974232 1124 False 1192.000000 1192 86.059000 767 1903 1 chr6B.!!$F1 1136

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 554 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.0 4.96 0.0 31.08 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2261 2347 0.316772 GTCGTGCATGCATCATCAGC 60.317 55.0 25.64 7.95 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.828520 TCTGTCTGTTTTTGCCCAAACA 59.171 40.909 9.50 9.50 43.00 2.83
31 32 2.285827 TGTTTTTGCCCAAACAGACG 57.714 45.000 6.47 0.00 40.88 4.18
42 43 2.933878 AAACAGACGCGGGCAGACAA 62.934 55.000 12.47 0.00 0.00 3.18
46 47 2.434884 ACGCGGGCAGACAAGATG 60.435 61.111 12.47 0.00 0.00 2.90
67 68 4.595538 TCGCGCGTTGGAGTTGGT 62.596 61.111 30.98 0.00 0.00 3.67
76 77 2.223377 CGTTGGAGTTGGTCTAAAGCAC 59.777 50.000 0.00 0.00 31.28 4.40
81 82 2.599082 GAGTTGGTCTAAAGCACGATCG 59.401 50.000 14.88 14.88 31.28 3.69
82 83 1.659098 GTTGGTCTAAAGCACGATCGG 59.341 52.381 20.98 9.59 31.28 4.18
96 97 1.134367 CGATCGGTCTGGTTCTTGCTA 59.866 52.381 7.38 0.00 0.00 3.49
137 138 9.914131 GTTCTTGCAGTTTATTTTAGAGGAAAT 57.086 29.630 0.00 0.00 33.95 2.17
150 151 7.954539 TTTAGAGGAAATAGATGGAGGGATT 57.045 36.000 0.00 0.00 0.00 3.01
155 156 3.803186 AATAGATGGAGGGATTGCTGG 57.197 47.619 0.00 0.00 0.00 4.85
229 230 1.922447 TGGGAGCACAAATGGGAGTAT 59.078 47.619 0.00 0.00 0.00 2.12
236 237 3.198068 CACAAATGGGAGTATGACTCGG 58.802 50.000 0.73 0.00 45.96 4.63
237 238 2.170607 ACAAATGGGAGTATGACTCGGG 59.829 50.000 0.73 0.00 45.96 5.14
238 239 2.434336 CAAATGGGAGTATGACTCGGGA 59.566 50.000 0.00 0.00 45.96 5.14
253 254 4.811364 GGAGGAGCAGGCAAGCCC 62.811 72.222 7.62 0.00 36.58 5.19
264 265 1.523524 GCAAGCCCCATCCATTTGG 59.476 57.895 0.00 0.00 36.46 3.28
339 340 7.502561 GGAAACTGGAACATATGCTATACCTTT 59.497 37.037 1.58 0.00 38.20 3.11
340 341 9.555727 GAAACTGGAACATATGCTATACCTTTA 57.444 33.333 1.58 0.00 38.20 1.85
360 361 9.225682 ACCTTTATTATAGATTCTCTGGTTGGA 57.774 33.333 0.00 0.00 0.00 3.53
364 365 7.639062 ATTATAGATTCTCTGGTTGGATGGT 57.361 36.000 0.00 0.00 0.00 3.55
365 366 5.983333 ATAGATTCTCTGGTTGGATGGTT 57.017 39.130 0.00 0.00 0.00 3.67
366 367 8.561536 TTATAGATTCTCTGGTTGGATGGTTA 57.438 34.615 0.00 0.00 0.00 2.85
367 368 5.365021 AGATTCTCTGGTTGGATGGTTAG 57.635 43.478 0.00 0.00 0.00 2.34
368 369 5.032846 AGATTCTCTGGTTGGATGGTTAGA 58.967 41.667 0.00 0.00 0.00 2.10
369 370 5.488919 AGATTCTCTGGTTGGATGGTTAGAA 59.511 40.000 0.00 0.00 0.00 2.10
370 371 4.826274 TCTCTGGTTGGATGGTTAGAAG 57.174 45.455 0.00 0.00 0.00 2.85
371 372 3.519510 TCTCTGGTTGGATGGTTAGAAGG 59.480 47.826 0.00 0.00 0.00 3.46
372 373 3.519510 CTCTGGTTGGATGGTTAGAAGGA 59.480 47.826 0.00 0.00 0.00 3.36
373 374 3.263425 TCTGGTTGGATGGTTAGAAGGAC 59.737 47.826 0.00 0.00 0.00 3.85
374 375 3.256704 TGGTTGGATGGTTAGAAGGACT 58.743 45.455 0.00 0.00 0.00 3.85
375 376 3.009033 TGGTTGGATGGTTAGAAGGACTG 59.991 47.826 0.00 0.00 0.00 3.51
376 377 3.009143 GGTTGGATGGTTAGAAGGACTGT 59.991 47.826 0.00 0.00 0.00 3.55
377 378 3.981071 TGGATGGTTAGAAGGACTGTG 57.019 47.619 0.00 0.00 0.00 3.66
378 379 2.571653 TGGATGGTTAGAAGGACTGTGG 59.428 50.000 0.00 0.00 0.00 4.17
379 380 2.572104 GGATGGTTAGAAGGACTGTGGT 59.428 50.000 0.00 0.00 0.00 4.16
380 381 3.773119 GGATGGTTAGAAGGACTGTGGTA 59.227 47.826 0.00 0.00 0.00 3.25
381 382 4.409247 GGATGGTTAGAAGGACTGTGGTAT 59.591 45.833 0.00 0.00 0.00 2.73
382 383 5.104485 GGATGGTTAGAAGGACTGTGGTATT 60.104 44.000 0.00 0.00 0.00 1.89
383 384 5.416271 TGGTTAGAAGGACTGTGGTATTC 57.584 43.478 0.00 0.00 0.00 1.75
384 385 5.091552 TGGTTAGAAGGACTGTGGTATTCT 58.908 41.667 0.00 0.00 36.33 2.40
385 386 5.187186 TGGTTAGAAGGACTGTGGTATTCTC 59.813 44.000 0.00 0.00 35.01 2.87
386 387 5.187186 GGTTAGAAGGACTGTGGTATTCTCA 59.813 44.000 0.00 0.00 35.01 3.27
387 388 6.334202 GTTAGAAGGACTGTGGTATTCTCAG 58.666 44.000 0.00 0.00 35.01 3.35
388 389 3.196685 AGAAGGACTGTGGTATTCTCAGC 59.803 47.826 0.00 0.00 30.52 4.26
389 390 2.540383 AGGACTGTGGTATTCTCAGCA 58.460 47.619 0.00 0.00 33.12 4.41
390 391 2.234908 AGGACTGTGGTATTCTCAGCAC 59.765 50.000 0.00 0.00 45.10 4.40
396 397 3.733337 GTGGTATTCTCAGCACATAGGG 58.267 50.000 0.88 0.00 44.44 3.53
397 398 3.134804 GTGGTATTCTCAGCACATAGGGT 59.865 47.826 0.88 0.00 44.44 4.34
398 399 3.780294 TGGTATTCTCAGCACATAGGGTT 59.220 43.478 0.00 0.00 0.00 4.11
399 400 4.141711 TGGTATTCTCAGCACATAGGGTTC 60.142 45.833 0.00 0.00 0.00 3.62
400 401 4.141711 GGTATTCTCAGCACATAGGGTTCA 60.142 45.833 0.00 0.00 0.00 3.18
401 402 4.574674 ATTCTCAGCACATAGGGTTCAA 57.425 40.909 0.00 0.00 0.00 2.69
402 403 3.616956 TCTCAGCACATAGGGTTCAAG 57.383 47.619 0.00 0.00 0.00 3.02
403 404 2.906389 TCTCAGCACATAGGGTTCAAGT 59.094 45.455 0.00 0.00 0.00 3.16
404 405 3.327757 TCTCAGCACATAGGGTTCAAGTT 59.672 43.478 0.00 0.00 0.00 2.66
405 406 3.674997 TCAGCACATAGGGTTCAAGTTC 58.325 45.455 0.00 0.00 0.00 3.01
406 407 3.327757 TCAGCACATAGGGTTCAAGTTCT 59.672 43.478 0.00 0.00 0.00 3.01
407 408 3.438087 CAGCACATAGGGTTCAAGTTCTG 59.562 47.826 0.00 0.00 0.00 3.02
408 409 2.749621 GCACATAGGGTTCAAGTTCTGG 59.250 50.000 0.00 0.00 0.00 3.86
409 410 3.810743 GCACATAGGGTTCAAGTTCTGGT 60.811 47.826 0.00 0.00 0.00 4.00
410 411 3.753272 CACATAGGGTTCAAGTTCTGGTG 59.247 47.826 0.00 0.00 0.00 4.17
411 412 2.561478 TAGGGTTCAAGTTCTGGTGC 57.439 50.000 0.00 0.00 0.00 5.01
412 413 0.178990 AGGGTTCAAGTTCTGGTGCC 60.179 55.000 0.00 0.00 0.00 5.01
413 414 1.179174 GGGTTCAAGTTCTGGTGCCC 61.179 60.000 0.00 0.00 0.00 5.36
414 415 1.515521 GGTTCAAGTTCTGGTGCCCG 61.516 60.000 0.00 0.00 0.00 6.13
415 416 1.896660 TTCAAGTTCTGGTGCCCGC 60.897 57.895 0.00 0.00 0.00 6.13
416 417 2.594303 CAAGTTCTGGTGCCCGCA 60.594 61.111 0.00 0.00 0.00 5.69
417 418 1.973281 CAAGTTCTGGTGCCCGCAT 60.973 57.895 0.00 0.00 0.00 4.73
418 419 1.228552 AAGTTCTGGTGCCCGCATT 60.229 52.632 0.00 0.00 0.00 3.56
419 420 0.037590 AAGTTCTGGTGCCCGCATTA 59.962 50.000 0.00 0.00 0.00 1.90
420 421 0.255890 AGTTCTGGTGCCCGCATTAT 59.744 50.000 0.00 0.00 0.00 1.28
421 422 1.102978 GTTCTGGTGCCCGCATTATT 58.897 50.000 0.00 0.00 0.00 1.40
422 423 1.476488 GTTCTGGTGCCCGCATTATTT 59.524 47.619 0.00 0.00 0.00 1.40
423 424 1.388547 TCTGGTGCCCGCATTATTTC 58.611 50.000 0.00 0.00 0.00 2.17
424 425 1.064758 TCTGGTGCCCGCATTATTTCT 60.065 47.619 0.00 0.00 0.00 2.52
425 426 1.066002 CTGGTGCCCGCATTATTTCTG 59.934 52.381 0.00 0.00 0.00 3.02
426 427 0.385390 GGTGCCCGCATTATTTCTGG 59.615 55.000 0.00 0.00 0.00 3.86
427 428 1.388547 GTGCCCGCATTATTTCTGGA 58.611 50.000 0.00 0.00 0.00 3.86
428 429 1.956477 GTGCCCGCATTATTTCTGGAT 59.044 47.619 0.00 0.00 0.00 3.41
429 430 2.362077 GTGCCCGCATTATTTCTGGATT 59.638 45.455 0.00 0.00 0.00 3.01
430 431 3.568007 GTGCCCGCATTATTTCTGGATTA 59.432 43.478 0.00 0.00 0.00 1.75
431 432 4.037446 GTGCCCGCATTATTTCTGGATTAA 59.963 41.667 0.00 0.00 0.00 1.40
432 433 4.832266 TGCCCGCATTATTTCTGGATTAAT 59.168 37.500 0.00 0.00 0.00 1.40
433 434 5.304101 TGCCCGCATTATTTCTGGATTAATT 59.696 36.000 0.00 0.00 0.00 1.40
434 435 6.183360 TGCCCGCATTATTTCTGGATTAATTT 60.183 34.615 0.00 0.00 0.00 1.82
435 436 6.366061 GCCCGCATTATTTCTGGATTAATTTC 59.634 38.462 0.00 0.00 0.00 2.17
436 437 7.432869 CCCGCATTATTTCTGGATTAATTTCA 58.567 34.615 0.00 0.00 0.00 2.69
437 438 7.596248 CCCGCATTATTTCTGGATTAATTTCAG 59.404 37.037 11.35 11.35 0.00 3.02
438 439 7.596248 CCGCATTATTTCTGGATTAATTTCAGG 59.404 37.037 15.30 4.11 0.00 3.86
439 440 8.352201 CGCATTATTTCTGGATTAATTTCAGGA 58.648 33.333 15.30 7.81 0.00 3.86
445 446 8.663209 TTTCTGGATTAATTTCAGGATTTCCA 57.337 30.769 15.30 4.18 38.89 3.53
446 447 7.886629 TCTGGATTAATTTCAGGATTTCCAG 57.113 36.000 15.30 8.92 41.33 3.86
447 448 6.322201 TCTGGATTAATTTCAGGATTTCCAGC 59.678 38.462 15.30 0.00 40.56 4.85
448 449 5.067674 TGGATTAATTTCAGGATTTCCAGCG 59.932 40.000 0.00 0.00 38.89 5.18
449 450 5.299279 GGATTAATTTCAGGATTTCCAGCGA 59.701 40.000 0.00 0.00 38.89 4.93
450 451 6.015940 GGATTAATTTCAGGATTTCCAGCGAT 60.016 38.462 0.00 0.00 38.89 4.58
451 452 4.644103 AATTTCAGGATTTCCAGCGATG 57.356 40.909 0.00 0.00 38.89 3.84
452 453 1.382522 TTCAGGATTTCCAGCGATGC 58.617 50.000 0.00 0.00 38.89 3.91
453 454 0.811219 TCAGGATTTCCAGCGATGCG 60.811 55.000 0.00 0.00 38.89 4.73
465 466 2.762360 CGATGCGCTTTTAGTGGGA 58.238 52.632 9.73 0.00 0.00 4.37
466 467 1.299541 CGATGCGCTTTTAGTGGGAT 58.700 50.000 9.73 0.00 0.00 3.85
467 468 1.003545 CGATGCGCTTTTAGTGGGATG 60.004 52.381 9.73 0.00 0.00 3.51
468 469 2.288666 GATGCGCTTTTAGTGGGATGA 58.711 47.619 9.73 0.00 0.00 2.92
469 470 1.737838 TGCGCTTTTAGTGGGATGAG 58.262 50.000 9.73 0.00 0.00 2.90
470 471 1.277842 TGCGCTTTTAGTGGGATGAGA 59.722 47.619 9.73 0.00 0.00 3.27
471 472 1.666189 GCGCTTTTAGTGGGATGAGAC 59.334 52.381 0.00 0.00 0.00 3.36
472 473 1.927174 CGCTTTTAGTGGGATGAGACG 59.073 52.381 0.00 0.00 0.00 4.18
473 474 2.674177 CGCTTTTAGTGGGATGAGACGT 60.674 50.000 0.00 0.00 0.00 4.34
474 475 3.335579 GCTTTTAGTGGGATGAGACGTT 58.664 45.455 0.00 0.00 0.00 3.99
475 476 3.371285 GCTTTTAGTGGGATGAGACGTTC 59.629 47.826 0.00 0.00 0.00 3.95
476 477 3.604875 TTTAGTGGGATGAGACGTTCC 57.395 47.619 0.00 0.00 0.00 3.62
481 482 3.274393 GGATGAGACGTTCCCATCG 57.726 57.895 14.96 0.00 37.99 3.84
482 483 0.744874 GGATGAGACGTTCCCATCGA 59.255 55.000 14.96 0.00 37.99 3.59
483 484 1.536284 GGATGAGACGTTCCCATCGAC 60.536 57.143 14.96 4.21 37.99 4.20
484 485 0.100682 ATGAGACGTTCCCATCGACG 59.899 55.000 0.00 0.00 44.34 5.12
485 486 0.956902 TGAGACGTTCCCATCGACGA 60.957 55.000 0.00 0.00 41.53 4.20
486 487 0.522915 GAGACGTTCCCATCGACGAC 60.523 60.000 0.00 0.00 41.53 4.34
487 488 1.866496 GACGTTCCCATCGACGACG 60.866 63.158 0.00 0.00 41.53 5.12
496 497 2.125952 TCGACGACGAGACGCCTA 60.126 61.111 5.75 0.00 43.81 3.93
497 498 2.021106 CGACGACGAGACGCCTAC 59.979 66.667 0.00 0.00 42.66 3.18
498 499 3.747514 CGACGACGAGACGCCTACG 62.748 68.421 0.00 0.00 43.40 3.51
499 500 3.431683 GACGACGAGACGCCTACGG 62.432 68.421 0.00 0.00 46.04 4.02
500 501 3.494336 CGACGAGACGCCTACGGT 61.494 66.667 0.00 0.00 46.04 4.83
501 502 2.099831 GACGAGACGCCTACGGTG 59.900 66.667 0.00 0.00 46.04 4.94
502 503 2.359107 ACGAGACGCCTACGGTGA 60.359 61.111 0.00 0.00 46.04 4.02
503 504 2.099831 CGAGACGCCTACGGTGAC 59.900 66.667 0.00 0.00 46.04 3.67
504 505 2.396955 CGAGACGCCTACGGTGACT 61.397 63.158 0.00 0.00 46.04 3.41
505 506 1.881602 GAGACGCCTACGGTGACTT 59.118 57.895 0.00 0.00 46.04 3.01
506 507 0.179169 GAGACGCCTACGGTGACTTC 60.179 60.000 0.00 0.00 46.04 3.01
507 508 1.513586 GACGCCTACGGTGACTTCG 60.514 63.158 0.00 0.00 46.04 3.79
508 509 2.192608 GACGCCTACGGTGACTTCGT 62.193 60.000 0.00 0.00 46.04 3.85
509 510 0.955428 ACGCCTACGGTGACTTCGTA 60.955 55.000 0.00 0.00 46.04 3.43
510 511 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
511 512 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
512 513 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
513 514 3.256558 GCCTACGGTGACTTCGTAAATT 58.743 45.455 0.00 0.00 41.62 1.82
514 515 3.681417 GCCTACGGTGACTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
515 516 4.201656 GCCTACGGTGACTTCGTAAATTTC 60.202 45.833 0.00 0.00 41.62 2.17
516 517 4.925054 CCTACGGTGACTTCGTAAATTTCA 59.075 41.667 0.00 0.00 41.62 2.69
517 518 5.406175 CCTACGGTGACTTCGTAAATTTCAA 59.594 40.000 0.00 0.00 41.62 2.69
518 519 5.338614 ACGGTGACTTCGTAAATTTCAAG 57.661 39.130 0.00 0.00 39.22 3.02
519 520 5.051816 ACGGTGACTTCGTAAATTTCAAGA 58.948 37.500 0.00 0.00 39.22 3.02
520 521 5.699458 ACGGTGACTTCGTAAATTTCAAGAT 59.301 36.000 0.00 0.00 39.22 2.40
521 522 6.015504 CGGTGACTTCGTAAATTTCAAGATG 58.984 40.000 0.00 0.00 0.00 2.90
522 523 6.128661 CGGTGACTTCGTAAATTTCAAGATGA 60.129 38.462 0.00 0.00 0.00 2.92
523 524 7.015877 GGTGACTTCGTAAATTTCAAGATGAC 58.984 38.462 0.00 0.00 0.00 3.06
524 525 7.307751 GGTGACTTCGTAAATTTCAAGATGACA 60.308 37.037 0.00 0.26 0.00 3.58
525 526 8.230486 GTGACTTCGTAAATTTCAAGATGACAT 58.770 33.333 0.00 0.00 0.00 3.06
526 527 8.229811 TGACTTCGTAAATTTCAAGATGACATG 58.770 33.333 0.00 0.00 0.00 3.21
527 528 8.099364 ACTTCGTAAATTTCAAGATGACATGT 57.901 30.769 0.00 0.00 0.00 3.21
528 529 8.230486 ACTTCGTAAATTTCAAGATGACATGTC 58.770 33.333 19.27 19.27 0.00 3.06
529 530 6.761117 TCGTAAATTTCAAGATGACATGTCG 58.239 36.000 20.54 6.37 0.00 4.35
530 531 5.959527 CGTAAATTTCAAGATGACATGTCGG 59.040 40.000 20.54 7.94 0.00 4.79
531 532 4.361451 AATTTCAAGATGACATGTCGGC 57.639 40.909 20.54 14.44 0.00 5.54
532 533 2.768253 TTCAAGATGACATGTCGGCT 57.232 45.000 20.54 16.38 0.00 5.52
533 534 2.299993 TCAAGATGACATGTCGGCTC 57.700 50.000 20.54 16.00 0.00 4.70
534 535 1.550072 TCAAGATGACATGTCGGCTCA 59.450 47.619 20.54 3.95 0.00 4.26
535 536 1.931841 CAAGATGACATGTCGGCTCAG 59.068 52.381 20.54 11.92 0.00 3.35
536 537 1.189752 AGATGACATGTCGGCTCAGT 58.810 50.000 20.54 1.05 0.00 3.41
537 538 1.135915 AGATGACATGTCGGCTCAGTC 59.864 52.381 20.54 9.53 0.00 3.51
538 539 1.135915 GATGACATGTCGGCTCAGTCT 59.864 52.381 20.54 0.00 0.00 3.24
539 540 0.528017 TGACATGTCGGCTCAGTCTC 59.472 55.000 20.54 0.00 0.00 3.36
540 541 0.814457 GACATGTCGGCTCAGTCTCT 59.186 55.000 10.69 0.00 0.00 3.10
541 542 0.814457 ACATGTCGGCTCAGTCTCTC 59.186 55.000 0.00 0.00 0.00 3.20
542 543 0.248417 CATGTCGGCTCAGTCTCTCG 60.248 60.000 0.00 0.00 0.00 4.04
543 544 1.380403 ATGTCGGCTCAGTCTCTCGG 61.380 60.000 0.00 0.00 0.00 4.63
544 545 1.745864 GTCGGCTCAGTCTCTCGGA 60.746 63.158 0.00 0.00 0.00 4.55
545 546 1.450491 TCGGCTCAGTCTCTCGGAG 60.450 63.158 0.00 0.00 40.44 4.63
546 547 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
547 548 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
548 549 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
549 550 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
550 551 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
551 552 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
552 553 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
553 554 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
554 555 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
555 556 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
556 557 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
557 558 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
558 559 1.457643 TCGGAGGTGCTCATAGGGG 60.458 63.158 0.00 0.00 31.08 4.79
559 560 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
560 561 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
561 562 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
562 563 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
563 564 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
564 565 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
565 566 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
566 567 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
567 568 1.576757 TGCTCATAGGGGTAGGGTGTA 59.423 52.381 0.00 0.00 0.00 2.90
568 569 1.969208 GCTCATAGGGGTAGGGTGTAC 59.031 57.143 0.00 0.00 0.00 2.90
569 570 2.236766 CTCATAGGGGTAGGGTGTACG 58.763 57.143 0.00 0.00 0.00 3.67
570 571 1.570501 TCATAGGGGTAGGGTGTACGT 59.429 52.381 0.00 0.00 0.00 3.57
571 572 1.684983 CATAGGGGTAGGGTGTACGTG 59.315 57.143 0.00 0.00 0.00 4.49
572 573 0.704076 TAGGGGTAGGGTGTACGTGT 59.296 55.000 0.00 0.00 0.00 4.49
573 574 0.901580 AGGGGTAGGGTGTACGTGTG 60.902 60.000 0.00 0.00 0.00 3.82
574 575 1.187567 GGGGTAGGGTGTACGTGTGT 61.188 60.000 0.00 0.00 0.00 3.72
575 576 0.037975 GGGTAGGGTGTACGTGTGTG 60.038 60.000 0.00 0.00 0.00 3.82
576 577 0.668401 GGTAGGGTGTACGTGTGTGC 60.668 60.000 0.00 0.00 0.00 4.57
577 578 1.005294 GTAGGGTGTACGTGTGTGCG 61.005 60.000 0.00 0.00 32.77 5.34
579 580 1.884004 GGGTGTACGTGTGTGCGTT 60.884 57.895 0.00 0.00 43.04 4.84
580 581 1.561250 GGTGTACGTGTGTGCGTTC 59.439 57.895 0.00 0.00 43.04 3.95
581 582 1.146957 GGTGTACGTGTGTGCGTTCA 61.147 55.000 0.00 0.00 43.04 3.18
582 583 0.856641 GTGTACGTGTGTGCGTTCAT 59.143 50.000 0.00 0.00 43.04 2.57
583 584 2.052891 GTGTACGTGTGTGCGTTCATA 58.947 47.619 0.00 0.00 43.04 2.15
584 585 2.090041 GTGTACGTGTGTGCGTTCATAG 59.910 50.000 0.00 0.00 43.04 2.23
585 586 1.652124 GTACGTGTGTGCGTTCATAGG 59.348 52.381 0.00 0.00 43.04 2.57
586 587 0.669318 ACGTGTGTGCGTTCATAGGG 60.669 55.000 0.00 0.00 43.04 3.53
587 588 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
588 589 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
589 590 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
590 591 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
591 592 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
592 593 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
593 594 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
594 595 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
595 596 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
596 597 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
597 598 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
598 599 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
599 600 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
600 601 1.412710 CATAGGGGTGAGTGTATGCGT 59.587 52.381 0.00 0.00 0.00 5.24
601 602 0.821517 TAGGGGTGAGTGTATGCGTG 59.178 55.000 0.00 0.00 0.00 5.34
602 603 1.192146 AGGGGTGAGTGTATGCGTGT 61.192 55.000 0.00 0.00 0.00 4.49
603 604 0.533491 GGGGTGAGTGTATGCGTGTA 59.467 55.000 0.00 0.00 0.00 2.90
604 605 1.138266 GGGGTGAGTGTATGCGTGTAT 59.862 52.381 0.00 0.00 0.00 2.29
605 606 2.201732 GGGTGAGTGTATGCGTGTATG 58.798 52.381 0.00 0.00 0.00 2.39
606 607 2.418197 GGGTGAGTGTATGCGTGTATGT 60.418 50.000 0.00 0.00 0.00 2.29
607 608 3.181484 GGGTGAGTGTATGCGTGTATGTA 60.181 47.826 0.00 0.00 0.00 2.29
608 609 4.500887 GGGTGAGTGTATGCGTGTATGTAT 60.501 45.833 0.00 0.00 0.00 2.29
609 610 4.444388 GGTGAGTGTATGCGTGTATGTATG 59.556 45.833 0.00 0.00 0.00 2.39
610 611 5.278604 GTGAGTGTATGCGTGTATGTATGA 58.721 41.667 0.00 0.00 0.00 2.15
611 612 5.399596 GTGAGTGTATGCGTGTATGTATGAG 59.600 44.000 0.00 0.00 0.00 2.90
612 613 4.299155 AGTGTATGCGTGTATGTATGAGC 58.701 43.478 0.00 0.00 0.00 4.26
613 614 3.119628 GTGTATGCGTGTATGTATGAGCG 59.880 47.826 0.00 0.00 0.00 5.03
614 615 1.139989 ATGCGTGTATGTATGAGCGC 58.860 50.000 0.00 0.00 44.29 5.92
615 616 0.102300 TGCGTGTATGTATGAGCGCT 59.898 50.000 11.27 11.27 44.34 5.92
616 617 1.209128 GCGTGTATGTATGAGCGCTT 58.791 50.000 13.26 0.00 41.37 4.68
617 618 1.071239 GCGTGTATGTATGAGCGCTTG 60.071 52.381 13.26 0.00 41.37 4.01
618 619 1.071239 CGTGTATGTATGAGCGCTTGC 60.071 52.381 13.26 0.00 39.58 4.01
619 620 1.071239 GTGTATGTATGAGCGCTTGCG 60.071 52.381 13.26 10.90 45.69 4.85
620 621 1.209128 GTATGTATGAGCGCTTGCGT 58.791 50.000 13.26 3.97 45.69 5.24
621 622 1.190323 GTATGTATGAGCGCTTGCGTC 59.810 52.381 13.26 12.36 45.69 5.19
622 623 0.179100 ATGTATGAGCGCTTGCGTCT 60.179 50.000 13.26 13.17 45.69 4.18
623 624 1.078201 TGTATGAGCGCTTGCGTCTG 61.078 55.000 13.26 0.00 45.69 3.51
624 625 1.078759 GTATGAGCGCTTGCGTCTGT 61.079 55.000 13.26 7.66 45.69 3.41
625 626 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
626 627 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
627 628 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
628 629 1.678269 GAGCGCTTGCGTCTGTACTG 61.678 60.000 13.26 0.00 45.69 2.74
629 630 1.733041 GCGCTTGCGTCTGTACTGA 60.733 57.895 16.38 0.00 0.00 3.41
630 631 1.078759 GCGCTTGCGTCTGTACTGAT 61.079 55.000 16.38 0.00 0.00 2.90
631 632 0.642291 CGCTTGCGTCTGTACTGATG 59.358 55.000 15.57 15.57 0.00 3.07
632 633 1.714794 GCTTGCGTCTGTACTGATGT 58.285 50.000 19.48 0.00 0.00 3.06
633 634 2.069273 GCTTGCGTCTGTACTGATGTT 58.931 47.619 19.48 0.00 0.00 2.71
634 635 2.092838 GCTTGCGTCTGTACTGATGTTC 59.907 50.000 19.48 7.84 0.00 3.18
635 636 3.317150 CTTGCGTCTGTACTGATGTTCA 58.683 45.455 19.48 9.90 0.00 3.18
636 637 3.378911 TGCGTCTGTACTGATGTTCAA 57.621 42.857 19.48 4.88 0.00 2.69
637 638 3.723260 TGCGTCTGTACTGATGTTCAAA 58.277 40.909 19.48 2.93 0.00 2.69
638 639 3.740832 TGCGTCTGTACTGATGTTCAAAG 59.259 43.478 19.48 0.00 0.00 2.77
639 640 3.987868 GCGTCTGTACTGATGTTCAAAGA 59.012 43.478 19.48 0.00 0.00 2.52
640 641 4.447724 GCGTCTGTACTGATGTTCAAAGAA 59.552 41.667 19.48 0.00 0.00 2.52
641 642 5.050363 GCGTCTGTACTGATGTTCAAAGAAA 60.050 40.000 19.48 0.00 0.00 2.52
642 643 6.511121 GCGTCTGTACTGATGTTCAAAGAAAA 60.511 38.462 19.48 0.00 0.00 2.29
643 644 7.406553 CGTCTGTACTGATGTTCAAAGAAAAA 58.593 34.615 12.51 0.00 0.00 1.94
729 730 2.431782 TGATCTGATGGCTGTTGATCGA 59.568 45.455 0.00 0.00 37.07 3.59
745 746 4.607955 TGATCGAGAAATGGTATGACGTC 58.392 43.478 9.11 9.11 0.00 4.34
761 762 0.668535 CGTCCATATCTGACTCGCCA 59.331 55.000 1.58 0.00 0.00 5.69
815 816 7.494625 GTCCTTTCTTCACCACGAATCATATTA 59.505 37.037 0.00 0.00 31.69 0.98
816 817 8.044309 TCCTTTCTTCACCACGAATCATATTAA 58.956 33.333 0.00 0.00 31.69 1.40
817 818 8.840321 CCTTTCTTCACCACGAATCATATTAAT 58.160 33.333 0.00 0.00 31.69 1.40
982 987 8.195165 TGTAGCTACTCAATCCTAGCATTAAT 57.805 34.615 23.84 0.00 38.29 1.40
983 988 8.651389 TGTAGCTACTCAATCCTAGCATTAATT 58.349 33.333 23.84 0.00 38.29 1.40
1123 1129 5.186409 ACACTAGTAAGGCGTGGAATTTCTA 59.814 40.000 0.00 0.00 33.13 2.10
1126 1132 3.930848 AGTAAGGCGTGGAATTTCTAACG 59.069 43.478 15.96 15.96 39.00 3.18
1335 1362 3.459598 AGGGATGCCAGTGTTATGTATGT 59.540 43.478 5.86 0.00 0.00 2.29
1364 1391 4.788617 ACTACCACCAAACCTGGAATCTAT 59.211 41.667 0.00 0.00 46.92 1.98
1502 1536 6.455360 ACTATGTTGCAGACAATTATTGGG 57.545 37.500 9.88 0.12 42.62 4.12
1666 1701 5.123227 AGAAGAACAAATCGAGGTTGAACA 58.877 37.500 16.24 0.00 0.00 3.18
1678 1713 6.046593 TCGAGGTTGAACATACAATATGTCC 58.953 40.000 0.00 0.26 32.36 4.02
1953 2036 7.849804 ACATCACTCACCATTGAAAGTATAC 57.150 36.000 0.00 0.00 0.00 1.47
1955 2038 7.550551 ACATCACTCACCATTGAAAGTATACTG 59.449 37.037 6.06 0.00 0.00 2.74
2113 2196 8.404000 ACACATGAAAAGATGAATAGATGAAGC 58.596 33.333 0.00 0.00 0.00 3.86
2201 2287 7.042051 TGACGAGCTTTAATAAATAGACCATGC 60.042 37.037 0.00 0.00 0.00 4.06
2202 2288 6.765989 ACGAGCTTTAATAAATAGACCATGCA 59.234 34.615 0.00 0.00 0.00 3.96
2203 2289 7.072030 CGAGCTTTAATAAATAGACCATGCAC 58.928 38.462 0.00 0.00 0.00 4.57
2224 2310 0.244721 GAACCAACAGATGCTTGGCC 59.755 55.000 0.00 0.00 41.85 5.36
2235 2321 3.140895 AGATGCTTGGCCAGGGTTTATAT 59.859 43.478 17.71 0.00 0.00 0.86
2286 2372 1.068402 TGATGCATGCACGACTTTTGG 60.068 47.619 25.37 0.00 0.00 3.28
2328 2414 5.122512 AGATTCATGCTTACGCTACGTAT 57.877 39.130 0.00 0.00 41.97 3.06
2333 2419 1.665169 TGCTTACGCTACGTATCGTGA 59.335 47.619 28.88 21.72 41.97 4.35
2337 2423 1.094073 ACGCTACGTATCGTGAGGCT 61.094 55.000 22.22 0.00 41.39 4.58
2353 2439 0.249996 GGCTGTTGCTTTGCCACAAT 60.250 50.000 0.00 0.00 45.46 2.71
2369 2455 1.072331 ACAATTGCTCCTCGGTTCACT 59.928 47.619 5.05 0.00 0.00 3.41
2376 2462 2.425592 CTCGGTTCACTGCACCCA 59.574 61.111 0.00 0.00 0.00 4.51
2394 2480 3.825328 CCCATAGGTGCTCTATTGCTTT 58.175 45.455 0.00 0.00 36.59 3.51
2395 2481 4.210331 CCCATAGGTGCTCTATTGCTTTT 58.790 43.478 0.00 0.00 36.59 2.27
2450 2536 2.096417 GCTTACCACATGTGTCACGTTC 60.096 50.000 23.79 3.92 0.00 3.95
2494 2581 1.403679 CGTGTTGGTGATGGTTGTGTT 59.596 47.619 0.00 0.00 0.00 3.32
2504 2591 0.529833 TGGTTGTGTTGCAAGTGGTG 59.470 50.000 0.00 0.00 37.83 4.17
2506 2593 1.469079 GGTTGTGTTGCAAGTGGTGTC 60.469 52.381 0.00 0.00 37.83 3.67
2513 2600 0.463654 TGCAAGTGGTGTCTGTGTCC 60.464 55.000 0.00 0.00 0.00 4.02
2543 2630 0.389817 TGAGCGACATGAAACGGAGG 60.390 55.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.650116 ATCTTGTCTGCCCGCGTCT 61.650 57.895 4.92 0.00 0.00 4.18
31 32 2.825836 CCCATCTTGTCTGCCCGC 60.826 66.667 0.00 0.00 0.00 6.13
37 38 2.579201 CGCGACCCCATCTTGTCT 59.421 61.111 0.00 0.00 0.00 3.41
60 61 2.599082 CGATCGTGCTTTAGACCAACTC 59.401 50.000 7.03 0.00 0.00 3.01
61 62 2.607187 CGATCGTGCTTTAGACCAACT 58.393 47.619 7.03 0.00 0.00 3.16
63 64 1.274167 ACCGATCGTGCTTTAGACCAA 59.726 47.619 15.09 0.00 0.00 3.67
67 68 1.134367 CCAGACCGATCGTGCTTTAGA 59.866 52.381 15.09 0.00 0.00 2.10
76 77 0.108615 AGCAAGAACCAGACCGATCG 60.109 55.000 8.51 8.51 0.00 3.69
81 82 5.966742 AAAAGAATAGCAAGAACCAGACC 57.033 39.130 0.00 0.00 0.00 3.85
110 111 8.458573 TTCCTCTAAAATAAACTGCAAGAACA 57.541 30.769 0.00 0.00 37.43 3.18
131 132 3.986134 AGCAATCCCTCCATCTATTTCCT 59.014 43.478 0.00 0.00 0.00 3.36
137 138 2.196742 ACCAGCAATCCCTCCATCTA 57.803 50.000 0.00 0.00 0.00 1.98
138 139 1.302907 AACCAGCAATCCCTCCATCT 58.697 50.000 0.00 0.00 0.00 2.90
167 168 0.941542 TGCCGACTTCGTTTCCTTTG 59.058 50.000 0.00 0.00 37.74 2.77
168 169 1.535462 CATGCCGACTTCGTTTCCTTT 59.465 47.619 0.00 0.00 37.74 3.11
219 220 2.320781 CTCCCGAGTCATACTCCCATT 58.679 52.381 1.63 0.00 42.12 3.16
229 230 2.363018 CCTGCTCCTCCCGAGTCA 60.363 66.667 0.00 0.00 41.10 3.41
236 237 4.811364 GGGCTTGCCTGCTCCTCC 62.811 72.222 11.71 0.00 0.00 4.30
247 248 0.538118 CACCAAATGGATGGGGCTTG 59.462 55.000 6.42 0.00 45.18 4.01
253 254 4.281688 AGAGAAACAACACCAAATGGATGG 59.718 41.667 6.42 0.00 46.38 3.51
264 265 7.258441 AGCTAAAAGGAAAAGAGAAACAACAC 58.742 34.615 0.00 0.00 0.00 3.32
309 310 2.097466 GCATATGTTCCAGTTTCCACCG 59.903 50.000 4.29 0.00 0.00 4.94
349 350 3.519510 CCTTCTAACCATCCAACCAGAGA 59.480 47.826 0.00 0.00 0.00 3.10
352 353 3.264450 AGTCCTTCTAACCATCCAACCAG 59.736 47.826 0.00 0.00 0.00 4.00
353 354 3.009033 CAGTCCTTCTAACCATCCAACCA 59.991 47.826 0.00 0.00 0.00 3.67
354 355 3.009143 ACAGTCCTTCTAACCATCCAACC 59.991 47.826 0.00 0.00 0.00 3.77
356 357 3.009033 CCACAGTCCTTCTAACCATCCAA 59.991 47.826 0.00 0.00 0.00 3.53
357 358 2.571653 CCACAGTCCTTCTAACCATCCA 59.428 50.000 0.00 0.00 0.00 3.41
358 359 2.572104 ACCACAGTCCTTCTAACCATCC 59.428 50.000 0.00 0.00 0.00 3.51
359 360 3.983044 ACCACAGTCCTTCTAACCATC 57.017 47.619 0.00 0.00 0.00 3.51
360 361 5.726793 AGAATACCACAGTCCTTCTAACCAT 59.273 40.000 0.00 0.00 30.37 3.55
361 362 5.091552 AGAATACCACAGTCCTTCTAACCA 58.908 41.667 0.00 0.00 30.37 3.67
362 363 5.187186 TGAGAATACCACAGTCCTTCTAACC 59.813 44.000 0.00 0.00 31.61 2.85
363 364 6.282199 TGAGAATACCACAGTCCTTCTAAC 57.718 41.667 0.00 0.00 31.61 2.34
364 365 5.105310 GCTGAGAATACCACAGTCCTTCTAA 60.105 44.000 0.00 0.00 31.61 2.10
365 366 4.402793 GCTGAGAATACCACAGTCCTTCTA 59.597 45.833 0.00 0.00 31.61 2.10
366 367 3.196685 GCTGAGAATACCACAGTCCTTCT 59.803 47.826 0.00 0.00 33.22 2.85
367 368 3.055819 TGCTGAGAATACCACAGTCCTTC 60.056 47.826 0.00 0.00 34.60 3.46
368 369 2.906389 TGCTGAGAATACCACAGTCCTT 59.094 45.455 0.00 0.00 34.60 3.36
369 370 2.234908 GTGCTGAGAATACCACAGTCCT 59.765 50.000 0.00 0.00 34.60 3.85
370 371 2.028112 TGTGCTGAGAATACCACAGTCC 60.028 50.000 0.00 0.00 33.66 3.85
371 372 3.319137 TGTGCTGAGAATACCACAGTC 57.681 47.619 0.00 0.00 33.66 3.51
372 373 3.988976 ATGTGCTGAGAATACCACAGT 57.011 42.857 0.00 0.00 40.99 3.55
373 374 4.375272 CCTATGTGCTGAGAATACCACAG 58.625 47.826 0.00 0.00 40.99 3.66
374 375 3.134623 CCCTATGTGCTGAGAATACCACA 59.865 47.826 0.00 0.00 41.77 4.17
375 376 3.134804 ACCCTATGTGCTGAGAATACCAC 59.865 47.826 0.00 0.00 0.00 4.16
376 377 3.384168 ACCCTATGTGCTGAGAATACCA 58.616 45.455 0.00 0.00 0.00 3.25
377 378 4.141711 TGAACCCTATGTGCTGAGAATACC 60.142 45.833 0.00 0.00 0.00 2.73
378 379 5.023533 TGAACCCTATGTGCTGAGAATAC 57.976 43.478 0.00 0.00 0.00 1.89
379 380 5.189736 ACTTGAACCCTATGTGCTGAGAATA 59.810 40.000 0.00 0.00 0.00 1.75
380 381 4.018960 ACTTGAACCCTATGTGCTGAGAAT 60.019 41.667 0.00 0.00 0.00 2.40
381 382 3.327757 ACTTGAACCCTATGTGCTGAGAA 59.672 43.478 0.00 0.00 0.00 2.87
382 383 2.906389 ACTTGAACCCTATGTGCTGAGA 59.094 45.455 0.00 0.00 0.00 3.27
383 384 3.340814 ACTTGAACCCTATGTGCTGAG 57.659 47.619 0.00 0.00 0.00 3.35
384 385 3.327757 AGAACTTGAACCCTATGTGCTGA 59.672 43.478 0.00 0.00 0.00 4.26
385 386 3.438087 CAGAACTTGAACCCTATGTGCTG 59.562 47.826 0.00 0.00 0.00 4.41
386 387 3.560025 CCAGAACTTGAACCCTATGTGCT 60.560 47.826 0.00 0.00 0.00 4.40
387 388 2.749621 CCAGAACTTGAACCCTATGTGC 59.250 50.000 0.00 0.00 0.00 4.57
388 389 3.753272 CACCAGAACTTGAACCCTATGTG 59.247 47.826 0.00 0.00 0.00 3.21
389 390 3.810743 GCACCAGAACTTGAACCCTATGT 60.811 47.826 0.00 0.00 0.00 2.29
390 391 2.749621 GCACCAGAACTTGAACCCTATG 59.250 50.000 0.00 0.00 0.00 2.23
391 392 2.290960 GGCACCAGAACTTGAACCCTAT 60.291 50.000 0.00 0.00 0.00 2.57
392 393 1.073284 GGCACCAGAACTTGAACCCTA 59.927 52.381 0.00 0.00 0.00 3.53
393 394 0.178990 GGCACCAGAACTTGAACCCT 60.179 55.000 0.00 0.00 0.00 4.34
394 395 2.341452 GGCACCAGAACTTGAACCC 58.659 57.895 0.00 0.00 0.00 4.11
408 409 1.388547 TCCAGAAATAATGCGGGCAC 58.611 50.000 0.00 0.00 0.00 5.01
409 410 2.363306 ATCCAGAAATAATGCGGGCA 57.637 45.000 0.00 0.00 0.00 5.36
410 411 4.846779 TTAATCCAGAAATAATGCGGGC 57.153 40.909 0.00 0.00 0.00 6.13
411 412 7.432869 TGAAATTAATCCAGAAATAATGCGGG 58.567 34.615 0.00 0.00 0.00 6.13
412 413 7.596248 CCTGAAATTAATCCAGAAATAATGCGG 59.404 37.037 15.47 0.00 0.00 5.69
413 414 8.352201 TCCTGAAATTAATCCAGAAATAATGCG 58.648 33.333 15.47 0.00 0.00 4.73
419 420 9.270707 TGGAAATCCTGAAATTAATCCAGAAAT 57.729 29.630 15.47 8.52 36.82 2.17
420 421 8.663209 TGGAAATCCTGAAATTAATCCAGAAA 57.337 30.769 15.47 7.10 36.82 2.52
424 425 5.067674 CGCTGGAAATCCTGAAATTAATCCA 59.932 40.000 10.20 0.00 37.15 3.41
425 426 5.299279 TCGCTGGAAATCCTGAAATTAATCC 59.701 40.000 10.20 0.00 37.15 3.01
426 427 6.377327 TCGCTGGAAATCCTGAAATTAATC 57.623 37.500 10.20 0.00 37.15 1.75
427 428 6.736794 GCATCGCTGGAAATCCTGAAATTAAT 60.737 38.462 10.20 0.00 37.15 1.40
428 429 5.450412 GCATCGCTGGAAATCCTGAAATTAA 60.450 40.000 10.20 0.00 37.15 1.40
429 430 4.036734 GCATCGCTGGAAATCCTGAAATTA 59.963 41.667 10.20 0.00 37.15 1.40
430 431 3.181483 GCATCGCTGGAAATCCTGAAATT 60.181 43.478 10.20 0.00 37.15 1.82
431 432 2.360165 GCATCGCTGGAAATCCTGAAAT 59.640 45.455 10.20 0.52 37.15 2.17
432 433 1.745087 GCATCGCTGGAAATCCTGAAA 59.255 47.619 10.20 0.00 37.15 2.69
433 434 1.382522 GCATCGCTGGAAATCCTGAA 58.617 50.000 10.20 0.00 37.15 3.02
434 435 0.811219 CGCATCGCTGGAAATCCTGA 60.811 55.000 10.20 1.98 37.15 3.86
435 436 1.645455 CGCATCGCTGGAAATCCTG 59.355 57.895 0.44 1.39 37.93 3.86
436 437 4.131376 CGCATCGCTGGAAATCCT 57.869 55.556 0.44 0.00 36.82 3.24
447 448 1.003545 CATCCCACTAAAAGCGCATCG 60.004 52.381 11.47 0.00 0.00 3.84
448 449 2.288666 TCATCCCACTAAAAGCGCATC 58.711 47.619 11.47 0.00 0.00 3.91
449 450 2.092968 TCTCATCCCACTAAAAGCGCAT 60.093 45.455 11.47 0.00 0.00 4.73
450 451 1.277842 TCTCATCCCACTAAAAGCGCA 59.722 47.619 11.47 0.00 0.00 6.09
451 452 1.666189 GTCTCATCCCACTAAAAGCGC 59.334 52.381 0.00 0.00 0.00 5.92
452 453 1.927174 CGTCTCATCCCACTAAAAGCG 59.073 52.381 0.00 0.00 0.00 4.68
453 454 2.973945 ACGTCTCATCCCACTAAAAGC 58.026 47.619 0.00 0.00 0.00 3.51
454 455 3.933332 GGAACGTCTCATCCCACTAAAAG 59.067 47.826 0.00 0.00 0.00 2.27
455 456 3.934068 GGAACGTCTCATCCCACTAAAA 58.066 45.455 0.00 0.00 0.00 1.52
456 457 3.604875 GGAACGTCTCATCCCACTAAA 57.395 47.619 0.00 0.00 0.00 1.85
465 466 0.100682 CGTCGATGGGAACGTCTCAT 59.899 55.000 0.00 0.00 41.03 2.90
466 467 0.956902 TCGTCGATGGGAACGTCTCA 60.957 55.000 4.48 0.00 44.51 3.27
467 468 0.522915 GTCGTCGATGGGAACGTCTC 60.523 60.000 4.48 0.00 44.51 3.36
468 469 1.505353 GTCGTCGATGGGAACGTCT 59.495 57.895 4.48 0.00 44.51 4.18
469 470 1.866496 CGTCGTCGATGGGAACGTC 60.866 63.158 6.56 0.00 43.20 4.34
470 471 2.177531 CGTCGTCGATGGGAACGT 59.822 61.111 6.56 0.00 39.71 3.99
471 472 1.582937 CTCGTCGTCGATGGGAACG 60.583 63.158 8.75 10.22 45.21 3.95
472 473 0.522915 GTCTCGTCGTCGATGGGAAC 60.523 60.000 18.43 9.39 45.21 3.62
473 474 1.798735 GTCTCGTCGTCGATGGGAA 59.201 57.895 18.43 0.78 45.21 3.97
474 475 2.458610 CGTCTCGTCGTCGATGGGA 61.459 63.158 13.08 13.08 45.21 4.37
475 476 2.022902 CGTCTCGTCGTCGATGGG 59.977 66.667 14.28 11.36 45.21 4.00
476 477 2.648102 GCGTCTCGTCGTCGATGG 60.648 66.667 14.28 5.73 45.21 3.51
477 478 1.759293 TAGGCGTCTCGTCGTCGATG 61.759 60.000 8.20 8.20 45.21 3.84
478 479 1.520120 TAGGCGTCTCGTCGTCGAT 60.520 57.895 5.00 0.00 45.21 3.59
479 480 2.125952 TAGGCGTCTCGTCGTCGA 60.126 61.111 4.42 4.42 44.12 4.20
480 481 2.021106 GTAGGCGTCTCGTCGTCG 59.979 66.667 0.00 0.00 40.52 5.12
481 482 2.021106 CGTAGGCGTCTCGTCGTC 59.979 66.667 0.00 0.00 36.23 4.20
482 483 3.494336 CCGTAGGCGTCTCGTCGT 61.494 66.667 0.00 0.00 46.14 4.34
494 495 6.364165 TCTTGAAATTTACGAAGTCACCGTAG 59.636 38.462 0.00 0.00 43.93 3.51
495 496 6.215121 TCTTGAAATTTACGAAGTCACCGTA 58.785 36.000 0.00 0.00 43.93 4.02
496 497 5.051816 TCTTGAAATTTACGAAGTCACCGT 58.948 37.500 0.00 0.00 43.93 4.83
497 498 5.585500 TCTTGAAATTTACGAAGTCACCG 57.415 39.130 0.00 0.00 43.93 4.94
498 499 7.015877 GTCATCTTGAAATTTACGAAGTCACC 58.984 38.462 0.00 0.00 43.93 4.02
499 500 7.572759 TGTCATCTTGAAATTTACGAAGTCAC 58.427 34.615 0.00 0.00 43.93 3.67
500 501 7.722795 TGTCATCTTGAAATTTACGAAGTCA 57.277 32.000 0.00 0.00 43.93 3.41
501 502 8.230486 ACATGTCATCTTGAAATTTACGAAGTC 58.770 33.333 0.00 0.00 43.93 3.01
503 504 7.423598 CGACATGTCATCTTGAAATTTACGAAG 59.576 37.037 24.93 0.00 0.00 3.79
504 505 7.233689 CGACATGTCATCTTGAAATTTACGAA 58.766 34.615 24.93 0.00 0.00 3.85
505 506 6.183360 CCGACATGTCATCTTGAAATTTACGA 60.183 38.462 24.93 0.00 0.00 3.43
506 507 5.959527 CCGACATGTCATCTTGAAATTTACG 59.040 40.000 24.93 6.10 0.00 3.18
507 508 5.739161 GCCGACATGTCATCTTGAAATTTAC 59.261 40.000 24.93 0.00 0.00 2.01
508 509 5.647658 AGCCGACATGTCATCTTGAAATTTA 59.352 36.000 24.93 0.00 0.00 1.40
509 510 4.460382 AGCCGACATGTCATCTTGAAATTT 59.540 37.500 24.93 0.00 0.00 1.82
510 511 4.012374 AGCCGACATGTCATCTTGAAATT 58.988 39.130 24.93 0.00 0.00 1.82
511 512 3.614092 AGCCGACATGTCATCTTGAAAT 58.386 40.909 24.93 0.00 0.00 2.17
512 513 3.002791 GAGCCGACATGTCATCTTGAAA 58.997 45.455 24.93 0.00 0.00 2.69
513 514 2.028203 TGAGCCGACATGTCATCTTGAA 60.028 45.455 24.93 8.41 0.00 2.69
514 515 1.550072 TGAGCCGACATGTCATCTTGA 59.450 47.619 24.93 9.10 0.00 3.02
515 516 1.931841 CTGAGCCGACATGTCATCTTG 59.068 52.381 24.93 8.54 0.00 3.02
516 517 1.552337 ACTGAGCCGACATGTCATCTT 59.448 47.619 24.93 7.66 0.00 2.40
517 518 1.135915 GACTGAGCCGACATGTCATCT 59.864 52.381 24.93 19.35 0.00 2.90
518 519 1.135915 AGACTGAGCCGACATGTCATC 59.864 52.381 24.93 18.39 0.00 2.92
519 520 1.135915 GAGACTGAGCCGACATGTCAT 59.864 52.381 24.93 10.54 0.00 3.06
520 521 0.528017 GAGACTGAGCCGACATGTCA 59.472 55.000 24.93 5.36 0.00 3.58
521 522 0.814457 AGAGACTGAGCCGACATGTC 59.186 55.000 16.21 16.21 0.00 3.06
522 523 0.814457 GAGAGACTGAGCCGACATGT 59.186 55.000 0.00 0.00 0.00 3.21
523 524 0.248417 CGAGAGACTGAGCCGACATG 60.248 60.000 0.00 0.00 0.00 3.21
524 525 1.380403 CCGAGAGACTGAGCCGACAT 61.380 60.000 0.00 0.00 0.00 3.06
525 526 2.041115 CCGAGAGACTGAGCCGACA 61.041 63.158 0.00 0.00 0.00 4.35
526 527 1.711060 CTCCGAGAGACTGAGCCGAC 61.711 65.000 0.00 0.00 0.00 4.79
527 528 1.450491 CTCCGAGAGACTGAGCCGA 60.450 63.158 0.00 0.00 0.00 5.54
528 529 2.477176 CCTCCGAGAGACTGAGCCG 61.477 68.421 0.00 0.00 0.00 5.52
529 530 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
530 531 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
531 532 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
532 533 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
533 534 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
534 535 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
535 536 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
536 537 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
537 538 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
538 539 0.468214 CCCTATGAGCACCTCCGAGA 60.468 60.000 0.00 0.00 0.00 4.04
539 540 1.467678 CCCCTATGAGCACCTCCGAG 61.468 65.000 0.00 0.00 0.00 4.63
540 541 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
541 542 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
542 543 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
543 544 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
544 545 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
545 546 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
546 547 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
547 548 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
548 549 1.969208 GTACACCCTACCCCTATGAGC 59.031 57.143 0.00 0.00 0.00 4.26
549 550 2.236766 CGTACACCCTACCCCTATGAG 58.763 57.143 0.00 0.00 0.00 2.90
550 551 1.570501 ACGTACACCCTACCCCTATGA 59.429 52.381 0.00 0.00 0.00 2.15
551 552 1.684983 CACGTACACCCTACCCCTATG 59.315 57.143 0.00 0.00 0.00 2.23
552 553 1.288932 ACACGTACACCCTACCCCTAT 59.711 52.381 0.00 0.00 0.00 2.57
553 554 0.704076 ACACGTACACCCTACCCCTA 59.296 55.000 0.00 0.00 0.00 3.53
554 555 0.901580 CACACGTACACCCTACCCCT 60.902 60.000 0.00 0.00 0.00 4.79
555 556 1.187567 ACACACGTACACCCTACCCC 61.188 60.000 0.00 0.00 0.00 4.95
556 557 0.037975 CACACACGTACACCCTACCC 60.038 60.000 0.00 0.00 0.00 3.69
557 558 0.668401 GCACACACGTACACCCTACC 60.668 60.000 0.00 0.00 0.00 3.18
558 559 1.005294 CGCACACACGTACACCCTAC 61.005 60.000 0.00 0.00 0.00 3.18
559 560 1.286570 CGCACACACGTACACCCTA 59.713 57.895 0.00 0.00 0.00 3.53
560 561 2.028484 CGCACACACGTACACCCT 59.972 61.111 0.00 0.00 0.00 4.34
561 562 2.279650 ACGCACACACGTACACCC 60.280 61.111 0.00 0.00 46.19 4.61
568 569 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
569 570 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
570 571 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
571 572 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
572 573 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
573 574 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
574 575 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
575 576 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
576 577 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
577 578 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
578 579 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
579 580 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
580 581 1.412710 ACGCATACACTCACCCCTATG 59.587 52.381 0.00 0.00 0.00 2.23
581 582 1.412710 CACGCATACACTCACCCCTAT 59.587 52.381 0.00 0.00 0.00 2.57
582 583 0.821517 CACGCATACACTCACCCCTA 59.178 55.000 0.00 0.00 0.00 3.53
583 584 1.192146 ACACGCATACACTCACCCCT 61.192 55.000 0.00 0.00 0.00 4.79
584 585 0.533491 TACACGCATACACTCACCCC 59.467 55.000 0.00 0.00 0.00 4.95
585 586 2.201732 CATACACGCATACACTCACCC 58.798 52.381 0.00 0.00 0.00 4.61
586 587 2.888594 ACATACACGCATACACTCACC 58.111 47.619 0.00 0.00 0.00 4.02
587 588 5.278604 TCATACATACACGCATACACTCAC 58.721 41.667 0.00 0.00 0.00 3.51
588 589 5.508200 TCATACATACACGCATACACTCA 57.492 39.130 0.00 0.00 0.00 3.41
589 590 4.383052 GCTCATACATACACGCATACACTC 59.617 45.833 0.00 0.00 0.00 3.51
590 591 4.299155 GCTCATACATACACGCATACACT 58.701 43.478 0.00 0.00 0.00 3.55
591 592 3.119628 CGCTCATACATACACGCATACAC 59.880 47.826 0.00 0.00 0.00 2.90
592 593 3.305110 CGCTCATACATACACGCATACA 58.695 45.455 0.00 0.00 0.00 2.29
593 594 2.090658 GCGCTCATACATACACGCATAC 59.909 50.000 0.00 0.00 45.25 2.39
594 595 2.324860 GCGCTCATACATACACGCATA 58.675 47.619 0.00 0.00 45.25 3.14
595 596 1.139989 GCGCTCATACATACACGCAT 58.860 50.000 0.00 0.00 45.25 4.73
596 597 2.588731 GCGCTCATACATACACGCA 58.411 52.632 0.00 0.00 45.25 5.24
597 598 1.071239 CAAGCGCTCATACATACACGC 60.071 52.381 12.06 0.00 46.20 5.34
598 599 1.071239 GCAAGCGCTCATACATACACG 60.071 52.381 12.06 0.00 34.30 4.49
599 600 1.071239 CGCAAGCGCTCATACATACAC 60.071 52.381 12.06 0.00 35.30 2.90
600 601 1.208259 CGCAAGCGCTCATACATACA 58.792 50.000 12.06 0.00 35.30 2.29
601 602 1.190323 GACGCAAGCGCTCATACATAC 59.810 52.381 12.06 0.00 44.19 2.39
602 603 1.067060 AGACGCAAGCGCTCATACATA 59.933 47.619 12.06 0.00 44.19 2.29
603 604 0.179100 AGACGCAAGCGCTCATACAT 60.179 50.000 12.06 0.00 44.19 2.29
604 605 1.078201 CAGACGCAAGCGCTCATACA 61.078 55.000 12.06 0.00 44.19 2.29
605 606 1.078759 ACAGACGCAAGCGCTCATAC 61.079 55.000 12.06 1.58 44.19 2.39
606 607 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
607 608 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
608 609 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
609 610 1.444553 AGTACAGACGCAAGCGCTC 60.445 57.895 12.06 11.06 44.19 5.03
610 611 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
611 612 1.078759 ATCAGTACAGACGCAAGCGC 61.079 55.000 15.09 0.00 44.19 5.92
612 613 0.642291 CATCAGTACAGACGCAAGCG 59.358 55.000 13.50 13.50 46.03 4.68
613 614 1.714794 ACATCAGTACAGACGCAAGC 58.285 50.000 0.00 0.00 45.62 4.01
615 616 3.378911 TGAACATCAGTACAGACGCAA 57.621 42.857 0.00 0.00 0.00 4.85
616 617 3.378911 TTGAACATCAGTACAGACGCA 57.621 42.857 0.00 0.00 0.00 5.24
617 618 3.987868 TCTTTGAACATCAGTACAGACGC 59.012 43.478 0.00 0.00 0.00 5.19
618 619 6.525121 TTTCTTTGAACATCAGTACAGACG 57.475 37.500 0.00 0.00 0.00 4.18
705 706 2.362736 TCAACAGCCATCAGATCAAGC 58.637 47.619 0.00 0.00 0.00 4.01
729 730 6.672266 AGATATGGACGTCATACCATTTCT 57.328 37.500 18.91 17.27 44.13 2.52
745 746 3.674528 AGAATGGCGAGTCAGATATGG 57.325 47.619 0.00 0.00 0.00 2.74
783 784 4.019681 TCGTGGTGAAGAAAGGACCAATAT 60.020 41.667 0.00 0.00 41.43 1.28
815 816 8.596293 TCCCTCAAAAAGAGCAATTGATTTATT 58.404 29.630 10.34 0.00 43.31 1.40
816 817 8.137745 TCCCTCAAAAAGAGCAATTGATTTAT 57.862 30.769 10.34 0.00 43.31 1.40
817 818 7.537596 TCCCTCAAAAAGAGCAATTGATTTA 57.462 32.000 10.34 0.00 43.31 1.40
818 819 6.423776 TCCCTCAAAAAGAGCAATTGATTT 57.576 33.333 10.34 3.85 43.31 2.17
932 935 2.050691 CGTTTTTGTGATCTTTGGGCG 58.949 47.619 0.00 0.00 0.00 6.13
982 987 8.784043 GCTCCTCATTTCTTCTTACAAACTTAA 58.216 33.333 0.00 0.00 0.00 1.85
983 988 7.936847 TGCTCCTCATTTCTTCTTACAAACTTA 59.063 33.333 0.00 0.00 0.00 2.24
984 989 6.772716 TGCTCCTCATTTCTTCTTACAAACTT 59.227 34.615 0.00 0.00 0.00 2.66
985 990 6.205658 GTGCTCCTCATTTCTTCTTACAAACT 59.794 38.462 0.00 0.00 0.00 2.66
994 999 4.836125 TTTGTGTGCTCCTCATTTCTTC 57.164 40.909 0.00 0.00 0.00 2.87
1176 1187 6.146347 GCTTAGAAGTTGCCATAGCTGTATAC 59.854 42.308 0.00 0.00 40.80 1.47
1335 1362 2.039746 CAGGTTTGGTGGTAGTCATCCA 59.960 50.000 0.00 0.00 0.00 3.41
1638 1673 7.663827 TCAACCTCGATTTGTTCTTCTAGTAA 58.336 34.615 6.76 0.00 0.00 2.24
1865 1901 6.918022 CCCTGACTTCTGTAAAAATGTGAAAC 59.082 38.462 0.00 0.00 37.35 2.78
1993 2076 4.628333 CCATCATGAAATGTTCCAACAAGC 59.372 41.667 0.00 0.00 46.80 4.01
2001 2084 7.679638 GCCACTAACTACCATCATGAAATGTTC 60.680 40.741 0.00 0.00 46.80 3.18
2052 2135 9.260002 TCTTTCTTTTGCCTTTTTATCATCAAC 57.740 29.630 0.00 0.00 0.00 3.18
2063 2146 7.823799 TGTCATTTCTTTCTTTCTTTTGCCTTT 59.176 29.630 0.00 0.00 0.00 3.11
2105 2188 2.107204 ACTGTTCCTGTTGGCTTCATCT 59.893 45.455 0.00 0.00 0.00 2.90
2106 2189 2.508526 ACTGTTCCTGTTGGCTTCATC 58.491 47.619 0.00 0.00 0.00 2.92
2107 2190 2.664402 ACTGTTCCTGTTGGCTTCAT 57.336 45.000 0.00 0.00 0.00 2.57
2113 2196 5.611374 TCTCTCTTTTACTGTTCCTGTTGG 58.389 41.667 0.00 0.00 0.00 3.77
2162 2248 6.385649 AAAGCTCGTCAAAGGTTTCAATTA 57.614 33.333 0.00 0.00 41.77 1.40
2167 2253 8.965986 ATTTATTAAAGCTCGTCAAAGGTTTC 57.034 30.769 4.53 0.00 43.75 2.78
2173 2259 8.780846 TGGTCTATTTATTAAAGCTCGTCAAA 57.219 30.769 0.00 0.00 0.00 2.69
2201 2287 2.030540 CCAAGCATCTGTTGGTTCTGTG 60.031 50.000 0.48 0.00 44.02 3.66
2202 2288 2.233271 CCAAGCATCTGTTGGTTCTGT 58.767 47.619 0.48 0.00 44.02 3.41
2203 2289 1.068055 GCCAAGCATCTGTTGGTTCTG 60.068 52.381 3.86 0.00 44.02 3.02
2224 2310 4.020573 TGCCGATCCTACATATAAACCCTG 60.021 45.833 0.00 0.00 0.00 4.45
2235 2321 1.069513 CGGGTTTATGCCGATCCTACA 59.930 52.381 0.00 0.00 0.00 2.74
2261 2347 0.316772 GTCGTGCATGCATCATCAGC 60.317 55.000 25.64 7.95 0.00 4.26
2319 2405 0.657659 CAGCCTCACGATACGTAGCG 60.658 60.000 29.58 29.58 38.32 4.26
2328 2414 1.785041 GCAAAGCAACAGCCTCACGA 61.785 55.000 0.00 0.00 0.00 4.35
2333 2419 1.329171 TTGTGGCAAAGCAACAGCCT 61.329 50.000 10.20 0.00 43.78 4.58
2337 2423 1.134461 AGCAATTGTGGCAAAGCAACA 60.134 42.857 7.40 0.00 41.12 3.33
2353 2439 1.301716 GCAGTGAACCGAGGAGCAA 60.302 57.895 0.00 0.00 0.00 3.91
2494 2581 0.463654 GGACACAGACACCACTTGCA 60.464 55.000 0.00 0.00 0.00 4.08
2504 2591 2.604046 ATAATGGCTCGGACACAGAC 57.396 50.000 0.00 0.00 0.00 3.51
2506 2593 2.868583 CTCAATAATGGCTCGGACACAG 59.131 50.000 0.00 0.00 0.00 3.66
2513 2600 1.570813 TGTCGCTCAATAATGGCTCG 58.429 50.000 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.